Contig-U03236-1
Contig ID Contig-U03236-1
Contig update 2001. 8.29
Contig sequence
>Contig-U03236-1 (Contig-U03236-1Q) /CSM_Contig/Contig-U03236-1Q.Seq.d
ATTAAAAAAAAAGAAAAAAATAAATATTCATTCATTAAAATCATAATAAT
AATATAAAAATTATATAATGACAGAGGTTGAAGAAAACTTTTTTAAATCA
GTTGATTTACATAAAGATTTTTCAGAAGATTTAAATAGAGTTAAAAATTT
TAAAGAAAGAGCAATTAAAAATAATGCAAAGGTTATTTTAATTACATCAG
GTGGTACGATTGTACCATTTGAAAAGAATATGGTTAGATTTTTAGATAAT
TTTAGTGGTGGTAATCGTGGTGCAACAACAGCAGAATATTTTTTACAAAA
AGGATATTATGTATTATTTTTATCAAGAAAGAATTCCCTTCAACCGTTTG
TAAAGAATTTAATGTTACATGAGACCAACTTCTTTACATATTTAGGTATA
AATGAAAATGATGGTGGTAATGGTAGAAATAATAATAATAATAATAATGA
AAATGAATTTAAAAATGATAATGATACAATTTTATCACCGTCGTTGGATG
TTATAAAGAATCATGTTTGTATTGGTGAAGATTACTATTATGAAGTTTCA
AAAGAGTATTTAAAATGGAAGAAATTCTGTGAAAATGGTAGTTTGGAGAG
AGTTAATTTCGAAACTGTTGGTGAATATTTATATTTATTAAAAAACATTT
CAACTGAGTTATCAATTTTAAAGAGTAATTTAATAGTGTATGCAGCGGCT
GCAGTATCAGATTTCTATATACCATTGGACATGATGGCACAACATAAAAT
TCAATCAAAGAATCAGTCATTGACAATCACATTGGATCCAGTGCCGAAAA
TGATTAAATTCTTAGTAGACAATTGGTGTCCAAATTCATACATTGTCACA
TTCAAATTAGAAACTGATCAAACCATTTTAAATGAAAAATGTTTAGCATC
ATTATCAAATTATAATCATCAATTAGTAATTGGTAATCTATTATCAGATT
ACAGAAATTGGGTAATATTTCATCAACAACAATCTAAGCCAATAATTGTT
AAAAGAGAACTAACACAATTCCAAATTCAACAACAACAAAAATTATCACC
ATCATCTTCTTATTCTTTAAAAAATGATAATCATGATCATCATCATGATC
ATCATCATGATCATCATGACCATGATCATCAACATCAACATAAACAACCA
ATTGGTGTTGATCATGCCAATTGAATATAATATTGGTGAAAAATTAATTG
AATTACA

Gap no gap
Contig length 1207
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5995580
End point 5996789
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U03236
List of clone(s)

est1=CFG792E,1,1168
est2=VFH470F,22,544
est3=CFF861Z,430,1139
est4=SFH322Z,494,1139
est5=VFH470Z,797,1208
Translated Amino Acid sequence
lkkkkkinihslks***YKNYIMTEVEENFFKSVDLHKDFSEDLNRVKNFKERAIKNNAK
VILITSGGTIVPFEKNMVRFLDNFSGGNRGATTAEYFLQKGYYVLFLSRKNSLQPFVKNL
MLHETNFFTYLGINENDGGNGRNNNNNNNENEFKNDNDTILSPSLDVIKNHVCIGEDYYY
EVSKEYLKWKKFCENGSLERVNFETVGEYLYLLKNISTELSILKSNLIVYAAAAVSDFYI
PLDMMAQHKIQSKNQSLTITLDPVPKMIKFLVDNWCPNSYIVTFKLETDQTILNEKCLAS
LSNYNHQLVIGNLLSDYRNWVIFHQQQSKPIIVKRELTQFQIQQQQKLSPSSSYSLKNDN
HDHHHDHHHDHHDHDHQHQHKQPIGVDHAN*i*yw*kin*it


Translated Amino Acid sequence (All Frames)
Frame A:
ikkkeknkysfikiiiii*klyndrg*rklf*is*ft*rffrrfk*s*kf*rksn*k*ck
gyfnyirwydcti*keyg*ifr*f*ww*swcnnsrifftkrilciifikkefpstvckef
nvt*dqllyifryk*k*ww*w*k*******k*i*k***ynfitvvgcykesclyw*rlll
*sfkrvfkmeeil*kw*fges*frncw*ififikkhfn*vinfke*fnsvcsgcsirfly
tighdgtt*nsikesvidnhigssaend*ilsrqlvskfihchiqirn*snhfk*kmfsi
iikl*ssisnw*siirlqklgnisstti*annc*krtntipnstttkiitiiflffkk**
s*sss*sss*ss*p*sstst*ttnwc*scqlniilvkn*lny


Frame B:
lkkkkkinihslks***YKNYIMTEVEENFFKSVDLHKDFSEDLNRVKNFKERAIKNNAK
VILITSGGTIVPFEKNMVRFLDNFSGGNRGATTAEYFLQKGYYVLFLSRKNSLQPFVKNL
MLHETNFFTYLGINENDGGNGRNNNNNNNENEFKNDNDTILSPSLDVIKNHVCIGEDYYY
EVSKEYLKWKKFCENGSLERVNFETVGEYLYLLKNISTELSILKSNLIVYAAAAVSDFYI
PLDMMAQHKIQSKNQSLTITLDPVPKMIKFLVDNWCPNSYIVTFKLETDQTILNEKCLAS
LSNYNHQLVIGNLLSDYRNWVIFHQQQSKPIIVKRELTQFQIQQQQKLSPSSSYSLKNDN
HDHHHDHHHDHHDHDHQHQHKQPIGVDHAN*i*yw*kin*it


Frame C:
*kkrkk*ifih*nhnnnikii**qrlkktflnqliyikifqki*ielkilkkeqlkimqr
lf*lhqvvrlyhlkriwldf*iilvvvivvqqqqnifykkdimyyfyqeripfnrl*ri*
cymrptslhi*v*mkmmvvmveiiiiiimkmnlkmimiqfyhrrwml*rimfvlvkitim
kfqksi*ngrnsvkmvvwreliskllvniyiy*ktfqlsyqf*rvi**cmqrlqyqisiy
hwt*whnikfnqrish*qshwiqcrk*lns**tigvqihtlshsn*klikpf*mknv*hh
yqiiiin**lviyyqiteig*yfinnnlsq*llken*hnskfnnnknyhhhllil*kmii
miiimiiimiimtmiinininnqlvlimpieynigekliel


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03236-1 (Contig-U03236-1Q)
/CSM_Contig/Contig-U03236-1Q.Seq.d
(1207 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03236-1 (Contig-U03236-1Q) /CSM_Contig/Conti... 1249 0.0
Contig-U12160-1 (Contig-U12160-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U02347-1 (Contig-U02347-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U00425-1 (Contig-U00425-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U10908-1 (Contig-U10908-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U08738-1 (Contig-U08738-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U04028-1 (Contig-U04028-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U14524-1 (Contig-U14524-1Q) /CSM_Contig/Conti... 38 0.022

>Contig-U03236-1 (Contig-U03236-1Q) /CSM_Contig/Contig-U03236-1Q.Seq.d
Length = 1207

Score = 1249 bits (630), Expect = 0.0
Identities = 630/630 (100%)
Strand = Plus / Plus


