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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16248-1
Contig ID Contig-U16248-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16248-1 (Contig-U16248-1Q) /CSM_Contig/Contig-U16248-1Q.Seq.d
ACTTTTCTTTTCAAACCAACAAAGGTAAATAAATAATAAATTAAGATGTT
AACATTCAAACAATTAAAAGAAACCGAAAAATGATTTCACTGTTGATGAA
AATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAA
GAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTG
ATGGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCAT
GTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATT
TCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTA
CCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATA
CTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTG
CCGACGCTTCAGGTACCAGAGTTGGCGGTTTCACTGCTGCTAAAAATTTA
ATCATCGTTTCTGGTTATAACAAGATTGTTGATTCTGATGAATTAGCCGT
CCAAAGAACTGAACAATTCTGTTTACCATGTGAAAGTGTTCGTGCTCGTT
GGGCTTACAAAGTTCCAGGTTCAATGATTCAAAATCTTTTGGGTATGAAA
CATGGTGCTCCAAACAAACATCACATTATCCTCATTAAAAAATTATTAGG
TTATTAAATTAATAATTAAAAAAAAAAAAAAAAAAAAATAAAAACTAAAA
ATATAATACGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
Gap no gap
Contig length 815
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3690671
End point 3691485
Strand (PLUS/MINUS) PLUS
Number of clones 52
Number of EST 60
Link to clone list U16248
List of clone(s) 

est1=SSL790Z,-36,806
est2=CHL741E,1,693
est3=SHF652E,2,707
est4=CFK216Z,5,697
est5=CFK289E,12,696
est6=CHC212F,13,584
est7=CHC212Z,13,352
est8=CHL388Z,13,693
est9=CHL558Z,13,693
est10=CHQ230Z,13,706
est11=SSJ391Z,13,734
est12=CHG794Z,18,697
est13=CHQ230F,19,462
est14=SHD839E,19,703
est15=SHF256F,19,628
est16=CFB413Z,20,694
est17=CFK216F,20,550
est18=CHG794F,20,611
est19=CHK665E,20,686
est20=CHM787Z,20,693
est21=VFE226E,20,706
est22=CHL558F,21,467
est23=SHI307F,21,707
est24=SHK631E,21,703
est25=CHL388F,23,465
est26=CFH629Z,24,692
est27=SSA745F,30,318
est28=SSG747E,34,815
est29=VSJ656E,35,711
est30=SLH408F,36,703
est31=SSB112F,36,336
est32=SSE602E,36,738
est33=SLJ745F,37,363
est34=SSL817E,41,758
est35=CFB413F,42,550
est36=VSD182Z,49,711
est37=VSD182F,50,583
est38=SSB634Z,55,737
est39=SSC791Z,66,731
est40=SSI866Z,69,735
est41=SSG784Z,73,729
est42=SSK492Z,73,777
est43=SSJ610Z,86,780
est44=VSB521Z,115,724
est45=SSE341Z,119,735
est46=SSK625Z,126,739
est47=SSD726Z,131,737
est48=SSG375Z,136,734
est49=VSA243Z,142,723
est50=SSI540Z,149,782
est51=SSI794Z,180,780
est52=VSC292Z,193,718
est53=SSD394Z,254,729
est54=SSB455Z,281,778
est55=SSB682Z,306,780
est56=VSB513Z,313,809
est57=VSG834F,314,726
est58=SSE486Z,323,795
est59=SSD393Z,340,729
est60=SHD656F,633,787
Translated Amino Acid sequence 
fsfqtnkgk*iin*dvniqtikrnrkmisllmkinselhqamkp*wklsri*KPRTTEFQ
SLKMKLMALNLLLNEIPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILALPADK
QADARKDALTSQYFLSSVTAISKTGNVYVADASGTRVGGFTAAKNLIIVSGYNKIVDSDE
LAVQRTEQFCLPCESVRARWAYKVPGSMIQNLLGMKHGAPNKHHIILIKKLLGY*inn*k
kkkkkiktkniirikkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
tflfkptkvnk**ikmltfkqlketek*fhc**k*iqsctkq*nlngncqefrsqepqsf
sr*k*s*wl*iyy*mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqli
nklmlvkml*phntfyhl*lqspklemfmlptlqvpelavslllki*ssflvitrllilm
n*pskelnnsvyhvkvfvlvgltkfqvq*fkifwv*nmvlqtnitlsslkny*vikliik
kkkkkk*klki*ya*kkkkkkkkkkkkkkkk


