Contig-U16167-1 |
Contig ID |
Contig-U16167-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1009 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
8141352 |
End point |
8142259 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
3 |
Number of EST |
4 |
Link to clone list |
U16167 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 3.19 |
Homology vs DNA |
Query= Contig-U16167-1 (Contig-U16167-1Q) /CSM_Contig/Contig-U16167-1Q.Seq.d (1019 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC117073) Dictyostelium discoideum chromosome 2 map 6045872... 656 0.0 5 (C23663) Dictyostelium discoideum gamete cDNA, clone FC-AJ10. 718 0.0 1 (BJ413489) Dictyostelium discoideum cDNA clone:ddv15l22, 5' ... 470 e-173 2 (AU284526) Dictyostelium discoideum gamete cDNA clone:FC-BB1... 593 e-165 1 (BJ431879) Dictyostelium discoideum cDNA clone:ddv15l22, 3' ... 454 e-139 2 (CR962127) Medicago truncatula chromosome 5 clone mth2-181n9... 44 0.007 6 (AC115584) Dictyostelium discoideum chromosome 2 map complem... 38 0.007 7 (BM883828) rc23c11.y1 Meloidogyne hapla egg pAMP1 v1 Meloido... 54 0.011 1 (AU261824) Dictyostelium discoideum vegetative cDNA clone:VS... 46 0.029 2 (ER351375) 1092347001781 Global-Ocean-Sampling_GS-34-01-01-1... 36 0.034 2 (AU263823) Dictyostelium discoideum vegetative cDNA clone:VS... 46 0.039 2 (CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 32 0.087 9 (AU262827) Dictyostelium discoideum vegetative cDNA clone:VS... 46 0.11 2 (AQ945516) Sheared DNA-45J12.TR Sheared DNA Trypanosoma bruc... 46 0.12 2 (AM477557) Vitis vinifera contig VV78X095071.3, whole genome... 36 0.12 5 (AC190138) Trichinella spiralis BAC clone TS195-49H12 from c... 50 0.16 1 (AL359332) Human chromosome 14 DNA sequence BAC R-403E10 of ... 50 0.16 1 (AL359212) Human chromosome 14 DNA sequence BAC R-10A2 of li... 50 0.16 1 (AC119756) Rattus norvegicus clone CH230-189P9, *** SEQUENCI... 50 0.16 1 (AC090073) Homo sapiens chromosome 5 clone CTD-3221I19, WORK... 50 0.16 1 (AC016481) Homo sapiens clone RP11-30H11, WORKING DRAFT SEQU... 50 0.16 1 (EF533701) Glycine max clone BAC GM_WBb095P01, complete sequ... 44 0.17 5 (AF260826) Cochliomyia hominivorax mitochondrion, complete g... 32 0.22 6 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.29 7 (AC154203) Mus musculus BAC clone RP24-387L1 from chromosome... 38 0.36 2 (U88631) Lucilia cuprina acetylcholinesterase mRNA, complete... 34 0.44 2 (CU062492) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.54 4 (EK508898) 1095515468971 Global-Ocean-Sampling_GS-32-01-01-1... 38 0.63 2 (BX321910) Zebrafish DNA sequence from clone DKEYP-25B4 in l... 48 0.65 1 (AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.65 1 (AP004668) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.65 1 (AP004395) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.65 1 (AL445487) Human DNA sequence from clone RP11-417L14 on chro... 48 0.65 1 (AL157763) Human DNA sequence from clone RP11-27D9 on chromo... 48 0.65 1 (AC149752) Bos taurus clone CH240-336F19, WORKING DRAFT SEQU... 48 0.65 1 (CU929247) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.65 1 (AC068376) Homo sapiens chromosome 3 clone RP11-817B15 map 3... 48 0.65 1 (CR391963) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.65 1 (CR352211) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.65 1 (AC164960) Bos taurus clone CH240-162J18, WORKING DRAFT SEQU... 48 0.65 1 (EJ515454) 1092955085023 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.65 1 (CP000776) Campylobacter hominis ATCC BAA-381, complete genome. 