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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16249-1
Contig ID Contig-U16249-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16249-1 (Contig-U16249-1Q) /CSM_Contig/Contig-U16249-1Q.Seq.d
AAAACATTTTCATTTAATTTAATAAACAAATAAACAAACAAAGCAAACAG
ACAATATATAAAATAAATAAATAAAATTTTATATAAATAAAAAAAAAAAT
GATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCATTTTTTCAC
TTGGTGAAAGTACATTGATTAGACCAAATTTTTATTATAGAATTGATTGG
GAAAACATAAATTGTATTAGAGCTCCATGTCCACAATATTCAGCACAAAA
AGTCAATACAAATGAAAATTCAACTGCAATTTTAAGTTTCATTTACCCAG
ATGGCTATAATAAATCATACCTTTTTTCTGAAGAGGCCAGATCTCTCATT
ATTTTTGGTTCTATCCAACCAAACCCAAATTTCCCAACTGAAGCAAAAGA
TTTAAAAGTTGTAAGAGTTTATAAATCATTACCATTAGGTAACCCAGCAT
CAGCAACTGATAAATATTATATTTTTGGTGATAATGGTGTCAGATGTGTC
ACTACCCCATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAA
ACAAACTGTTAGTGATATACTCATGCCATATTCAAAGAACGTTGGTAAAT
ATTTTGATTCTGCATGGTTAGGATCTAAAACAGTTAGATCAGATGACTAT
GGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAATTACAATATCAAA
TGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCCAT
TATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAAT
CGTTGTTTAGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGG
TATGCCACTTTGTCCAGCAGGTTATCGTTTAGATCAATTCAGAGCAACTG
AAGCAAATGGATGTCCAAAATATTATTGTGATCCAACCTTTGTTTGTAAA
ACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAAAAAAAAA
AAAAAATAAAAAAAAAATAAACACCTCCTTTTTTATTATTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 1080
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5004178
End point 5005257
Strand (PLUS/MINUS) PLUS
Number of clones 67
Number of EST 70
Link to clone list U16249
List of clone(s) 

est1=CFC881F,1,587
est2=CFC889F,1,583
est3=SSB177F,13,330
est4=AHO755F,17,487
est5=SLF169F,24,332
est6=SSL202F,28,388
est7=SSL481F,30,214
est8=SSB765F,36,326
est9=SLA503E,39,1015
est10=SSI514Z,266,1063
est11=SSL737Z,278,1080
est12=SSE431F,305,641
est13=SSJ224Z,318,1013
est14=SSE726Z,327,1014
est15=SSI294Z,327,1014
est16=VSH747Z,335,980
est17=SSG158Z,336,1015
est18=SLE537Z,341,1013
est19=SSC502Z,346,1066
est20=SSK447Z,358,1069
est21=SSG136Z,360,1019
est22=SSE548Z,362,1024
est23=SSM240Z,377,1013
est24=SSI612Z,386,1013
est25=SSA321Z,391,1063
est26=SSK528Z,391,1080
est27=SSE110Z,394,1013
est28=SSL633E,402,1015
est29=SSA181F,405,991
est30=SSF491Z,409,1013
est31=SSM285Z,411,1047
est32=SSC839Z,431,1080
est33=SSF318Z,435,1062
est34=SSM411Z,437,1074
est35=SSE470Z,440,1068
est36=SSK489Z,447,1062
est37=SSM524Z,451,1071
est38=SSJ133Z,453,1072
est39=SSI834Z,457,1059
est40=SSJ893Z,458,1080
est41=SLF169Z,465,1013
est42=SSD807Z,468,1028
est43=SLC727Z,474,1080
est44=SSM753Z,479,1019
est45=SSG266Z,485,1036
est46=SSD264Z,488,1063
est47=AHO555Z,494,955
est48=SSC835Z,494,1080
est49=SSE282Z,496,1071
est50=SSD104E,501,1028
est51=SSF685Z,503,1074
est52=SLE778F,510,982
est53=SSM721Z,513,1063
est54=SSB151Z,517,1080
est55=SLB454E,524,1013
est56=SSM747Z,527,1071
est57=SSG675E,550,1015
est58=SSB176Z,551,1080
est59=SSE871Z,554,1080
est60=SSA840Z,568,1080
est61=SLF137Z,595,1080
est62=SLF283Z,646,1080
est63=SSJ269Z,667,1060
est64=SSG244Z,680,1028
est65=SLD237E,701,1023
est66=SLE808Z,705,1080
est67=SSG137Z,776,1021
est68=AHI711F,859,1049
est69=SSL481Z,871,1080
est70=SSE431Z,900,1072
Translated Amino Acid sequence 
nifi*fnkqinkqskqtiykink*nfi*IKKKMIKLFCISAILFIFIFSLGESTLIRPNF
YYRIDWENINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFSEEARSLIIFGS
IQPNPNFPTEAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTTPCASTDAVLLNI
RTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKITISNAFIHLPD
PIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAGYRLDQFRATE
ANGCPKYYCDPTFVCKTH*flfllif*tivkkkknkkkintsffiikkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ktfsfnlink*tnkanrqyik*inkilyk*kkk**nyfvyqqyclysffhlvkvh*ldqi
fiieligkt*ivlelhvhniqhkksiqmkiqlqf*vsftqmaiinhtfflkrpdlslflv
lsnqtqisqlkqki*kl*efinhyh*vtqhqqliniiflvimvsdvslphvhqqmqfy*i
svlnkllviyschiqrtlvnililhg*dlkqldqmtmv*svkvhsvveklqyqmlsfiyq
iqlvnvihchy*nvqvvrl*htlvmkivv*llqlalnlhsvpwvchfvqqviv*inseql
kqmdvqniiviqplfvkhinfffc*fskql*kkkkikkk*tppflllkkkkkkkkkkkkk


