Contig-U16238-1 |
Contig ID |
Contig-U16238-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
800 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
5836163 |
End point |
5835362 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
3 |
Number of EST |
3 |
Link to clone list |
U16238 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 3.22 |
Homology vs DNA |
Query= Contig-U16238-1 (Contig-U16238-1Q) /CSM_Contig/Contig-U16238-1Q.Seq.d (800 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU051933) Dictyostelium discoideum slug cDNA, clone SSC426. 920 0.0 2 (AU284918) Dictyostelium discoideum gamete cDNA clone:FC-BP2... 668 0.0 6 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 470 0.0 9 (C92472) Dictyostelium discoideum slug cDNA, clone SSE614. 573 e-180 5 (CP000020) Vibrio fischeri ES114 chromosome I, complete sequ... 52 0.032 1 (CR382138) Debaryomyces hansenii strain CBS767 chromosome F ... 50 0.13 1 (BX323860) Human DNA sequence from clone RP11-552D4 on chrom... 48 0.51 1 (AU071742) Dictyostelium discoideum slug cDNA, clone SSC426. 32 0.69 3 (AL592430) Human DNA sequence from clone RP11-388P9 on chrom... 38 0.71 3 (EK022748) 1092955342268 Global-Ocean-Sampling_GS-31-01-01-1... 32 1.4 2 (EK023990) 1092955350886 Global-Ocean-Sampling_GS-31-01-01-1... 32 1.4 2 (AL845542) Mouse DNA sequence from clone RP23-288I12 on chro... 46 2.0 1 (AC114823) Mus musculus BAC clone RP23-209L10 from 2, comple... 46 2.0 1 (AM438526) Vitis vinifera contig VV78X224268.7, whole genome... 46 2.0 1 (AC158028) Bos taurus clone CH240-138A18, *** SEQUENCING IN ... 46 2.0 1 (AC156876) Bos taurus clone CH240-63M11, WORKING DRAFT SEQUE... 46 2.0 1 (AC134340) Mus musculus chromosome UNK clone RP23-70F20, WOR... 46 2.0 1 (AC094741) Rattus norvegicus clone CH230-5C12, *** SEQUENCIN... 46 2.0 1 (CU326338) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1 (AC180235) Strongylocentrotus purpuratus clone R3-36L07, WOR... 46 2.0 1 (AC165773) Bos taurus clone CH240-160E11, WORKING DRAFT SEQU... 46 2.0 1 (BH374659) AG-ND-119O20.TF ND-TAM Anopheles gambiae genomic ... 46 2.0 1 (AZ979182) 2M0255I14R Mouse 10kb plasmid UUGC2M library Mus ... 46 2.0 1 (AZ954756) 2M0220N05R Mouse 10kb plasmid UUGC2M library Mus ... 46 2.0 1 (ER972231) AF__Bc0058E08r AF__Bc Aquilegia formosa genomic, ... 46 2.0 1 (ER742185) SB_BBc146-N18.R SB_BBc Sorghum bicolor genomic 3'... 46 2.0 1 (ER723321) SB_BBc284-J14.R SB_BBc Sorghum bicolor genomic 3'... 46 2.0 1 (EI990962) SB_BBc88-C15.F SB_BBc Sorghum bicolor genomic 5',... 46 2.0 1 (EI968810) SB_BBc64-H07.F SB_BBc Sorghum bicolor genomic 5',... 46 2.0 1 (CW429743) fsbb001f143c11f0 Sorghum methylation filtered lib... 46 2.0 1 (CW083952) 104_426_10945483_114_32376_074 Sorghum methylatio... 46 2.0 1 (CW062348) 104_307_10521289_1_30043 Sorghum methylation filt... 46 2.0 1 (DT769112) EST1202962 Aquilegia cDNA library Aquilegia formo... 46 2.0 1 (DT765721) EST1199570 Aquilegia cDNA library Aquilegia formo... 46 2.0 1 (DT760409) EST1194258 Aquilegia cDNA library Aquilegia formo... 46 2.0 1 (DT753653) EST1187502 Aquilegia cDNA library Aquilegia formo... 46 2.0 1 (DR922919) EST1114458 Aquilegia cDNA library Aquilegia formo... 46 2.0 1 (DR920340) EST1111879 Aquilegia cDNA library Aquilegia formo... 46 2.0 1 (DR915035) EST1106574 Aquilegia cDNA library Aquilegia formo... 46 2.0 1 (AC193976) Zea mays chromosome unknown clone ZMMBBb-127H1; Z... 38 2.7 2 (BX537139) Zebrafish DNA sequence from clone DKEY-46K9 in li... 36 3.4 4 (AC202161) Zea mays chromosome 1 clone CH201-397L6; ZMMBBc03... 38 3.6 5 (AC205471) Zea mays chromosome 8 clone CH201-479F12; ZMMBBc0... 38 4.0 2 (CN626330) tae97e02.x1 Hydra EST Darmstadt I Hydra magnipapi... 32 5.2 2 (AC176343) Strongylocentrotus purpuratus clone R3-3054A19, W... 40 5.3 4 (EU795214) Uncultured bacterium HF0130_05G09 genomic sequence. 42 5.3 4 (CN622950) tad97f04.x1 Hydra EST Darmstadt I Hydra magnipapi... 32 5.3 2 (AC126043) Mus musculus BAC clone RP24-356N5 from chromosome... 44 7.9 1 (AC123682) Mus musculus chromosome 15, clone RP23-288J22, co... 44 7.9 1 (AC122538) Mus musculus BAC clone RP24-548J11 from 16, compl... 44 7.9 1 (AF138704) Pisum sativum gibberellin c20-oxidase gene, compl... 44 7.9 1 (AX346603) Sequence 1674 from Patent WO0200928. 