48 0.65 1 (ER859288) POTL491TF Solanum tuberosum RHPOTKEY BAC ends Sol... 34 0.75 3 (AM426893) Vitis vinifera contig VV78X229083.12, whole genom... 40 0.84 3 (AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 0.87 10 (AC218602) Bos taurus clone CH240-29C6, WORKING DRAFT SEQUEN... 42 0.87 6 (BX470119) Zebrafish DNA sequence from clone CH211-225L4 in ... 40 0.99 2 (AC114258) Dictyostelium discoideum chromosome 2 map complem... 40 1.0 4 (ET950472) CHO_OF449xn08f2.ab1 CHO_OF Nicotiana tabacum geno... 32 1.1 3 (AX348912) Sequence 370 from Patent WO0202807. 42 1.1 4 (AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 34 1.1 5 (AC008603) Homo sapiens chromosome 5 clone CTB-107P3, comple... 34 1.3 5 (CU695126) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.3 2 (BX548009) Zebrafish DNA sequence from clone CH211-237K17 in... 36 1.4 2 (CU424451) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.4 4 (AC202826) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 44 1.5 7 (AZ530928) ENTBR71TR Entamoeba histolytica Sheared DNA Entam... 32 1.7 2 (CU570992) Zebrafish DNA sequence from clone DKEY-37N24 in l... 42 1.7 5 (AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 40 1.8 8 (BP160923) Sus scrofa mRNA, clone:THY010043B04, 5' end, expr... 36 1.8 2 (CZ544219) SRAA-aad54f05.g1 Strongyloides ratti whole genome... 38 1.8 2 (AJ422212) Lucilia sericata complete mitochondrial genome. 32 1.9 5 (AC130805) Medicago truncatula clone mth2-9n1, complete sequ... 38 1.9 5 (CR762421) Zebrafish DNA sequence from clone DKEYP-15D8 in l... 40 2.0 3 (DC219005) Plasmodium berghei strain ANKA cDNA clone:MZ00036... 38 2.0 2 (DC218941) Plasmodium berghei strain ANKA cDNA clone:MZ00027... 38 2.1 2 (AC137822) Medicago truncatula clone mth2-31e20, complete se... 40 2.1 4 (EJ043257) 1095454102943 Global-Ocean-Sampling_GS-26-01-01-1... 42 2.2 2 (EK391801) 1095469505123 Global-Ocean-Sampling_GS-31-01-01-1... 38 2.2 2 (AE017263) Mesoplasma florum L1 complete genome. 32 2.2 15 (AM441691) Vitis vinifera, whole genome shotgun sequence, co... 34 2.4 3 (BX936436) Zebrafish DNA sequence from clone DKEY-16H19 in l... 46 2.6 1 (AC132083) Mus musculus BAC clone RP24-540G23 from chromosom... 46 2.6 1 (AC122522) Mus musculus BAC clone RP24-486D23 from chromosom... 46 2.6 1 (AC202610) Macaca mulatta BAC CH250-366O3 (Children's Hospi... 46 2.6 1 (AM474428) Vitis vinifera contig VV78X056850.3, whole genome... 46 2.6 1 (AM469105) Vitis vinifera contig VV78X055418.6, whole genome... 46 2.6 1 (Z22180) Caenorhabditis elegans Cosmid K11H3. 46 2.6 1 (AF067608) Caenorhabditis elegans cosmid B0511, complete seq... 46 2.6 1 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 46 2.6 1 (AC108174) Homo sapiens chromosome 5 clone RP11-78C3, comple... 46 2.6 1 (AC004843) Homo sapiens PAC clone RP4-612F12 from 7, complet... 46 2.6 1 (AC133918) Homo sapiens chromosome 16 clone RP11-188C14, WOR... 46 2.6 1 (AC098506) Rattus norvegicus clone CH230-64B13, *** SEQUENCI... 46 2.6 1 (CU570718) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.6 1 (CU062562) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.6 1 (AC222779) Bos taurus clone CH240-439B21, WORKING DRAFT SEQU... 46 2.6 1 (AC212364) Zea mays chromosome 2 clone CH201-292L14; ZMMBBc0... 46 2.6 1 (AC203828) Zea mays chromosome 2 clone CH201-548L3; ZMMBBc05... 46 2.6 1 (AZ137858) SP_0180_A2_D06_T7A Strongylocentrotus purpuratus,... 46 2.6 1 (ER565340) 1093015766980 Global-Ocean-Sampling_GS-36-01-01-2... 