Contig-U16238-1
Contig ID Contig-U16238-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16238-1 (Contig-U16238-1Q) /CSM_Contig/Contig-U16238-1Q.Seq.d
TCTTTTGTATTATTTTAAATTGCTTTGGTTTTCTCTATTTCTTTTTT
TTTTTTTTGTTGTAATATCATATAAATATTTATATATATATATAATATAG
TAAATNAAAATGGATGAACCATTATTTGGAGAGACCATTATTTGGAGAGA
GAAAGAAACAAACACAAATTTCTCAAATTATTATTTCTATAATTGTTGCA
GCTTTTTCATTGTTCTCAATAGCAATTGGTGTATATTTTGGAATTAAAGT
AAATGCAAGACATTTTGTATTAGTTGGTACTATTATTGTTATATTTGGAT
CATTAGCCTTATTAGTTAAATGGTGGAGAGATCAAGATGATAGAATTCAT
CCAAAATTCAAATACCTTATCTTCCTTTTAGCTGGTTGTGTAATTTTAGC
TTCAATTTCACTCAATTGTTATGTTTGGGTACCAAAAGCACTCACTTGTA
ATGGTTTATATACATTTGAAAATAAAACATGTATATCTGTTCAAGATCCA
TCTTCATGTTCCATGTGGTTTAACTTATGATCCAGTTCAATTGGAAGGTC
TATTGTACAGAATACTGGTCCACCACCACCCAGATTCTGGGTAGTAATAA
ATTCCCATCCATCTTCTGGGTAAAAAGCTTGATGGAATTCGGATCCTGGA
ATACCGATATATTTAATTATGATTCAAATTAATTTAATCGAAAATTAAAA
TTATTTAGAAAAAAATAAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAA
ATAAAAAAATTTTTTAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

Gap no gap
Contig length 800
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5836163
End point 5835362
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U16238
List of clone(s)

est1=SSC426E,1,800
est2=SSE614E,14,533
est3=FC-BP21Z,103,768
Translated Amino Acid sequence
fciilncfgflyfffffll*yhiniyiyi*YSKXKWMNHYLERPLFGERKKQTQISQIII
SIIVAAFSLFSIAIGVYFGIKVNARHFVLVGTIIVIFGSLALLVKWWRDQDDRIHPKFKY
LIFLLAGCVILASISLNCYVWVPKALTCNGLYTFENKTCISVQDPSSCSMWFNL*sssig
rsivqntgpppprfwvvinshpssg*ka*wnsdpgipiylimiqinlien*nyleknkki
kkk*kkkknkkif*kikkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
sfvlf*ialvfsisffffccnii*ifiyiynivnxng*tiiwrdhylerernkhkflkll
fl*llqlfhcsq*qlvyilelk*mqdily*lvllllyldh*py*lnggeikmiefiqnsn
tlssf*lvv*f*lqfhsivmfgyqkhslvmvyihlkikhvylfkihlhvpcgltydpvql
egllyrilvhhhpdsg***ipihllgkkldgirileyryi*l*fkli*skikii*kkikk
*kknkkkkkikkffkklkkkkkkkkk


Frame B:
llyyfkllwfslflffffvvisykylyiyii**xkmdeplfgetiiwreketntnfsnyy
fynccsffivlnsnwcifwn*skcktfciswyyycyiwiislis*mversr**nsskiqi
pylpfswlcnfsfnftqllclgtksthl*wfiyi*k*nmyicsrsifmfhvv*lmiqfnw
kvycteywstttqilgsnkfpsifwvkslmefgswntdifnydsn*fnrklklfrkk*kn
kkkikkkkk*knflkn*kkkkkkkkk


Frame C:
fciilncfgflyfffffll*yhiniyiyi*YSKXKWMNHYLERPLFGERKKQTQISQIII
SIIVAAFSLFSIAIGVYFGIKVNARHFVLVGTIIVIFGSLALLVKWWRDQDDRIHPKFKY
LIFLLAGCVILASISLNCYVWVPKALTCNGLYTFENKTCISVQDPSSCSMWFNL*sssig
rsivqntgpppprfwvvinshpssg*ka*wnsdpgipiylimiqinlien*nyleknkki
kkk*kkkknkkif*kikkkkkkkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16238-1 (Contig-U16238-1Q)
/CSM_Contig/Contig-U16238-1Q.Seq.d
(800 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16238-1 (Contig-U16238-1Q) /CSM_Contig/Conti... 1201 0.0
Contig-U15918-1 (Contig-U15918-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U15003-1 (Contig-U15003-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U14928-1 (Contig-U14928-1Q) /CSM_Contig/Conti... 36 0.080
Contig-U13627-1 (Contig-U13627-1Q) /CSM_Contig/Conti... 36 0.080
Contig-U11493-1 (Contig-U11493-1Q) /CSM_Contig/Conti... 36 0.080
Contig-U09724-1 (Contig-U09724-1Q) /CSM_Contig/Conti... 36 0.080
Contig-U02675-1 (Contig-U02675-1Q) /CSM_Contig/Conti... 36 0.080
Contig-U15287-1 (Contig-U15287-1Q) /CSM_Contig/Conti... 34 0.32
Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Conti... 34 0.32