Frame B:
lffsnqqr*innklrc*hsnn*kkpkndftvdenkfrvapsnetlmetvknleaknhrvs
vveneadgfkfiik*npkrf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**
ts*cs*rcfnltilfiicncnlqnwkclccrrfryqswrfhcc*kfnhrfwl*qdc*f**
isrpkn*tilftm*kcscslglqssrfndsksfgyetwcskqtshyph*kiirlln**lk
kkkkknkn*kynthkkkkkkkkkkkkkkkkk


Frame C:
fsfqtnkgk*iin*dvniqtikrnrkmisllmkinselhqamkp*wklsri*KPRTTEFQ
SLKMKLMALNLLLNEIPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILALPADK
QADARKDALTSQYFLSSVTAISKTGNVYVADASGTRVGGFTAAKNLIIVSGYNKIVDSDE
LAVQRTEQFCLPCESVRARWAYKVPGSMIQNLLGMKHGAPNKHHIILIKKLLGY*inn*k
kkkkkiktkniirikkkkkkkkkkkkkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16248-1 (Contig-U16248-1Q)
/CSM_Contig/Contig-U16248-1Q.Seq.d
         (815 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16248-1 (Contig-U16248-1Q) /CSM_Contig/Conti...  1421  0.0
Contig-U16137-1 (Contig-U16137-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U14938-1 (Contig-U14938-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U14350-1 (Contig-U14350-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U12590-1 (Contig-U12590-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U06643-1 (Contig-U06643-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U16565-1 (Contig-U16565-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U14481-1 (Contig-U14481-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U14456-1 (Contig-U14456-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U14018-1 (Contig-U14018-1Q) /CSM_Contig/Conti...    36  0.082

>Contig-U16248-1 (Contig-U16248-1Q) /CSM_Contig/Contig-U16248-1Q.Seq.d
          Length = 815

 Score = 1421 bits (717), Expect = 0.0
 Identities = 717/717 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttcttttcaaaccaacaaaggtaaataaataataaattaagatgttaacattcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acttttcttttcaaaccaacaaaggtaaataaataataaattaagatgttaacattcaaa 60

                                                                       
Query: 61  caattaaaagaaaccgaaaaatgatttcactgttgatgaaaataaattcagagttgcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caattaaaagaaaccgaaaaatgatttcactgttgatgaaaataaattcagagttgcacc 120

                                                                       
Query: 121 aagcaatgaaaccttaatggaaactgtcaagaatttagaagccaagaaccacagagtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagcaatgaaaccttaatggaaactgtcaagaatttagaagccaagaaccacagagtttc 180

                                                                       
Query: 181 agtcgttgaaaatgaagctgatggctttaaatttattattaaatgaaatcccaaaaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agtcgttgaaaatgaagctgatggctttaaatttattattaaatgaaatcccaaaaggtt 240

                                                                       
Query: 241 ctgaagtcatgtgcgctagcagttgtaccattgatgaaatcggtttcaagaaaatttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgaagtcatgtgcgctagcagttgtaccattgatgaaatcggtttcaagaaaatttatt 300

                                                                       
Query: 301 tcagtgatgattctccattcgtcaacgttcataaaaagattttagctttaccagctgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcagtgatgattctccattcgtcaacgttcataaaaagattttagctttaccagctgata 360

                                                                       
Query: 361 aacaagctgatgctcgtaaagatgctttaacctcacaatactttttatcatctgtaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacaagctgatgctcgtaaagatgctttaacctcacaatactttttatcatctgtaactg 420

                                                                       
Query: 421 caatctccaaaactggaaatgtttatgttgccgacgcttcaggtaccagagttggcggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caatctccaaaactggaaatgtttatgttgccgacgcttcaggtaccagagttggcggtt 480

                                                                       
Query: 481 tcactgctgctaaaaatttaatcatcgtttctggttataacaagattgttgattctgatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcactgctgctaaaaatttaatcatcgtttctggttataacaagattgttgattctgatg 540

                                                                       
Query: 541 aattagccgtccaaagaactgaacaattctgtttaccatgtgaaagtgttcgtgctcgtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aattagccgtccaaagaactgaacaattctgtttaccatgtgaaagtgttcgtgctcgtt 600

                                                                       
Query: 601 gggcttacaaagttccaggttcaatgattcaaaatcttttgggtatgaaacatggtgctc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gggcttacaaagttccaggttcaatgattcaaaatcttttgggtatgaaacatggtgctc 660

                                                                    
Query: 661 caaacaaacatcacattatcctcattaaaaaattattaggttattaaattaataatt 717
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caaacaaacatcacattatcctcattaaaaaattattaggttattaaattaataatt 717


