Contig-U16108-1
Contig ID Contig-U16108-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16108-1 (Contig-U16108-1Q) /CSM_Contig/Contig-U16108-1Q.Seq.d
CCCCCCCGCCTTCCCCTCTCCCTTATTCCCCCCCTCACCACCCCACTCCC
CCCCTTCAACCCGTCCTATCACCCCTACACCACTTAATTTGTCTTAGCTC
ACTCCTTAGCCACCCCAGGCTTTACACTTTATCCTTCCTCTCTCATATTT
TCATTACACTTCTCAACCCATCACCATCTCACACAAACACCATCTATAAT
CATACCCACACCAAGCGCACAATTAACCCTCATCAAAGCATACACAAACT
AATTACCTACCCCCCCCTCGACTTCGACCCCCGCCTCCGCTACAAACAAC
ACCACATACATCCCCCTCATCTTTAATGAATAATAATAATATATATAACA
ATATTTTATTCTCAATAATTATTTATTTTAAATTTAATATTTATATCACC
TATATTATGTATCAAAGTTGTTTAAGAAATAATGTCAAGTAGCATGCCCC
CATTCCAGTATCAGTATTACCTTCGTCCTATCTGCCCACCATTCCTATCT
CC----------AGTACAATTCCATGTTGCATTCTCATCAATGGTAAGAG
GTGCGGCAATTTTAGCGGGTGGACCATACTGGTGTGCAAAATCTAGTGTA
ATCACAGCACAATTGGATTGTATGAAAGCACCAGAACTAATTAGCATCAC
AGAATTAATTGGTGCAACTGAATTTGCAGCAACTTCATTAACAATTGACG
ATCCATCCAATTTAAAGAATAGTCAAGTTTGGTTATACTCTGGTATGAAT
GATACAGTTGTTGTACCGGGTGTAATGAGAAAATTGGTTGAATACTATTC
AAACTATGTCAATAATGATAACATTAAAACCATGTTCGATATTCAATCAG
AACATGCTTTCATCACAAACTCATTTGGTAATAATTGTACGTACTTAGGT
CCTGATTATATAAATAATTGTAATTTCAATGCACCATGGGACTTTTTATC
ACAATTTTATGGTGAATTAAATCAACCATCTTTAAATAATTTAACTGAAA
ATATTATTACAATTGATCAATCATCATTCATACCAATTGGATATACAACA
ATCACAGCTGGTTTAAATAATTTTGCATATGCATATATTCCAACTTCTTG
TAAAAATGATAAATCTTTATGTTCAATTCATGTTGCTTTTCATGGTTGTT
TACAAACTGTTGCAACAATTGGTGATAATTTTTATACAAAAACAGGTTAC
AATGAAATCGCTGAGACAAATAATATTATAATATTATATCCACAAGCATT
GGAAACTGAATTAAATCCAAAAGGTTGTTTTGATTGGTGGTCATTTACTG
GAGCTGATTATGCTTCTCAATTAGGTGTTCAAATGGGTGTTGTTAAATCT
ATGGTAATGTCTTTGTCAAATTAAATTTCTCATTTCTCAAAATAAAATCA
TAAAATCAAAAATTGTATAATTAAAATAAAAATAAAAAAAAAAACAAAAA
TAAAAAAAAAAAACAA

Gap gap included
Contig length 1456
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1889609
End point 1888449
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 6
Link to clone list U16108
List of clone(s)

est1=SSB418X,1,502
est2=SSB418F,290,428
est3=SSB418Z,503,1456
est4=VFK764Z,738,1403
est5=VFJ753Z,777,1333
est6=AFI626Z,908,1291
Translated Amino Acid sequence
tnnttyiplifne***yi*qyfilnnylf*i*ylyhlyyvsklfkk*CQVACPHSSISIT
FVLSAHHSYLXXXXVQFHVAFSSMVRGAAILAGGPYWCAKSSVITAQLDCMKAPELISIT
ELIGATEFAATSLTIDDPSNLKNSQVWLYSGMNDTVVVPGVMRKLV---

---NYVNNDNIKTMFDIQSEHAFITNSFGNNCTYLGPDYINNCNFNAPWDFLSQFYGELN
QPSLNNLTENIITIDQSSFIPIGYTTITAGLNNFAYAYIPTSCKNDKSLCSIHVAFHGCL
QTVATIGDNFYTKTGYNEIAETNNIIILYPQALETELNPKGCFDWWSFTGADYASQLGVQ
MGVVKSMVMSLSN*ishfsk*nhkiknciikikikkktkikkkn


Translated Amino Acid sequence (All Frames)
Frame A:
lqttphtspsslmnnnniynnilfsiiiyfkfniyityimyqsclrnnvk*hapipvsvl
pssylptipisxxxxynsmlhshqw*evrqf*rvdhtgvqnlv*sqhnwiv*khqn*las
qn*lvqlnlqqlh*qltihpi*rivkfgytlv*miqllyrv**enwl---

---NYVNNDNIKTMFDIQSEHAFITNSFGNNCTYLGPDYINNCNFNAPWDFLSQFYGELN
QPSLNNLTENIITIDQSSFIPIGYTTITAGLNNFAYAYIPTSCKNDKSLCSIHVAFHGCL
QTVATIGDNFYTKTGYNEIAETNNIIILYPQALETELNPKGCFDWWSFTGADYASQLGVQ
MGVVKSMVMSLSN*ishfsk*nhkiknciikikikkktkikkkn

Frame B:
ykqhhihpphl**iiiiyitifysq*lfilnlifispilcikvv*eimsssmppfqyqyy
lrpicppflspxxxstipccilingkrcgnfsgwtilvcki*cnhstiglyestrtn*hh
rinwcn*icsnfinn*rsiqfke*sslvilwye*yscctgcnekig*---

---tmsimitlkpcsifnqnmlssqthlviivrt*vlii*iivismhhgtfyhnfmvn*i
nhl*ii*lkillqlinhhsyqldiqqsqlv*iilhmhifqllvkminlyvqfmllfmvvy
kllqqlviifiqkqvtmkslrqiil*yyihkhwkln*iqkvvligghllelimlln*vfk
wvllnlw*clcqikflisqnkiikskiv*lk*k*kkkqk*kkkt

Frame C:
tnnttyiplifne***yi*qyfilnnylf*i*ylyhlyyvsklfkk*CQVACPHSSISIT
FVLSAHHSYLXXXXVQFHVAFSSMVRGAAILAGGPYWCAKSSVITAQLDCMKAPELISIT
ELIGATEFAATSLTIDDPSNLKNSQVWLYSGMNDTVVVPGVMRKLV---

---lcq***h*nhvrysirtcfhhkliw**lyvlrs*lyk*l*fqctmglfitilw*iks
tifk*fn*kyyyn*siiihtnwiynnhswfk*fciciysnfl*k**ifmfnsccfswlft
nccnnw**flyknrlq*nr*dk*yyniistsign*ikskrlf*lvviyws*lcfsircsn
gcc*iygnvfvklnfsflkiks*nqklyn*nknkkknknkkkkq

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16108-1 (Contig-U16108-1Q)
/CSM_Contig/Contig-U16108-1Q.Seq.d
(1177 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16108-1 (Contig-U16108-1Q) /CSM_Contig/Conti... 1881 0.0
Contig-U15818-1 (Contig-U15818-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U01623-1 (Contig-U01623-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U16148-1 (Contig-U16148-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U06765-1 (Contig-U06765-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U16149-1 (Contig-U16149-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U13520-1 (Contig-U13520-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U13384-1 (Contig-U13384-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U12301-1 (Contig-U12301-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U16207-1 (Contig-U16207-1Q) /CSM_Contig/Conti... 32 1.9

>Contig-U16108-1 (Contig-U16108-1Q) /CSM_Contig/Contig-U16108-1Q.Seq.d
Length = 1177

Score = 1881 bits (949), Expect = 0.0
Identities = 979/979 (100%)
Strand = Plus / Plus