Frame B:
khfhli**tnkqtkqtdni*nk*ikfyinkkkndkiilyisnivyihfftw*kyid*tkf
ll*n*lgkhkly*ssmstifstksqyk*kfncnfkfhlprwl**iipff*rgqishyfwf
yptkpkfpn*skrfkscksl*iitir*psisn**ilyfw**wcqmchypmcinrcsfiey
py*tnc**ythaifkerw*if*fcmvri*ns*ir*lwfnrsryiq*wknynikcfhsftr
snw*m*fiaiikmsrwfdydils**kslfsfsnlhsifilylgyatlssrlsfrsiqsn*
skwmskill*snlcl*ntlisffvnflnnckkkkk*kknkhllfyy*kkkkkkkkkkkk


Frame C:
nifi*fnkqinkqskqtiykink*nfi*IKKKMIKLFCISAILFIFIFSLGESTLIRPNF
YYRIDWENINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFSEEARSLIIFGS
IQPNPNFPTEAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTTPCASTDAVLLNI
RTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKITISNAFIHLPD
PIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAGYRLDQFRATE
ANGCPKYYCDPTFVCKTH*flfllif*tivkkkknkkkintsffiikkkkkkkkkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16249-1 (Contig-U16249-1Q)
/CSM_Contig/Contig-U16249-1Q.Seq.d
         (1080 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16249-1 (Contig-U16249-1Q) /CSM_Contig/Conti...  1727  0.0
Contig-U12264-1 (Contig-U12264-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U15089-1 (Contig-U15089-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U04090-1 (Contig-U04090-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U10366-1 (Contig-U10366-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U04909-1 (Contig-U04909-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U04564-1 (Contig-U04564-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U16277-1 (Contig-U16277-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U13322-1 (Contig-U13322-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U13162-1 (Contig-U13162-1Q) /CSM_Contig/Conti...    38  0.028

>Contig-U16249-1 (Contig-U16249-1Q) /CSM_Contig/Contig-U16249-1Q.Seq.d
          Length = 1080

 Score = 1727 bits (871), Expect = 0.0
 Identities = 885/892 (99%)
 Strand = Plus / Plus

                                                                       
Query: 100 tgataaaattattttgtatatcagcaatattgtttatattcattttttcacttggtgaaa 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tgataaaattattttgtatatcagcaatattgtttatattcattttttcacttggtgaaa 159

                                                                       
Query: 160 gtacattgattagaccaaatttttattatagaattgattgggaaaacataaattgtatta 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gtacattgattagaccaaatttttattatagaattgattgggaaaacataaattgtatta 219

                                                                       
Query: 220 gagctccatgtccacaatattcagcacaaaaagtcaatacaaatgaaaattcaactgcaa 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gagctccatgtccacaatattcagcacaaaaagtcaatacaaatgaaaattcaactgcaa 279

                                                                       
Query: 280 ttttaagtttcatttacccagatggctataataaatcataccttttttctgaagaggcca 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttttaagtttcatttacccagatggctataataaatcataccttttttctgaagaggcca 339