44 7.9 1 (AC161301) Atelerix albiventris clone LB4-69D14, WORKING DRA... 44 7.9 1 (AC157643) Rhinolophus ferrumequinum clone VMRC7-218M22, WOR... 44 7.9 1 (AC153408) Bos taurus clone CH240-21E8, WORKING DRAFT SEQUEN... 44 7.9 1 (AC131879) Rattus norvegicus clone CH230-86I14, *** SEQUENCI... 44 7.9 1 (AC098034) Rattus norvegicus clone CH230-194A3, *** SEQUENCI... 44 7.9 1 (AC095295) Rattus norvegicus clone CH230-12A9, *** SEQUENCIN... 44 7.9 1 (AL844507) Plasmodium falciparum chromosome 8. 44 7.9 1 (AC231006) Bos taurus clone CH240-493M15, WORKING DRAFT SEQU... 44 7.9 1 (AC201300) Strongylocentrotus purpuratus clone R3-16I10, WOR... 44 7.9 1 (AZ007515) RPCI-23-322P10.TV RPCI-23 Mus musculus genomic cl... 44 7.9 1 (EK111915) 1092963120687 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.9 1 (EJ237540) 1095313004193 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.9 1 (CW430561) fsbb001f144e23f0 Sorghum methylation filtered lib... 44 7.9 1 (EE590064) AFS-PLATE03_G03 Adult female Anopheles funestus s... 44 7.9 1 (EB724121) PMAO-aab82b01.g1 Lamprey_EST_Embryo Petromyzon ma... 44 7.9 1 (DB795359) Sus scrofa mRNA, clone:DCI010065D10, 5' end, expr... 44 7.9 1 (AI506987) vl55a05.x1 Stratagene mouse skin (#937313) Mus mu... 44 7.9 1 (FE788190) CCAG15966.g1 CCAG Petrolisthes cinctipes heart, g... 44 7.9 1 (EY764559) CR05-C1-100-046-G02-CT.F Mandarin leaf, greenhous... 44 7.9 1 (EY762810) CR05-C1-100-058-H12-CT.F Mandarin leaf, greenhous... 44 7.9 1 (EV479053) Fc_nor_77H05_M13F Folsomia candida normalized cDN... 44 7.9 1 (CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 44 7.9 1 (AC203052) Zea mays chromosome 4 clone CH201-346B18; ZMMBBc0... 38 8.3 3
>(AU051933) Dictyostelium discoideum slug cDNA, clone SSC426. Length = 770
Score = 920 bits (464), Expect(2) = 0.0 Identities = 464/464 (100%) Strand = Plus / Minus
Query: 131 accattatttggagagagaaagaaacaaacacaaatttctcaaattattatttctataat 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 accattatttggagagagaaagaaacaaacacaaatttctcaaattattatttctataat 532
Query: 191 tgttgcagctttttcattgttctcaatagcaattggtgtatattttggaattaaagtaaa 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 tgttgcagctttttcattgttctcaatagcaattggtgtatattttggaattaaagtaaa 472
Query: 251 tgcaagacattttgtattagttggtactattattgttatatttggatcattagccttatt 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 tgcaagacattttgtattagttggtactattattgttatatttggatcattagccttatt 412
Query: 311 agttaaatggtggagagatcaagatgatagaattcatccaaaattcaaataccttatctt 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 agttaaatggtggagagatcaagatgatagaattcatccaaaattcaaataccttatctt 352
Query: 371 ccttttagctggttgtgtaattttagcttcaatttcactcaattgttatgtttgggtacc 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 ccttttagctggttgtgtaattttagcttcaatttcactcaattgttatgtttgggtacc 292
Query: 431 aaaagcactcacttgtaatggtttatatacatttgaaaataaaacatgtatatctgttca 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 aaaagcactcacttgtaatggtttatatacatttgaaaataaaacatgtatatctgttca 232
Query: 491 agatccatcttcatgttccatgtggtttaacttatgatccagttcaattggaaggtctat 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 agatccatcttcatgttccatgtggtttaacttatgatccagttcaattggaaggtctat 172
Query: 551 tgtacagaatactggtccaccaccacccagattctgggtagtaa 594 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 tgtacagaatactggtccaccaccacccagattctgggtagtaa 128
Score = 129 bits (65), Expect(2) = 0.0 Identities = 65/65 (100%) Strand = Plus / Minus
Query: 593 aataaattcccatccatcttctgggtaaaaagcttgatggaattcggatcctggaatacc 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 aataaattcccatccatcttctgggtaaaaagcttgatggaattcggatcctggaatacc 69
Query: 653 gatat 657 ||||| Sbjct: 68 gatat 64
Score = 63.9 bits (32), Expect = 9e-06 Identities = 35/35 (100%) Strand = Plus / Minus
Query: 97 gtaaatnaaaatggatgaaccattatttggagaga 131 ||||||||||||||||||||||||||||||||||| Sbjct: 609 gtaaatnaaaatggatgaaccattatttggagaga 575
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 758,860,060 Number of extensions: 49791377 Number of successful extensions: 4339874 Number of sequences better than 10.0: 75 Length of query: 800 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 776 Effective length of database: 96,409,374,237 Effective search space: 74813674407912 Effective search space used: 74813674407912 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.27 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |