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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16215-1
Contig ID Contig-U16215-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16215-1 (Contig-U16215-1Q) /CSM_Contig/Contig-U16215-1Q.Seq.d
ATTTTATTTTAATTTTATTTTTCAAATTTTTTTTTTATTATTTGTATTTG
TATTTATTTATATATTTTGTATTTTACTATTTTTTAAAAACATACAAAAA
AAAAA----------CTGATACCGATGTAGATTTAACCTACGAAGGTGAT
AACACAGTACTAATGCAAGCCGTTGCCAAAGCATTGCTTCAAGAGTTTAA
ATCCTATTCCACCGGTACAAAACGTATAACTGGTATGTTGAGTTACACCT
ATTCCAAGGGCCACATTGGTATCTTTTTAAGAAATAAAAACTTTTTCACC
AAACGTTTACACACAGAATCCCATCTATTGGATCCAGATGTATTGTTGGA
TGCTTTCATCTATCGTGAATTCAAACTCCTTCGTAACTTGATCAAAACTC
TTAGAGCCAAAGTAAAGAATGAAAAAATGACAGGTCTTCAAGCTTGGAAT
AGTAGTTTGGATTTAGTACTTCAATTGGCAAATGCTTACATTGAAAGAGT
TTCCATTGAGAAATTCTTGGAAGAAGTTCAAAAATCTCCAGAAGATATTA
AACCAATCTTAACTTCACTTTGTATCCTCTATGAATTAACAAAGATTGAA
AATGATCTTGGTTGGTTCCTTTCAAATAAATACTTTGCACCAGTTAAAGG
TCAAGCAATTGGTAATACAATCAATAAGGTTTGTGGTGCATTAAAAGATC
ATGCAATTCCATTAGTTAAAGCATTTGATATTCCATCTCAATTTTTAACT
GCTCCAATTATTGGTGATTGGGTTTTTCATTTTTCAAATCCAAATAATTG
TTAATTAGTAATTACTTAGGAGAGGAAAAAAAAAAAATTTAAAACACAAC
AAATTCAAATATTGTAAAAATCTTTAAAAATTTAAATTTTTTGTTTTCCC
AAATCGTCTATCATCCAAATGTTGTAAAAAAATAAAAATTAAATTAATGA
CTCATATATCTTTTTTTCTAAACAAAAATAATAAAAATAATAAAAAATAA
TAAAAAAAATAAAAAAAGTTAATAATATCAAAAAAAAAAAAAATTAAAAA
A
Gap gap included
Contig length 1041
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3830839
End point 3831882
Strand (PLUS/MINUS) PLUS
Number of clones 14
Number of EST 15
Link to clone list U16215
List of clone(s) 

est1=AFK611F,1,105
est2=VHP866F,1,105
est3=VHC314F,2,105
est4=VHO555F,4,105
est5=CHM281Z,106,653
est6=CHE425Z,111,778
est7=SSF360E,273,1041
est8=VHJ446Z,356,781
est9=CHL275Z,375,862
est10=CHM560Z,377,689
est11=FC-BS09Z,385,1008
est12=VSB350Z,415,982
est13=VHO555Z,488,841
est14=CHE832Z,571,853
est15=CFF144Z,811,923
Translated Amino Acid sequence 
FYFNFIFQIFFLLFVFVFIYIFCILLFFKNIQKK---

---DTDVDLTYEGDNTVLMQAVAKALLQEFKSYSTGTKRITGMLSYTYSKGHIGIFLRNK
NFFTKRLHTESHLLDPDVLLDAFIYREFKLLRNLIKTLRAKVKNEKMTGLQAWNSSLDLV
LQLANAYIERVSIEKFLEEVQKSPEDIKPILTSLCILYELTKIENDLGWFLSNKYFAPVK
GQAIGNTINKVCGALKDHAIPLVKAFDIPSQFLTAPIIGDWVFHFSNPNNC*lvit*erk
kkkfktqqiqil*kslki*ifcfpkssiiqml*knkn*indsyiffskqk**k**kiikk
ikkvnnikkkkn*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ilf*fyfsnfffiiciciylyilyftif*khtkkk---

---lipm*i*ptkvitqy*ckplpkhcfkslnpippvqnv*lvc*vtpipratlvsf*ei
ktfspnvytqnpiywiqmycwmlssivnsnsfvt*skllepk*rmkk*qvfklgivvwi*
yfnwqmltlkefplrnswkkfknlqkilnqs*lhfvssmn*qrlkmilvgsfqintlhql
kvkqlviqsirfvvh*kimqfh*lkhlifhlnf*llqllvigffifqiqiivn**llrrg
kkknlkhnkfkycknl*kfkffvfpnrlsskcckkikiklmthisfflnknnknnkk**k
k*kkliiskkkkikk