Query: 120 gtatcaaagttgtttaagaaataatgtcaagtagcatgcccccattccagtatcagtatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gtatcaaagttgtttaagaaataatgtcaagtagcatgcccccattccagtatcagtatt 179


Query: 180 accttcgtcctatctgcccaccattcctatctccnnnnnnnnnnagtacaattccatgtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 accttcgtcctatctgcccaccattcctatctccnnnnnnnnnnagtacaattccatgtt 239


Query: 240 gcattctcatcaatggtaagaggtgcggcaattttagcgggtggaccatactggtgtgca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcattctcatcaatggtaagaggtgcggcaattttagcgggtggaccatactggtgtgca 299


Query: 300 aaatctagtgtaatcacagcacaattggattgtatgaaagcaccagaactaattagcatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaatctagtgtaatcacagcacaattggattgtatgaaagcaccagaactaattagcatc 359


Query: 360 acagaattaattggtgcaactgaatttgcagcaacttcattaacaattgacgatccatcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acagaattaattggtgcaactgaatttgcagcaacttcattaacaattgacgatccatcc 419


Query: 420 aatttaaagaatagtcaagtttggttatactctggtatgaatgatacagttgttgtaccg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aatttaaagaatagtcaagtttggttatactctggtatgaatgatacagttgttgtaccg 479


Query: 480 ggtgtaatgagaaaattggttgaatactattcaaactatgtcaataatgataacattaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggtgtaatgagaaaattggttgaatactattcaaactatgtcaataatgataacattaaa 539


Query: 540 accatgttcgatattcaatcagaacatgctttcatcacaaactcatttggtaataattgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 accatgttcgatattcaatcagaacatgctttcatcacaaactcatttggtaataattgt 599


Query: 600 acgtacttaggtcctgattatataaataattgtaatttcaatgcaccatgggacttttta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acgtacttaggtcctgattatataaataattgtaatttcaatgcaccatgggacttttta 659


Query: 660 tcacaattttatggtgaattaaatcaaccatctttaaataatttaactgaaaatattatt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tcacaattttatggtgaattaaatcaaccatctttaaataatttaactgaaaatattatt 719


Query: 720 acaattgatcaatcatcattcataccaattggatatacaacaatcacagctggtttaaat 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 acaattgatcaatcatcattcataccaattggatatacaacaatcacagctggtttaaat 779


Query: 780 aattttgcatatgcatatattccaacttcttgtaaaaatgataaatctttatgttcaatt 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aattttgcatatgcatatattccaacttcttgtaaaaatgataaatctttatgttcaatt 839


Query: 840 catgttgcttttcatggttgtttacaaactgttgcaacaattggtgataatttttataca 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 catgttgcttttcatggttgtttacaaactgttgcaacaattggtgataatttttataca 899


Query: 900 aaaacaggttacaatgaaatcgctgagacaaataatattataatattatatccacaagca 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 aaaacaggttacaatgaaatcgctgagacaaataatattataatattatatccacaagca 959


Query: 960 ttggaaactgaattaaatccaaaaggttgttttgattggtggtcatttactggagctgat 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 ttggaaactgaattaaatccaaaaggttgttttgattggtggtcatttactggagctgat 1019


Query: 1020 tatgcttctcaattaggtgttcaaatgggtgttgttaaatctatggtaatgtctttgtca 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 tatgcttctcaattaggtgttcaaatgggtgttgttaaatctatggtaatgtctttgtca 1079


Query: 1080 aattaaatttctcatttct 1098
|||||||||||||||||||
Sbjct: 1080 aattaaatttctcatttct 1098


Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1 ctacaaacaacaccacatacatccccctcatc 32
||||||||||||||||||||||||||||||||
Sbjct: 1 ctacaaacaacaccacatacatccccctcatc 32


Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 931 ataatattataatattat 948
||||||||||||||||||
Sbjct: 948 ataatattataatattat 931