Query: 449 gaaaatgaatttaaaaatgataatgatacaattttatcaccgtcgttggatgttataaag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaaaatgaatttaaaaatgataatgatacaattttatcaccgtcgttggatgttataaag 508


Query: 509 aatcatgtttgtattggtgaagattactattatgaagtttcaaaagagtatttaaaatgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aatcatgtttgtattggtgaagattactattatgaagtttcaaaagagtatttaaaatgg 568


Query: 569 aagaaattctgtgaaaatggtagtttggagagagttaatttcgaaactgttggtgaatat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagaaattctgtgaaaatggtagtttggagagagttaatttcgaaactgttggtgaatat 628


Query: 629 ttatatttattaaaaaacatttcaactgagttatcaattttaaagagtaatttaatagtg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttatatttattaaaaaacatttcaactgagttatcaattttaaagagtaatttaatagtg 688


Query: 689 tatgcagcggctgcagtatcagatttctatataccattggacatgatggcacaacataaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tatgcagcggctgcagtatcagatttctatataccattggacatgatggcacaacataaa 748


Query: 749 attcaatcaaagaatcagtcattgacaatcacattggatccagtgccgaaaatgattaaa 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 attcaatcaaagaatcagtcattgacaatcacattggatccagtgccgaaaatgattaaa 808


Query: 809 ttcttagtagacaattggtgtccaaattcatacattgtcacattcaaattagaaactgat 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttcttagtagacaattggtgtccaaattcatacattgtcacattcaaattagaaactgat 868


Query: 869 caaaccattttaaatgaaaaatgtttagcatcattatcaaattataatcatcaattagta 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 caaaccattttaaatgaaaaatgtttagcatcattatcaaattataatcatcaattagta 928


Query: 929 attggtaatctattatcagattacagaaattgggtaatatttcatcaacaacaatctaag 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 attggtaatctattatcagattacagaaattgggtaatatttcatcaacaacaatctaag 988


Query: 989 ccaataattgttaaaagagaactaacacaattccaaattcaacaacaacaaaaattatca 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 ccaataattgttaaaagagaactaacacaattccaaattcaacaacaacaaaaattatca 1048


Query: 1049 ccatcatcttcttattctttaaaaaatgat 1078
||||||||||||||||||||||||||||||
Sbjct: 1049 ccatcatcttcttattctttaaaaaatgat 1078


Score = 710 bits (358), Expect = 0.0
Identities = 358/358 (100%)
Strand = Plus / Plus


Query: 70 gacagaggttgaagaaaacttttttaaatcagttgatttacataaagatttttcagaaga 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gacagaggttgaagaaaacttttttaaatcagttgatttacataaagatttttcagaaga 129


Query: 130 tttaaatagagttaaaaattttaaagaaagagcaattaaaaataatgcaaaggttatttt 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tttaaatagagttaaaaattttaaagaaagagcaattaaaaataatgcaaaggttatttt 189


Query: 190 aattacatcaggtggtacgattgtaccatttgaaaagaatatggttagatttttagataa 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aattacatcaggtggtacgattgtaccatttgaaaagaatatggttagatttttagataa 249


Query: 250 ttttagtggtggtaatcgtggtgcaacaacagcagaatattttttacaaaaaggatatta 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttttagtggtggtaatcgtggtgcaacaacagcagaatattttttacaaaaaggatatta 309


Query: 310 tgtattatttttatcaagaaagaattcccttcaaccgtttgtaaagaatttaatgttaca 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgtattatttttatcaagaaagaattcccttcaaccgtttgtaaagaatttaatgttaca 369


Query: 370 tgagaccaacttctttacatatttaggtataaatgaaaatgatggtggtaatggtaga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgagaccaacttctttacatatttaggtataaatgaaaatgatggtggtaatggtaga 427


Score = 139 bits (70), Expect = 8e-33
Identities = 70/70 (100%)
Strand = Plus / Plus


Query: 1138 acataaacaaccaattggtgttgatcatgccaattgaatataatattggtgaaaaattaa 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 acataaacaaccaattggtgttgatcatgccaattgaatataatattggtgaaaaattaa 1197


Query: 1198 ttgaattaca 1207
||||||||||
Sbjct: 1198 ttgaattaca 1207


>Contig-U12160-1 (Contig-U12160-1Q) /CSM_Contig/Contig-U12160-1Q.Seq.d
Length = 2311

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1012 aacacaattccaaattcaacaacaa 1036
||||||||||||||| |||||||||
Sbjct: 812 aacacaattccaaatgcaacaacaa 836


>Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Contig-U09432-1Q.Seq.d
Length = 1003

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1028 caacaacaacaaaaattatca 1048
|||||||||||||||||||||
Sbjct: 333 caacaacaacaaaaattatca 353


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,052
Number of Sequences: 6905
Number of extensions: 34052
Number of successful extensions: 4478
Number of sequences better than 10.0: 594
length of query: 1207
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1191
effective length of database: 5,564,391
effective search space: 6627189681
effective search space used: 6627189681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.28
Homology vs DNA
Query= Contig-U03236-1 (Contig-U03236-1Q) /CSM_Contig/Contig-U03236-1Q.Seq.d
(1207 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ372441) Dictyostelium discoideum cDNA clone:ddc12j16, 3' ... 1195 0.0 1
(BJ400867) Dictyostelium discoideum cDNA clone:dds15l05, 3' ... 1162 0.0 1
(BJ372897) Dictyostelium discoideum cDNA clone:ddc14h23, 3' ... 1126 0.0 1
(BJ359460) Dictyostelium discoideum cDNA clone:ddc14h23, 5' ... 702 0.0 2
(BJ413463) Dictyostelium discoideum cDNA clone:ddv15l18, 5' ... 690 0.0 2
(BJ431810) Dictyostelium discoideum cDNA clone:ddv15l18, 3' ... 561 0.0 2
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 74 1e-08 1
(AR545780) Sequence 911 from patent US 6747137. 68 3e-08 2
(AE017308) Mycoplasma mobile 163K complete genome. 34 5e-07 22
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 5e-05 14
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 36 1e-04 14
(FC817977) Sr_pAMT7_010i07_T7 S. ratti mixed stage pAMP Stro... 36 0.003 3
(CZ539892) SRAA-aad28d12.g1 Strongyloides ratti whole genome... 36 0.003 3
(AC024872) Caenorhabditis elegans clone Y76B12C, complete se... 42 0.003 7
(AC024211) Caenorhabditis elegans cosmid Y76B12C, complete s... 42 0.003 7
(AC233660) Medicago truncatula chromosome 1, pooled multiple... 42 0.005 9
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.006 19
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 0.018 10
(FC812344) Sr_pASP6_010i07_SP6 S. ratti mixed stage pAMP Str... 34 0.032 3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 0.033 17
(CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.036 18
(CP000932) Campylobacter lari RM2100, complete genome. 32 0.046 21
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.048 16
(CU571041) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.051 1
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet... 38 0.065 18
(EJ785412) 1093017311874 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.066 2
(AC144999) Pan troglodytes clone CH251-535N14, WORKING DRAFT... 44 0.068 8
(AP005272) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 42 0.069 5
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 32 0.079 13
(CP000439) Francisella tularensis subsp. novicida U112, comp... 38 0.083 20
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 0.084 13
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 34 0.086 18
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 32 0.10 18
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 0.13 9
(EK150271) 1095456048132 Global-Ocean-Sampling_GS-31-01-01-1... 28 0.14 3
(AJ010592) Guillardia theta DNA for complete sequence of nuc... 36 0.14 9
(AC190312) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 36 0.16 6
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 32 0.20 12
(AC225736) Saimiri boliviensis boliviensis clone CH254-15A4,... 50 0.20 1
(AC209494) Saimiri boliviensis boliviensis clone CH254-52G1,... 50 0.20 1
(AC208765) Saimiri boliviensis boliviensis clone CH254-381M1... 50 0.20 1
(EJ857577) 1093017952415 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.20 1
(CE144532) tigr-gss-dog-17000371274205 Dog Library Canis lup... 50 0.20 1
(CP000013) Borrelia garinii PBi, complete genome. 38 0.23 16
(AC091921) Homo sapiens chromosome 5 clone RP11-256N5, compl... 40 0.23 6
(EK511060) 1095515479531 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.27 2
(AX344552) Sequence 3 from Patent WO0200932. 36 0.29 9
(EF621724) Papilio xuthus mitochondrion, partial genome. 34 0.30 6
(DD010735) Diagnosis of known genetic Parameters within the ... 36 0.37 12
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 40 0.41 20
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 38 0.43 21
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 0.45 16
(BX511228) Zebrafish DNA sequence from clone DKEY-174F1 in l... 36 0.45 6
(CU012060) M.truncatula DNA sequence from clone MTH2-62K13 o... 36 0.47 9
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 0.50 14
(AC079954) Homo sapiens 12 BAC RP11-179A1 (Roswell Park Canc... 42 0.50 4
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 36 0.52 11
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 38 0.57 21
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge... 32 0.60 20
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 34 0.61 21
(AC013571) Homo sapiens clone RP11-2F3, WORKING DRAFT SEQUEN... 40 0.61 4
(AX345389) Sequence 460 from Patent WO0200928. 36 0.71 3
(AM469036) Vitis vinifera contig VV78X149675.18, whole genom... 38 0.79 3
(AP010318) Lotus japonicus genomic DNA, chromosome 6, clone:... 48 0.80 1
(EK375830) 1095469439146 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.80 1
(EJ471258) 1095403412958 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.80 1
(BM169435) EST571958 PyBS Plasmodium yoelii yoelii cDNA clon... 48 0.80 1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 48 0.80 1
(CP000742) Methanococcus vannielii SB, complete genome. 38 0.89 20
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 0.89 18
(CU151881) Zebrafish DNA sequence from clone CH211-161G17 in... 44 0.91 4
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.95 10
(DU384033) 1098313098846 CHORI-243 Ovis aries genomic clone ... 40 0.96 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 1.0 17
(AC150938) Bos taurus clone CH240-38N12, WORKING DRAFT SEQUE... 34 1.1 7
(AC225518) Medicago truncatula clone mth2-43j2, WORKING DRAF... 40 1.1 8
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 1.3 16
(AC025348) Homo sapiens chromosome 6 clone RP11-139N14 map 6... 34 1.4 8
(AQ580323) T135950b shotgun sub-library of BAC clone 67A02 M... 36 1.4 2
(AC107363) Rattus norvegicus clone CH230-231L15, *** SEQUENC... 36 1.4 8
(EA102634) Sequence 17 from patent US 7195870. 34 1.4 3
(AX323537) Sequence 25 from Patent WO0192565. 34 1.4 3
(AX277854) Sequence 17 from Patent WO0177375. 34 1.4 3
(GM995885) Sequence 25 from Patent EP2014776. 34 1.4 3
(AC232037) Solanum tuberosum strain Diploid genotype RH89-03... 34 1.4 8
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 1.4 13
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 1.5 12
(AC181490) Strongylocentrotus purpuratus clone R3-52B05, WOR... 36 1.6 6
(AE017263) Mesoplasma florum L1 complete genome. 32 1.6 19
(AC106794) Homo sapiens chromosome 5 clone RP11-419C19, comp... 38 1.6 8
(AC074051) Homo sapiens chromosome 16 clone RP11-382N13, com... 36 1.6 2
(AC068001) Homo sapiens chromosome 16 clone RP11-303C4 map 1... 36 1.6 2
(AC225461) Medicago truncatula clone mth2-167m23, WORKING DR... 32 1.6 2