>Contig-U16137-1 (Contig-U16137-1Q) /CSM_Contig/Contig-U16137-1Q.Seq.d
          Length = 1603

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 51  aacattcaaacaattaaaagaaa 73
           |||||| ||||||||||||||||
Sbjct: 273 aacattaaaacaattaaaagaaa 295


>Contig-U14938-1 (Contig-U14938-1Q) /CSM_Contig/Contig-U14938-1Q.Seq.d
          Length = 2366

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 429 aaaactggaaatgtttatg 447
           |||||||||||||||||||
Sbjct: 371 aaaactggaaatgtttatg 389


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,447
Number of Sequences: 8402
Number of extensions: 21447
Number of successful extensions: 2394
Number of sequences better than 10.0: 325
length of query: 815
length of database: 8,075,542
effective HSP length: 16
effective length of query: 799
effective length of database: 7,941,110
effective search space: 6344946890
effective search space used: 6344946890
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.22
Homology vs DNA 
Query= Contig-U16248-1 (Contig-U16248-1Q) /CSM_Contig/Contig-U16248-1Q.Seq.d
         (815 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU263608) Dictyostelium discoideum vegetative cDNA clone:VS...   952   0.0    2
(AU262067) Dictyostelium discoideum vegetative cDNA clone:VS...   952   0.0    2
(C92460) Dictyostelium discoideum slug cDNA, clone SSE602.        952   0.0    3
(C91338) Dictyostelium discoideum slug cDNA, clone SSK492.        952   0.0    2
(C90677) Dictyostelium discoideum slug cDNA, clone SSJ610.        952   0.0    2
(C90625) Dictyostelium discoideum slug cDNA, clone SSI866.        952   0.0    3
(C89769) Dictyostelium discoideum slug cDNA, clone SSG784.        952   0.0    3
(BJ409236) Dictyostelium discoideum cDNA clone:dds40m01, 3' ...   952   0.0    3
(BJ406524) Dictyostelium discoideum cDNA clone:dds35g14, 3' ...   952   0.0    3
(BJ405361) Dictyostelium discoideum cDNA clone:dds31n10, 3' ...   952   0.0    2
(BJ384011) Dictyostelium discoideum cDNA clone:ddc47n21, 3' ...   952   0.0    3
(BJ379762) Dictyostelium discoideum cDNA clone:ddc35l23, 3' ...   952   0.0    3
(BJ376246) Dictyostelium discoideum cDNA clone:ddc21a24, 3' ...   948   0.0    3
(BJ430915) Dictyostelium discoideum cDNA clone:ddv9c08, 3' e...   946   0.0    3
(BJ409238) Dictyostelium discoideum cDNA clone:dds40n01, 3' ...   946   0.0    3
(BJ382669) Dictyostelium discoideum cDNA clone:ddc45c15, 3' ...   946   0.0    3
(BJ382506) Dictyostelium discoideum cDNA clone:ddc44p21, 3' ...   946   0.0    3
(C84108) Dictyostelium discoideum slug cDNA, clone SSC791.        944   0.0    2
(BJ381970) Dictyostelium discoideum cDNA clone:ddc43a18, 3' ...   944   0.0    2
(BJ408315) Dictyostelium discoideum cDNA clone:dds45m08, 3' ...   940   0.0    3
(BJ376103) Dictyostelium discoideum cDNA clone:ddc21o04, 3' ...   940   0.0    3
(AU037228) Dictyostelium discoideum slug cDNA, clone SSB634.      898   0.0    3
(BJ394541) Dictyostelium discoideum cDNA clone:dds35g14, 5' ...   886   0.0    3
(BJ367647) Dictyostelium discoideum cDNA clone:ddc43a18, 5' ...   878   0.0    3
(BJ382591) Dictyostelium discoideum cDNA clone:ddc45b11, 3' ...   876   0.0    4
(BJ374804) Dictyostelium discoideum cDNA clone:ddc16i08, 3' ...   856   0.0    4
(BJ373448) Dictyostelium discoideum cDNA clone:ddc3j04, 3' e...   852   0.0    3
(AU062058) Dictyostelium discoideum slug cDNA, clone SLH408.      841   0.0    4
(BJ394329) Dictyostelium discoideum cDNA clone:dds34o14, 5' ...   819   0.0    3
(BJ397196) Dictyostelium discoideum cDNA clone:dds45m08, 5' ...   809   0.0    3
(BJ365596) Dictyostelium discoideum cDNA clone:ddc35l23, 5' ...   805   0.0    3
(BJ395792) Dictyostelium discoideum cDNA clone:dds40n01, 5' ...   751   0.0    4
(BJ393472) Dictyostelium discoideum cDNA clone:dds31n10, 5' ...   751   0.0    4
