Contig-U16231-1
Contig ID Contig-U16231-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16231-1 (Contig-U16231-1Q) /CSM_Contig/Contig-U16231-1Q.Seq.d
AGTGTACTCTCAAAATTTCAACATGGCCGAAAAAACTAAAGCTTTTGAAC
TCAGAACCAAAAACAAGACTCAATTACTTGAACACCTCAAGGAACTCAGA
ACTGAGCTCTCAAGTTTAAGAGTTGCCCAAGTTAAATCACCAAACCCAAG
CAAATTAGCCAAAATCGGTACCGTCCGTAAAGCTATTGCCCGTGTTTTAA
CTGTTTTCAACCAAACTCAAAAGAACCATCTCCGTGCTGTCTATTCTAAA
AAATCATCAAGCAAGATCCCAACTGATCTCCGTTACAAAAAGACTAGAGC
CATCAGAAGACGTCTCACCAACAAACAATCTAAAGTTGTCACCTTAAGAG
TTTCCAAAACTGCCACCAACTTCCCACAAAGAGTTTTCGCTGTTAAAGCC
TAAATTTGCATTTAGATGATTTTAAAAAATAAAATATATTAAAAAAAAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---
-------CCNAAATCGGGTCCGNCCGNAAANGTATTGNCCGTGTTTTNAC
TGNTTTNAACCNAACTCAAAANAACCATTTCCGNGCTGNNTATTTTAAAA
AATNNTCNAGCAANANNCCNACTGATTNCCGNTNCAAAAANA

Gap gap included
Contig length 632
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1411323
End point 1410827
Strand (PLUS/MINUS) MINUS
Number of clones 34
Number of EST 48
Link to clone list U16231
List of clone(s)

est1=VHM879F,1,450
est2=VHM879Z,1,401
est3=VSG811F,9,465
est4=VSA850E,11,451
est5=VSC307E,11,447
est6=VSJ543F,11,480
est7=VSD254F,13,465
est8=VSD254Z,13,422
est9=VSK218F,15,465
est10=VSD260F,19,456
est11=VSF445Z,22,434
est12=VSG886F,22,438
est13=VSI788F,22,456
est14=VSI795Z,22,444
est15=VSJ336F,22,465
est16=VSJ336Z,22,433
est17=VSD260Z,23,442
est18=VSD708F,23,456
est19=VSD708Z,23,442
est20=VSI395F,23,465
est21=VSI395Z,23,435
est22=VSK218Z,23,435
est23=VSC838E,25,471
est24=VSH858F,26,456
est25=VSA330E,28,497
est26=VSC312E,28,473
est27=VSC664E,28,473
est28=VSC875E,28,448
est29=FC-AO11E,29,461
est30=VSD292F,29,465
est31=VSD292Z,29,452
est32=VSK431Z,29,443
est33=VSG139F,30,456
est34=VSI869E,30,453
est35=VSJ636F,30,465
est36=VSJ636Z,30,453
est37=VSE856E,31,456
est38=FC-BP16E,39,476
est39=VSB406Z,63,446
est40=VSF445F,65,378
est41=VSI795F,69,367
est42=VSA586Z,74,477
est43=VSA387Z,83,497
est44=VSA883Z,88,473
est45=VSH858Z,179,432
est46=VSG139Z,183,412
est47=VSI676Z,191,328
est48=VSJ543Z,498,632
Translated Amino Acid sequence
ctlkistwpkklkllnsepktrlnylntsrnselssqv*elpklnhqtqan*pksvpsvk
llpvf*lfstklkrtisvlsilknhqarsqlisvtkrlepsedvsptnnlklsp*efpkl
pptshkefsllkpkfafr*f*KIKYIKKKKKKKKKKKKKKKKKKK---

---PKSGPXXXVLXVFXLXXTXLKXTISXLXILKNXXAXXXLIXXXKX


Translated Amino Acid sequence (All Frames)
Frame A:
svlskfqhgrkn*sf*tqnqkqdsit*tpqgtqn*alkfkscps*itkpkqisqnryrp*
sycpcfncfqpnskepspcclf*kiikqdpn*splqkd*shqktshqqti*schlksfqn
chqlptksfrc*slnlhlddfkk*nilkkrkkkkkkkkkkkkkkk---

---PKSGPXXXVLXVFXLXXTXLKXTISXLXILKNXXAXXXLIXXXKX

Frame B:
vysqnfnmaektkafelrtknktqllehlkelrtelsslrvaqvkspnpsklakigtvrk
aiarvltvfnqtqknhlravyskkssskiptdlrykktrairrrltnkqskvvtlrvskt
atnfpqrvfavka*ici*milknkiy*kkekkkkkkkkkkkkkkk---

---xnrvrpxxyxpcfxxfxpnskxpfpxxxf*kxxxqxxx*xpxqk

Frame C:
ctlkistwpkklkllnsepktrlnylntsrnselssqv*elpklnhqtqan*pksvpsvk
llpvf*lfstklkrtisvlsilknhqarsqlisvtkrlepsedvsptnnlklsp*efpkl
pptshkefsllkpkfafr*f*KIKYIKKKKKKKKKKKKKKKKKKK---

---xigsxrkxixrvxtxxnxtqxnhfraxyfkkxssxxptdxrxkx

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16231-1 (Contig-U16231-1Q)
/CSM_Contig/Contig-U16231-1Q.Seq.d
(642 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16231-1 (Contig-U16231-1Q) /CSM_Contig/Conti... 837 0.0
Contig-U11808-1 (Contig-U11808-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U08336-1 (Contig-U08336-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U06849-1 (Contig-U06849-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U06480-1 (Contig-U06480-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U15415-1 (Contig-U15415-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U15119-1 (Contig-U15119-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U12691-1 (Contig-U12691-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U12505-1 (Contig-U12505-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U12445-1 (Contig-U12445-1Q) /CSM_Contig/Conti... 32 1.0