                                                                       
Query: 340 gatctctcattatttttggttctatccaaccaaacccaaatttcccaactgaagcaaaag 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gatctctcattatttttggttctatccaaccaaacccaaatttcccaactgaagcaaaag 399

                                                                       
Query: 400 atttaaaagttgtaagagtttataaatcattaccattaggtaacccagcatcagcaactg 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atttaaaagttgtaagagtttataaatcattaccattaggtaacccagcatcagcaactg 459

                                                                       
Query: 460 ataaatattatatttttggtgataatggtgtcagatgtgtcactaccccatgtgcatcaa 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ataaatattatatttttggtgataatggtgtcagatgtgtcactaccccatgtgcatcaa 519

                                                                       
Query: 520 cagatgcagttttattgaatatccgtactaaacaaactgttagtgatatactcatgccat 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cagatgcagttttattgaatatccgtactaaacaaactgttagtgatatactcatgccat 579

                                                                       
Query: 580 attcaaagaacgttggtaaatattttgattctgcatggttaggatctaaaacagttagat 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 attcaaagaacgttggtaaatattttgattctgcatggttaggatctaaaacagttagat 639

                                                                       
Query: 640 cagatgactatggtttaatcggtcaaggtacattcagtagtggaaaaattacaatatcaa 699
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cagatgactatggtttaatcggtcaaggtacattcagtagtggaaaaattacaatatcaa 699

                                                                       
Query: 700 atgctttcattcatttaccagatccaattggtaaatgtgattcattgccattattaaaat 759
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atgctttcattcatttaccagatccaattggtaaatgtgattcattgccattattaaaat 759

                                                                       
Query: 760 gtccaggtggttcgattatgacatactctcgtaatgaaaatcgttgtttagcttctccaa 819
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gtccaggtggttcgattatgacatactctcgtaatgaaaatcgttgtttagcttctccaa 819

                                                                       
Query: 820 cttgcactcaatcttcattctgtaccttgggtatgccactttgtccagcaggttatcgtt 879
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cttgcactcaatcttcattctgtaccttgggtatgccactttgtccagcaggttatcgtt 879

                                                                       
Query: 880 tagatcaattcagagcaactgaagcaaatggatgtccaaaatattattgtgatccaacct 939
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tagatcaattcagagcaactgaagcaaatggatgtccaaaatattattgtgatccaacct 939

                                                               
Query: 940 ttgtttgtaaaacacattaatttcnnnnnnngttaattttctaaacaattgt 991
           ||||||||||||||||||||||||       |||||||||||||||||||||
Sbjct: 940 ttgtttgtaaaacacattaatttctttttttgttaattttctaaacaattgt 991


 Score =  103 bits (52), Expect = 6e-22
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                              
Query: 1  aaaacattttcatttaatttaataaacaaataaacaaacaaagcaaacagac 52
          ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaaacattttcatttaatttaataaacaaataaacaaacaaagcaaacagac 52


>Contig-U12264-1 (Contig-U12264-1Q) /CSM_Contig/Contig-U12264-1Q.Seq.d
          Length = 2626

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 16  aatttaataaacaaataaacaaacaaa 42
           |||| ||||||||||||||||||||||
Sbjct: 131 aattaaataaacaaataaacaaacaaa 157


 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 27   caaataaacaaacaaa 42
            ||||||||||||||||
Sbjct: 1529 caaataaacaaacaaa 1544


 Score = 30.2 bits (15), Expect = 6.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 24   aaacaaataaacaaa 38
            |||||||||||||||
Sbjct: 1538 aaacaaataaacaaa 1552


>Contig-U15089-1 (Contig-U15089-1Q) /CSM_Contig/Contig-U15089-1Q.Seq.d
          Length = 551

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 21  aataaacaaataaacaaacaaa 42
           ||||||||||||||||||||||
Sbjct: 325 aataaacaaataaacaaacaaa 346


 Score = 30.2 bits (15), Expect = 6.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 24  aaacaaataaacaaa 38
           |||||||||||||||
Sbjct: 320 aaacaaataaacaaa 334