>Contig-U15818-1 (Contig-U15818-1Q) /CSM_Contig/Contig-U15818-1Q.Seq.d
Length = 3934

Score = 40.1 bits (20), Expect = 0.008
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 930 aataatattataatattata 949
||||||||||||||||||||
Sbjct: 256 aataatattataatattata 275


Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 931 ataatattataatattat 948
||||||||||||||||||
Sbjct: 274 ataatattataatattat 257


Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 935 tattataatattata 949
|||||||||||||||
Sbjct: 278 tattataatattata 264


>Contig-U01623-1 (Contig-U01623-1Q) /CSM_Contig/Contig-U01623-1Q.Seq.d
Length = 1416

Score = 40.1 bits (20), Expect = 0.008
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 716 tattacaattgatcaatcatcatt 739
||||||||| ||||||||||||||
Sbjct: 93 tattacaatcgatcaatcatcatt 116


Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 936 attataatattatat 950
|||||||||||||||
Sbjct: 1324 attataatattatat 1338


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,969
Number of Sequences: 8402
Number of extensions: 20969
Number of successful extensions: 2268
Number of sequences better than 10.0: 222
length of query: 1177
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1161
effective length of database: 7,941,110
effective search space: 9219628710
effective search space used: 9219628710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.13
Homology vs DNA
Query= Contig-U16108-1 (Contig-U16108-1Q) /CSM_Contig/Contig-U16108-1Q.Seq.d
(1177 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433710) Dictyostelium discoideum cDNA clone:ddv22p15, 3' ... 1225 0.0 1
(BJ433046) Dictyostelium discoideum cDNA clone:ddv20j13, 3' ... 1098 0.0 1
(AU037093) Dictyostelium discoideum slug cDNA, clone SSB418. 789 0.0 2
(BJ344047) Dictyostelium discoideum cDNA clone:dda18c08, 3' ... 412 e-110 1
(AM054373) Isotricha prostoma EST, clone Iso_F05. 38 0.70 2
(X74548) G.sulphuraria plastid apcE, apcA and apcB genes. 48 0.75 1
(CU928919) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.75 1
(CU856666) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.75 1
(ER597791) 1093016229507 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.75 1
(AQ333749) HS_5008_B1_H01_SP6E RPCI11 Human Male BAC Library... 48 0.75 1
(CG815840) SOYAQ65TV LargeInsertSoybeanGenLib Glycine max ge... 48 0.75 1
(CP000393) Trichodesmium erythraeum IMS101, complete genome. 48 0.75 1
(BX649493) Zebrafish DNA sequence from clone CH211-226H23 in... 40 1.8 4
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 2.8 14
(AC198161) MACACA MULATTA BAC clone CH250-178F7 from chromos... 46 3.0 1
(AC150135) Gallus gallus clone WAG-46E1, WORKING DRAFT SEQUE... 46 3.0 1
(AC150073) Gallus gallus clone CH261-92I5, WORKING DRAFT SEQ... 46 3.0 1
(AC150070) Gallus gallus clone CH261-85F10, WORKING DRAFT SE... 46 3.0 1
(EK071466) 1092960196089 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.0 1
(DU100434) JBnY021J14F Brassica napus BAC library JBnY Brass... 46 3.0 1
(CL474981) SAIL_22_E10.v1 SAIL Collection Arabidopsis thalia... 46 3.0 1
(CP000485) Bacillus thuringiensis str. Al Hakam, complete ge... 46 3.0 1
(CP000001) Bacillus cereus E33L, complete genome. 46 3.0 1
(AE017355) Bacillus thuringiensis serovar konkukian str. 97-... 46 3.0 1
(AE016877) Bacillus cereus ATCC 14579, complete genome. 46 3.0 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 3.1 12
(DE031716) Branchiostoma floridae DNA, clone: CH302-049F07.F... 32 3.2 3
(CV847559) ID0AEE3AG03RM1 ID0AEE Acyrthosiphon pisum cDNA cl... 40 3.2 2
(BX511180) Zebrafish DNA sequence from clone CH211-221H1 in ... 42 5.0 5
(CT737207) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 5.5 2
(CR936499) Zebrafish DNA sequence from clone CH211-130N3 in ... 32 5.8 2
(EX607809) 255359638 Pea aphid whole body normalized full le... 40 6.5 2
(AM482775) Vitis vinifera contig VV78X100209.9, whole genome... 34 6.5 2
(CU952518) Brassica napus GSS, clone JBnB144N04, end read, p... 36 6.6 2
(AM441137) Vitis vinifera contig VV78X146107.6, whole genome... 34 6.7 2
(AC218347) Bos taurus clone CH240-286C8, WORKING DRAFT SEQUE... 42 8.8 6
(CR936247) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 9.0 5
(CR509123) mth4-7L2RM1 BAC end, cultivar Jemalong A17 of Med... 28 9.7 4