>Contig-U16238-1 (Contig-U16238-1Q) /CSM_Contig/Contig-U16238-1Q.Seq.d
Length = 800

Score = 1201 bits (606), Expect = 0.0
Identities = 609/609 (100%)
Strand = Plus / Plus


Query: 97 gtaaatnaaaatggatgaaccattatttggagagaccattatttggagagagaaagaaac 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gtaaatnaaaatggatgaaccattatttggagagaccattatttggagagagaaagaaac 156


Query: 157 aaacacaaatttctcaaattattatttctataattgttgcagctttttcattgttctcaa 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aaacacaaatttctcaaattattatttctataattgttgcagctttttcattgttctcaa 216


Query: 217 tagcaattggtgtatattttggaattaaagtaaatgcaagacattttgtattagttggta 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tagcaattggtgtatattttggaattaaagtaaatgcaagacattttgtattagttggta 276


Query: 277 ctattattgttatatttggatcattagccttattagttaaatggtggagagatcaagatg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctattattgttatatttggatcattagccttattagttaaatggtggagagatcaagatg 336


Query: 337 atagaattcatccaaaattcaaataccttatcttccttttagctggttgtgtaattttag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atagaattcatccaaaattcaaataccttatcttccttttagctggttgtgtaattttag 396


Query: 397 cttcaatttcactcaattgttatgtttgggtaccaaaagcactcacttgtaatggtttat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cttcaatttcactcaattgttatgtttgggtaccaaaagcactcacttgtaatggtttat 456


Query: 457 atacatttgaaaataaaacatgtatatctgttcaagatccatcttcatgttccatgtggt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atacatttgaaaataaaacatgtatatctgttcaagatccatcttcatgttccatgtggt 516


Query: 517 ttaacttatgatccagttcaattggaaggtctattgtacagaatactggtccaccaccac 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttaacttatgatccagttcaattggaaggtctattgtacagaatactggtccaccaccac 576


Query: 577 ccagattctgggtagtaataaattcccatccatcttctgggtaaaaagcttgatggaatt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccagattctgggtagtaataaattcccatccatcttctgggtaaaaagcttgatggaatt 636


Query: 637 cggatcctggaataccgatatatttaattatgattcaaattaatttaatcgaaaattaaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cggatcctggaataccgatatatttaattatgattcaaattaatttaatcgaaaattaaa 696


Query: 697 attatttag 705
|||||||||
Sbjct: 697 attatttag 705


Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus


Query: 1 tcttttgtattattttaaattgctttggttttctctatttc 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttttgtattattttaaattgctttggttttctctatttc 41


>Contig-U15918-1 (Contig-U15918-1Q) /CSM_Contig/Contig-U15918-1Q.Seq.d
Length = 1467

Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 409 tcaattgttatgtttgggt 427
|||||||||||||||||||
Sbjct: 728 tcaattgttatgtttgggt 746


>Contig-U15003-1 (Contig-U15003-1Q) /CSM_Contig/Contig-U15003-1Q.Seq.d
Length = 1308

Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 172 aaattattatttctataat 190
|||||||||||||||||||
Sbjct: 226 aaattattatttctataat 208


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,005
Number of Sequences: 8402
Number of extensions: 17005
Number of successful extensions: 1712
Number of sequences better than 10.0: 161
length of query: 800
length of database: 8,075,542
effective HSP length: 16
effective length of query: 784
effective length of database: 7,941,110
effective search space: 6225830240
effective search space used: 6225830240
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.22
Homology vs DNA
Query= Contig-U16238-1 (Contig-U16238-1Q) /CSM_Contig/Contig-U16238-1Q.Seq.d
(800 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU051933) Dictyostelium discoideum slug cDNA, clone SSC426. 920 0.0 2
(AU284918) Dictyostelium discoideum gamete cDNA clone:FC-BP2... 668 0.0 6
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 470 0.0 9
(C92472) Dictyostelium discoideum slug cDNA, clone SSE614. 573 e-180 5
(CP000020) Vibrio fischeri ES114 chromosome I, complete sequ... 52 0.032 1
(CR382138) Debaryomyces hansenii strain CBS767 chromosome F ... 50 0.13 1
(BX323860) Human DNA sequence from clone RP11-552D4 on chrom... 48 0.51 1
(AU071742) Dictyostelium discoideum slug cDNA, clone SSC426. 32 0.69 3
(AL592430) Human DNA sequence from clone RP11-388P9 on chrom... 38 0.71 3
(EK022748) 1092955342268 Global-Ocean-Sampling_GS-31-01-01-1... 32 1.4 2
(EK023990) 1092955350886 Global-Ocean-Sampling_GS-31-01-01-1... 32 1.4 2
(AL845542) Mouse DNA sequence from clone RP23-288I12 on chro... 46 2.0 1
(AC114823) Mus musculus BAC clone RP23-209L10 from 2, comple... 46 2.0 1
(AM438526) Vitis vinifera contig VV78X224268.7, whole genome... 46 2.0 1
(AC158028) Bos taurus clone CH240-138A18, *** SEQUENCING IN ... 46 2.0 1
(AC156876) Bos taurus clone CH240-63M11, WORKING DRAFT SEQUE... 46 2.0 1
(AC134340) Mus musculus chromosome UNK clone RP23-70F20, WOR... 46 2.0 1
(AC094741) Rattus norvegicus clone CH230-5C12, *** SEQUENCIN... 46 2.0 1
(CU326338) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1
(AC180235) Strongylocentrotus purpuratus clone R3-36L07, WOR... 46 2.0 1
(AC165773) Bos taurus clone CH240-160E11, WORKING DRAFT SEQU... 46 2.0 1
(BH374659) AG-ND-119O20.TF ND-TAM Anopheles gambiae genomic ... 46 2.0 1
(AZ979182) 2M0255I14R Mouse 10kb plasmid UUGC2M library Mus ... 46 2.0 1
(AZ954756) 2M0220N05R Mouse 10kb plasmid UUGC2M library Mus ... 46 2.0 1
(ER972231) AF__Bc0058E08r AF__Bc Aquilegia formosa genomic, ... 46 2.0 1
(ER742185) SB_BBc146-N18.R SB_BBc Sorghum bicolor genomic 3'... 46 2.0 1
(ER723321) SB_BBc284-J14.R SB_BBc Sorghum bicolor genomic 3'... 46 2.0 1
(EI990962) SB_BBc88-C15.F SB_BBc Sorghum bicolor genomic 5',... 46 2.0 1
(EI968810) SB_BBc64-H07.F SB_BBc Sorghum bicolor genomic 5',... 46 2.0 1
(CW429743) fsbb001f143c11f0 Sorghum methylation filtered lib... 46 2.0 1
(CW083952) 104_426_10945483_114_32376_074 Sorghum methylatio... 46 2.0 1
(CW062348) 104_307_10521289_1_30043 Sorghum methylation filt... 46 2.0 1
(DT769112) EST1202962 Aquilegia cDNA library Aquilegia formo... 46 2.0 1
(DT765721) EST1199570 Aquilegia cDNA library Aquilegia formo... 46 2.0 1
(DT760409) EST1194258 Aquilegia cDNA library Aquilegia formo... 46 2.0 1
(DT753653) EST1187502 Aquilegia cDNA library Aquilegia formo... 46 2.0 1
(DR922919) EST1114458 Aquilegia cDNA library Aquilegia formo... 46 2.0 1
(DR920340) EST1111879 Aquilegia cDNA library Aquilegia formo... 46 2.0 1
(DR915035) EST1106574 Aquilegia cDNA library Aquilegia formo... 46 2.0 1
(AC193976) Zea mays chromosome unknown clone ZMMBBb-127H1; Z... 38 2.7 2
(BX537139) Zebrafish DNA sequence from clone DKEY-46K9 in li... 36 3.4 4
(AC202161) Zea mays chromosome 1 clone CH201-397L6; ZMMBBc03... 38 3.6 5
(AC205471) Zea mays chromosome 8 clone CH201-479F12; ZMMBBc0... 38 4.0 2
(CN626330) tae97e02.x1 Hydra EST Darmstadt I Hydra magnipapi... 32 5.2 2
(AC176343) Strongylocentrotus purpuratus clone R3-3054A19, W... 40 5.3 4
(EU795214) Uncultured bacterium HF0130_05G09 genomic sequence. 42 5.3 4
(CN622950) tad97f04.x1 Hydra EST Darmstadt I Hydra magnipapi... 32 5.3 2
(AC126043) Mus musculus BAC clone RP24-356N5 from chromosome... 44 7.9 1
(AC123682) Mus musculus chromosome 15, clone RP23-288J22, co... 44 7.9 1
(AC122538) Mus musculus BAC clone RP24-548J11 from 16, compl... 44 7.9 1
(AF138704) Pisum sativum gibberellin c20-oxidase gene, compl... 44 7.9 1
(AX346603) Sequence 1674 from Patent WO0200928. 44 7.9 1
(AC161301) Atelerix albiventris clone LB4-69D14, WORKING DRA... 44 7.9 1
(AC157643) Rhinolophus ferrumequinum clone VMRC7-218M22, WOR... 44 7.9 1
(AC153408) Bos taurus clone CH240-21E8, WORKING DRAFT SEQUEN... 44 7.9 1
(AC131879) Rattus norvegicus clone CH230-86I14, *** SEQUENCI... 44 7.9 1
(AC098034) Rattus norvegicus clone CH230-194A3, *** SEQUENCI... 44 7.9 1
(AC095295) Rattus norvegicus clone CH230-12A9, *** SEQUENCIN... 44 7.9 1
(AL844507) Plasmodium falciparum chromosome 8. 44 7.9 1
(AC231006) Bos taurus clone CH240-493M15, WORKING DRAFT SEQU... 44 7.9 1
(AC201300) Strongylocentrotus purpuratus clone R3-16I10, WOR... 44 7.9 1
(AZ007515) RPCI-23-322P10.TV RPCI-23 Mus musculus genomic cl... 44 7.9 1
(EK111915) 1092963120687 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.9 1
(EJ237540) 1095313004193 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.9 1
(CW430561) fsbb001f144e23f0 Sorghum methylation filtered lib... 44 7.9 1
(EE590064) AFS-PLATE03_G03 Adult female Anopheles funestus s... 44 7.9 1
(EB724121) PMAO-aab82b01.g1 Lamprey_EST_Embryo Petromyzon ma... 44 7.9 1
(DB795359) Sus scrofa mRNA, clone:DCI010065D10, 5' end, expr... 44 7.9 1
(AI506987) vl55a05.x1 Stratagene mouse skin (#937313) Mus mu... 44 7.9 1
(FE788190) CCAG15966.g1 CCAG Petrolisthes cinctipes heart, g... 44 7.9 1
(EY764559) CR05-C1-100-046-G02-CT.F Mandarin leaf, greenhous... 44 7.9 1
(EY762810) CR05-C1-100-058-H12-CT.F Mandarin leaf, greenhous... 44 7.9 1
(EV479053) Fc_nor_77H05_M13F Folsomia candida normalized cDN... 44 7.9 1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 44 7.9 1
(AC203052) Zea mays chromosome 4 clone CH201-346B18; ZMMBBc0... 38 8.3 3