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,213
Number of Sequences: 8402
Number of extensions: 20213
Number of successful extensions: 2294
Number of sequences better than 10.0: 277
length of query: 1080
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1064
effective length of database: 7,941,110
effective search space: 8449341040
effective search space used: 8449341040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.22
Homology vs DNA 
Query= Contig-U16249-1 (Contig-U16249-1Q) /CSM_Contig/Contig-U16249-1Q.Seq.d
         (1080 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90263) Dictyostelium discoideum slug cDNA, clone SSI514.       1407   0.0    2
(C92385) Dictyostelium discoideum slug cDNA, clone SSE726.       1324   0.0    1
(C90356) Dictyostelium discoideum slug cDNA, clone SSI294.       1324   0.0    1
(C89699) Dictyostelium discoideum slug cDNA, clone SSG158.       1306   0.0    1
(AU060164) Dictyostelium discoideum slug cDNA, clone SLA503.     1298   0.0    1
(AU034814) Dictyostelium discoideum slug cDNA, clone SLE537.     1296   0.0    1
(C90045) Dictyostelium discoideum slug cDNA, clone SSG136.       1261   0.0    1
(C92441) Dictyostelium discoideum slug cDNA, clone SSE548.       1257   0.0    1
(AU038984) Dictyostelium discoideum slug cDNA, clone SSM240.     1229   0.0    1
(C91564) Dictyostelium discoideum slug cDNA, clone SSK447.       1229   0.0    2
(C90847) Dictyostelium discoideum slug cDNA, clone SSJ224.       1219   0.0    1
(C90279) Dictyostelium discoideum slug cDNA, clone SSI612.       1203   0.0    1
(C89617) Dictyostelium discoideum slug cDNA, clone SSA321.       1193   0.0    1
(AU267909) Dictyostelium discoideum vegetative cDNA clone:VS...  1178   0.0    2
(C93026) Dictyostelium discoideum slug cDNA, clone SSF491.       1166   0.0    1
(C94199) Dictyostelium discoideum slug cDNA, clone SSK528.       1164   0.0    1
(AU039022) Dictyostelium discoideum slug cDNA, clone SSM285.     1162   0.0    1
(AU037633) Dictyostelium discoideum slug cDNA, clone SSE110.     1136   0.0    2
(C24676) Dictyostelium discoideum slug cDNA, clone SL-X081.      1122   0.0    1
(C92614) Dictyostelium discoideum slug cDNA, clone SSF318.       1120   0.0    1
(AU039119) Dictyostelium discoideum slug cDNA, clone SSM411.     1116   0.0    1
(C91939) Dictyostelium discoideum slug cDNA, clone SSC502.       1112   0.0    2
(AU037935) Dictyostelium discoideum slug cDNA, clone SSE470.     1110   0.0    1
(AU051979) Dictyostelium discoideum slug cDNA, clone SSC839.     1102   0.0    1
(C91335) Dictyostelium discoideum slug cDNA, clone SSK489.       1096   0.0    1
(C93285) Dictyostelium discoideum slug cDNA, clone SSM524.       1090   0.0    1
(C90741) Dictyostelium discoideum slug cDNA, clone SSJ893.       1078   0.0    1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...  1003   0.0    3
(C90602) Dictyostelium discoideum slug cDNA, clone SSI834.       1072   0.0    1
(AU052824) Dictyostelium discoideum slug cDNA, clone SLF169.     1065   0.0    1
(AU037575) Dictyostelium discoideum slug cDNA, clone SSD807.     1055   0.0    1
(AU034347) Dictyostelium discoideum slug cDNA, clone SLC727.     1047   0.0    1
(C93804) Dictyostelium discoideum slug cDNA, clone SSL737.        533   0.0    3
(C90775) Dictyostelium discoideum slug cDNA, clone SSJ133.       1011   0.0    2
(C89857) Dictyostelium discoideum slug cDNA, clone SSG266.       1027   0.0    1
(C92229) Dictyostelium discoideum slug cDNA, clone SSD264.       1021   0.0    1
(C93187) Dictyostelium discoideum slug cDNA, clone SSM753.        987   0.0    2
(AU037778) Dictyostelium discoideum slug cDNA, clone SSE282.     1005   0.0    1
(C92109) Dictyostelium discoideum slug cDNA, clone SSD104.        997   0.0    1
(C92650) Dictyostelium discoideum slug cDNA, clone SSF685.        987   0.0    1
(C93379) Dictyostelium discoideum slug cDNA, clone SSM721.        965   0.0    1
(AU051975) Dictyostelium discoideum slug cDNA, clone SSC835.      959   0.0    1
(AU033801) Dictyostelium discoideum slug cDNA, clone SLB454.      954   0.0    1
(BJ360565) Dictyostelium discoideum cDNA clone:ddc6b22, 5' e...   944   0.0    2
(C93710) Dictyostelium discoideum slug cDNA, clone SSL633.        783   0.0    7
(BJ360567) Dictyostelium discoideum cDNA clone:ddc6b24, 5' e...   930   0.0    2
(C93181) Dictyostelium discoideum slug cDNA, clone SSM747.        910   0.0    2
(BJ329841) Dictyostelium discoideum cDNA clone:dda26p11, 5' ...   914   0.0    1