Frame B:
FYFNFIFQIFFLLFVFVFIYIFCILLFFKNIQKK---

---*yrcrfnlrr**hstnasrcqsiasrv*ilfhryktynwyvelhlfqgphwylfkk*
klfhqtfthripsigsrcivgcfhls*iqtps*ldqns*sqske*kndrsssle**fgfs
tsigkclh*ksfh*eilgrsskisrry*tnlnftlypl*inkd*k*swlvpfk*ilcts*
rssnw*ynq*glwcikrscnsis*si*ysisifncsnyw*lgfsffksk*llisnylgee
kkki*nttnsnivkifknlnflfsqivyhpnvvkk*kln**liylff*tkiikiiknnkk
nkks**yqkkkklk

Frame C:
fililffkfffyylylylfiyfvfyyflktykkk---

---DTDVDLTYEGDNTVLMQAVAKALLQEFKSYSTGTKRITGMLSYTYSKGHIGIFLRNK
NFFTKRLHTESHLLDPDVLLDAFIYREFKLLRNLIKTLRAKVKNEKMTGLQAWNSSLDLV
LQLANAYIERVSIEKFLEEVQKSPEDIKPILTSLCILYELTKIENDLGWFLSNKYFAPVK
GQAIGNTINKVCGALKDHAIPLVKAFDIPSQFLTAPIIGDWVFHFSNPNNC*lvit*erk
kkkfktqqiqil*kslki*ifcfpkssiiqml*knkn*indsyiffskqk**k**kiikk
ikkvnnikkkkn*k
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16215-1 (Contig-U16215-1Q)
/CSM_Contig/Contig-U16215-1Q.Seq.d
         (1051 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16215-1 (Contig-U16215-1Q) /CSM_Contig/Conti...  1407  0.0
Contig-U00749-1 (Contig-U00749-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U11895-1 (Contig-U11895-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U03464-1 (Contig-U03464-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U16597-1 (Contig-U16597-1Q) /CSM_Contig/Conti...    34  0.42
Contig-U16596-1 (Contig-U16596-1Q) /CSM_Contig/Conti...    34  0.42
Contig-U16059-1 (Contig-U16059-1Q) /CSM_Contig/Conti...    34  0.42
Contig-U15820-1 (Contig-U15820-1Q) /CSM_Contig/Conti...    34  0.42
Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Conti...    34  0.42
Contig-U12229-1 (Contig-U12229-1Q) /CSM_Contig/Conti...    34  0.42

>Contig-U16215-1 (Contig-U16215-1Q) /CSM_Contig/Contig-U16215-1Q.Seq.d
          Length = 1051

 Score = 1407 bits (710), Expect = 0.0
 Identities = 710/710 (100%)
 Strand = Plus / Plus

                                                                       
Query: 116 ctgataccgatgtagatttaacctacgaaggtgataacacagtactaatgcaagccgttg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ctgataccgatgtagatttaacctacgaaggtgataacacagtactaatgcaagccgttg 175

                                                                       
Query: 176 ccaaagcattgcttcaagagtttaaatcctattccaccggtacaaaacgtataactggta 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ccaaagcattgcttcaagagtttaaatcctattccaccggtacaaaacgtataactggta 235

                                                                       
Query: 236 tgttgagttacacctattccaagggccacattggtatctttttaagaaataaaaactttt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgttgagttacacctattccaagggccacattggtatctttttaagaaataaaaactttt 295

                                                                       
Query: 296 tcaccaaacgtttacacacagaatcccatctattggatccagatgtattgttggatgctt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcaccaaacgtttacacacagaatcccatctattggatccagatgtattgttggatgctt 355

                                                                       
Query: 356 tcatctatcgtgaattcaaactccttcgtaacttgatcaaaactcttagagccaaagtaa 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcatctatcgtgaattcaaactccttcgtaacttgatcaaaactcttagagccaaagtaa 415

                                                                       
Query: 416 agaatgaaaaaatgacaggtcttcaagcttggaatagtagtttggatttagtacttcaat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agaatgaaaaaatgacaggtcttcaagcttggaatagtagtttggatttagtacttcaat 475

                                                                       
Query: 476 tggcaaatgcttacattgaaagagtttccattgagaaattcttggaagaagttcaaaaat 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggcaaatgcttacattgaaagagtttccattgagaaattcttggaagaagttcaaaaat 535