>Contig-U16231-1 (Contig-U16231-1Q) /CSM_Contig/Contig-U16231-1Q.Seq.d
Length = 642

Score = 837 bits (422), Expect = 0.0
Identities = 422/422 (100%)
Strand = Plus / Plus


Query: 1 agtgtactctcaaaatttcaacatggccgaaaaaactaaagcttttgaactcagaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgtactctcaaaatttcaacatggccgaaaaaactaaagcttttgaactcagaaccaa 60


Query: 61 aaacaagactcaattacttgaacacctcaaggaactcagaactgagctctcaagtttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacaagactcaattacttgaacacctcaaggaactcagaactgagctctcaagtttaag 120


Query: 121 agttgcccaagttaaatcaccaaacccaagcaaattagccaaaatcggtaccgtccgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttgcccaagttaaatcaccaaacccaagcaaattagccaaaatcggtaccgtccgtaa 180


Query: 181 agctattgcccgtgttttaactgttttcaaccaaactcaaaagaaccatctccgtgctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agctattgcccgtgttttaactgttttcaaccaaactcaaaagaaccatctccgtgctgt 240


Query: 241 ctattctaaaaaatcatcaagcaagatcccaactgatctccgttacaaaaagactagagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctattctaaaaaatcatcaagcaagatcccaactgatctccgttacaaaaagactagagc 300


Query: 301 catcagaagacgtctcaccaacaaacaatctaaagttgtcaccttaagagtttccaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catcagaagacgtctcaccaacaaacaatctaaagttgtcaccttaagagtttccaaaac 360


Query: 361 tgccaccaacttcccacaaagagttttcgctgttaaagcctaaatttgcatttagatgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgccaccaacttcccacaaagagttttcgctgttaaagcctaaatttgcatttagatgat 420


Query: 421 tt 422
||
Sbjct: 421 tt 422


Score = 91.7 bits (46), Expect = 1e-18
Identities = 124/130 (95%)
Strand = Plus / Plus


Query: 511 aaatcgggtccgnccgnaaangtattgnccgtgttttnactgntttnaaccnaactcnnn 570
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaatcgggtccgnccgnaaangtattgnccgtgttttnactgntttnaaccnaactcaaa 570


Query: 571 nnnnccatttccgngctgnntattttaaaaaatnntcnagcaanannccnactgattncc 630
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 anaaccatttccgngctgnntattttaaaaaatnntcnagcaanannccnactgattncc 630


Query: 631 gntncaaaaa 640
||||||||||
Sbjct: 631 gntncaaaaa 640


Score = 79.8 bits (40), Expect = 5e-15
Identities = 102/130 (78%)
Strand = Plus / Plus


Query: 162 aaatcggtaccgtccgtaaagctattgcccgtgttttaactgttttcaaccaaactcaaa 221
||||||| ||| ||| ||| ||||| ||||||||| |||| ||| |||| ||||||||
Sbjct: 511 aaatcgggtccgnccgnaaangtattgnccgtgttttnactgntttnaaccnaactcaaa 570


Query: 222 agaaccatctccgtgctgtctattctaaaaaatcatcaagcaagatcccaactgatctcc 281
| |||||| |||| |||| |||| |||||||| || ||||| | || |||||| ||
Sbjct: 571 anaaccatttccgngctgnntattttaaaaaatnntcnagcaanannccnactgattncc 630


Query: 282 gttacaaaaa 291
| | ||||||
Sbjct: 631 gntncaaaaa 640


>Contig-U11808-1 (Contig-U11808-1Q) /CSM_Contig/Contig-U11808-1Q.Seq.d
Length = 1209

Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 243 attctaaaaaatcatca 259
|||||||||||||||||
Sbjct: 1135 attctaaaaaatcatca 1151


>Contig-U08336-1 (Contig-U08336-1Q) /CSM_Contig/Contig-U08336-1Q.Seq.d
Length = 469

Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 27 ccgaaaaaactaaagct 43
|||||||||||||||||
Sbjct: 451 ccgaaaaaactaaagct 435