>(AU051933) Dictyostelium discoideum slug cDNA, clone SSC426.
Length = 770

Score = 920 bits (464), Expect(2) = 0.0
Identities = 464/464 (100%)
Strand = Plus / Minus


Query: 131 accattatttggagagagaaagaaacaaacacaaatttctcaaattattatttctataat 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 accattatttggagagagaaagaaacaaacacaaatttctcaaattattatttctataat 532


Query: 191 tgttgcagctttttcattgttctcaatagcaattggtgtatattttggaattaaagtaaa 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgttgcagctttttcattgttctcaatagcaattggtgtatattttggaattaaagtaaa 472


Query: 251 tgcaagacattttgtattagttggtactattattgttatatttggatcattagccttatt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgcaagacattttgtattagttggtactattattgttatatttggatcattagccttatt 412


Query: 311 agttaaatggtggagagatcaagatgatagaattcatccaaaattcaaataccttatctt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agttaaatggtggagagatcaagatgatagaattcatccaaaattcaaataccttatctt 352


Query: 371 ccttttagctggttgtgtaattttagcttcaatttcactcaattgttatgtttgggtacc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccttttagctggttgtgtaattttagcttcaatttcactcaattgttatgtttgggtacc 292


Query: 431 aaaagcactcacttgtaatggtttatatacatttgaaaataaaacatgtatatctgttca 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aaaagcactcacttgtaatggtttatatacatttgaaaataaaacatgtatatctgttca 232