>(BJ433710) Dictyostelium discoideum cDNA clone:ddv22p15, 3' end,
single read.
Length = 666

Score = 1225 bits (618), Expect = 0.0
Identities = 618/618 (100%)
Strand = Plus / Minus


Query: 459 aatgatacagttgttgtaccgggtgtaatgagaaaattggttgaatactattcaaactat 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aatgatacagttgttgtaccgggtgtaatgagaaaattggttgaatactattcaaactat 607


Query: 519 gtcaataatgataacattaaaaccatgttcgatattcaatcagaacatgctttcatcaca 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtcaataatgataacattaaaaccatgttcgatattcaatcagaacatgctttcatcaca 547


Query: 579 aactcatttggtaataattgtacgtacttaggtcctgattatataaataattgtaatttc 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aactcatttggtaataattgtacgtacttaggtcctgattatataaataattgtaatttc 487


Query: 639 aatgcaccatgggactttttatcacaattttatggtgaattaaatcaaccatctttaaat 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aatgcaccatgggactttttatcacaattttatggtgaattaaatcaaccatctttaaat 427


Query: 699 aatttaactgaaaatattattacaattgatcaatcatcattcataccaattggatataca 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aatttaactgaaaatattattacaattgatcaatcatcattcataccaattggatataca 367


Query: 759 acaatcacagctggtttaaataattttgcatatgcatatattccaacttcttgtaaaaat 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acaatcacagctggtttaaataattttgcatatgcatatattccaacttcttgtaaaaat 307


Query: 819 gataaatctttatgttcaattcatgttgcttttcatggttgtttacaaactgttgcaaca 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gataaatctttatgttcaattcatgttgcttttcatggttgtttacaaactgttgcaaca 247


Query: 879 attggtgataatttttatacaaaaacaggttacaatgaaatcgctgagacaaataatatt 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attggtgataatttttatacaaaaacaggttacaatgaaatcgctgagacaaataatatt 187


Query: 939 ataatattatatccacaagcattggaaactgaattaaatccaaaaggttgttttgattgg 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ataatattatatccacaagcattggaaactgaattaaatccaaaaggttgttttgattgg 127


Query: 999 tggtcatttactggagctgattatgcttctcaattaggtgttcaaatgggtgttgttaaa 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tggtcatttactggagctgattatgcttctcaattaggtgttcaaatgggtgttgttaaa 67


Query: 1059 tctatggtaatgtctttg 1076
||||||||||||||||||
Sbjct: 66 tctatggtaatgtctttg 49