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5242
Number of Sequences: 8402
Number of extensions: 5242
Number of successful extensions: 318
Number of sequences better than 10.0: 29
length of query: 642
length of database: 8,075,542
effective HSP length: 16
effective length of query: 626
effective length of database: 7,941,110
effective search space: 4971134860
effective search space used: 4971134860
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.22
Homology vs DNA
Query= Contig-U16231-1 (Contig-U16231-1Q) /CSM_Contig/Contig-U16231-1Q.Seq.d
(642 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ425816) Dictyostelium discoideum cDNA clone:ddv56n20, 5' ... 839 0.0 1
(AU266830) Dictyostelium discoideum vegetative cDNA clone:VS... 823 0.0 1
(AU270086) Dictyostelium discoideum vegetative cDNA clone:VS... 819 0.0 1
(AU262465) Dictyostelium discoideum vegetative cDNA clone:VS... 819 0.0 1
(AU261785) Dictyostelium discoideum vegetative cDNA clone:VS... 819 0.0 1
(AU263721) Dictyostelium discoideum vegetative cDNA clone:VS... 815 0.0 1
(AU269772) Dictyostelium discoideum vegetative cDNA clone:VS... 797 0.0 1
(AU266900) Dictyostelium discoideum vegetative cDNA clone:VS... 797 0.0 1
(AU268631) Dictyostelium discoideum vegetative cDNA clone:VS... 795 0.0 1
(AU264437) Dictyostelium discoideum vegetative cDNA clone:VS... 795 0.0 1
(AU263733) Dictyostelium discoideum vegetative cDNA clone:VS... 795 0.0 1
(AU268081) Dictyostelium discoideum vegetative cDNA clone:VS... 789 0.0 1
(AU263791) Dictyostelium discoideum vegetative cDNA clone:VS... 783 0.0 1
(C23858) Dictyostelium discoideum gamete cDNA, clone FC-AO11. 783 0.0 1
(AU269244) Dictyostelium discoideum vegetative cDNA clone:VS... 781 0.0 1
(AU266025) Dictyostelium discoideum vegetative cDNA clone:VS... 781 0.0 1
(AU263722) Dictyostelium discoideum vegetative cDNA clone:VS... 781 0.0 1
(AU269232) Dictyostelium discoideum vegetative cDNA clone:VS... 779 0.0 1
(AU264438) Dictyostelium discoideum vegetative cDNA clone:VS... 779 0.0 1
(AU263734) Dictyostelium discoideum vegetative cDNA clone:VS... 779 0.0 1
(AU263432) Dictyostelium discoideum vegetative cDNA clone:VS... 779 0.0 1
(BJ444613) Dictyostelium discoideum cDNA clone:ddv56n20, 3' ... 779 0.0 1
(AU262854) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU261428) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU265243) Dictyostelium discoideum vegetative cDNA clone:VS... 775 0.0 1
(AU262828) Dictyostelium discoideum vegetative cDNA clone:VS... 775 0.0 1
(AU270824) Dictyostelium discoideum vegetative cDNA clone:VS... 529 0.0 2
(AU271184) Dictyostelium discoideum vegetative cDNA clone:VS... 769 0.0 1
(AU262468) Dictyostelium discoideum vegetative cDNA clone:VS... 769 0.0 1
(AU270235) Dictyostelium discoideum vegetative cDNA clone:VS... 767 0.0 1
(AU269370) Dictyostelium discoideum vegetative cDNA clone:VS... 767 0.0 1
(AU268632) Dictyostelium discoideum vegetative cDNA clone:VS... 767 0.0 1
(AU269773) Dictyostelium discoideum vegetative cDNA clone:VS... 763 0.0 1
(AU269369) Dictyostelium discoideum vegetative cDNA clone:VS... 761 0.0 1
(AU262710) Dictyostelium discoideum vegetative cDNA clone:VS... 755 0.0 1
(AU270234) Dictyostelium discoideum vegetative cDNA clone:VS... 751 0.0 1
(AU263792) Dictyostelium discoideum vegetative cDNA clone:VS... 733 0.0 2
(AU270825) Dictyostelium discoideum vegetative cDNA clone:VS... 529 0.0 2
(AU284913) Dictyostelium discoideum gamete cDNA clone:FC-BP1... 739 0.0 1
(AU262000) Dictyostelium discoideum vegetative cDNA clone:VS... 706 0.0 1
(AU261459) Dictyostelium discoideum vegetative cDNA clone:VS... 672 0.0 1
(AU261808) Dictyostelium discoideum vegetative cDNA clone:VS... 668 0.0 1
(AU261587) Dictyostelium discoideum vegetative cDNA clone:VS... 638 e-179 1
(AU265242) Dictyostelium discoideum vegetative cDNA clone:VS... 615 e-172 1
(AU268082) Dictyostelium discoideum vegetative cDNA clone:VS... 468 e-127 1
(AU269243) Dictyostelium discoideum vegetative cDNA clone:VS... 329 e-124 5
(AU266026) Dictyostelium discoideum vegetative cDNA clone:VS... 428 e-115 1
(AU269070) Dictyostelium discoideum vegetative cDNA clone:VS... 252 1e-62 1
(AU271183) Dictyostelium discoideum vegetative cDNA clone:VS... 117 2e-33 2
(AU270087) Dictyostelium discoideum vegetative cDNA clone:VS... 127 5e-25 1
(EC761573) PSE00008300 rw_mgpallid Polysphondylium pallidum ... 52 2e-08 2
(BW596198) Lotus japonicus cDNA, clone: LjCa-007-AB01, 5' en... 50 0.10 1
(AL132954) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 46 0.34 2
(AC154755) Mus musculus BAC clone RP24-406B22 from chromosom... 46 1.6 1
(BT006384) Arabidopsis thaliana At3g55170 gene, complete cds. 46 1.6 1
(AK227739) Arabidopsis thaliana mRNA for ribosomal protein L... 46 1.6 1
(FP016117) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(CU914347) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(CU469261) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(BX825870) Arabidopsis thaliana Full-length cDNA Complete se... 46 1.6 1
(BX825341) Arabidopsis thaliana Full-length cDNA Complete se... 46 1.6 1
(AL084068) Arabidopsis thaliana genome survey sequence T7 en... 46 1.6 1
(AJ600798) Arabidopsis thaliana T-DNA flanking sequence, rig... 46 1.6 1
(ES068337) 098612_2255_1450 Arabidopsis ovule high throughpu... 46 1.6 1
(EL252149) EB3RODY02JTULK 8-day Arabidopsis seedlings, aeria... 46 1.6 1
(EL233958) EB3RODY02H83O3 8-day Arabidopsis seedlings, aeria... 46 1.6 1
(DR376920) 992391 CERES-129 Arabidopsis thaliana cDNA clone ... 46 1.6 1
(DR260709) 112859 CERES-147 Arabidopsis thaliana cDNA clone ... 46 1.6 1
(DR260708) 53353 CERES-149 Arabidopsis thaliana cDNA clone 1... 46 1.6 1
(DR260707) 154957 CERES-149 Arabidopsis thaliana cDNA clone ... 46 1.6 1
(DR260706) 135324 CERES-149 Arabidopsis thaliana cDNA clone ... 46 1.6 1
(DR260705) 1147583 CERES-147 Arabidopsis thaliana cDNA clone... 46 1.6 1
(DR260704) 4494767 CERES-149 Arabidopsis thaliana cDNA clone... 46 1.6 1
(DR260703) 134909 CERES-149 Arabidopsis thaliana cDNA clone ... 46 1.6 1
(DR260702) 41900 CERES-147 Arabidopsis thaliana cDNA clone 7... 46 1.6 1
(DR260701) 44628 CERES-149 Arabidopsis thaliana cDNA clone 9... 46 1.6 1
(DR260700) 33514 CERES-129 Arabidopsis thaliana cDNA clone 4... 46 1.6 1
(DR260699) 47454 CERES-147 Arabidopsis thaliana cDNA clone 1... 46 1.6 1
(DR260698) 6911735 CERES-AS12 Arabidopsis thaliana cDNA clon... 46 1.6 1
(DR260697) 1103495 CERES-147 Arabidopsis thaliana cDNA clone... 46 1.6 1
(DR260696) 3727289 CERES-AU1 Arabidopsis thaliana cDNA clone... 46 1.6 1
(DR260695) 1142746 CERES-147 Arabidopsis thaliana cDNA clone... 46 1.6 1
(DR260694) 43469 CERES-149 Arabidopsis thaliana cDNA clone 8... 46 1.6 1
(DR260693) 59879 CERES-147 Arabidopsis thaliana cDNA clone 2... 46 1.6 1
(AU226410) Arabidopsis thaliana cDNA clone:RAFL14-31-M09, 3'... 46 1.6 1
(AJ627174) Arabidopsis halleri subsp. halleri EST, clone TDF... 46 1.6 1
(AI996565) 701667462 A. thaliana, Columbia Col-0, root-1 Ara... 46 1.6 1
(CB264903) 24-E015021-035-004-O05-T7R MPIZ-ADIS-035 Arabidop... 46 1.6 1
(BP820029) Arabidopsis thaliana cDNA clone:RAFL22-53-D17, 5'... 46 1.6 1
(BP809385) Arabidopsis thaliana cDNA clone:RAFL24-21-G03, 5'... 46 1.6 1
(BP800565) Arabidopsis thaliana cDNA clone:RAFL23-15-P06, 5'... 46 1.6 1
(BP798143) Arabidopsis thaliana cDNA clone:RAFL23-06-C14, 5'... 46 1.6 1
(BP652493) Arabidopsis thaliana cDNA clone:RAFL19-93-F04, 3'... 46 1.6 1
(BP577613) Arabidopsis thaliana cDNA clone:RAFL14-97-G19, 3'... 46 1.6 1
(BP573267) Arabidopsis thaliana cDNA clone:RAFL14-83-J22, 3'... 46 1.6 1
(BP570403) Arabidopsis thaliana cDNA clone:RAFL14-72-H10, 3'... 46 1.6 1
(BP566020) Arabidopsis thaliana cDNA clone:RAFL14-52-D12, 3'... 46 1.6 1
(BE038964) AB07H02 AB Arabidopsis thaliana cDNA 5' similar t... 46 1.6 1
(Z47610) A. thaliana transcribed sequence; clone TAI212; 5' ... 46 1.6 1
(GD031558) CCHZ16025.b1 CCHZ Panicum virgatum abiotic and bi... 46 1.6 1
(GD029877) CCHZ14981.b1 CCHZ Panicum virgatum abiotic and bi... 46 1.6 1
(FL862411) CCGI7380.b1 CCGI Panicum virgatum etiolated seedl... 46 1.6 1
(FL710156) CCGA13042.b1 CCGA Panicum virgatum apex + stem (H... 46 1.6 1
(EJ979415) 1093022143481 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.3 1
(CL504522) SAIL_739_B08.v1 SAIL Collection Arabidopsis thali... 44 6.3 1
(BP585867) Arabidopsis thaliana cDNA clone:RAFL15-04-D07, 3'... 44 6.3 1

>(BJ425816) Dictyostelium discoideum cDNA clone:ddv56n20, 5' end,
single read.
Length = 450

Score = 839 bits (423), Expect = 0.0
Identities = 423/423 (100%)
Strand = Plus / Plus


Query: 1 agtgtactctcaaaatttcaacatggccgaaaaaactaaagcttttgaactcagaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgtactctcaaaatttcaacatggccgaaaaaactaaagcttttgaactcagaaccaa 60


Query: 61 aaacaagactcaattacttgaacacctcaaggaactcagaactgagctctcaagtttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacaagactcaattacttgaacacctcaaggaactcagaactgagctctcaagtttaag 120


Query: 121 agttgcccaagttaaatcaccaaacccaagcaaattagccaaaatcggtaccgtccgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttgcccaagttaaatcaccaaacccaagcaaattagccaaaatcggtaccgtccgtaa 180


Query: 181 agctattgcccgtgttttaactgttttcaaccaaactcaaaagaaccatctccgtgctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agctattgcccgtgttttaactgttttcaaccaaactcaaaagaaccatctccgtgctgt 240


Query: 241 ctattctaaaaaatcatcaagcaagatcccaactgatctccgttacaaaaagactagagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctattctaaaaaatcatcaagcaagatcccaactgatctccgttacaaaaagactagagc 300


Query: 301 catcagaagacgtctcaccaacaaacaatctaaagttgtcaccttaagagtttccaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catcagaagacgtctcaccaacaaacaatctaaagttgtcaccttaagagtttccaaaac 360


Query: 361 tgccaccaacttcccacaaagagttttcgctgttaaagcctaaatttgcatttagatgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgccaccaacttcccacaaagagttttcgctgttaaagcctaaatttgcatttagatgat 420