(AU061602) Dictyostelium discoideum slug cDNA, clone SLE778.      910   0.0    1
(BJ356547) Dictyostelium discoideum cDNA clone:dda60m13, 3' ...   908   0.0    1
(AU051843) Dictyostelium discoideum slug cDNA, clone SSB151.      900   0.0    1
(C89945) Dictyostelium discoideum slug cDNA, clone SSG675.        900   0.0    1
(C92509) Dictyostelium discoideum slug cDNA, clone SSE871.        898   0.0    1
(AU052000) Dictyostelium discoideum slug cDNA, clone SSB176.      868   0.0    1
(AU051821) Dictyostelium discoideum slug cDNA, clone SSA840.      858   0.0    1
(AU052809) Dictyostelium discoideum slug cDNA, clone SLF137.      674   0.0    2
(AU052893) Dictyostelium discoideum slug cDNA, clone SLF283.      575   0.0    2
(BJ338254) Dictyostelium discoideum cDNA clone:dda60n13, 5' ...   674   0.0    1
(AU052114) Dictyostelium discoideum slug cDNA, clone SLA503.      547   0.0    3
(C89720) Dictyostelium discoideum slug cDNA, clone SSG244.        656   0.0    1
(AU052388) Dictyostelium discoideum slug cDNA, clone SLD237.      533   e-165  2
(AU039592) Dictyostelium discoideum slug cDNA, clone SLE808.      456   e-161  2
(C90886) Dictyostelium discoideum slug cDNA, clone SSJ269.        565   e-156  1
(AU072406) Dictyostelium discoideum slug cDNA, clone SSE431.      476   e-130  1
(C90046) Dictyostelium discoideum slug cDNA, clone SSG137.        472   e-128  1
(AU061638) Dictyostelium discoideum slug cDNA, clone SLF169.      438   e-118  1
(AU071542) Dictyostelium discoideum slug cDNA, clone SSB765.      331   3e-86  1
(AU074521) Dictyostelium discoideum slug cDNA, clone SSL202.      315   2e-81  1
(AU038788) Dictyostelium discoideum slug cDNA, clone SSL481.      283   7e-72  1
(AU071296) Dictyostelium discoideum slug cDNA, clone SSB177.      276   2e-69  1
(BJ334859) Dictyostelium discoideum cDNA clone:dda48f03, 5' ...   264   6e-66  1
(AU037897) Dictyostelium discoideum slug cDNA, clone SSE431.      226   1e-54  1
(AU074665) Dictyostelium discoideum slug cDNA, clone SSL481.      206   1e-48  1
(AU268811) Dictyostelium discoideum vegetative cDNA clone:VS...    42   3e-10  5
(BJ429296) Dictyostelium discoideum cDNA clone:ddv3a04, 3' e...    42   5e-10  5
(AU270904) Dictyostelium discoideum vegetative cDNA clone:VS...    42   3e-08  4
(AU265609) Dictyostelium discoideum vegetative cDNA clone:VS...    42   3e-08  4
(BJ435541) Dictyostelium discoideum cDNA clone:ddv27o11, 3' ...    42   5e-08  4
(AU270148) Dictyostelium discoideum vegetative cDNA clone:VS...    42   0.007  3
(BJ431161) Dictyostelium discoideum cDNA clone:ddv13f03, 3' ...    42   0.010  2
(AU269040) Dictyostelium discoideum vegetative cDNA clone:VS...    42   0.010  2
(AU269041) Dictyostelium discoideum vegetative cDNA clone:VS...    42   0.010  2
(AU263121) Dictyostelium discoideum vegetative cDNA clone:VS...    42   0.010  2
(ER335355) 1092344300615 Global-Ocean-Sampling_GS-34-01-01-1...    50   0.056  2
(AU038254) Dictyostelium discoideum slug cDNA, clone SSH476.       38   0.11   2
(AC024794) Caenorhabditis elegans cosmid Y48G1BM, complete s...    50   0.17   1
(AC006904) Caenorhabditis elegans clone Y74C9, *** SEQUENCIN...    50   0.17   1
(AC006900) Caenorhabditis elegans clone Y73F10, *** SEQUENCI...    50   0.17   1
(AC006785) Caenorhabditis elegans clone Y48G1, *** SEQUENCIN...    50   0.17   1
(ER352181) 1092347004968 Global-Ocean-Sampling_GS-34-01-01-1...    50   0.17   1
(BJ431675) Dictyostelium discoideum cDNA clone:ddv15g02, 3' ...    36   0.23   3
(AL021481) Caenorhabditis elegans YAC Y43F4B.                      46   0.41   3
(BX936445) Zebrafish DNA sequence from clone DKEY-50O12 in l...    48   0.69   1
(BX005335) Zebrafish DNA sequence from clone DKEY-240N8.           48   0.69   1
(AL163204) Homo sapiens chromosome 21 segment HS21C004.            48   0.69   1
(AL162851) Human DNA sequence from clone RP11-186M12 on chro...    48   0.69   1
(AL109748) Homo sapiens chromosome 21 PAC RPCIP704M13256Q2.        48   0.69   1
(AL050303) Homo sapiens chromosome 21 PAC RPCIP704G14214Q2.        48   0.69   1
(AC120100) Rattus norvegicus clone CH230-315C19, WORKING DRA...    48   0.69   1
(AC096243) Rattus norvegicus clone CH230-35J15, *** SEQUENCI...    48   0.69   1
(FP016006) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.69   1
(AC183204) Bos taurus clone CH240-99B16, WORKING DRAFT SEQUE...    48   0.69   1
(AC164712) Bos taurus clone CH240-160L15, WORKING DRAFT SEQU...    48   0.69   1
(ER450343) 1092963847469 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.69   1