(CU928864) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.7 9
(ER523357) 1093015607071 Global-Ocean-Sampling_GS-35-01-01-1... 36 1.7 3
(AC146141) Pan troglodytes BAC clone RP43-3A23 from chromoso... 36 1.8 7
(AC113414) Homo sapiens chromosome 5 clone RP11-541P9, compl... 40 1.8 4
(AL136219) Human DNA sequence from clone RP11-149B7 on chrom... 38 1.9 4
(BX548250) Zebrafish DNA sequence from clone DKEYP-104H9 in ... 38 1.9 6
(AC169060) Bos taurus clone CH240-199J1, WORKING DRAFT SEQUE... 36 2.0 8
(X95275) Plasmodium falciparum complete gene map of plastid-... 38 2.0 4
(EL537439) EST_omor_rgc_1392 omorrgc mixed_tissue Osmerus mo... 44 2.0 2
(FH073900) CHO_OF3683xa18f1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 2.1 2
(AC153002) Medicago truncatula chromosome 6 clone mth2-95m8,... 36 2.1 5
(FI314731) AdH1162-CPY2-I22TF AdH1 Arachis duranensis genomi... 34 2.2 2
(BD452794) Diagnosis of Diseases Associated with tumor suppr... 38 2.2 4
(AX251273) Sequence 241 from Patent WO0168912. 38 2.2 4
(AL034557) Plasmodium falciparum MAL4P1. 34 2.2 12
(CR504012) mth2-182G15FM1 BAC end, cultivar Jemalong A17 of ... 32 2.2 2
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 32 2.2 14
(DA121423) Homo sapiens cDNA clone BRACE3042540, 5' end, mRN... 40 2.2 2
(CU467875) Zebrafish DNA sequence from clone CH73-60L17 in l... 38 2.3 6
(DD333432) A method of testing a sensitivity of tumor cells ... 42 2.3 5
(AL121883) Human DNA sequence from clone RP4-545K15 on chrom... 42 2.3 5
(AZ383796) 1M0141O01R Mouse 10kb plasmid UUGC1M library Mus ... 38 2.4 2
(AL627074) Mouse DNA sequence from clone RP23-465A17 on chro... 36 2.4 6
(CU467021) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.4 8
(AC006420) Arabidopsis thaliana chromosome 2 clone T12H3 map... 36 2.6 7
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 2.7 9
(AC171690) Bos taurus clone CH240-142C11, *** SEQUENCING IN ... 36 2.7 3
(AU052347) Dictyostelium discoideum slug cDNA, clone SLD175. 32 2.9 3
(FG799048) G1148P315RI12.T0 Anolis carolinensis pooled norma... 40 3.0 2
(AU053300) Dictyostelium discoideum slug cDNA, clone SLI345. 32 3.0 3
(CP000395) Borrelia afzelii PKo, complete genome. 38 3.1 20
(BX537272) Zebrafish DNA sequence from clone DKEY-25E12 in l... 32 3.1 10
(AC166843) Bos taurus clone CH240-188F13, WORKING DRAFT SEQU... 38 3.1 6
(AC221991) Bos taurus clone CH240-375A1, WORKING DRAFT SEQUE... 34 3.1 9
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 3.1 11
(FI280141) AdH1001-CPY2-H16TR AdH1 Arachis duranensis genomi... 36 3.1 2
(EF450246) Acris crepitans blanchardi clone Acr-36 microsate... 46 3.1 1
(AL627070) Mouse DNA sequence from clone RP23-353E13 on chro... 46 3.1 1
(FM956649) Nilaparvata lugens mRNA for polynucleotide kinase... 46 3.1 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 46 3.1 1
(AC157067) Bos taurus clone CH240-64I9, WORKING DRAFT SEQUEN... 46 3.1 1
(AC123143) Rattus norvegicus clone CH230-247B24, *** SEQUENC... 46 3.1 1
(AC120462) Rattus norvegicus clone CH230-423F23, *** SEQUENC... 46 3.1 1
(AC117841) Rattus norvegicus clone CH230-360J6, *** SEQUENCI... 46 3.1 1
(AC103451) Rattus norvegicus clone CH230-175H14, *** SEQUENC... 46 3.1 1
(CU694871) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.1 1
(CU595411) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.1 1
(AC230387) Bos taurus clone CH240-510L12, WORKING DRAFT SEQU... 46 3.1 1
(AC230383) Bos taurus clone CH240-510J7, WORKING DRAFT SEQUE... 46 3.1 1
(AC221305) Bos taurus clone CH240-402O19, WORKING DRAFT SEQU... 46 3.1 1
(AC218845) Bos taurus clone CH240-292E7, WORKING DRAFT SEQUE... 46 3.1 1
(AC182241) Bos taurus clone CH240-489F14, WORKING DRAFT SEQU... 46 3.1 1
(AC181378) Strongylocentrotus purpuratus clone R3-4B14, WORK... 46 3.1 1
(AC174198) Bos taurus clone CH240-174G13, WORKING DRAFT SEQU... 46 3.1 1
(AC173779) Bos taurus clone CH240-224O7, WORKING DRAFT SEQUE... 46 3.1 1
(AC169105) Bos taurus clone CH240-196I21, WORKING DRAFT SEQU... 46 3.1 1
(AC168293) Bos taurus clone CH240-233K21, WORKING DRAFT SEQU... 46 3.1 1
(AC023808) Mus musculus chromosome 11 clone RP23-254N15, ***... 46 3.1 1
(AZ926594) 476.dis09c01.s1 Saccharomyces castellii NRRL Y-12... 46 3.1 1
(FI239755) CccaBb014-F21JF CccABb Cajanus cajan genomic clon... 46 3.1 1
(EK357218) 1095468636981 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.1 1
(EK354839) 1095468469217 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.1 1
(DE975618) Macropus eugenii DNA, BAC clone: MEB1-182G19_F, 5... 46 3.1 1
(CR503647) mth2-181B19RM1 BAC end, cultivar Jemalong A17 of ... 46 3.1 1
(BZ208478) CH230-487N23.TJ CHORI-230 Segment 2 Rattus norveg... 46 3.1 1
(BZ145663) CH230-319D21.TJ CHORI-230 Segment 2 Rattus norveg... 46 3.1 1
(EL620796) 3-53 Chaetoceros neogracile EST Library Chaetocer... 46 3.1 1
(DY297813) IC0AAA93DC09RM1 CitNFL Citrus clementina cDNA 5',... 46 3.1 1
(DY296244) IC0AAA8BH10RM1 CitNFL Citrus clementina cDNA 5', ... 46 3.1 1
(DY285692) IC0AAA63DH02RM1 CitNFL Citrus clementina cDNA 5',... 46 3.1 1
(DY268467) IC0AAA24BB05RM1 CitNFL Citrus clementina cDNA 5',... 46 3.1 1
(DY265518) IC0AAA17CC03RM1 CitNFL Citrus clementina cDNA 5',... 46 3.1 1
(DR909772) USDA-FP_17900 Citrus sinensis phloem Citrus sinen... 46 3.1 1
(CX572511) TTE00028197 Amplicon Express - Conjugative Form T... 46 3.1 1
(FF575949) TTEDU09THB Tetrahymena thermophila conjugation cD... 46 3.1 1
(FC913742) IC0AAA63DH02RM1 IVIA1 Citrus clementina cDNA clon... 46 3.1 1
(FC912112) IC0AAA24BB05RM1 IVIA1 Citrus clementina cDNA clon... 46 3.1 1
(FC886821) IC0AAA17CC03RM1 IVIA1 Citrus clementina cDNA clon... 46 3.1 1
(EY813692) PT11-C1-900-040-C01-CT.F Poncirus trifoliata leaf... 46 3.1 1
(EY812708) PT11-C1-900-032-C11-CT.F Poncirus trifoliata leaf... 46 3.1 1
(EV839683) TT1EQ02TH Tetrahymena thermophila SB210 cDNA libr... 46 3.1 1
(AM180355) Clostridium difficile 630 complete genome. 46 3.1 1
(AU053289) Dictyostelium discoideum slug cDNA, clone SLI322. 32 3.2 3
(CU467672) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 3.3 9
(FI214796) CccaBa064-N8TR CccABa Cajanus cajan genomic clone... 40 3.4 2
(CU914721) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.5 9
(EL545054) EST_omor_rgc_9007 omorrgc mixed_tissue Osmerus mo... 44 3.6 2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 32 3.6 11
(ER321729) 1092344183366 Global-Ocean-Sampling_GS-34-01-01-1... 32 3.7 3
(BX927242) Zebrafish DNA sequence from clone CH211-195H1 in ... 34 3.7 5
(AL161738) Human DNA sequence from clone RP11-549G1 on chrom... 34 3.8 6
(AC169766) Bos taurus clone CH240-213F22, WORKING DRAFT SEQU... 40 3.8 5
(AC174511) Strongylocentrotus purpuratus clone R3-18J20, WOR... 40 3.8 5
(AL355354) Human DNA sequence from clone RP11-424A16 on chro... 36 3.9 4
(AC234594) Solanum tuberosum chromosome 1 clone RH183K03, **... 32 3.9 8
(ER967547) AF__Bc0009M23r AF__Bc Aquilegia formosa genomic, ... 34 3.9 3
(AC141181) Rattus norvegicus clone CH230-370O9, WORKING DRAF... 38 3.9 6
(AC225097) Medicago truncatula chromosome 2 clone mth2-106h6... 36 4.0 7