Query: 421 ttt 423
|||
Sbjct: 421 ttt 423

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 522,977,328
Number of extensions: 31120112
Number of successful extensions: 2062238
Number of sequences better than 10.0: 106
Length of query: 642
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 618
Effective length of database: 96,409,374,237
Effective search space: 59580993278466
Effective search space used: 59580993278466
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.27
Homology vs Protein
Query= Contig-U16231-1 (Contig-U16231-1Q) /CSM_Contig/Contig-U16231-1Q.Seq.d
(642 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE017341_741(AE017341|pid:none) Cryptococcus neoformans var. neo... 128 1e-28
AF548325_1(AF548325|pid:none) Branchiostoma belcheri ribosomal p... 115 1e-24
EU958029_1(EU958029|pid:none) Zea mays clone 1664319 60S ribosom... 113 4e-24
AK059262_1(AK059262|pid:none) Oryza sativa Japonica Group cDNA c... 111 2e-23
BT053501_1(BT053501|pid:none) Medicago truncatula clone MTYFP_FQ... 110 3e-23
(P17078) RecName: Full=60S ribosomal protein L35; &(Q6ZWV7) Rec... 110 3e-23
AC149264_3(AC149264|pid:none) Medicago truncatula clone mth2-78f... 110 3e-23
EU959220_1(EU959220|pid:none) Zea mays clone 212376 60S ribosoma... 110 3e-23
(Q9M3D2) RecName: Full=60S ribosomal protein L35-3; &AK227739_1... 110 5e-23
(Q9LZ41) RecName: Full=60S ribosomal protein L35-4; &AK226248_1... 109 6e-23
FJ386430_1(FJ386430|pid:none) Pectinaria gouldii hypothetical pr... 109 6e-23
BT046731_1(BT046731|pid:none) Salmo salar clone ssal-evf-576-317... 109 8e-23
(Q29361) RecName: Full=60S ribosomal protein L35; &AB055884_1(A... 108 1e-22
DQ440066_1(DQ440066|pid:none) Aedes aegypti clone AE-335 60S rib... 108 1e-22
AY118364_1(AY118364|pid:none) Drosophila melanogaster RE09547 fu... 108 1e-22
AM049119_1(AM049119|pid:none) Timarcha balearica mRNA for riboso... 108 1e-22
DQ216683_1(DQ216683|pid:none) Taeniopygia guttata clone 0064P002... 108 1e-22
(Q9SF53) RecName: Full=60S ribosomal protein L35-1; &AC016661_7... 108 1e-22
AY769304_1(AY769304|pid:none) Bombyx mori ribosomal protein L35 ... 107 2e-22
AC148242_39(AC148242|pid:none) Medicago truncatula clone mth2-18... 107 2e-22
EF145594_1(EF145594|pid:none) Populus trichocarpa clone WS01126_... 107 2e-22
AE014298_799(AE014298|pid:none) Drosophila melanogaster chromoso... 107 2e-22
DQ235170_1(DQ235170|pid:none) Solanum tuberosum clone 155A10 unk... 107 2e-22
BT079064_1(BT079064|pid:none) Esox lucius clone eluc-evq-516-266... 107 3e-22
AY891400_1(AY891400|pid:none) Synthetic construct Homo sapiens c... 107 4e-22
(P42766) RecName: Full=60S ribosomal protein L35; &AK291072_1(A... 107 4e-22
(Q69CJ9) RecName: Full=60S ribosomal protein L35; &AY354199_1(A... 106 5e-22
BT073677_1(BT073677|pid:none) Oncorhynchus mykiss clone omyk-evo... 106 5e-22
(Q98TF7) RecName: Full=60S ribosomal protein L35; &AB046395_1(A... 106 5e-22
AF400196_1(AF400196|pid:none) Spodoptera frugiperda ribosomal pr... 106 5e-22
(Q9M5L0) RecName: Full=60S ribosomal protein L35; &AF227980_1(A... 106 5e-22
(O80626) RecName: Full=60S ribosomal protein L35-2; &AC004218_4... 106 5e-22
BT074078_1(BT074078|pid:none) Oncorhynchus mykiss clone omyk-evo... 106 7e-22
AM049117_1(AM049117|pid:none) Cicindela campestris mRNA for ribo... 106 7e-22
EF133864_1(EF133864|pid:none) Alexandrium fundyense strain GT-CA... 106 7e-22
EF179460_1(EF179460|pid:none) Xenopsylla cheopis clone XC-98 rib... 105 9e-22
BC010919_1(BC010919|pid:none) Homo sapiens ribosomal protein L35... 105 9e-22
CU928178_235(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 105 1e-21
CP001574_586(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 105 1e-21
EU139232_1(EU139232|pid:none) Flustra foliacea putative 60S ribo... 105 1e-21
CR382134_610(CR382134|pid:none) Debaryomyces hansenii strain CBS... 105 1e-21
(Q6PBC1) RecName: Full=60S ribosomal protein L35; &BC059774_1(B... 105 1e-21
AX716903_1(AX716903|pid:none) Sequence 14 from Patent WO03020757. 105 1e-21
AM049118_1(AM049118|pid:none) Georissus sp. APV-2005 mRNA for ri... 105 1e-21
DQ126007_1(DQ126007|pid:none) Rheum australe putative 60S riboso... 104 2e-21
AY961582_1(AY961582|pid:none) Lysiphlebus testaceipes ribosomal ... 104 2e-21
(Q4UIF8) RecName: Full=60S ribosomal protein L35; &CR940347_259... 104 3e-21
AB374973_1(AB374973|pid:none) Solea senegalensis RPL35 mRNA for ... 104 3e-21
BC099242_1(BC099242|pid:none) Xenopus laevis hypothetical protei... 103 3e-21
BT058256_1(BT058256|pid:none) Salmo salar clone Contig2889 60S r... 103 3e-21
BT073346_1(BT073346|pid:none) Oncorhynchus mykiss clone omyk-evn... 103 3e-21
EF634780_1(EF634780|pid:none) Pristionchus lheritieri large subu... 103 4e-21
FM992690_463(FM992690|pid:none) Candida dubliniensis CD36 chromo... 103 4e-21
EU558378_1(EU558378|pid:none) Phoronis muelleri putative 60S rib... 103 6e-21
CP000502_28(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso... 103 6e-21
AF416509_1(AF416509|pid:none) Paracoccidioides brasiliensis puta... 103 6e-21
EF070502_1(EF070502|pid:none) Maconellicoccus hirsutus clone WHM... 103 6e-21
EU247118_1(EU247118|pid:none) Lycosa singoriensis 60S ribosomal ... 103 6e-21
EF146601_1(EF146601|pid:none) Populus trichocarpa clone WS01210_... 103 6e-21
AE016817_495(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 103 6e-21
EF634786_1(EF634786|pid:none) Pristionchus sp. 6 RS5101 large su... 102 7e-21
(P52817) RecName: Full=60S ribosomal protein L35; &AY170919_2(A... 102 7e-21
(Q2VA69) RecName: Full=60S ribosomal protein L35; &DQ278174_1(D... 102 1e-20