(AC127346) Mus musculus BAC clone RP23-54F4 from chromosome ...    32   1.4    2
(AC141644) Mus musculus BAC clone RP23-115F21 from chromosom...    32   1.4    2
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,...    36   1.4    2
(AY149028) Plasmodium chabaudi chabaudi strain AS clone YAC1...    42   1.8    6
(AC008807) Homo sapiens chromosome 5 clone CTD-2087C24, comp...    36   1.8    5
(AM659577) Entamoeba moshkovskii FIC GSS, clone mosh090h08.p1k.    34   1.9    2
(EK007126) 1092955113345 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.9    2
(FH946888) CHO_OF6745xc12r1.ab1 CHO_OF6 Nicotiana tabacum ge...    40   2.5    2
(EJ231797) 1092404006135 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.6    2
(AC188697) Taeniopygia guttata BAC clone TGMCBa-6H12 from ch...    46   2.7    1
(BS000003) Pan troglodytes chromosome 22 clone:PTB-084L06, m...    46   2.7    1
(AC183594) Pan troglodytes BAC clone CH251-687D21 from chrom...    46   2.7    1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    46   2.7    1
(AK067149) Oryza sativa Japonica Group cDNA clone:J013097G10...    46   2.7    1
(AC210485) Oryza glaberrima clone OG_BBa0077G11, complete se...    46   2.7    1
(AC210447) Oryza glaberrima clone OG_BBa0010M11, complete se...    46   2.7    1
(AC119797) Oryza sativa Japonica Group chromosome 3 clone OS...    46   2.7    1
(AC099401) Oryza sativa Japonica Group chromosome 3 clone OJ...    46   2.7    1
(DD293979) SUSCEPTIBILITY GENE FOR HUMAN STROKE; METHODS OF ...    46   2.7    1
(AX573239) Sequence 85 from Patent WO02074992.                     46   2.7    1
(AX573238) Sequence 1 from Patent WO02074992.                      46   2.7    1
(AL391382) Human DNA sequence from clone RP11-38M15 on chrom...    46   2.7    1
(AL121875) Human DNA sequence from clone RP11-51C14 on chrom...    46   2.7    1
(AL031121) Human DNA sequence from clone RP3-495O10 on chrom...    46   2.7    1
(AC203598) Homo sapiens FOSMID clone ABC10-44586400K20 from ...    46   2.7    1
(AC091913) Homo sapiens chromosome 5 clone RP11-216D7, compl...    46   2.7    1
(AC091840) Homo sapiens chromosome 5 clone CTD-2116N8, WORKI...    46   2.7    1
(AY245863) Homo sapiens chromosome 5 clone RP11-151F7, *** S...    46   2.7    1
(BH403953) AG-ND-141E15.TF ND-TAM Anopheles gambiae genomic ...    46   2.7    1
(BH403323) AG-ND-141F16.TF ND-TAM Anopheles gambiae genomic ...    46   2.7    1
(FH599753) CHO_OF4920xh02f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.7    1
(FH288999) CHO_OF4197xl19r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.7    1
(EJ477809) 1095403452358 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.7    1
(CW658984) OG_BBa0010M11.f OG_BBa Oryza glaberrima genomic c...    46   2.7    1
(AG898939) Oryza sativa Indica Group genomic DNA, BAC end se...    46   2.7    1
(AG865407) Oryza sativa Indica Group genomic DNA, BAC end se...    46   2.7    1
(AG524277) Mus musculus molossinus DNA, clone:MSMg01-432D05....    46   2.7    1
(CL792786) OR_CBa0001K21.f OR_CBa Oryza rufipogon genomic cl...    46   2.7    1
(FE189382) LV_NC_RA49H16r Litopenaeus vannamei nerve cord cD...    46   2.7    1
(FE059190) LV_ES_RA30N17r Litopenaeus vannamei eyestalk cDNA...    46   2.7    1
(AY556158) Mycoplasma gallisepticum strain K730 GapA (gapA) ...    46   2.7    1
(AC178210) Strongylocentrotus purpuratus clone R3-3085F07, W...    36   3.3    5
(BX890559) Zebrafish DNA sequence from clone DKEY-52J6 in li...    34   3.3    9
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   4.7    13
(Z70781) Caenorhabditis elegans Cosmid F57A8.                      40   4.9    2
(M98552) Caenorhabditis elegans cosmid ZK370, complete seque...    42   6.0    2
(BP610639) Arabidopsis thaliana cDNA clone:RAFL16-12-D23, 3'...    42   6.4    2
(FE195485) B188D04 Antarctic fish Dissostichus mawsoni adult...    38   6.6    2
(AC113412) Homo sapiens chromosome 5 clone RP11-509M23, comp...    32   7.6    8
(CB293485) UCRCS01_06ag01_g1 Washington Navel orange cold ac...    42   8.3    2
(BW996113) Cryptomeria japonica cDNA, clone: CM04585, 3' end...    38   8.4    2
(FI231620) CccaBb001-K7JR CccABb Cajanus cajan genomic clone...    38   8.5    2
(AZ895509) RPCI-24-170F4.TJ RPCI-24 Mus musculus genomic clo...    36   9.6    2
(FI237594) CccaBb016-K17JF CccABb Cajanus cajan genomic clon...    38   9.6    2
(FI273440) CccaBb050-E8JF CccABb Cajanus cajan genomic clone...    38   9.6    2
(EK283370) 1095462303525 Global-Ocean-Sampling_GS-31-01-01-1...    42   10.0   2