(AJ310674) Dictyostelium discoideum 3B gene for prespore-spe...   632   0.0    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   632   0.0    4
(BJ385267) Dictyostelium discoideum cDNA clone:ddc54k08, 3' ...   478   0.0    4
(AU037825) Dictyostelium discoideum slug cDNA, clone SSE341.      952   0.0    2
(C94253) Dictyostelium discoideum slug cDNA, clone SSK625.        952   0.0    2
(AU037510) Dictyostelium discoideum slug cDNA, clone SSD726.      952   0.0    2
(C94075) Dictyostelium discoideum slug cDNA, clone SSG375.        952   0.0    2
(AU261377) Dictyostelium discoideum vegetative cDNA clone:VS...   952   0.0    2
(AU270267) Dictyostelium discoideum vegetative cDNA clone:VS...   952   0.0    2
(BJ363322) Dictyostelium discoideum cDNA clone:ddc26g04, 5' ...   664   0.0    4
(C90448) Dictyostelium discoideum slug cDNA, clone SSI540.        944   0.0    2
(BJ368090) Dictyostelium discoideum cDNA clone:ddc45b11, 5' ...   666   0.0    3
(BJ362297) Dictyostelium discoideum cDNA clone:ddc21o04, 5' ...   684   0.0    3
(AU263607) Dictyostelium discoideum vegetative cDNA clone:VS...   517   0.0    4
(C90316) Dictyostelium discoideum slug cDNA, clone SSI794.        944   0.0    2
(BJ359888) Dictyostelium discoideum cDNA clone:ddc3j04, 5' e...   684   0.0    3
(BJ362429) Dictyostelium discoideum cDNA clone:ddc21a24, 5' ...   624   0.0    3
(BJ412622) Dictyostelium discoideum cDNA clone:ddv9c08, 5' e...   618   0.0    3
(AU262458) Dictyostelium discoideum vegetative cDNA clone:VS...   940   0.0    1
(AU270266) Dictyostelium discoideum vegetative cDNA clone:VS...   618   0.0    3
(C90993) Dictyostelium discoideum slug cDNA, clone SSJ391.        533   0.0    9
(C92350) Dictyostelium discoideum slug cDNA, clone SSD394.        860   0.0    1
(BJ370511) Dictyostelium discoideum cDNA clone:ddc54k08, 5' ...   509   0.0    3
(BJ368154) Dictyostelium discoideum cDNA clone:ddc45c15, 5' ...   511   0.0    3
(C93853) Dictyostelium discoideum slug cDNA, clone SSL790.        765   0.0    2
(BJ367956) Dictyostelium discoideum cDNA clone:ddc44p21, 5' ...   511   0.0    4
(AU037259) Dictyostelium discoideum slug cDNA, clone SSB682.      743   0.0    1
(AU266850) Dictyostelium discoideum vegetative cDNA clone:VS...   731   0.0    1
(AU262061) Dictyostelium discoideum vegetative cDNA clone:VS...   728   0.0    1
(AU037950) Dictyostelium discoideum slug cDNA, clone SSE486.      720   0.0    1
(C92349) Dictyostelium discoideum slug cDNA, clone SSD393.        698   0.0    1
(AU037105) Dictyostelium discoideum slug cDNA, clone SSB455.      603   0.0    2
(BJ377823) Dictyostelium discoideum cDNA clone:ddc26g04, 3' ...   278   e-167  4
(AU060442) Dictyostelium discoideum slug cDNA, clone SLJ745.      299   e-164  3
(C93875) Dictyostelium discoideum slug cDNA, clone SSL817.        299   e-140  8
(AU072745) Dictyostelium discoideum slug cDNA, clone SSA745.      242   e-119  3
(AU071280) Dictyostelium discoideum slug cDNA, clone SSB112.      242   e-119  3
(AU073349) Dictyostelium discoideum slug cDNA, clone SSG747.      242   e-113  4
(C89748) Dictyostelium discoideum slug cDNA, clone SSG747.        178   2e-40  1
(BJ393541) Dictyostelium discoideum cDNA clone:dds31o14, 5' ...   111   4e-20  1
(C90992) Dictyostelium discoideum slug cDNA, clone SSJ390.         54   2e-19  3
(AC161990) Bos taurus clone CH240-108O8, WORKING DRAFT SEQUE...    50   0.13   1
(AC146553) Medicago truncatula clone mth2-9e24, complete seq...    34   0.30   2
(AC164395) Medicago truncatula clone mth2-69h11, complete se...    34   0.30   2
(BY565063) Mus musculus activated spleen cDNA, RIKEN full-le...    48   0.52   1
(AC135415) Medicago truncatula clone mth2-10b9, complete seq...    40   0.79   4
(AC111584) Rattus norvegicus clone CH230-89D22, *** SEQUENCI...    32   1.0    2