DQ848925_1(DQ848925|pid:none) Scophthalmus maximus clone kac19 6... 102 1e-20
(Q6UZF7) RecName: Full=60S ribosomal protein L35; &AY357071_1(A... 102 1e-20
AC148171_13(AC148171|pid:none) Medicago truncatula clone mth2-30... 102 1e-20
EF634781_1(EF634781|pid:none) Pristionchus entomophagus large su... 101 2e-20
CR382126_228(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 101 2e-20
(Q4N756) RecName: Full=60S ribosomal protein L35; 101 2e-20
EF634782_1(EF634782|pid:none) Pristionchus uniformis large subun... 101 2e-20
EF634784_1(EF634784|pid:none) Pristionchus sp. 4 RS5050 large su... 101 2e-20
EF634793_1(EF634793|pid:none) Pristionchus sp. 13 RS5231 large s... 100 4e-20
EF634778_1(EF634778|pid:none) Pristionchus pacificus large subun... 100 4e-20
EF634791_1(EF634791|pid:none) Pristionchus sp. 11 RS5228 large s... 100 4e-20
BT075943_1(BT075943|pid:none) Caligus rogercresseyi clone crog-e... 100 5e-20
BT068192_1(BT068192|pid:none) Zea mays full-length cDNA clone ZM... 100 5e-20
EU302553_1(EU302553|pid:none) Lineus viridis ribosomal protein r... 100 5e-20
EF634792_1(EF634792|pid:none) Pristionchus americanus large subu... 100 6e-20
EU551644_1(EU551644|pid:none) Dermacentor variabilis isolate DvM... 100 6e-20
(Q5DVH6) RecName: Full=60S ribosomal protein L35; &AJ843090_1(A... 100 6e-20
EF634779_1(EF634779|pid:none) Pristionchus maupasi large subunit... 99 8e-20
(Q8L805) RecName: Full=60S ribosomal protein L35; &AY123419_1(A... 99 8e-20
AM270165_8(AM270165|pid:none) Aspergillus niger contig An08c0100... 99 1e-19
CU928180_91(CU928180|pid:none) Kluyveromyces thermotolerans stra... 99 1e-19
DQ864957_1(DQ864957|pid:none) Pfiesteria piscicida clone Ppi-115... 99 1e-19
AY674260_1(AY674260|pid:none) Ixodes pacificus clone IP_clu78 60... 98 2e-19
CP000585_147(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 98 2e-19
AK343158_1(AK343158|pid:none) Acyrthosiphon pisum ACYPI006417 mR... 97 3e-19
DQ066321_1(DQ066321|pid:none) Ixodes scapularis isolate IS-6-12L... 97 3e-19
EF634788_1(EF634788|pid:none) Pristionchus pauli large subunit r... 97 4e-19
EU930255_1(EU930255|pid:none) Simulium vittatum clone SV-271 60S... 96 7e-19
EF634787_1(EF634787|pid:none) Pristionchus marianneae large subu... 96 7e-19
FN321370_1(FN321370|pid:none) Schistosoma japonicum isolate Anhu... 96 1e-18
(P34662) RecName: Full=60S ribosomal protein L35; &L14429_5(L14... 94 4e-18
A48451(A48451) ribosomal protein L35.e, cytosolic - malaria para... 94 4e-18
EU979521_1(EU979521|pid:none) Ornithoctonus huwena clone HWEco6 ... 93 8e-18
EF634794_1(EF634794|pid:none) Pristionchus sp. 14 RS5230 large s... 92 1e-17
AF378561_1(AF378561|pid:none) Ophiostoma ulmi ribosomal protein ... 90 5e-17
AM910991_224(AM910991|pid:none) Plasmodium knowlesi strain H chr... 90 5e-17
AY533225_1(AY533225|pid:none) Chinchilla lanigera ribosomal prot... 87 4e-16
AM502244_232(AM502244|pid:none) Leishmania infantum chromosome 2... 83 8e-15
AE014186_241(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 80 4e-14
AX972854_1(AX972854|pid:none) Sequence 3657 from Patent EP1104808. 79 9e-14
AL354928_7(AL354928|pid:none) Human DNA sequence from clone RP11... 76 7e-13
FN392319_618(FN392319|pid:none) Pichia pastoris GS115 chromosome... 75 2e-12
BT050134_1(BT050134|pid:none) Salmo salar clone ssal-plnb-015-08... 71 3e-11
AF069312_1(AF069312|pid:none) Giardia intestinalis ribosomal pro... 67 4e-10
EU295455_1(EU295455|pid:none) Megaselia abdita ribosomal protein... 58 3e-07
AM998492_1(AM998492|pid:none) Leiopelma archeyi partial mRNA for... 56 8e-07
AP006616_21(AP006616|pid:none) Oryza sativa Japonica Group genom... 56 1e-06
EF081946_1(EF081946|pid:none) Picea sitchensis clone WS02714_B19... 51 3e-05
AY231641_1(AY231641|pid:none) Drosophila yakuba clone yak-em_CG4... 45 0.001
CP001251_928(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 45 0.001
CP001146_822(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 45 0.002
AE017332_194(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co... 44 0.004
DQ216681_1(DQ216681|pid:none) Taeniopygia guttata clone 0061P000... 44 0.005
BT062271_1(BT062271|pid:none) Zea mays full-length cDNA clone ZM... 42 0.012
AE017244_189(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, c... 42 0.015
CP001403_1395(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 42 0.020
BT087118_1(BT087118|pid:none) Zea mays full-length cDNA clone ZM... 42 0.020
(P54035) RecName: Full=50S ribosomal protein L29P; &F64357(F643... 41 0.026
CP001400_1288(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 41 0.026
AE017243_184(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp... 40 0.044
CP000742_707(CP000742|pid:none) Methanococcus vannielii SB, comp... 40 0.044
AB046409_1(AB046409|pid:none) Homo sapiens RPL35 gene for riboso... 40 0.044
CP001399_1375(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 40 0.044
(A9H3N9) RecName: Full=50S ribosomal protein L29; &AM889285_339... 40 0.058
CP001189_2902(CP001189|pid:none) Gluconacetobacter diazotrophicu... 40 0.058
CP000489_762(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 39 0.099
(Q5LW50) RecName: Full=50S ribosomal protein L29; &CP000031_482... 39 0.099
FM864216_132(FM864216|pid:none) Mycoplasma conjunctivae HRC/581T... 39 0.17
(B2GDW1) RecName: Full=50S ribosomal protein L29; &AP008937_150... 39 0.17
(P58084) RecName: Full=50S ribosomal protein L29P; &AE006641_64... 39 0.17
CP000660_737(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351... 38 0.29