>(C90263) Dictyostelium discoideum slug cDNA, clone SSI514.
          Length = 779

 Score = 1407 bits (710), Expect(2) = 0.0
 Identities = 713/714 (99%)
 Strand = Plus / Plus


Query: 278 aattttaagtttcatttacccagatggctataataaatcataccttttttctgaagaggc 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16  aattttaagtttcatttacccagatggctataataaatcataccttttttctgaagaggc 75


Query: 338 cagatctctcattatttttggttctatccaaccaaacccaaatttcccaactgaagcaaa 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  cagatctctcattatttttggttctatccaaccaaacccaaatttcccaactgaagcaaa 135


Query: 398 agatttaaaagttgtaagagtttataaatcattaccattaggtaacccagcatcagcaac 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 agatttaaaagttgtaagagtttataaatcattaccattaggtaacccagcatcagcaac 195


Query: 458 tgataaatattatatttttggtgataatggtgtcagatgtgtcactaccccatgtgcatc 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgataaatattatatttttggtgataatggtgtcagatgtgtcactaccccatgtgcatc 255


Query: 518 aacagatgcagttttattgaatatccgtactaaacaaactgttagtgatatactcatgcc 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aacagatgcagttttattgaatatccgtactaaacaaactgttagtgatatactcatgcc 315


Query: 578 atattcaaagaacgttggtaaatattttgattctgcatggttaggatctaaaacagttag 637
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atattcaaagaacgttggtaaatattttgattctgcatggttaggatctaaaacagttag 375