                                                                       
Query: 536 ctccagaagatattaaaccaatcttaacttcactttgtatcctctatgaattaacaaaga 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctccagaagatattaaaccaatcttaacttcactttgtatcctctatgaattaacaaaga 595

                                                                       
Query: 596 ttgaaaatgatcttggttggttcctttcaaataaatactttgcaccagttaaaggtcaag 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttgaaaatgatcttggttggttcctttcaaataaatactttgcaccagttaaaggtcaag 655

                                                                       
Query: 656 caattggtaatacaatcaataaggtttgtggtgcattaaaagatcatgcaattccattag 715
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caattggtaatacaatcaataaggtttgtggtgcattaaaagatcatgcaattccattag 715

                                                                       
Query: 716 ttaaagcatttgatattccatctcaatttttaactgctccaattattggtgattgggttt 775
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttaaagcatttgatattccatctcaatttttaactgctccaattattggtgattgggttt 775

                                                             
Query: 776 ttcatttttcaaatccaaataattgttaattagtaattacttaggagagg 825
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ttcatttttcaaatccaaataattgttaattagtaattacttaggagagg 825


 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 898 cccaaatcgtctatcatccaaatgttgt 925
           ||||||||||||||||||||||||||||
Sbjct: 898 cccaaatcgtctatcatccaaatgttgt 925


>Contig-U00749-1 (Contig-U00749-1Q) /CSM_Contig/Contig-U00749-1Q.Seq.d
          Length = 643

 Score = 38.2 bits (19), Expect = 0.027
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 272 tctttttaagaaataaaaa 290
           |||||||||||||||||||
Sbjct: 118 tctttttaagaaataaaaa 100


>Contig-U11895-1 (Contig-U11895-1Q) /CSM_Contig/Contig-U11895-1Q.Seq.d
          Length = 1452

 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 285  taaaaactttttcaccaa 302
            ||||||||||||||||||
Sbjct: 1109 taaaaactttttcaccaa 1126


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,201
Number of Sequences: 8402
Number of extensions: 11201
Number of successful extensions: 1084
Number of sequences better than 10.0: 118
length of query: 1051
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1035
effective length of database: 7,941,110
effective search space: 8219048850
effective search space used: 8219048850
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.22
Homology vs DNA 
Query= Contig-U16215-1 (Contig-U16215-1Q) /CSM_Contig/Contig-U16215-1Q.Seq.d
         (1051 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ376849) Dictyostelium discoideum cDNA clone:ddc30b08, 3' ...  1291   0.0    1
(BJ383056) Dictyostelium discoideum cDNA clone:ddc46a22, 3' ...  1086   0.0    1
(AU284985) Dictyostelium discoideum gamete cDNA clone:FC-BS0...   846   0.0    2
(C92800) Dictyostelium discoideum slug cDNA, clone SSF360.        842   0.0    2
(AU261967) Dictyostelium discoideum vegetative cDNA clone:VS...   787   0.0    2
(BJ442285) Dictyostelium discoideum cDNA clone:ddv49l12, 3' ...   636   e-178  1
(BJ382452) Dictyostelium discoideum cDNA clone:ddc44e20, 3' ...   573   e-159  1
(AU072901) Dictyostelium discoideum slug cDNA, clone SSF360.      476   e-130  1
(BJ445793) Dictyostelium discoideum cDNA clone:ddv60m13, 3' ...   452   e-122  1
(BJ378296) Dictyostelium discoideum cDNA clone:ddc31p08, 3' ...   339   1e-88  1
(BJ383889) Dictyostelium discoideum cDNA clone:ddc47g15, 3' ...   264   6e-66  1
(ET386697) S0063G09_SP6 CHORI-214 Salmo salar genomic clone ...    52   0.043  1
(BX294434) Zebrafish DNA sequence from clone CH211-236H17 in...    48   0.67   1
(CU041387) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.67   1
(CZ685535) OA_BBa0171O20.r OA_BBa Oryza alta genomic clone O...    48   0.67   1
(CZ641933) OM__Ba0187L11.f OM__Ba Oryza minuta genomic clone...    48   0.67   1
(CG817083) SOYEI40TH LargeInsertSoybeanGenLib Glycine max ge...    36   1.8    2
(BV389071) S244P66FC6.T0 AlaskaGrayWolf Canis lupus STS geno...    34   1.8    2
(EA073002) Sequence 360 from patent US 7183083.                    46   2.6    1
(AX145567) Sequence 4289 from Patent WO0134809.                    46   2.6    1
(AX142555) Sequence 1277 from Patent WO0134809.                    46   2.6    1
(AR886699) Sequence 360 from patent US 7060458.                    46   2.6    1
(AR486203) Sequence 4289 from patent US 6703492.                   46   2.6    1
(AR484220) Sequence 1277 from patent US 6703492.                   46   2.6    1
(EK335570) 1095467040640 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.6    1
(EJ651377) 1092954002250 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.6    1
(EJ649076) 1092953004362 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.6    1
(EG919002) EST_ssal_evf_57999 ssalevf mixed_tissue Salmo sal...    46   2.6    1
(DY262964) IC0AAA10BG10RM1 CitNFL Citrus clementina cDNA 5',...    46   2.6    1
(CP000029) Staphylococcus epidermidis RP62A, complete genome.      46   2.6    1
(AF270249) Staphylococcus epidermidis strain SR1 clone step....    46   2.6    1
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g...    46   2.6    1
(EH638519) EST9627 LK04 Laupala kohalensis cDNA clone 106102...    34   6.7    2
(EH631598) EST2705 LK04 Laupala kohalensis cDNA clone 106102...    34   6.7    2
(FH331041) CHO_OF4579xm21r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   8.3    2
(EK233100) 1095460189226 Global-Ocean-Sampling_GS-31-01-01-1...    34   9.3    2