AE017321_330(AE017321|pid:none) Wolbachia endosymbiont strain TR... 38 0.29
(A3DNB4) RecName: Full=50S ribosomal protein L29P; &CP000575_10... 37 0.38
(B4U752) RecName: Full=50S ribosomal protein L29; &CP001130_271... 37 0.38
(Q0VSJ5) RecName: Full=50S ribosomal protein L29; &AM286690_405... 37 0.49
(B1W3Z9) RecName: Full=50S ribosomal protein L29; &AP009493_282... 37 0.49
(A4FWB5) RecName: Full=50S ribosomal protein L29P; &(A6VGZ1) Re... 37 0.49
CP001601_397(CP001601|pid:none) Corynebacterium aurimucosum ATCC... 37 0.49
(B6IRR4) RecName: Full=50S ribosomal protein L29; &CP000613_697... 37 0.49
(A4XBN8) RecName: Full=50S ribosomal protein L29; &(A8M521) Rec... 37 0.49
AK146569_1(AK146569|pid:none) Mus musculus 17 days embryo heart ... 37 0.64
AK155717_1(AK155717|pid:none) Mus musculus B6-derived CD11 +ve d... 37 0.64
(Q9L0D2) RecName: Full=50S ribosomal protein L29; &AL939121_57(... 37 0.64
CP001402_2669(CP001402|pid:none) Sulfolobus islandicus M.16.4, c... 37 0.64
AP008957_1860(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 37 0.64
CP001399_2674(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 37 0.64
FB792323_1(FB792323|pid:none) Sequence 11596 from Patent WO20080... 36 0.84
(Q98N49) RecName: Full=50S ribosomal protein L29; &BA000012_233... 36 0.84
(Q748Z6) RecName: Full=50S ribosomal protein L29; &AE017180_283... 36 0.84
(A5IV26) RecName: Full=50S ribosomal protein L29; &(A6U3W7) Rec... 36 0.84
CP000922_113(CP000922|pid:none) Anoxybacillus flavithermus WK1, ... 36 1.1
(A9WH74) RecName: Full=50S ribosomal protein L29; &CP000909_232... 36 1.1
CP000813_110(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 36 1.1
(B2A4E7) RecName: Full=50S ribosomal protein L29; &CP001034_202... 36 1.1
(Q49ZG0) RecName: Full=50S ribosomal protein L29; &AP008934_671... 36 1.1
(B0K5Q1) RecName: Full=50S ribosomal protein L29; &(B0KCK8) Rec... 35 1.4
CP001620_1750(CP001620|pid:none) Corynebacterium kroppenstedtii ... 35 1.9
(A5VLJ7) RecName: Full=50S ribosomal protein L29; &(B2G8X0) Rec... 35 1.9
(A6TWH4) RecName: Full=50S ribosomal protein L29; &CP000724_429... 35 1.9
(Q18CG9) RecName: Full=50S ribosomal protein L29; &AM180355_82(... 35 1.9
FM177140_2596(FM177140|pid:none) Lactobacillus casei BL23 comple... 35 1.9
AL021481_5(AL021481|pid:none) Caenorhabditis elegans YAC Y43F4B,... 35 2.4
(Q6A6N4) RecName: Full=50S ribosomal protein L29; &AE017283_181... 35 2.4
(B5YG39) RecName: Full=50S ribosomal protein L29; &CP001147_138... 35 2.4
(A0QSD9) RecName: Full=50S ribosomal protein L29; &CP000480_140... 35 2.4
CR522870_1132(CR522870|pid:none) Desulfotalea psychrophila LSv54... 35 2.4
CP000867_1255(CP000867|pid:none) Methanococcus maripaludis C6, c... 35 2.4
CR940353_310(CR940353|pid:none) Theileria annulata strain Ankara... 35 2.4
(P10971) RecName: Full=50S ribosomal protein L29P; AltName: Full... 34 3.2
(A0PM71) RecName: Full=50S ribosomal protein L29; &(B2HSN9) Rec... 34 3.2
(Q0W1Y2) RecName: Full=50S ribosomal protein L29P; &AM114193_64... 34 3.2
(Q0ABG7) RecName: Full=50S ribosomal protein L29; &CP000453_461... 34 3.2
(Q7VKD9) RecName: Full=50S ribosomal protein L29; &AE017143_166... 34 3.2
(A8YXL3) RecName: Full=50S ribosomal protein L29; &CP000517_253... 34 3.2
(Q65P99) RecName: Full=50S ribosomal protein L29; &AE017333_124... 34 3.2
(Q47LK1) RecName: Full=50S ribosomal protein L29; &CP000088_263... 34 3.2
(Q74L81) RecName: Full=50S ribosomal protein L29; &AE017198_353... 34 4.2
(P22665) RecName: Full=50S ribosomal protein L29P; AltName: Full... 34 4.2
(B1VEU4) RecName: Full=50S ribosomal protein L29; &AM942444_323... 34 4.2
(Q5P324) RecName: Full=50S ribosomal protein L29; &CR555306_216... 34 4.2
A87141(A87141) 50S ribosomal protein L29 [imported] - Mycobacter... 34 4.2
(O32989) RecName: Full=50S ribosomal protein L29; &T45372(T4537... 34 4.2
FP312982_13(FP312982|pid:none) uncultured bacterial clone mtbs45... 34 4.2
CP000804_4305(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 34 4.2
(Q1WS98) RecName: Full=50S ribosomal protein L29; &CP000233_140... 34 4.2
Y13228_10(Y13228|pid:none) Mycobacterium bovis BCG DNA for ribos... 33 5.4
(A9KJI6) RecName: Full=50S ribosomal protein L29; &CP000885_361... 33 5.4
(Q92QG2) RecName: Full=50S ribosomal protein L29; &AL591688_136... 33 5.4
(Q2K9K8) RecName: Full=50S ribosomal protein L29; &CP000133_165... 33 5.4
(Q6L1C0) RecName: Full=50S ribosomal protein L29P; &AE017261_64... 33 5.4
(Q0K627) RecName: Full=50S ribosomal protein L29; &AM260479_339... 33 5.4
CP001132_1126(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 33 5.4
DQ530506_1(DQ530506|pid:none) Simulium sp. AF-2006 ribosomal pro... 33 5.4
(A6U867) RecName: Full=50S ribosomal protein L29; &CP000738_987... 33 7.1
(A4IJJ7) RecName: Full=50S ribosomal protein L29; &CP000557_114... 33 7.1
(Q5FM82) RecName: Full=50S ribosomal protein L29; &CP000033_284... 33 7.1
(A8MLE8) RecName: Full=50S ribosomal protein L29; &CP000853_492... 33 7.1
(A5UL82) RecName: Full=50S ribosomal protein L29P; &CP000678_75... 33 9.3
AY909415_1(AY909415|pid:none) Siniperca chuatsi clone C426 60S r... 33 9.3
(Q8UE26) RecName: Full=50S ribosomal protein L29; &AE007869_189... 33 9.3
(Q82X81) RecName: Full=50S ribosomal protein L29; &AL954747_409... 33 9.3
(Q975I8) RecName: Full=50S ribosomal protein L29P; &BA000023_47... 33 9.3
EF083602_1(EF083602|pid:none) Picea sitchensis clone WS0277_M19 ... 33 9.3
DQ156348_11(DQ156348|pid:none) Uncultured marine group II euryar... 33 9.3
BX248340_137(BX248340|pid:none) Mycobacterium bovis subsp. bovis... 33 9.3