(AC114388) Rattus norvegicus clone CH230-13L4, *** SEQUENCIN...    32   1.1    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    38   1.1    4
(AM469473) Vitis vinifera contig VV78X242118.10, whole genom...    46   1.9    2
(AC169129) Mus musculus BAC clone RP23-259N3 from chromosome...    46   2.0    1
(AC149214) Mus musculus BAC clone RP24-230G21 from 7, comple...    46   2.0    1
(AM475343) Vitis vinifera contig VV78X046548.21, whole genom...    46   2.0    1
(AM434333) Vitis vinifera contig VV78X225596.7, whole genome...    46   2.0    1
(AC132736) Rattus norvegicus clone CH230-49A10, *** SEQUENCI...    46   2.0    1
(AC124865) Rattus norvegicus clone CH230-5H6, *** SEQUENCING...    46   2.0    1
(CU638842) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.0    1
(CU469436) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.0    1
(AC224058) Bos taurus clone CH240-451F11, WORKING DRAFT SEQU...    46   2.0    1
(AC201123) Strongylocentrotus purpuratus clone R3-13P15, WOR...    46   2.0    1
(AC179338) Strongylocentrotus purpuratus clone R3-1102G22, W...    46   2.0    1
(EL361776) CCEM6372.b1_G10.ab1 CCE(LMS) endive Cichorium end...    46   2.0    1
(AI952161) wx48h05.x1 NCI_CGAP_Lu28 Homo sapiens cDNA clone ...    46   2.0    1
(Z83849) Human DNA sequence from clone CITF22-65B7 on chromo...    38   2.1    2
(BX294114) Zebrafish DNA sequence from clone DKEY-152J12 in ...    36   2.2    5
(CR352215) Zebrafish DNA sequence from clone CH211-235F1 in ...    44   3.3    2
(AR376368) Sequence 1374 from patent US 6605709.                   42   3.4    2
(AC184938) Bos taurus clone CH240-310D22, WORKING DRAFT SEQU...    38   3.6    4
(AC195275) Pan troglodytes BAC clone CH251-376E15 from chrom...    34   3.8    6
(AC192738) Pan troglodytes BAC clone CH251-268N16 from chrom...    34   3.9    6
(AC104642) Trypanosoma brucei chromosome 3 clone RPCI93-27C5...    32   4.0    2
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    42   4.8    5
(DU439538) 1098421042349 CHORI-243 Ovis aries genomic clone ...    32   5.2    2
(BB979815) Plasmodium berghei str. ANKA cDNA clone: OK009927...    34   5.3    2
(AL472343) T. brucei sheared genomic DNA clone 161a04, rever...    32   5.3    2
(AL497230) T. brucei sheared genomic DNA clone 321d05, rever...    32   5.4    2
(DC228672) Plasmodium berghei strain ANKA cDNA clone:SG01308...    34   5.4    2
(CT505762) A BAC library has been constructed from cultivar ...    36   5.5    2
(ER287331) 1092343579314 Global-Ocean-Sampling_GS-34-01-01-1...    36   6.0    3
(DW614422) CLJ280-F12.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    34   6.3    2
(DW630775) CLJ357-I20.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    34   6.4    2
(DW614560) CLJ281-E06.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    34   7.1    2
(DV001396) CNB212-F02.x1d-t SHGC-CNB Gasterosteus aculeatus ...    34   7.2    2
(DX539456) GH_MBb0037P23r GH_MBb Gossypium hirsutum genomic ...    40   7.3    2
(DV009335) CNB257-C03.x1d-t SHGC-CNB Gasterosteus aculeatus ...    34   7.4    2
(DV013969) CNB283-C07.x1d-t SHGC-CNB Gasterosteus aculeatus ...    34   7.4    2
(BX571723) Zebrafish DNA sequence from clone DKEYP-51D5 in l...    36   7.6    7
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      44   8.1    1
(BV284298) S232P6195FD11.T0 Beagle Canis familiaris STS geno...    44   8.1    1
(AC153014) Mus musculus BAC clone RP23-203I6 from chromosome...    44   8.1    1
(AC148920) Mus musculus BAC clone RP23-273O10 from chromosom...    44   8.1    1
(AC131737) Mus musculus BAC clone RP23-106E9 from 7, complet...    44   8.1    1
(AC108568) Rattus norvegicus  BAC CH230-60D21 (Children's Ho...    44   8.1    1
(AC107648) Mus musculus chromosome 19, clone RP23-126M4, com...    44   8.1    1
(CR382134) Debaryomyces hansenii strain CBS767 chromosome B ...    44   8.1    1
(AP009253) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   8.1    1
(AM441617) Vitis vinifera contig VV78X062997.3, whole genome...    44   8.1    1
(AC152560) Mus musculus chromosome 19 clone RP23-235O5, *** ...    44   8.1    1
(AC137413) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    44   8.1    1
(AC137411) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    44   8.1    1
(AC136792) Rattus norvegicus clone CH230-405G3, *** SEQUENCI...    44   8.1    1
(AC112812) Rattus norvegicus clone CH230-33G16, *** SEQUENCI...    44   8.1    1
(AC110403) Rattus norvegicus clone CH230-51H1, WORKING DRAFT...    44   8.1    1
(AC099160) Rattus norvegicus clone CH230-49M20, WORKING DRAF...    44   8.1    1
(AC099154) Rattus norvegicus clone CH230-69D17, WORKING DRAF...    44   8.1    1
(AC098328) Rattus norvegicus clone CH230-1M10, WORKING DRAFT...    44   8.1    1
(AC095937) Rattus norvegicus clone CH230-10F3, WORKING DRAFT...    44   8.1    1
(FP091236) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.1    1
(FP085485) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.1    1
(AP010023) Lotus japonicus genomic DNA, clone: LjT46I09, TM0...    44   8.1    1
(AC233190) Colobus guereza clone CH272-345G13, WORKING DRAFT...    44   8.1    1
(AC191196) Colobus guereza clone CH272-267F14, WORKING DRAFT...    44   8.1    1
(AC185390) Felis catus clone RP86-148O2, WORKING DRAFT SEQUE...    44   8.1    1
(AC181993) Myotis lucifugus clone CH235-294E2, WORKING DRAFT...    44   8.1    1
(BH152168) ENTPP96TR Entamoeba histolytica Sheared DNA Entam...    44   8.1    1
(AZ676618) ENTHG52TFB Entamoeba histolytica Sheared DNA Enta...    44   8.1    1
(FI248312) CccaBb006-J8JF CccABb Cajanus cajan genomic clone...    44   8.1    1
(ER940323) AF__Bb0050P07r AF__Bb Aquilegia formosa genomic, ...    44   8.1    1
(EK052028) 1092959713757 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.1    1
(AM680334) Entamoeba terrapinae GSS, clone terra176f02.p1k.        44   8.1    1
(AM662160) Entamoeba moshkovskii FIC GSS, clone mosh118e08.p1k.    44   8.1    1
(ED298228) AUAC-aao71a04.g1 Ascaris suum whole genome shotgu...    44   8.1    1
(AL436295) T7 end of clone BC0AA002E09 of library BC0AA from...    44   8.1    1
(AL436278) T7 end of clone BC0AA002D12 of library BC0AA from...    44   8.1    1
(CU258389) Equus caballus GSS, BAC clone CH241-405G13, SP6 e...    44   8.1    1
(AG938092) Drosophila ananassae DNA, clone: DNB1-007P06.F.fa...    44   8.1    1
(CC251271) CH261-129M6_Sp6.1 CH261 Gallus gallus genomic clo...    44   8.1    1
(CC214703) CH261-116K4_RM1.1 CH261 Gallus gallus genomic clo...    44   8.1    1
(EB947485) 13638735 ZF34XL Danio rerio cDNA clone 3855738, m...    44   8.1    1
(DV432376) NADD239TR Aedes aegypti infected with Dengue viru...    44   8.1    1
(DA828158) Homo sapiens cDNA clone PLACE1000555, 5' end, mRN...    44   8.1    1
(BY948567) Physcomitrella patens subsp. patens cDNA clone: P...    44   8.1    1
(BE340974) EST345063 potato stolon, Cornell University Solan...    44   8.1    1
(BB896309) Macaca fascicularis cDNA clone: Qlv-U131A-F2, 3'e...    44   8.1    1
(FL993384) CCHY22468.g1 CCHY Panicum virgatum callus (N) Pan...    44   8.1    1
(FL993383) CCHY22468.b1 CCHY Panicum virgatum callus (N) Pan...    44   8.1    1
(AC192704) Spermophilus tridecemlineatus clone VMRC20-424G21...    36   8.3    5
(DN736002) CNB84-D08.x1d-t SHGC-CNB Gasterosteus aculeatus c...    34   8.8    2
(AQ342227) RPCI11-124C10.TV RPCI-11 Homo sapiens genomic clo...    38   9.7    2
(EU358889) Cryptosiphum artemisiae 12S small subunit ribosom...    34   9.9    2
(AM448685) Vitis vinifera contig VV78X216602.1, whole genome...    38   9.9    2