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 34 4.0 10
(CT737265) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.1 9
(AC151570) Dasypus novemcinctus clone VMRC5-73A7, WORKING DR... 34 4.2 6
(AC168328) Strongylocentrotus purpuratus clone R3-64C18, WOR... 36 4.3 8
(AU039582) Dictyostelium discoideum slug cDNA, clone SLE786. 34 4.6 3
(BX950211) Zebrafish DNA sequence from clone DKEY-57M14 in l... 34 4.7 8
(BX897728) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 32 4.7 10
(AC021733) Homo sapiens chromosome 8, clone RP11-775B15, com... 36 4.8 6
(Z98551) Plasmodium falciparum MAL3P6. 30 4.9 10
(AC102721) Mus musculus clone RP24-70I2, WORKING DRAFT SEQUE... 40 4.9 7
(AL954844) Zebrafish DNA sequence from clone XX-172G11. 34 4.9 5
(AR551716) Sequence 6847 from patent US 6747137. 42 5.0 2
(AL049659) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 38 5.2 4
(AC008613) Homo sapiens chromosome 5 clone CTB-136L17, compl... 38 5.4 3
(AL596028) Human DNA sequence from clone RP11-11L12 on chrom... 42 5.4 3
(AC114479) Homo sapiens chromosome 3 clone RP11-456E24, WORK... 36 5.5 8
(AC149207) Medicago truncatula chromosome 2 clone mte1-60l24... 36 5.5 5
(AC151598) Medicago truncatula chromosome 2 clone mte1-49g8,... 30 5.6 10
(AC012640) Homo sapiens chromosome 5 clone CTD-2256P15, comp... 34 5.6 7
(CT963106) Medicago truncatula chromosome 5 clone mth2-64o22... 34 5.7 7
(AC155824) Mus musculus BAC clone RP23-136L1 from chromosome... 34 5.8 2
(CU019606) M.truncatula DNA sequence from clone MTH2-77H1 on... 34 5.8 10
(AC224712) Bos taurus clone CH240-478G21, WORKING DRAFT SEQU... 32 5.8 2
(AC116473) Mus musculus chromosome 8, clone RP23-385E22, com... 34 5.8 2
(CR759734) Zebrafish DNA sequence from clone CH211-140L7 in ... 32 5.8 2
(CU463235) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 5.9 7
(CU695245) Pan troglodytes chromosome X clone CH251-245A11 m... 40 5.9 7
(CU638821) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6.0 5
(AL662872) Human DNA sequence *** SEQUENCING CANCELLED *** f... 30 6.0 10
(AC093815) Homo sapiens BAC clone RP11-362M19 from 4, comple... 40 6.0 6
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 38 6.0 17
(AC146566) Medicago truncatula clone mth2-71p5, complete seq... 38 6.0 7
(EK499417) 1095505202713 Global-Ocean-Sampling_GS-32-01-01-1... 32 6.1 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 6.1 12
(AC117463) Homo sapiens 3 BAC RP11-452B4 (Roswell Park Cance... 34 6.2 2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 30 6.2 10
(EU591746) Adoxophyes orana nucleopolyhedrovirus, complete g... 40 6.3 5
(AC008527) Homo sapiens chromosome 5 clone CTC-471D10, compl... 38 6.6 3
(AC024121) Homo sapiens chromosome 5 clone CTB-2J5, complete... 38 6.7 3
(EJ740756) 1092962014911 Global-Ocean-Sampling_GS-30-02-01-1... 32 6.7 3
(AP010897) Solanum lycopersicum DNA, chromosome 8, clone: C0... 40 6.7 4
(BJ929863) Daphnia magna cDNA, clone:IGU001_0050_A05.f, 5' e... 40 6.8 2
(AC168305) Medicago truncatula chromosome 4 clone mth2-48b24... 34 6.8 8
(CU984552) Brassica rapa subsp. pekinensis clone KBrB044K23,... 34 6.9 9
(AB022216) Arabidopsis thaliana genomic DNA, chromosome 3, P... 40 6.9 5
(AC131505) Lytechinus variegatus clone Lv97A18, *** SEQUENCI... 34 6.9 5
(AF474339) Dictyostelium discoideum ABC transporter ABCC.7 (... 36 6.9 3
(AC234293) Chlorocebus aethiops clone CH252-283G9, WORKING D... 36 7.0 7
(AC016556) Homo sapiens chromosome 5 clone CTC-369A16, compl... 38 7.0 3
(AC093739) Homo sapiens chromosome 2 clone RP11-22A4, WORKIN... 32 7.4 7
(AC166555) Spironucleus vortens clone JGIBAWF-5C15, complete... 44 7.5 2
(AM435315) Vitis vinifera contig VV78X252702.12, whole genom... 40 7.6 2
(AC146114) Pan troglodytes BAC clone RP43-22O2 from chromoso... 40 7.6 10
(AF409138) Lumpy skin disease virus isolate Neethling vaccin... 34 7.6 10
(AC146333) Medicago truncatula clone mth2-8d3, complete sequ... 32 7.6 9
(BZ485027) BONKS82TF BO_1.6_2_KB_tot Brassica oleracea genom... 28 7.7 4
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin... 34 7.7 10
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ... 34 7.7 10
(BM879438) kt95e01.y1 Strongyloides ratti PA female naive pA... 36 7.8 2
(AC011421) Homo sapiens chromosome 5 clone CTD-2303O5, compl... 34 7.8 8
(AL928673) Mouse DNA sequence from clone RP23-139B13 on chro... 38 7.9 4
(AZ122037) RPCI-23-11N11.TJ RPCI-23 Mus musculus genomic clo... 42 7.9 2
(CZ452299) MCF733k12TR Human MCF7 breast cancer cell line li... 34 7.9 2
(AC127401) Rattus norvegicus clone CH230-195E24, WORKING DRA... 38 7.9 8
(BJ347814) Dictyostelium discoideum cDNA clone:dda31c10, 3' ... 32 7.9 2
(BJ354590) Dictyostelium discoideum cDNA clone:dda54j04, 3' ... 32 7.9 2
(BJ352114) Dictyostelium discoideum cDNA clone:dda45n13, 3' ... 32 7.9 2
(BJ380668) Dictyostelium discoideum cDNA clone:ddc38m20, 3' ... 32 7.9 2
(BJ352881) Dictyostelium discoideum cDNA clone:dda48a11, 3' ... 32 7.9 2
(BJ350659) Dictyostelium discoideum cDNA clone:dda40i17, 3' ... 32 8.0 2
(BJ444390) Dictyostelium discoideum cDNA clone:ddv56a09, 3' ... 32 8.0 2
(BJ347860) Dictyostelium discoideum cDNA clone:dda31m07, 3' ... 32 8.0 2
(BJ384576) Dictyostelium discoideum cDNA clone:ddc49p21, 3' ... 32 8.0 2
(BJ406010) Dictyostelium discoideum cDNA clone:dds33g22, 3' ... 32 8.0 2
(BJ347885) Dictyostelium discoideum cDNA clone:dda31b15, 3' ... 32 8.0 2
(BJ378384) Dictyostelium discoideum cDNA clone:ddc31c22, 3' ... 32 8.0 2
(BJ357409) Dictyostelium discoideum cDNA clone:dda63p12, 3' ... 32 8.0 2
(BJ352991) Dictyostelium discoideum cDNA clone:dda48i16, 3' ... 32 8.0 2
(BJ403454) Dictyostelium discoideum cDNA clone:dds25n01, 3' ... 32 8.0 2
(BJ351319) Dictyostelium discoideum cDNA clone:dda42d23, 3' ... 32 8.0 2
(BJ350290) Dictyostelium discoideum cDNA clone:dda39i10, 3' ... 32 8.0 2
(BJ352105) Dictyostelium discoideum cDNA clone:dda45l13, 3' ... 32 8.0 2
(BJ406802) Dictyostelium discoideum cDNA clone:dds36b13, 3' ... 32 8.0 2
(BJ357926) Dictyostelium discoideum cDNA clone:dda65m05, 3' ... 32 8.0 2
(BJ353221) Dictyostelium discoideum cDNA clone:dda49k09, 3' ... 32 8.0 2
(BJ354470) Dictyostelium discoideum cDNA clone:dda53p18, 3' ... 32 8.0 2
(BJ383836) Dictyostelium discoideum cDNA clone:ddc47k12, 3' ... 32 8.0 2
(BJ357715) Dictyostelium discoideum cDNA clone:dda64p12, 3' ... 32 8.0 2
(BJ354018) Dictyostelium discoideum cDNA clone:dda52b11, 3' ... 32 8.0 2
(BJ348113) Dictyostelium discoideum cDNA clone:dda32a09, 3' ... 32 8.0 2
(BJ354709) Dictyostelium discoideum cDNA clone:dda54b16, 3' ... 32 8.0 2
(BJ350611) Dictyostelium discoideum cDNA clone:dda40p07, 3' ... 32 8.0 2
(BJ384890) Dictyostelium discoideum cDNA clone:ddc51i02, 3' ... 32 8.0 2
(BJ349813) Dictyostelium discoideum cDNA clone:dda37a20, 3' ... 32 8.0 2
(BJ356439) Dictyostelium discoideum cDNA clone:dda60f09, 3' ... 32 8.0 2
(BJ382957) Dictyostelium discoideum cDNA clone:ddc46l12, 3' ... 32 8.0 2
(BJ349498) Dictyostelium discoideum cDNA clone:dda36m16, 3' ... 32 8.0 2