Query: 491 agatccatcttcatgttccatgtggtttaacttatgatccagttcaattggaaggtctat 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 agatccatcttcatgttccatgtggtttaacttatgatccagttcaattggaaggtctat 172


Query: 551 tgtacagaatactggtccaccaccacccagattctgggtagtaa 594
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tgtacagaatactggtccaccaccacccagattctgggtagtaa 128

Score = 129 bits (65), Expect(2) = 0.0
Identities = 65/65 (100%)
Strand = Plus / Minus


Query: 593 aataaattcccatccatcttctgggtaaaaagcttgatggaattcggatcctggaatacc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aataaattcccatccatcttctgggtaaaaagcttgatggaattcggatcctggaatacc 69


Query: 653 gatat 657
|||||
Sbjct: 68 gatat 64

Score = 63.9 bits (32), Expect = 9e-06
Identities = 35/35 (100%)
Strand = Plus / Minus


Query: 97 gtaaatnaaaatggatgaaccattatttggagaga 131
|||||||||||||||||||||||||||||||||||
Sbjct: 609 gtaaatnaaaatggatgaaccattatttggagaga 575

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 758,860,060
Number of extensions: 49791377
Number of successful extensions: 4339874
Number of sequences better than 10.0: 75
Length of query: 800
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 776
Effective length of database: 96,409,374,237
Effective search space: 74813674407912
Effective search space used: 74813674407912
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.27
Homology vs Protein
Query= Contig-U16238-1 (Contig-U16238-1Q) /CSM_Contig/Contig-U16238-1Q.Seq.d
(800 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115598_20(AC115598|pid:none) Dictyostelium discoideum chromoso... 209 1e-52
CP000849_634(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 37 0.98
CT025776_6(CT025776|pid:none) Zebrafish DNA sequence from clone ... 37 0.98
BC093203_1(BC093203|pid:none) Danio rerio zgc:112101, mRNA (cDNA... 37 0.98
CP000087_603(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 36 1.3
BC067571_1(BC067571|pid:none) Danio rerio zgc:85676, mRNA (cDNA ... 36 1.7
CP000439_1008(CP000439|pid:none) Francisella tularensis subsp. n... 35 2.9
CP000608_876(CP000608|pid:none) Francisella tularensis subsp. tu... 35 2.9
AJ749949_651(AJ749949|pid:none) Francisella tularensis subsp. tu... 35 2.9
AM233362_924(AM233362|pid:none) Francisella tularensis subsp. ho... 35 2.9
CP000560_3247(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 34 4.9

>AC115598_20(AC115598|pid:none) Dictyostelium discoideum chromosome
2 map 581427-735498 strain AX4, complete sequence.
Length = 163

Score = 209 bits (531), Expect = 1e-52
Identities = 107/151 (70%), Positives = 111/151 (73%)
Frame = +3

Query: 123 LERPLFGERKKQTXXXXXXXXXXXXXXXXXXXXXGVYFGIKVNARHFVLVGTIIVIFGSL 302
++ PLFGERKKQ GVYFGIKVNARHFVLVGTIIVIFGSL
Sbjct: 1 MDEPLFGERKKQ-----------------FSIAIGVYFGIKVNARHFVLVGTIIVIFGSL 43

Query: 303 ALLVKWWRDQDDRIHPKFKYLIFLLAGCVILASISLNCYVWVPKALTCNGLYTFENKTCI 482
ALLVKWWRDQDDRIHPKFKYLIFLLAGCVILASISLNCYVWVPKALTCNGLYTFENKTCI
Sbjct: 44 ALLVKWWRDQDDRIHPKFKYLIFLLAGCVILASISLNCYVWVPKALTCNGLYTFENKTCI 103

Query: 483 SVQDPSSCSMWFNL*SSSIGRSIVQNTGPPP 575
SVQDPSSCS + + PPP
Sbjct: 104 SVQDPSSCSCGLTYDPVQLKVYCTEYCPPPP 134

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,049,169,175
Number of extensions: 20693951
Number of successful extensions: 53574
Number of sequences better than 10.0: 11
Number of HSP's gapped: 53531
Number of HSP's successfully gapped: 11
Length of query: 266
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 140
Effective length of database: 649,361,233
Effective search space: 90910572620
Effective search space used: 90910572620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.54 gvh: 0.61 alm: 0.16 top: 0.53 tms: 0.20 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
24.0 %: plasma membrane
16.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: nuclear
4.0 %: peroxisomal
4.0 %: vacuolar

>> prediction for Contig-U16238-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0