Query: 638 atcagatgactatggtttaatcggtcaaggtacattcagtagtggaaaaattacaatatc 697
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atcagatgactatggtttaatcggtcaaggtacattcagtagtggaaaaattacaatatc 435


Query: 698 aaatgctttcattcatttaccagatccaattggtaaatgtgattcattgccattattaaa 757
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaatgctttcattcatttaccagatccaattggtaaatgtgattcattgccattattaaa 495


Query: 758 atgtccaggtggttcgattatgacatactctcgtaatgaaaatcgttgtttagcttctcc 817
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 496 atgtccaggtggttcgattatgacatattctcgtaatgaaaatcgttgtttagcttctcc 555


Query: 818 aacttgcactcaatcttcattctgtaccttgggtatgccactttgtccagcaggttatcg 877
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aacttgcactcaatcttcattctgtaccttgggtatgccactttgtccagcaggttatcg 615


Query: 878 tttagatcaattcagagcaactgaagcaaatggatgtccaaaatattattgtgatccaac 937
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttagatcaattcagagcaactgaagcaaatggatgtccaaaatattattgtgatccaac 675


Query: 938 ctttgtttgtaaaacacattaatttctttttttgttaattttctaaacaattgt 991
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctttgtttgtaaaacacattaatttctttttttgttaattttctaaacaattgt 729

 Score = 32.2 bits (16), Expect(2) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 264 gaaaattcaactgcaa 279
           ||||||||||||||||
Sbjct: 1   gaaaattcaactgcaa 16

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,246,948,143
Number of extensions: 80126933
Number of successful extensions: 6583671
Number of sequences better than 10.0: 160
Length of query: 1080
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1056
Effective length of database: 96,409,374,237
Effective search space: 101808299194272
Effective search space used: 101808299194272
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.27
Homology vs Protein 
Query= Contig-U16249-1 (Contig-U16249-1Q) /CSM_Contig/Contig-U16249-1Q.Seq.d
         (1080 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   557   e-157
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   338   1e-91
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   224   5e-57
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    78   5e-13
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    47   9e-04
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    43   0.017
CP000934_2920(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    42   0.029
AL033501_6(AL033501|pid:none) C.albicans cosmid Ca41C10.  &T1823...    37   1.2
CP000282_3256(CP000282|pid:none) Saccharophagus degradans 2-40, ...    35   3.5
FM992688_766(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   4.6
AB267386_1(AB267386|pid:none) Nepenthes alata NaTLP1c mRNA for t...    34   7.8
AB267385_1(AB267385|pid:none) Nepenthes alata NaTLP1b mRNA for t...    34   7.8

>AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromosome
           2 map 1005175-1418323 strain AX4, complete sequence.
          Length = 286

 Score =  557 bits (1436), Expect = e-157
 Identities = 265/265 (100%), Positives = 265/265 (100%)
 Frame = +3

Query: 153 GESTLIRPNFYYRIDWENINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFSE 332
           GESTLIRPNFYYRIDWENINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFSE
Sbjct: 19  GESTLIRPNFYYRIDWENINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFSE 78

Query: 333 EARSLIIFGSIQPNPNFPTEAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTTPC 512
           EARSLIIFGSIQPNPNFPTEAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTTPC
Sbjct: 79  EARSLIIFGSIQPNPNFPTEAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTTPC 138

Query: 513 ASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKIT 692
           ASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKIT
Sbjct: 139 ASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKIT 198

Query: 693 ISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAG 872
           ISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAG
Sbjct: 199 ISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAG 258

Query: 873 YRLDQFRATEANGCPKYYCDPTFVC 947
           YRLDQFRATEANGCPKYYCDPTFVC
Sbjct: 259 YRLDQFRATEANGCPKYYCDPTFVC 283

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,605,713,976
Number of extensions: 32421391
Number of successful extensions: 67302
Number of sequences better than 10.0: 12
Number of HSP's gapped: 67269
Number of HSP's successfully gapped: 12
Length of query: 360
Length of database: 1,061,185,681
Length adjustment: 130
Effective length of query: 230
Effective length of database: 636,287,441
Effective search space: 146346111430
Effective search space used: 146346111430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.01  gvh: 0.58  alm: 0.20  top: 0.20  tms: 0.07  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for Contig-U16249-1 is end
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 0
SL (DIR, L) 10
SS (DIR, S) 51
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0