(BJ385360) Dictyostelium discoideum cDNA clone:ddc54o15, 3' ... 32 8.0 2
(BJ353266) Dictyostelium discoideum cDNA clone:dda49e14, 3' ... 32 8.0 2
(BJ349735) Dictyostelium discoideum cDNA clone:dda37p12, 3' ... 32 8.0 2
(BJ383119) Dictyostelium discoideum cDNA clone:ddc46m22, 3' ... 32 8.0 2
(BJ351103) Dictyostelium discoideum cDNA clone:dda42f02, 3' ... 32 8.0 2
(EB188618) PEG001-C-007992-501 Non-Normalized Pedal-Pleural ... 34 8.0 2
(BJ403503) Dictyostelium discoideum cDNA clone:dds25h07, 3' ... 32 8.0 2
(BJ357882) Dictyostelium discoideum cDNA clone:dda65c05, 3' ... 32 8.0 2
(BJ350633) Dictyostelium discoideum cDNA clone:dda40d13, 3' ... 32 8.0 2
(C91436) Dictyostelium discoideum slug cDNA, clone SSK247. 32 8.0 2
(BJ357982) Dictyostelium discoideum cDNA clone:dda65j11, 3' ... 32 8.0 2
(BJ356618) Dictyostelium discoideum cDNA clone:dda60k22, 3' ... 32 8.0 2
(BJ354697) Dictyostelium discoideum cDNA clone:dda54p10, 3' ... 32 8.0 2
(BJ379782) Dictyostelium discoideum cDNA clone:ddc35p24, 3' ... 32 8.0 2
(BJ350261) Dictyostelium discoideum cDNA clone:dda39d07, 3' ... 32 8.0 2
(BJ356534) Dictyostelium discoideum cDNA clone:dda60j16, 3' ... 32 8.0 2
(BJ384636) Dictyostelium discoideum cDNA clone:ddc50n01, 3' ... 32 8.0 2
(BJ407589) Dictyostelium discoideum cDNA clone:dds43e03, 3' ... 32 8.0 2
(BJ358299) Dictyostelium discoideum cDNA clone:dda56m20, 3' ... 32 8.0 2
(BJ384713) Dictyostelium discoideum cDNA clone:ddc50o09, 3' ... 32 8.0 2
(BJ379009) Dictyostelium discoideum cDNA clone:ddc33c15, 3' ... 32 8.0 2
(BJ383546) Dictyostelium discoideum cDNA clone:ddc53l10, 3' ... 32 8.0 2
(BJ354314) Dictyostelium discoideum cDNA clone:dda53p05, 3' ... 32 8.0 2
(BJ355555) Dictyostelium discoideum cDNA clone:dda57p11, 3' ... 32 8.0 2
(BJ348352) Dictyostelium discoideum cDNA clone:dda32p20, 3' ... 32 8.0 2
(BJ351082) Dictyostelium discoideum cDNA clone:dda42b01, 3' ... 32 8.0 2
(BJ384982) Dictyostelium discoideum cDNA clone:ddc51l11, 3' ... 32 8.0 2
(BJ353398) Dictyostelium discoideum cDNA clone:dda50e01, 3' ... 32 8.0 2
(BJ349077) Dictyostelium discoideum cDNA clone:dda35f12, 3' ... 32 8.0 2
(BJ379796) Dictyostelium discoideum cDNA clone:ddc36c03, 3' ... 32 8.1 2
(BJ354066) Dictyostelium discoideum cDNA clone:dda52l12, 3' ... 32 8.1 2
(BJ348506) Dictyostelium discoideum cDNA clone:dda33o07, 3' ... 32 8.1 2
(BJ354643) Dictyostelium discoideum cDNA clone:dda54e08, 3' ... 32 8.1 2
(BJ347774) Dictyostelium discoideum cDNA clone:dda31k01, 3' ... 32 8.1 2
(AU061885) Dictyostelium discoideum slug cDNA, clone SLG481. 32 8.1 2
(BJ349155) Dictyostelium discoideum cDNA clone:dda35f18, 3' ... 32 8.1 2
(BJ378858) Dictyostelium discoideum cDNA clone:ddc33f02, 3' ... 32 8.1 2
(BJ357684) Dictyostelium discoideum cDNA clone:dda64j09, 3' ... 32 8.1 2
(BJ354791) Dictyostelium discoideum cDNA clone:dda54c20, 3' ... 32 8.1 2
(BJ350749) Dictyostelium discoideum cDNA clone:dda40l21, 3' ... 32 8.1 2
(BJ351679) Dictyostelium discoideum cDNA clone:dda44c12, 3' ... 32 8.1 2
(BJ355841) Dictyostelium discoideum cDNA clone:dda58l07, 3' ... 32 8.1 2
(BJ382053) Dictyostelium discoideum cDNA clone:ddc43b20, 3' ... 32 8.1 2
(BJ355885) Dictyostelium discoideum cDNA clone:dda58e14, 3' ... 32 8.1 2
(BJ385374) Dictyostelium discoideum cDNA clone:ddc54b20, 3' ... 32 8.1 2
(BJ354467) Dictyostelium discoideum cDNA clone:dda53p13, 3' ... 32 8.1 2
(BJ439407) Dictyostelium discoideum cDNA clone:ddv40i08, 3' ... 32 8.1 2
(BJ354854) Dictyostelium discoideum cDNA clone:dda55a01, 3' ... 32 8.1 2
(BJ351443) Dictyostelium discoideum cDNA clone:dda43a15, 3' ... 32 8.1 2
(BJ350547) Dictyostelium discoideum cDNA clone:dda40a07, 3' ... 32 8.1 2
(BJ348539) Dictyostelium discoideum cDNA clone:dda33e18, 3' ... 32 8.1 2
(BJ351503) Dictyostelium discoideum cDNA clone:dda43n18, 3' ... 32 8.1 2
(BJ357138) Dictyostelium discoideum cDNA clone:dda62g17, 3' ... 32 8.1 2
(BI404043) MI-P-CP1-nwv-f-09-0-UI.s1 MI-P-CP1 Sus scrofa cDN... 38 8.1 2
(BJ444311) Dictyostelium discoideum cDNA clone:ddv55p21, 3' ... 32 8.1 2
(BJ355573) Dictyostelium discoideum cDNA clone:dda57d18, 3' ... 32 8.1 2
(BJ351866) Dictyostelium discoideum cDNA clone:dda44i22, 3' ... 32 8.1 2
(BJ383597) Dictyostelium discoideum cDNA clone:ddc53h13, 3' ... 32 8.1 2
(BJ356941) Dictyostelium discoideum cDNA clone:dda61p19, 3' ... 32 8.1 2
(BJ356966) Dictyostelium discoideum cDNA clone:dda62d04, 3' ... 32 8.2 2
(BJ356873) Dictyostelium discoideum cDNA clone:dda61p16, 3' ... 32 8.2 2
(BJ378983) Dictyostelium discoideum cDNA clone:ddc33n08, 3' ... 32 8.2 2
(BJ357019) Dictyostelium discoideum cDNA clone:dda62n06, 3' ... 32 8.2 2
(EK365029) 1095469393101 Global-Ocean-Sampling_GS-31-01-01-1... 30 8.2 4
(AL844506) Plasmodium falciparum chromosome 7. 34 8.2 14
(BJ384136) Dictyostelium discoideum cDNA clone:ddc48k07, 3' ... 32 8.2 2
(AC178279) Strongylocentrotus purpuratus clone R3-3093L19, W... 44 8.2 5
(BJ356784) Dictyostelium discoideum cDNA clone:dda61m10, 3' ... 32 8.2 2
(AC201674) Strongylocentrotus purpuratus clone R3-1040H2, WO... 36 8.2 11
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion... 32 8.3 7
(AC176485) Strongylocentrotus purpuratus clone R3-114M14, WO... 40 8.4 7
(EI287765) GM_WBc0008B19.r GM_WBc Glycine max genomic clone ... 32 8.5 2
(DE517616) Bombyx mori genomic DNA, Fosmid clone:GBMFno135_m... 32 8.5 3
(CT486303) A BAC library has been constructed from cultivar ... 34 8.6 3
(AE008641) Rickettsia conorii str. Malish 7, section 73 of 1... 36 8.7 2
(ER323602) 1092344193509 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.7 3
(AY350713) Capsella rubella clone BAC Cr33L6, complete seque... 42 8.8 4
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 32 8.8 12
(AC011006) Homo sapiens chromosome 11 clone RP11-31I23 map 1... 36 8.9 5
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 9.0 16
(CP000025) Campylobacter jejuni RM1221, complete genome. 36 9.0 17
(AB261057) Entamoeba histolytica gene for gamma subunit isof... 44 9.1 2
(BV526287) G591P609037RE2.T0 Clint Pan troglodytes verus STS... 38 9.1 2
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 34 9.2 10
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 9.2 13
(AC210568) Chlorocebus aethiops clone CH252-199C9, WORKING D... 40 9.3 7
(CU655980) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 9.3 3
(CU256148) Equus caballus GSS, BAC clone CH241-403C1, T7 end... 38 9.4 2
(CE356080) tigr-gss-dog-17000361385946 Dog Library Canis lup... 36 9.5 2
(AC223689) Bos taurus clone CH240-461O9, WORKING DRAFT SEQUE... 36 9.6 6
(CU633670) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 9.7 5
(AY159040) Dictyostelium discoideum LvsD (lvsD) gene, partia... 38 9.8 3
(AZ293342) RPCI-23-159P16.TJ RPCI-23 Mus musculus genomic cl... 42 9.8 2
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 38 9.9 4
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 9.9 8
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 34 9.9 11
(EX163575) LY_YIT_DP1690 Dermatophagoides pteronyssinus cDNA... 38 9.9 2
(EC823777) SME00006097 esmbsro2 Sawyeria marylandensis cDNA,... 36 9.9 2