>(AU263608) Dictyostelium discoideum vegetative cDNA clone:VSD182,
           3' end single read.
          Length = 664

 Score =  952 bits (480), Expect(2) = 0.0
 Identities = 480/480 (100%)
 Strand = Plus / Plus


Query: 204 gctttaaatttattattaaatgaaatcccaaaaggttctgaagtcatgtgcgctagcagt 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gctttaaatttattattaaatgaaatcccaaaaggttctgaagtcatgtgcgctagcagt 214


Query: 264 tgtaccattgatgaaatcggtttcaagaaaatttatttcagtgatgattctccattcgtc 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgtaccattgatgaaatcggtttcaagaaaatttatttcagtgatgattctccattcgtc 274


Query: 324 aacgttcataaaaagattttagctttaccagctgataaacaagctgatgctcgtaaagat 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aacgttcataaaaagattttagctttaccagctgataaacaagctgatgctcgtaaagat 334


Query: 384 gctttaacctcacaatactttttatcatctgtaactgcaatctccaaaactggaaatgtt 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gctttaacctcacaatactttttatcatctgtaactgcaatctccaaaactggaaatgtt 394


Query: 444 tatgttgccgacgcttcaggtaccagagttggcggtttcactgctgctaaaaatttaatc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tatgttgccgacgcttcaggtaccagagttggcggtttcactgctgctaaaaatttaatc 454


Query: 504 atcgtttctggttataacaagattgttgattctgatgaattagccgtccaaagaactgaa 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atcgtttctggttataacaagattgttgattctgatgaattagccgtccaaagaactgaa 514


Query: 564 caattctgtttaccatgtgaaagtgttcgtgctcgttgggcttacaaagttccaggttca 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caattctgtttaccatgtgaaagtgttcgtgctcgttgggcttacaaagttccaggttca 574


Query: 624 atgattcaaaatcttttgggtatgaaacatggtgctccaaacaaacatcacattatcctc 683
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atgattcaaaatcttttgggtatgaaacatggtgctccaaacaaacatcacattatcctc 634

 Score =  297 bits (150), Expect(2) = 0.0
 Identities = 153/154 (99%)
 Strand = Plus / Plus


Query: 50  taacattcaaacaattaaaagaaaccgaaaaatgatttcactgttgatgaaaataaattc 109
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2   taacattcaaacaattaaaagaaaccgaaaaaagatttcactgttgatgaaaataaattc 61


Query: 110 agagttgcaccaagcaatgaaaccttaatggaaactgtcaagaatttagaagccaagaac 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  agagttgcaccaagcaatgaaaccttaatggaaactgtcaagaatttagaagccaagaac 121


Query: 170 cacagagtttcagtcgttgaaaatgaagctgatg 203
           ||||||||||||||||||||||||||||||||||
Sbjct: 122 cacagagtttcagtcgttgaaaatgaagctgatg 155