>(BJ376849) Dictyostelium discoideum cDNA clone:ddc30b08, 3' end,
           single read.
          Length = 668

 Score = 1291 bits (651), Expect = 0.0
 Identities = 654/655 (99%)
 Strand = Plus / Minus


Query: 121 accgatgtagatttaacctacgaaggtgataacacagtactaatgcaagccgttgccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 accgatgtagatttaacctacgaaggtgataacacagtactaatgcaagccgttgccaaa 609


Query: 181 gcattgcttcaagagtttaaatcctattccaccggtacaaaacgtataactggtatgttg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 608 gcattgcttcaagagtttaaatcctatttcaccggtacaaaacgtataactggtatgttg 549


Query: 241 agttacacctattccaagggccacattggtatctttttaagaaataaaaactttttcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agttacacctattccaagggccacattggtatctttttaagaaataaaaactttttcacc 489


Query: 301 aaacgtttacacacagaatcccatctattggatccagatgtattgttggatgctttcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaacgtttacacacagaatcccatctattggatccagatgtattgttggatgctttcatc 429


Query: 361 tatcgtgaattcaaactccttcgtaacttgatcaaaactcttagagccaaagtaaagaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tatcgtgaattcaaactccttcgtaacttgatcaaaactcttagagccaaagtaaagaat 369


Query: 421 gaaaaaatgacaggtcttcaagcttggaatagtagtttggatttagtacttcaattggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaaaaaatgacaggtcttcaagcttggaatagtagtttggatttagtacttcaattggca 309


Query: 481 aatgcttacattgaaagagtttccattgagaaattcttggaagaagttcaaaaatctcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatgcttacattgaaagagtttccattgagaaattcttggaagaagttcaaaaatctcca 249


Query: 541 gaagatattaaaccaatcttaacttcactttgtatcctctatgaattaacaaagattgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaagatattaaaccaatcttaacttcactttgtatcctctatgaattaacaaagattgaa 189


Query: 601 aatgatcttggttggttcctttcaaataaatactttgcaccagttaaaggtcaagcaatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aatgatcttggttggttcctttcaaataaatactttgcaccagttaaaggtcaagcaatt 129


Query: 661 ggtaatacaatcaataaggtttgtggtgcattaaaagatcatgcaattccattagttaaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggtaatacaatcaataaggtttgtggtgcattaaaagatcatgcaattccattagttaaa 69


Query: 721 gcatttgatattccatctcaatttttaactgctccaattattggtgattgggttt 775
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  gcatttgatattccatctcaatttttaactgctccaattattggtgattgggttt 14