>(BJ372441) Dictyostelium discoideum cDNA clone:ddc12j16, 3' end,
single read.
Length = 710

Score = 1195 bits (603), Expect = 0.0
Identities = 603/603 (100%)
Strand = Plus / Minus


Query: 477 caattttatcaccgtcgttggatgttataaagaatcatgtttgtattggtgaagattact 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 caattttatcaccgtcgttggatgttataaagaatcatgtttgtattggtgaagattact 605


Query: 537 attatgaagtttcaaaagagtatttaaaatggaagaaattctgtgaaaatggtagtttgg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 attatgaagtttcaaaagagtatttaaaatggaagaaattctgtgaaaatggtagtttgg 545


Query: 597 agagagttaatttcgaaactgttggtgaatatttatatttattaaaaaacatttcaactg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agagagttaatttcgaaactgttggtgaatatttatatttattaaaaaacatttcaactg 485


Query: 657 agttatcaattttaaagagtaatttaatagtgtatgcagcggctgcagtatcagatttct 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agttatcaattttaaagagtaatttaatagtgtatgcagcggctgcagtatcagatttct 425


Query: 717 atataccattggacatgatggcacaacataaaattcaatcaaagaatcagtcattgacaa 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atataccattggacatgatggcacaacataaaattcaatcaaagaatcagtcattgacaa 365


Query: 777 tcacattggatccagtgccgaaaatgattaaattcttagtagacaattggtgtccaaatt 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcacattggatccagtgccgaaaatgattaaattcttagtagacaattggtgtccaaatt 305


Query: 837 catacattgtcacattcaaattagaaactgatcaaaccattttaaatgaaaaatgtttag 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catacattgtcacattcaaattagaaactgatcaaaccattttaaatgaaaaatgtttag 245


Query: 897 catcattatcaaattataatcatcaattagtaattggtaatctattatcagattacagaa 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 catcattatcaaattataatcatcaattagtaattggtaatctattatcagattacagaa 185


Query: 957 attgggtaatatttcatcaacaacaatctaagccaataattgttaaaagagaactaacac 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 attgggtaatatttcatcaacaacaatctaagccaataattgttaaaagagaactaacac 125


Query: 1017 aattccaaattcaacaacaacaaaaattatcaccatcatcttcttattctttaaaaaatg 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aattccaaattcaacaacaacaaaaattatcaccatcatcttcttattctttaaaaaatg 65


Query: 1077 ata 1079
|||
Sbjct: 64 ata 62

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,664,132,540
Number of extensions: 112795683
Number of successful extensions: 10559714
Number of sequences better than 10.0: 390
Length of query: 1207
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1183
Effective length of database: 99,340,224,878
Effective search space: 117519486030674
Effective search space used: 117519486030674
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.27
Homology vs Protein
Query= Contig-U03236-1 (Contig-U03236-1Q) /CSM_Contig/Contig-U03236-1Q.Seq.d
(1207 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