46 2.6 1 (ER489524) 1093015319922 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.6 1 (EK358209) 1095468758375 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.6 1 (EJ857443) 1093017951882 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.6 1 (EJ150518) 1092343756394 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.6 1 (CT563039) A BAC library has been constructed from cultivar ... 46 2.6 1 (CT329789) Sus scrofa genomic clone CH242-356N20, genomic su... 46 2.6 1 (CR912496) Sus scrofa BES. 46 2.6 1 (AG634853) Macaca fuscata fuscata DNA, clone: MSB2-038J01_R,... 46 2.6 1 (CL107179) ISB1-47O14_T7.1 ISB1 Xenopus (Silurana) tropicali... 46 2.6 1 (CG373416) OG5BD61TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 2.6 1 (CG144240) PUFOG54TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 2.6 1 (BZ964687) PUDFC83TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 2.6 1 (AG195423) Pan troglodytes DNA, clone: RP43-074G09.T7. 46 2.6 1 (ES546671) TF1004C01pTV TF1 Tribolium castaneum cDNA, mRNA s... 46 2.6 1 (ES545202) TB1005F01pTV TB1 Tribolium castaneum cDNA, mRNA s... 46 2.6 1 (DT796254) 127416656 TL1 Tribolium castaneum cDNA clone 83I1... 46 2.6 1 (DN755970) GL-Cf-12766 GLGC-LIB0001-cf Canis familiaris Norm... 46 2.6 1 (CT808283) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 2.6 1 (CT781628) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 2.6 1 (CD451011) USDA-FP_103049 Adult Alate Brown Citrus Aphid Tox... 46 2.6 1 (GE324731) OXBB-aaa52e01.b1 Oxytricha_pSMART_OXBB Sterkiella... 46 2.6 1 (FC676771) CAXX11543.fwd CAXX Lottia gigantea from male gona... 46 2.6 1 (CP000896) Acholeplasma laidlawii PG-8A, complete genome. 46 2.6 1 (AC140960) Papio anubis clone RP41-467F17, WORKING DRAFT SEQ... 40 2.6 8 (AL356112) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 2.7 4 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 34 2.7 7 (BX469896) Zebrafish DNA sequence from clone DKEY-52L6 in li... 38 2.7 4 (AM435322) Vitis vinifera contig VV78X047008.4, whole genome... 36 2.8 2 (AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 36 2.8 7 (AL590155) Zebrafish DNA sequence from clone RP71-79P20 in l... 40 2.9 4 (AM450616) Vitis vinifera contig VV78X061582.5, whole genome... 40 3.1 2 (AP000638) Homo sapiens genomic DNA, chromosome 11q22 clone:... 42 3.1 3 (AB217841) Clostridium botulinum D phage DNA, downstream reg... 44 3.2 2 (CU442752) Pig DNA sequence from clone CH242-52J8 on chromos... 38 3.6 4 (DX555839) GH_MBb0081K02f GH_MBb Gossypium hirsutum genomic ... 44 3.6 2 (CU469301) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.8 4 (AC132771) Rattus norvegicus clone CH230-54J13, *** SEQUENCI... 36 3.9 8 (AC186383) Pan troglodytes BAC clone CH251-720I22 from chrom... 40 3.9 4 (AJ606780) Mesobuthus gibbosus partial lys-C gene for lysozy... 34 4.0 3 (AC185970) Pan troglodytes chromosome 6 clone CH251-677J18, ... 40 4.3 4 (AM440624) Vitis vinifera contig VV78X065467.16, whole genom... 32 4.4 5 (CR936985) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 4.6 2 (AC220635) Bos taurus clone CH240-351E9, WORKING DRAFT SEQUE... 40 4.7 4 (EK060408) 1092960075558 Global-Ocean-Sampling_GS-31-01-01-1... 32 4.7 3 (CR387933) Zebrafish DNA sequence from clone DKEY-81L17 in l... 32 4.8 2 (BX936333) Zebrafish DNA sequence from clone CH211-90O16 in ... 32 4.9 2 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 42 5.2 17 (AM466931) Vitis vinifera contig VV78X112207.5, whole genome... 36 5.2 2 (AC216413) Populus trichocarpa clone POP035-J17, complete se... 32 5.3 7 (CR932968) Medicago truncatula chromosome 5 clone mth2-8e17,... 36 5.4 4 (AM486718) Vitis vinifera contig VV78X171089.11, whole genom... 