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 882,778,678
Number of extensions: 52151043
Number of successful extensions: 4216090
Number of sequences better than 10.0: 36
Length of query: 1051
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1027
Effective length of database: 96,409,374,237
Effective search space: 99012427341399
Effective search space used: 99012427341399
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.21
Homology vs Protein 
Query= Contig-U16215-1 (Contig-U16215-1Q) /CSM_Contig/Contig-U16215-1Q.Seq.d
         (1051 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77053_1(U77053|pid:none) Phalaenopsis cv. 'True Lady' acyl-CoA ...   130   1e-28
(O64894) RecName: Full=Acyl-coenzyme A oxidase, peroxisomal;    ...   128   3e-28
U66299_1(U66299|pid:none) Phalaenopsis sp. 'True Lady' acyl-CoA ...   128   3e-28
AF202987_1(AF202987|pid:none) Petroselinum crispum acyl-CoA oxid...   124   7e-27
(O65201) RecName: Full=Acyl-coenzyme A oxidase 2, peroxisomal;  ...   123   1e-26
AF057043_1(AF057043|pid:none) Arabidopsis thaliana acyl-CoA oxid...   123   1e-26
AM420293_7173(AM420293|pid:none) Saccharopolyspora erythraea NRR...   108   4e-22
AK317051_1(AK317051|pid:none) Arabidopsis thaliana AT5G65110 mRN...   108   4e-22
AL805950_2(AL805950|pid:none) Mouse DNA sequence from clone RP23...   104   5e-21
AF051203_1(AF051203|pid:none) Picea mariana acyl-CoA oxidase hom...   103   1e-20
CP000479_1992(CP000479|pid:none) Mycobacterium avium 104, comple...   102   3e-20
BX120012_1(BX120012|pid:none) Zebrafish DNA sequence from clone ...    94   8e-18
CU458896_3560(CU458896|pid:none) Mycobacterium abscessus chromos...    94   8e-18
AP006618_2492(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...    94   1e-17
CP000384_3420(CP000384|pid:none) Mycobacterium sp. MCS, complete...    92   2e-17
AP011115_1718(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...    90   1e-16
AP008957_1663(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    90   1e-16
AX155021_1(AX155021|pid:none) Sequence 67 from Patent WO0138484.       89   2e-16
AP009493_6404(AP009493|pid:none) Streptomyces griseus subsp. gri...    88   6e-16
CP000656_2707(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    87   1e-15
CP000088_2232(CP000088|pid:none) Thermobifida fusca YX, complete...    86   2e-15
(Q9NUZ1) RecName: Full=Acyl-coenzyme A oxidase-like protein;    ...    84   8e-15
AP009152_1677(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ...    80   9e-14
AC117081_72(AC117081|pid:none) Dictyostelium discoideum chromoso...    75   4e-12
CR382131_1362(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    75   5e-12
(O74934) RecName: Full=Acyl-coenzyme A oxidase 1;          Short...    75   5e-12
AB212678_1(AB212678|pid:none) Arthrobacter ureafaciens aco gene ...    74   7e-12
CP000474_2049(CP000474|pid:none) Arthrobacter aurescens TC1, com...    74   1e-11
EU973313_1(EU973313|pid:none) Zea mays clone 396607 acyl-coenzym...    74   1e-11
DQ842227_1(DQ842227|pid:none) Sus scrofa breed Landrace palmitoy...    73   1e-11
CP000910_2046(CP000910|pid:none) Renibacterium salmoninarum ATCC...    73   1e-11
BT064264_1(BT064264|pid:none) Zea mays full-length cDNA clone ZM...    72   2e-11
AC116979_31(AC116979|pid:none) Dictyostelium discoideum chromoso...    72   3e-11
(Q8HYL8) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    71   6e-11
AC116979_33(AC116979|pid:none) Dictyostelium discoideum chromoso...    71   7e-11
AM420293_5368(AM420293|pid:none) Saccharopolyspora erythraea NRR...    71   7e-11
(Q15067) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    70   9e-11
(Q9LLH9) RecName: Full=Acyl-coenzyme A oxidase 3, peroxisomal;  ...    70   9e-11
I38095(I38095) acyl-CoA oxidase (EC 1.3.3.6), peroxisomal - huma...    70   9e-11
AF207994_1(AF207994|pid:none) Arabidopsis thaliana acyl-CoA oxid...    70   9e-11
AK291793_1(AK291793|pid:none) Homo sapiens cDNA FLJ75886 complet...    70   9e-11
BT067440_1(BT067440|pid:none) Zea mays full-length cDNA clone ZM...    70   1e-10
BT033561_1(BT033561|pid:none) Zea mays full-length cDNA clone ZM...    70   1e-10
(Q5RC19) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    69   2e-10
U07866_1(U07866|pid:none) Human peroxisomal fatty acyl-coA oxida...    69   3e-10
CP001628_1101(CP001628|pid:none) Micrococcus luteus NCTC 2665, c...    69   4e-10
(O65202) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    69   4e-10
AF463454_1(AF463454|pid:none) Phascolarctos cinereus acyl-CoA ox...    69   4e-10