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,173,607,721
Number of extensions: 68977000
Number of successful extensions: 5855584
Number of sequences better than 10.0: 39
Length of query: 1177
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1153
Effective length of database: 96,409,374,237
Effective search space: 111160008495261
Effective search space used: 111160008495261
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.20
Homology vs Protein
Query= Contig-U16108-1 (Contig-U16108-1Q) /CSM_Contig/Contig-U16108-1Q.Seq.d
(1177 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AB015309_1(AB015309|pid:none) Acidovorax sp. TP4 gene for PHB de... 207 6e-52
CP001154_470(CP001154|pid:none) Laribacter hongkongensis HLHK9, ... 195 3e-48
CP000388_1962(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 179 2e-43
CP001504_912(CP001504|pid:none) Burkholderia glumae BGR1 chromos... 179 2e-43
CP001103_2241(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 176 1e-42
BX842653_104(BX842653|pid:none) Bdellovibrio bacteriovorus compl... 175 2e-42
AE016825_729(AE016825|pid:none) Chromobacterium violaceum ATCC 1... 174 4e-42
CP001026_1662(CP001026|pid:none) Burkholderia ambifaria MC40-6 c... 170 8e-41
CP000441_1038(CP000441|pid:none) Burkholderia ambifaria AMMD chr... 169 1e-40
CP001157_3352(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 167 9e-40
AE016825_718(AE016825|pid:none) Chromobacterium violaceum ATCC 1... 164 7e-39
CP000086_2264(CP000086|pid:none) Burkholderia thailandensis E264... 163 1e-38
CP000124_2252(CP000124|pid:none) Burkholderia pseudomallei 1710b... 163 1e-38
BX571965_1600(BX571965|pid:none) Burkholderia pseudomallei strai... 163 1e-38
CU633749_2162(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 152 2e-35
AB000508_1(AB000508|pid:none) Comamonas testosteroni DNA for pol... 145 3e-33
U16275_1(U16275|pid:none) Comamonas sp. poly(hydroxyalkanoate) d... 143 1e-32
CP000943_637(CP000943|pid:none) Methylobacterium sp. 4-46, compl... 141 4e-32
CP001392_2031(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 141 5e-32
CP000534_13(CP000534|pid:none) Polaromonas naphthalenivorans CJ2... 138 3e-31
AY061637_1(AY061637|pid:none) Rhodospirillum rubrum poly(3-hydro... 136 1e-30
CP000943_5276(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 79 4e-13
CP000875_2756(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 46 0.002
AE014188_214(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 45 0.005
U68039_1(U68039|pid:none) Pseudomonas lemoignei polyhydroxyalkan... 42 0.032
AE007293_9(AE007293|pid:none) Sinorhizobium meliloti 1021 plasmi... 42 0.055
AE006469_1075(AE006469|pid:none) Sinorhizobium meliloti 1021 pla... 42 0.055
CP001016_3553(CP001016|pid:none) Beijerinckia indica subsp. indi... 41 0.072
CP000447_3146(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 40 0.12
CP000781_3314(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 40 0.16
CP001280_1195(CP001280|pid:none) Methylocella silvestris BL2, co... 39 0.27
AB258388_1(AB258388|pid:none) Bacillus megaterium phaZ gene for ... 39 0.27
BA000040_4997(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 39 0.47
(P52090) RecName: Full=Poly(3-hydroxyalkanoate) depolymerase C; ... 39 0.47
CP000319_3666(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 39 0.47
CP001029_1454(CP001029|pid:none) Methylobacterium populi BJ001, ... 39 0.47
CP001157_3233(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 38 0.61
BX572594_245(BX572594|pid:none) Rhodopseudomonas palustris CGA00... 38 0.80
CP001281_505(CP001281|pid:none) Thauera sp. MZ1T, complete genome. 38 0.80
CP001111_2055(CP001111|pid:none) Stenotrophomonas maltophilia R5... 37 1.0
CP001349_6753(CP001349|pid:none) Methylobacterium nodulans ORS 2... 37 1.0
CP001002_246(CP001002|pid:none) Methylobacterium radiotolerans J... 36 2.3
CR555306_1632(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 36 3.0
CP000743_1052(CP000743|pid:none) Methanococcus aeolicus Nankai-3... 36 3.0
AB189671_2(AB189671|pid:none) Clostridium perfringens plasmid pB... 36 3.0
CP000738_2960(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 36 3.0
AM910987_172(AM910987|pid:none) Plasmodium knowlesi strain H chr... 36 3.0
CP000964_1141(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 36 3.0
AE008922_1418(AE008922|pid:none) Xanthomonas campestris pv. camp... 35 4.0
AM920689_2890(AM920689|pid:none) Xanthomonas campestris pv. camp... 35 4.0
CP000320_173(CP000320|pid:none) Nitrobacter hamburgensis X14 pla... 35 4.0
CP000943_5919(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 35 4.0
DQ183188_1(DQ183188|pid:none) Brugia malayi convertase 2 precurs... 35 4.0
AP006725_3817(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 35 5.2
CU633438_525(CU633438|pid:none) Podospora anserina genomic DNA c... 35 5.2
AM999887_38(AM999887|pid:none) Wolbachia endosymbiont of Culex q... 35 5.2
CP000943_5408(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 35 5.2
(Q54KX0) RecName: Full=GATA zinc finger domain-containing protei... 35 5.2
CP000647_2915(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 35 5.2
AB167976_1(AB167976|pid:none) Aspergillus oryzae AoaxeA gene for... 35 5.2
CR936503_267(CR936503|pid:none) Lactobacillus sakei strain 23K c... 35 6.8
EF147170_1(EF147170|pid:none) Populus trichocarpa clone WS01228_... 34 8.8
(Q9GJT2) RecName: Full=S-formylglutathione hydrolase; S... 34 8.8