>AE017341_741(AE017341|pid:none) Cryptococcus neoformans var.
neoformans JEC21 chromosome 1, complete sequence.
Length = 127

Score = 128 bits (322), Expect = 1e-28
Identities = 69/125 (55%), Positives = 90/125 (72%)
Frame = +2

Query: 26 AEKTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTV 205
+ K +AFEL++K+K LLE L EL+TEL+SLRV ++ + SKL KI TVRK+IARVLTV
Sbjct: 5 SSKIRAFELQSKSKQDLLEQLTELKTELASLRVQKIAGGSASKLTKINTVRKSIARVLTV 64

Query: 206 FNQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQRV 385
NQ Q+ +LR Y K S +P DLRYKKTRAIRRRLT K++ +T + K +FP+R
Sbjct: 65 INQKQRQNLREFY--KKSKYLPLDLRYKKTRAIRRRLTTKEASAITEKQHKKNIHFPKRK 122

Query: 386 FAVKA 400
A+KA
Sbjct: 123 IALKA 127

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 758,940,751
Number of extensions: 14026058
Number of successful extensions: 33467
Number of sequences better than 10.0: 208
Number of HSP's gapped: 33297
Number of HSP's successfully gapped: 208
Length of query: 214
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 91
Effective length of database: 659,166,577
Effective search space: 59984158507
Effective search space used: 59984158507
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.03 gvh: 0.54 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.00
nuc: 1.50 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: cytoplasmic

>> prediction for Contig-U16231-1 is nuc

VS (DIR, S) 31
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 0