AL161544_35(AL161544|pid:none) Arabidopsis thaliana DNA chromoso...    69   4e-10
AK028876_1(AK028876|pid:none) Mus musculus 10 days neonate skin ...    68   5e-10
AB034914_1(AB034914|pid:none) Mus musculus muspaox mRNA for pero...    68   5e-10
AL607108_23(AL607108|pid:none) Mouse DNA sequence from clone RP2...    68   5e-10
CP001341_1861(CP001341|pid:none) Arthrobacter chlorophenolicus A...    68   5e-10
AJ001302_1(AJ001302|pid:none) Yarrowia lipolytica ACO4 gene.  &C...    68   5e-10
(Q9R0H0) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    68   5e-10
(Q9ZQP2) RecName: Full=Putative peroxisomal acyl-coenzyme A oxid...    68   5e-10
AK292965_1(AK292965|pid:none) Homo sapiens cDNA FLJ76484 complet...    68   6e-10
(Q9LMI7) RecName: Full=Putative acyl-coenzyme A oxidase 3.2, per...    67   1e-09
BC083524_1(BC083524|pid:none) Danio rerio zgc:92584, mRNA (cDNA ...    66   2e-09
BC097101_1(BC097101|pid:none) Danio rerio zgc:92584, mRNA (cDNA ...    66   2e-09
AM711867_829(AM711867|pid:none) Clavibacter michiganensis subsp....    66   2e-09
AC149079_18(AC149079|pid:none) Medicago truncatula clone mth2-75...    65   3e-09
AK170217_1(AK170217|pid:none) Mus musculus NOD-derived CD11c +ve...    65   4e-09
BC131514_1(BC131514|pid:none) Homo sapiens acyl-Coenzyme A oxida...    65   5e-09
AF404404_1(AF404404|pid:none) Glycine max acyl-CoA oxidase (ACX1...    65   5e-09
BC134478_1(BC134478|pid:none) Bos taurus acyl-Coenzyme A oxidase...    64   9e-09
AY817111_1(AY817111|pid:none) Lycopersicon cheesmaniae peroxisom...    63   2e-08
CR848332_1(CR848332|pid:none) Xenopus tropicalis finished cDNA, ...    63   2e-08
BC125765_1(BC125765|pid:none) Xenopus tropicalis hypothetical pr...    63   2e-08
AY817109_1(AY817109|pid:none) Lycopersicon esculentum peroxisoma...    63   2e-08
AF404403_1(AF404403|pid:none) Glycine max acyl-CoA oxidase (ACX1...    62   4e-08
BC089698_1(BC089698|pid:none) Xenopus tropicalis MGC108278 prote...    61   6e-08
(P07872) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    61   6e-08
(Q9Z1N0) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    60   1e-07
BC063727_1(BC063727|pid:none) Xenopus laevis hypothetical protei...    57   8e-07
(Q5RAU0) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 3;   ...    57   1e-06
AM942444_1844(AM942444|pid:none) Corynebacterium urealyticum DSM...    57   1e-06
U87813_1(U87813|pid:none) Dictyostelium discoideum AcoA (acoA) m...    56   2e-06
AE017347_31(AE017347|pid:none) Cryptococcus neoformans var. neof...    53   2e-05
AY817110_1(AY817110|pid:none) Lycopersicon esculentum peroxisoma...    52   3e-05
AK298402_1(AK298402|pid:none) Homo sapiens cDNA FLJ58373 complet...    50   1e-04
(Q99424) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 2;   ...    50   1e-04
EF085068_1(EF085068|pid:none) Picea sitchensis clone WS02813_G04...    48   5e-04
AK028818_1(AK028818|pid:none) Mus musculus 10 days neonate skin ...    46   0.002
(Q9EPL9) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 3;   ...    46   0.002
T21329(T21329) hypothetical protein F25C8.1 - Caenorhabditis ele...    45   0.003
AJ278430_1(AJ278430|pid:none) Mus musculus mRNA for pristanoyl-C...    45   0.003
BC044725_1(BC044725|pid:none) Mus musculus acyl-Coenzyme A oxida...    45   0.003
AM920428_1441(AM920428|pid:none) Penicillium chrysogenum Wiscons...    45   0.003
(Q54GQ6) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    44   0.007
AY766151_1(AY766151|pid:none) Ovibos moschatus acyl-CoA oxidase ...    44   0.009
AC036106_4(AC036106|pid:none) Arabidopsis thaliana chromosome 3 ...    44   0.012
(Q6BRD5) RecName: Full=Acyl-coenzyme A oxidase;          Short=A...    44   0.012
CR382136_852(CR382136|pid:none) Debaryomyces hansenii chromosome...    44   0.012
AM920435_180(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    42   0.036
(Q6FY63) RecName: Full=Acyl-coenzyme A oxidase;          Short=A...    41   0.062
AP007175_12(AP007175|pid:none) Aspergillus oryzae RIB40 genomic ...    41   0.080
AC023912_17(AC023912|pid:none) Arabidopsis thaliana chromosome I...    40   0.10
CP000581_266(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    40   0.10
(Q00468) RecName: Full=Acyl-coenzyme A oxidase 2;          Short...    40   0.18
FN392319_1331(FN392319|pid:none) Pichia pastoris GS115 chromosom...    40   0.18
(Q9Y7B1) RecName: Full=Acyl-coenzyme A oxidase;          Short=A...    39   0.40
AF462227_1(AF462227|pid:none) Narcissus pseudonarcissus putative...    38   0.52
AM180355_3724(AM180355|pid:none) Clostridium difficile 630 compl...    38   0.52