FN392320_1114(FN392320|pid:none) Pichia pastoris GS115 chromosom... 203 9e-51
CP000496_756(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 201 4e-50
AE017345_320(AE017345|pid:none) Cryptococcus neoformans var. neo... 193 1e-47
FM992690_535(FM992690|pid:none) Candida dubliniensis CD36 chromo... 191 5e-47
CR382129_265(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 185 3e-45
BT047632_1(BT047632|pid:none) Salmo salar clone ssal-rgb2-566-18... 183 9e-45
BC073269_1(BC073269|pid:none) Xenopus laevis MGC80633 protein, m... 182 2e-44
BC123078_1(BC123078|pid:none) Xenopus tropicalis phosphopantothe... 182 2e-44
BC116589_1(BC116589|pid:none) Danio rerio zgc:136566, mRNA (cDNA... 181 4e-44
EU072103_1(EU072103|pid:none) Eleutheria dichotoma POU class 6 m... 179 2e-43
AE014297_2723(AE014297|pid:none) Drosophila melanogaster chromos... 177 5e-43
(Q9USK7) RecName: Full=Uncharacterized protein C4B3.18; &AL1328... 176 2e-42
(P40506) RecName: Full=Uncharacterized protein YIL083C; &S49797... 172 3e-41
BT061126_1(BT061126|pid:none) Zea mays full-length cDNA clone ZM... 172 3e-41
EU966224_1(EU966224|pid:none) Zea mays clone 292679 phosphopanto... 171 4e-41
AK341622_1(AK341622|pid:none) Acyrthosiphon pisum ACYPI004137 mR... 169 1e-40
BT076043_1(BT076043|pid:none) Caligus rogercresseyi clone crog-e... 169 2e-40
AM920435_218(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 169 2e-40
CR382125_382(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 166 1e-39
CU633899_325(CU633899|pid:none) Podospora anserina genomic DNA c... 166 1e-39
CU928171_451(CU928171|pid:none) Kluyveromyces thermotolerans str... 164 5e-39
AM270038_36(AM270038|pid:none) Aspergillus niger contig An02c044... 163 1e-38
BT071316_1(BT071316|pid:none) Picea sitchensis clone WS02824_J09... 162 2e-38
BT077014_1(BT077014|pid:none) Caligus rogercresseyi clone crog-e... 162 2e-38
CR380959_293(CR380959|pid:none) Candida glabrata strain CBS138 c... 162 2e-38
AP003882_13(AP003882|pid:none) Oryza sativa Japonica Group genom... 162 3e-38
DQ213694_1(DQ213694|pid:none) Taeniopygia guttata clone 0058P005... 157 7e-37
(Q9HAB8) RecName: Full=Phosphopantothenate--cysteine ligase; ... 154 5e-36
AK021900_1(AK021900|pid:none) Homo sapiens cDNA FLJ11838 fis, cl... 154 6e-36
AM451580_1(AM451580|pid:none) Vitis vinifera contig VV78X003652.... 154 6e-36
AC024859_15(AC024859|pid:none) Caenorhabditis elegans cosmid Y71... 145 3e-33
FN357320_19(FN357320|pid:none) Schistosoma mansoni genome sequen... 122 2e-26
CT005264_197(CT005264|pid:none) Leishmania major strain Friedlin... 116 2e-24
(Q8VDG5) RecName: Full=Phosphopantothenate--cysteine ligase; ... 113 2e-23
EU072102_1(EU072102|pid:none) Eleutheria dichotoma phosphopantot... 101 5e-20
BC149455_1(BC149455|pid:none) Bos taurus phosphopantothenoylcyst... 100 1e-19
EU583471_1(EU583471|pid:none) Ovis aries DFP mRNA, complete cds. 100 1e-19
BT069825_1(BT069825|pid:none) Zea mays full-length cDNA clone ZM... 96 2e-18
CP001324_377(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 94 1e-17
AL445669_5(AL445669|pid:none) Human DNA sequence from clone RP11... 93 2e-17
BT035797_1(BT035797|pid:none) Zea mays full-length cDNA clone ZM... 92 3e-17
CR954201_40(CR954201|pid:none) Ostreococcus tauri strain OTTH059... 91 8e-17
CP000581_41(CP000581|pid:none) Ostreococcus lucimarinus CCE9901 ... 88 5e-16
AM910985_98(AM910985|pid:none) Plasmodium knowlesi strain H chro... 86 2e-15
AM494962_146(AM494962|pid:none) Leishmania braziliensis chromoso... 86 3e-15
BT069831_1(BT069831|pid:none) Zea mays full-length cDNA clone ZM... 79 2e-13
BC099208_1(BC099208|pid:none) Rattus norvegicus phosphopantothen... 72 3e-11
AL035475_56(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 69 3e-10
AE014186_22(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 68 8e-10
AY811278_1(AY811278|pid:none) Schistosoma japonicum SJCHGC02487 ... 67 2e-09
CP001463_480(CP001463|pid:none) Thermococcus sibiricus MM 739, c... 47 0.001
CP000425_525(CP000425|pid:none) Lactococcus lactis subsp. cremor... 44 0.012
AM406671_538(AM406671|pid:none) Lactococcus lactis subsp. cremor... 42 0.034
EF456682_1(EF456682|pid:none) Staphylococcus xylosus DSM20267 C2... 42 0.044
AM114193_2159(AM114193|pid:none) Uncultured methanogenic archaeo... 42 0.044
AE005176_573(AE005176|pid:none) Lactococcus lactis subsp. lactis... 41 0.098
AP009153_2195(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 39 0.49
AY596297_3119(AY596297|pid:none) Haloarcula marismortui ATCC 430... 38 0.83
CP001472_588(CP001472|pid:none) Acidobacterium capsulatum ATCC 5... 38 0.83
(Q54QD1) RecName: Full=Probable polyketide synthase 23; ... 37 1.1
AE005672_1160(AE005672|pid:none) Streptococcus pneumoniae TIGR4,... 37 1.4
CP000975_1518(CP000975|pid:none) Methylacidiphilum infernorum V4... 37 1.9
BA000016_1746(BA000016|pid:none) Clostridium perfringens str. 13... 36 3.2
DQ118404_11(DQ118404|pid:none) Uncultured euryarchaeote Alv-FOS4... 36 3.2
CP000360_3771(CP000360|pid:none) Acidobacteria bacterium Ellin34... 36 3.2
CR936257_685(CR936257|pid:none) Natronomonas pharaonis DSM 2160 ... 35 4.1
CP000879_576(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 35 4.1
AP008957_3010(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 35 7.1
AE016879_3677(AE016879|pid:none) Bacillus anthracis str. Ames, c... 35 7.1
FJ478174_1(FJ478174|pid:none) Orussus occidentalis mitochondrion... 34 9.2
BA000021_402(BA000021|pid:none) Wigglesworthia glossinidia endos... 34 9.2

>FN392320_1114(FN392320|pid:none) Pichia pastoris GS115 chromosome
2, complete sequence.
Length = 348

Score = 203 bits (517), Expect = 9e-51
Identities = 125/300 (41%), Positives = 163/300 (54%), Gaps = 3/300 (1%)
Frame = +2

Query: 80 EENFFKSVDLHKDFSEDLNRVKNFKERAIKNNAKVILITSGGTIVPFEKNMVRFLDNFSG 259
E N+FK SE V NF K N KV+L+TSGGT VP E N VRF+DNFS
Sbjct: 37 ENNYFKKHKPPPYLSEISKDVANFIASHNKQNRKVVLVTSGGTTVPLENNTVRFIDNFSA 96

Query: 260 GNRGATTAEYFLQKGYYVLFLSRKNSLQPFVKNLMLHETNFFTYLGIXXXXXXXXXXXXX 439
G RGAT+AEYFL+ GY V+FL R+ SL P+ ++ H TN F
Sbjct: 97 GTRGATSAEYFLENGYAVIFLHREFSLLPYSRHYS-HTTNCF------------------ 137

Query: 440 XXXXXXXXXXXXTILSPSLDVIKNHVCIGEDYYYEVSKEYLKWKKFCENGSLERVNFETV 619
L + V I +Y E+ K++ + G L V F TV
Sbjct: 138 --------------LDYMNEDENGQVVINAEYQNEMRVVLRKYQNARDKGLLLVVPFTTV 183

Query: 620 GEYLYLLKNISTELSILKSNLIVYAAAAVSDFYIPLDMMAQHKIQSKNQS---LTITLDP 790
+YL+ LK IS ELS++ N + Y AAAVSDF++P M +HKIQS+N + L ++L+
Sbjct: 184 HQYLFTLKLISQELSVIGPNGLFYLAAAVSDFFLPHSRMPEHKIQSQNDNDGKLRVSLEA 243

Query: 791 VPKMIKFLVDNWCPNSYIVTFKLETDQTILNEKCLASLSNYNHQLVIGNLLSDYRNWVIF 970
VPK + LVD+W P + I++FKLETD IL K +L YNHQLVIGNLL + V+F
Sbjct: 244 VPKFLSRLVDSWAPLAMIISFKLETDSNILLSKARGALERYNHQLVIGNLLQTRKKEVVF 303

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,519,473,689
Number of extensions: 25841623
Number of successful extensions: 64540
Number of sequences better than 10.0: 71
Number of HSP's gapped: 64495
Number of HSP's successfully gapped: 115
Length of query: 402
Length of database: 1,061,185,681
Length adjustment: 131
Effective length of query: 271
Effective length of database: 633,018,993
Effective search space: 171548147103
Effective search space used: 171548147103
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.37 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U03236-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0