40 5.7 3 (EK026368) 1092955368531 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.7 3 (CK241644) rx32a06.y1 Meloidogyne paranaensis egg SL1 pGEM M... 38 6.2 2 (AC146397) Pan troglodytes chromosome 7 clone RP43-52G7, WOR... 40 6.2 5 (CK241501) rx30d01.y1 Meloidogyne paranaensis egg SL1 pGEM M... 38 6.2 2 (BX957233) Zebrafish DNA sequence from clone DKEY-224H10 in ... 34 6.4 5 (BX169875) Danio rerio genomic clone DKEY-176J17, genomic su... 32 6.5 2 (DR392066) USDA-FP_151998 Adult Alate Aphis gossypii (WHAGA)... 34 6.5 2 (DR392518) USDA-FP_152450 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR392923) USDA-FP_152855 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR390188) USDA-FP_150008 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR390917) USDA-FP_150849 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR396509) USDA-FP_156447 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR396601) USDA-FP_156540 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR395281) USDA-FP_155216 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR393518) USDA-FP_153450 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR396026) USDA-FP_155961 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR389605) USDA-FP_149425 Adult Alate Aphis gossypii (WHAGA)... 34 6.6 2 (DR389368) USDA-FP_149188 Adult Alate Aphis gossypii (WHAGA)... 34 6.7 2 (DR390101) USDA-FP_149921 Adult Alate Aphis gossypii (WHAGA)... 34 6.7 2 (DR394614) USDA-FP_154549 Adult Alate Aphis gossypii (WHAGA)... 34 6.7 2 (BV021210) S212P60516FF11.T0 CZECHII/Ei Mus musculus STS gen... 34 6.8 2 (AC208287) Nomascus leucogenys leucogenys clone CH271-98A15,... 42 7.3 3 (AC150022) Papio anubis clone RP41-3B24, WORKING DRAFT SEQUE... 40 7.3 3 (CW397771) fsbb001f086o19k0 Sorghum methylation filtered lib... 34 7.5 2 (AM442512) Vitis vinifera contig VV78X149751.2, whole genome... 32 7.5 5 (AM438664) Vitis vinifera contig VV78X157959.20, whole genom... 34 7.5 4 (EJ789621) 1093017370646 Global-Ocean-Sampling_GS-30-02-01-1... 42 7.7 2 (ED749227) GM_WBb0114O10.r GM_WBb Glycine max genomic clone ... 42 7.9 2 (AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 7.9 9 (ED792089) GM_WBb0175M09.f GM_WBb Glycine max genomic clone ... 42 8.0 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 8.1 9 (AB284537) Polistes chinensis gene for 16S rRNA, partial seq... 38 8.1 2 (AX346287) Sequence 1358 from Patent WO0200928. 40 8.2 4 (AC166027) Oryctolagus cuniculus clone LB1-6G14, WORKING DRA... 44 8.3 5 (AC073210) Homo sapiens BAC clone RP11-460N20 from 7, comple... 40 8.3 3 (EI483643) PV_GBa0097A17.f PV_GBa Phaseolus vulgaris genomic... 30 8.6 3 (BX640463) Zebrafish DNA sequence from clone DKEY-29P10 in l... 34 8.7 6 (AL035476) Plasmodium falciparum MAL4P3. 40 9.1 11 (EJ082568) 1095460058856 Global-Ocean-Sampling_GS-26-01-01-1... 42 9.2 2 (EK336769) 1095467045065 Global-Ocean-Sampling_GS-31-01-01-1... 40 9.2 2 (EJ463967) 1095388004011 Global-Ocean-Sampling_GS-28-01-01-1... 38 9.3 2 (EJ987786) 1093023023510 Global-Ocean-Sampling_GS-30-02-01-1... 42 9.3 2 (EJ810624) 1093017487518 Global-Ocean-Sampling_GS-30-02-01-1... 42 9.3 2 (EJ799286) 1093017418110 Global-Ocean-Sampling_GS-30-02-01-1... 42 9.3 2 (EJ844125) 1093017846614 Global-Ocean-Sampling_GS-30-02-01-1... 42 9.4 2 (CR735103) Zebrafish DNA sequence from clone CH211-13L14 in ... 32 9.6 7 (AC209189) Populus trichocarpa clone POP078-I10, complete se... 38 9.7 4 (CS468863) Sequence 54 from Patent EP1748080. 36 9.7 7 (CS419340) Sequence 54 from Patent WO2006094836. 36 9.7 7 (EJ827221) 1093017566516 Global-Ocean-Sampling_GS-30-02-01-1... 42 9.9 2