AX155023_1(AX155023|pid:none) Sequence 69 from Patent WO0138484.       38   0.68
(Q756A9) RecName: Full=Acyl-coenzyme A oxidase;          Short=A...    36   2.0
CP000442_658(CP000442|pid:none) Burkholderia ambifaria AMMD chro...    36   2.6
EU214320_1(EU214320|pid:none) Cohniella ascendens voucher FP 590...    36   2.6
EU123658_1(EU123658|pid:none) Dichaea rubroviolacea voucher W. M...    35   3.4
AY869980_1(AY869980|pid:none) Dichaea campanulata maturase (matK...    35   3.4
AF055922_10(AF055922|pid:none) Streptomyces fradiae dipeptidil c...    35   3.4
AF145049_1(AF145049|pid:none) Streptomyces fradiae tylosin-biosy...    35   3.4
(P34355) RecName: Full=Probable peroxisomal acyl-coenzyme A oxid...    35   4.4
AY870001_1(AY870001|pid:none) Promenaea ovatiloba maturase (matK...    35   4.4
(P11356) RecName: Full=Acyl-coenzyme A oxidase 2;          Short...    35   4.4
AY870000_1(AY870000|pid:none) Promenaea xanthina maturase (matK)...    35   4.4
EU123614_1(EU123614|pid:none) Dichaea ancoraelabia voucher W. M....    35   4.4
EU123637_1(EU123637|pid:none) Dichaea lankesteri voucher F. Pupu...    35   5.8
EU123626_1(EU123626|pid:none) Dichaea elliptica voucher F. Pupul...    35   5.8
CP000395_842(CP000395|pid:none) Borrelia afzelii PKo, complete g...    35   5.8
FM992690_189(FM992690|pid:none) Candida dubliniensis CD36 chromo...    35   5.8
CP001517_39(CP001517|pid:none) Borrelia sp. SV1 plasmid SV1_cp32...    35   5.8
EU123612_1(EU123612|pid:none) Dichaea amparoana voucher D. Bogar...    35   5.8
AL929353_60(AL929353|pid:none) Plasmodium falciparum strain 3D7,...    35   5.8
EU123611_1(EU123611|pid:none) Dichaea acroblephara voucher F. Pu...    34   7.5
BA000023_1246(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    34   7.5
EU214390_1(EU214390|pid:none) Maxillaria adendrobium voucher JBL...    34   9.8
EU123651_1(EU123651|pid:none) Dichaea pendula voucher F. Pupulin...    34   9.8
EU214327_1(EU214327|pid:none) Dichaea costaricensis voucher Chas...    34   9.8
EU214331_1(EU214331|pid:none) Dichaea schlechteri voucher DB 329...    34   9.8
AY869952_1(AY869952|pid:none) Pescatoria cerina maturase (matK) ...    34   9.8
EU123638_1(EU123638|pid:none) Dichaea longa voucher W. M. Whitte...    34   9.8
AY869950_1(AY869950|pid:none) Pescatoria pulvinaris maturase (ma...    34   9.8
EU123615_1(EU123615|pid:none) Dichaea caveroi voucher W. M. Whit...    34   9.8
EU123663_1(EU123663|pid:none) Dichaea sp. KMN-2007 voucher W. M....    34   9.8
EU123617_1(EU123617|pid:none) Dichaea cf. lagotis KMN-2007 vouch...    34   9.8
EU123653_1(EU123653|pid:none) Dichaea poicillantha voucher F. Pu...    34   9.8
AY870010_1(AY870010|pid:none) Maxillaria violaceopunctata matura...    34   9.8
EU214334_1(EU214334|pid:none) Dichaea trulla voucher FP 5130 mat...    34   9.8
AY869987_1(AY869987|pid:none) Galeottia burkei maturase (matK) g...    34   9.8
EU123652_1(EU123652|pid:none) Dichaea poicillantha voucher M. Bl...    34   9.8
EU214391_1(EU214391|pid:none) Maxillaria adendrobium voucher JBL...    34   9.8
AY869989_1(AY869989|pid:none) Galeottia ciliata maturase (matK) ...    34   9.8
AY869986_1(AY869986|pid:none) Galeottia colombiana maturase (mat...    34   9.8
EU123669_1(EU123669|pid:none) Dichaea trulla voucher W. M. Whitt...    34   9.8
EU123620_1(EU123620|pid:none) Dichaea cryptarrhena voucher F. Pu...    34   9.8
EU214402_1(EU214402|pid:none) Heterotaxis maleolens voucher FP 1...    34   9.8
EU123670_1(EU123670|pid:none) Dichaea trulla voucher W. M. Whitt...    34   9.8
AY869953_1(AY869953|pid:none) Pescatoria lamellosa maturase (mat...    34   9.8
AY869954_1(AY869954|pid:none) Pescatoria coronaria maturase (mat...    34   9.8
AY869992_1(AY869992|pid:none) Galeottia fimbriata maturase (matK...    34   9.8
EU123616_1(EU123616|pid:none) Dichaea cf. lagotis KMN-2007 vouch...    34   9.8
AY869993_1(AY869993|pid:none) Galeottia grandiflora maturase (ma...    34   9.8
EU214387_1(EU214387|pid:none) Maxillaria adendrobium voucher JBL...    34   9.8
EU214423_1(EU214423|pid:none) Pescatoria cerina voucher FP 2017 ...    34   9.8
EU214400_1(EU214400|pid:none) Maxillaria fulgens voucher RG 21 m...    34   9.8
EU123618_1(EU123618|pid:none) Dichaea cf. lagotis KMN-2007 vouch...    34   9.8
EU123647_1(EU123647|pid:none) Dichaea oxyglossa voucher D. Bogar...    34   9.8
EU123645_1(EU123645|pid:none) Dichaea obovatipetala voucher F. P...    34   9.8
CP000814_1408(CP000814|pid:none) Campylobacter jejuni subsp. jej...    34   9.8
EU214389_1(EU214389|pid:none) Maxillaria adendrobium voucher JBL...    34   9.8