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 941,654,280
Number of extensions: 62430997
Number of successful extensions: 5178907
Number of sequences better than 10.0: 174
Length of query: 815
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 791
Effective length of database: 96,409,374,237
Effective search space: 76259815021467
Effective search space used: 76259815021467
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.27
Homology vs Protein 
Query= Contig-U16248-1 (Contig-U16248-1Q) /CSM_Contig/Contig-U16248-1Q.Seq.d
         (815 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115605_5(AC115605|pid:none) Dictyostelium discoideum chromosom...   153   3e-43
AC115605_4(AC115605|pid:none) Dictyostelium discoideum chromosom...   155   4e-43
AY596296_161(AY596296|pid:none) Haloarcula marismortui ATCC 4304...    92   2e-20
AM412317_887(AM412317|pid:none) Clostridium botulinum A str. ATC...    65   3e-09
CP001083_859(CP001083|pid:none) Clostridium botulinum Ba4 str. 6...    65   3e-09
AE015927_490(AE015927|pid:none) Clostridium tetani E88, complete...    62   2e-08
CP001393_1815(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    53   5e-07
BA000016_2602(BA000016|pid:none) Clostridium perfringens str. 13...    57   7e-07
CP000885_3236(CP000885|pid:none) Clostridium phytofermentans ISD...    56   1e-06
CP001393_2285(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    56   2e-06
CP001197_25(CP001197|pid:none) Desulfovibrio vulgaris str. 'Miya...    55   3e-06
CP000312_2508(CP000312|pid:none) Clostridium perfringens SM101, ...    54   5e-06
CP000246_2818(CP000246|pid:none) Clostridium perfringens ATCC 13...    54   5e-06
AM180355_1561(AM180355|pid:none) Clostridium difficile 630 compl...    52   2e-05
CP001098_1344(CP001098|pid:none) Halothermothrix orenii H 168, c...    52   2e-05
AP008230_157(AP008230|pid:none) Desulfitobacterium hafniense Y51...    51   4e-05
CP000361_1543(CP000361|pid:none) Arcobacter butzleri RM4018, com...    50   1e-04
CP000721_2838(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    50   1e-04
AP009389_2644(AP009389|pid:none) Pelotomaculum thermopropionicum...    49   2e-04
CP001390_601(CP001390|pid:none) Geobacter sp. FRC-32, complete g...    49   2e-04
CP000568_755(CP000568|pid:none) Clostridium thermocellum ATCC 27...    48   3e-04
AE000512_151(AE000512|pid:none) Thermotoga maritima MSB8, comple...    46   0.001
AJ872273_7(AJ872273|pid:none) Thermotoga sp. RQ2 16S rRNA gene, ...    46   0.001
CP000702_763(CP000702|pid:none) Thermotoga petrophila RKU-1, com...    45   0.004
CP000745_1412(CP000745|pid:none) Methanococcus maripaludis C7, c...    44   0.005
CP000859_1228(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ...    44   0.005
CP000609_1193(CP000609|pid:none) Methanococcus maripaludis C5, c...    43   0.014
CP000867_478(CP000867|pid:none) Methanococcus maripaludis C6, co...    42   0.019
CP000742_1391(CP000742|pid:none) Methanococcus vannielii SB, com...    42   0.019
CP001634_574(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co...    41   0.041
CP000350_53(CP000350|pid:none) Leptospira borgpetersenii serovar...    38   0.46
AE010300_70(AE010300|pid:none) Leptospira interrogans serovar la...    36   1.3
CP000792_31(CP000792|pid:none) Campylobacter concisus 13826, com...    36   1.7

>AC115605_5(AC115605|pid:none) Dictyostelium discoideum chromosome 2
           map 5817431-5836155 strain AX4, complete sequence.
          Length = 226

 Score =  153 bits (386), Expect(2) = 3e-43
 Identities = 86/145 (59%), Positives = 102/145 (70%), Gaps = 2/145 (1%)
 Frame = +3

Query: 228 IPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILA-LPADKQADARKDALTSQYF 404
           IP  S VM A S T+DEIGFK  YFSD+  + N+HKKI A   + KQ   RK AL   YF
Sbjct: 62  IPDKSTVMGAGSVTLDEIGFKSYYFSDNHKWDNLHKKIFAETDSGKQIILRKHALACDYF 121

Query: 405 LSSVTAISKTGNVYVADASGTRVGGFTAAKNLIIVSGYNKIVDSDELAVQRTEQFCLPCE 584
           LSSV AISK G+++VADASGTRVGGFTAA NLI+V+G NKIV+S+   V+R   FC  CE
Sbjct: 122 LSSVGAISKQGDLFVADASGTRVGGFTAANNLIVVAGLNKIVESESDGVKRATGFCYQCE 181

Query: 585 SVRARWAYK-VPGSMIQNLLGMKHG 656
           SVRAR AY  V GS++QN   +K G
Sbjct: 182 SVRARKAYPGVAGSIVQNFAQIKFG 206

 Score = 46.2 bits (108), Expect(2) = 3e-43
 Identities = 25/56 (44%), Positives = 35/56 (62%)
 Frame = +2

Query: 71  KPKNDFTVDENKFRVAPSNETLMETVKNLEAKNHRVSVVENEADGFKFIIK*NPKR 238
           KP+N       KFR+ PS E L ET+K+LE+KNH+V +V+NE    + I K  P +
Sbjct: 15  KPEN-----AEKFRLMPSEELLNETIKSLESKNHKVLLVDNEETALEEIKKMIPDK 65

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,162,903,708
Number of extensions: 21391760
Number of successful extensions: 48434
Number of sequences better than 10.0: 33
Number of HSP's gapped: 48411
Number of HSP's successfully gapped: 37
Length of query: 271
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 145
Effective length of database: 649,361,233
Effective search space: 94157378785
Effective search space used: 94157378785
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.79  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U16248-1 is nuc
VS (DIR, S) 7
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 24
SH (FL, L) 6
SF (FL, S) 0
CH (FL, L) 8
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0