>(AC117073) Dictyostelium discoideum chromosome 2 map 6045872-6061342 strain AX4, complete sequence. Length = 15470
Score = 656 bits (331), Expect(5) = 0.0 Identities = 334/335 (99%) Strand = Plus / Plus
Query: 542 tggacatggttaccaggagttgcatatgcaagtgttggtatgtttgccaatacattagtt 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4660 tggacatggttaccaggagttgcatatgcaagtgttggtatgtttgccaatacattagtt 4719
Query: 602 catgtatttatgtattactattattttagaacatcaattaatccatcagttagaatttgg 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4720 catgtatttatgtattactattattttagaacatcaattaatccatcagttagaatttgg 4779
Query: 662 tggaaatcatatcttacaagtggtcaattattccaattttcaatgtcattcgtattagca 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4780 tggaaatcatatcttacaagtggtcaattattccaattttcaatgtcattcgtattagca 4839
Query: 722 attccattcctcttacaagatatttctttaaatcaaacccctggtaaatttaatcattca 781 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 4840 attccattcctcttacaagatatttctttaaatcaaaccactggtaaatttaatcattca 4899
Query: 782 tgtaaaggttggggtgcatttggtttcacaatggtaaacaatttaatatttttaatttta 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4900 tgtaaaggttggggtgcatttggtttcacaatggtaaacaatttaatatttttaatttta 4959
Query: 842 ttcattaatttctatattcaaacatatgttaatag 876 ||||||||||||||||||||||||||||||||||| Sbjct: 4960 ttcattaatttctatattcaaacatatgttaatag 4994
Score = 377 bits (190), Expect(5) = 0.0 Identities = 192/193 (99%) Strand = Plus / Plus
Query: 137 gtcaacttcagtttctccaaattatttggacttggttccaattgattttatgatgaaatt 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3845 gtcaacttcagtttctccaaattatttggacttggttccaattgattttatgatgaaatt 3904
Query: 197 attaccatcagaatatacttttcaaagtttatttgaagtcgattacagtaaatgggattg 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3905 attaccatcagaatatacttttcaaagtttatttgaagtcgattacagtaaatgggattg 3964
Query: 257 gagtcaattaatcccatcaaaagatttcaaatttatcgagggtgttncaccattcacaaa 316 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 3965 gagtcaattaatcccatcaaaagatttcaaatttatcgagggtgttacaccattcacaaa 4024
Query: 317 taaaaatttcatc 329 ||||||||||||| Sbjct: 4025 taaaaatttcatc 4037
Score = 170 bits (86), Expect(5) = 0.0 Identities = 97/102 (95%) Strand = Plus / Plus
Query: 402 ggatggagacttggtatgatatcaggtattcataattnaattttatgngttnggccattt 461 ||||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||| Sbjct: 4270 ggatggagacttggtatgatatcaggtattcataatttaattttatgtgtttggtcattt 4329
Query: 462 gttatgngcgcaggtttatcatatgatcttttacttttattc 503 |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 4330 gttatgtgcgcaggtttatcatatgatcttttacttttattc 4371
Score = 95.6 bits (48), Expect(5) = 0.0 Identities = 50/51 (98%) Strand = Plus / Plus
Query: 87 attattataaaaagttatagatcaaaataaataaaaaatttaancagaatg 137 ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 3547 attattataaaaagttatagatcaaaataaataaaaaatttaaacagaatg 3597
Score = 40.1 bits (20), Expect(5) = 0.0 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 516 agagaattaattttcttaca 535 |||||||||||||||||||| Sbjct: 4606 agagaattaattttcttaca 4625
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 988,632,945 Number of extensions: 71628220 Number of successful extensions: 7012838 Number of sequences better than 10.0: 196 Length of query: 1019 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 995 Effective length of database: 96,409,374,237 Effective search space: 95927327365815 Effective search space used: 95927327365815 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.20 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
2 |
FC-IC (SUB) |
0 |