>U77053_1(U77053|pid:none) Phalaenopsis cv. 'True Lady' acyl-CoA
            oxidase (PACO1) gene, exons 2 through 7 and complete cds.
          Length = 709

 Score =  130 bits (326), Expect = 1e-28
 Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
 Frame = +1

Query: 118  DTDVDLTYEGDNTVLMQAVAKALLQEFKS-YSTGTKRITGMLSYTYSKGHIGIFLRNKNF 294
            D D+  T+EGDNTVL+Q VA  LL+++KS +  GT  +T    + Y +  +  ++   N
Sbjct: 484  DHDIFQTFEGDNTVLLQQVAGDLLKQYKSKFRGGTLTVT----WNYLRESMASYIAQPNP 539

Query: 295  FTKRLHTESHLLDPDVLLDAFIYREFKLLRNLIKTLRAKVKNEKMTGLQAWNSSLDLVLQ 474
             T R   E HL DP+  LDAF YR  +LL++L   LR   K   + G  AWN  L+ +L
Sbjct: 540  VTARWQGEEHLRDPNFQLDAFRYRTSRLLQSLGLRLRKHTKT--LGGFGAWNRCLNHLLT 597

Query: 475  LANAYIERVSIEKFLEEVQKSPE-DIKPILTSLCILYELTKIENDLGWFLSNKYFAPVKG 651
            LA ++IE V + KF+E VQK P+ +   +L  LC LY L +I ND+G + +  Y AP K
Sbjct: 598  LAESHIESVILAKFIEAVQKCPDKNTGNVLKLLCDLYALDRIWNDIGTYRNVDYVAPNKA 657

Query: 652  QAIGNTINKVCGALKDHAIPLVKAFDIPSQFLTAPI 759
            +AI   ++ +   ++  A  LV AF +P   + API
Sbjct: 658  KAIHKLVDYLSFQVRGIAGELVDAFGLPEIVIRAPI 693

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,431,268,903
Number of extensions: 28471284
Number of successful extensions: 62711
Number of sequences better than 10.0: 161
Number of HSP's gapped: 62621
Number of HSP's successfully gapped: 165
Length of query: 350
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 221
Effective length of database: 633,664,753
Effective search space: 140039910413
Effective search space used: 140039910413
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.03  gvh: 0.65  alm: 0.43  top: 0.40  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U16215-1 is exc
VS (DIR, S) 1
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 5
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0