>AB015309_1(AB015309|pid:none) Acidovorax sp. TP4 gene for PHB
depolymerase, complete cds.
Length = 491

Score = 207 bits (527), Expect = 6e-52
Identities = 112/286 (39%), Positives = 163/286 (56%), Gaps = 5/286 (1%)
Frame = +3

Query: 225 VQFHVAFSS-MVRGAAILAGGPYWCAKSSVITAQLDCMKAPELISITELIGATEFAATSL 401
VQ HVA+S+ +G ++AGGP++CA+ SV+ A CM +P I + L+ T A
Sbjct: 52 VQLHVAYSATFAKGVGVVAGGPFYCAEGSVVNATGRCMASPTGIPTSTLVNTTNTWAGQG 111

Query: 402 TIDDPSNLKNSQVWLYSGMNDTVVVPGVMRKLVEYYSNYVNNDNIKTMFDIQSEHAFITN 581
ID +NL+NS+V+L+SG D+VV GVM L YY+++V N+ DI SEHA +T+
Sbjct: 112 VIDPVANLQNSKVYLFSGTLDSVVKTGVMDALRTYYNSFVPAANVVYKKDIASEHAMVTD 171

Query: 582 SFGNNCTYLGPDYINNCNFNAPWDFLSQFYGELNQPSLNNLT---ENIITIDQSSFIPIG 752
+GN C+ G YI++CNF+ L YG LN + NN T N I +QS FI
Sbjct: 172 DYGNGCSTKGAPYISDCNFDLAGAMLQHLYGTLN--ARNNATLPSGNFIEFNQSEFIS-- 227

Query: 753 YTTITAGLNNFAYAYIPTSCK-NDKSLCSIHVAFHGCLQTVATIGDNFYTKTGYNEIAET 929
G+ +AY+P +C+ + C +HV HGC Q V + + TGYN A++
Sbjct: 228 ----NHGMATTGWAYVPQACQAGGTATCKLHVVLHGCKQNVNDVQQQYVRNTGYNRWADS 283

Query: 930 NNIIILYPQALETELNPKGCFDWWSFTGADYASQLGVQMGVVKSMV 1067
NNI++LYPQ N C+DWW + A+Y+ + G QM +K+MV
Sbjct: 284 NNIVMLYPQTSLAATN--SCWDWWGYDSANYSKKSGPQMAAIKAMV 327

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,758,272,461
Number of extensions: 33564843
Number of successful extensions: 79683
Number of sequences better than 10.0: 63
Number of HSP's gapped: 79549
Number of HSP's successfully gapped: 65
Length of query: 392
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 261
Effective length of database: 627,191,635
Effective search space: 163697016735
Effective search space used: 163697016735
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.94 gvh: 0.59 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: extracellular, including cell wall
28.0 %: nuclear
20.0 %: mitochondrial
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U16108-1 is exc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0