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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16087-1
Contig ID Contig-U16087-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16087-1 (Contig-U16087-1Q) /CSM_Contig/Contig-U16087-1Q.Seq.d
ATCAGGAACTAATAATACTACTTTGACATCAAGTAATGATAGTAGTTCAC
TATTATCTTCATCATCTTCAAACAATAATAATACTACCACCAACACCACC
ACAATTACTACTAAAATTCAAGAAACAGCATCAATTCTAAGACAAAAACA
ATTGGNAGAAGAGCAATTTAAGAAAGATAAAGAACGTTTAGAAAAAGAGA
TACAGGAAAGCTATCGTTTAGAAAAAGAAAGATTAGAGAATGAACGTTTA
GAGAAAGAGAAACATCAATTACAAATGGAGAAAGAGCGTTTAGAGAGAGA
AAAAGAACGTTTAGAAAAGGAGAAGATGGAGAAAGAGAAACGTTTGGAGA
GAGAAAGACAAGAAAGAGATCGTTTGGAGAAAGAAAGACAAGAAAGAGAT
CGTTTAGAGAAAGAAAGAATAGAAAGAGAGAAACAAGAGAAAATTAAACA
AGAAAAACAAGCCAAACAACAAGCGAAAAAACAACAAC----------AT
AATAGTAATAGTAATATATATGGTAATAATAATAATAATAATAATAGTAA
TGGTAATTTGAATTTAAGAAAATCTGTTACATCATCAGTATCACCTCCAC
CAGGATTTGGTGGTTTCGATTCACAAAAACCTATGGTGAATCCACCACCA
GGTTTTGCTCCGACACCACCACCACCAGGTTTTCAAAACATTATACCACC
ACCAGGTTTTCAAAGTAATAACAACACCACCACAACCAACAACAACAACA
GCACAAACAATAATAACAACAACAACAATGGTAATAGTCTCAATAATAGT
TCTAGTACTATTAATGGCAATCAATTATTATCAATGGTTAATAATGGTTT
AATGAGTGGTCCAACTCCTTTTGTTGACCCATCAAATCTTTTTGATTCTC
AATATGATAATGATATGTTGGCAATGGAAAATATTAAAAATAAAGATAAA
AAGAAAAATAAAGAAGAACAAGANCAAGAACAACTTCAACTTCAACATCA
ACTTCATCAACAACAAATGCTACAACAACTTCATCAACAACAACAACAAC
AACTTTAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
TAATAATAATAATAATAATAATGTAAATCATTCACCAGCATCATTGGGTT
TGAATAATAATAATAATAACAACAATAACAATATCAATTGCAATGGTTTT
TTAAATATAATGGGTACAAATAACAATTGTAATAGTTTCGATCTAAATTT
AACAAGTTTAGGAAATTCTATGGTAAATATACCATTGTCACCTTCACGAT
CACCCTTATGTAATTTATCAAATTCACCATCTTCAAGTTCTTCTTCCTCT
TCTTCACCTCCATCACTTTCACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAAATTCTTACTCCTAAAAAGAAAATGATTT
CCACTTCAAACGGTGGTACATTTATAAAGAAAGAAGATACTTCGCCATTG
TTGAGTAATAGTAATATTTCATATTATCAATATACTCAACAACAACAACA
ACAACAACAATTACAGCAACAACAGCAATTGAATGGTGTAACTCAGTCAC
CAACTCAATCGCCAATTAAAAAGTATAATTCAATTGCTTCAAATGGTAAT
GGAGTTCATCATAACTCTTTAAATGGTTCAATGAATCATTACCATCAGCA
ACAACAACACCAACACCATCATCACCATCATCACCATCATAATAATAATA
TTTTTATTTGTAGTAGTGTCAATGGTACTACTTCAACCAACCCTTTATTA
CCACTACCATTGTTATCGACTACACATTCTTTATCATATAGTTTAATTGG
TACTACATCAAGTGGTATTAACGATCTTCACCATCAACAACAACATATCT
CGAATTATGGTCAATATTTTGGAATGCCGAACTTTAATCAATCAGTTGAT
TTCAATCTTTCCTTTAATCATACCATCACCAATCTATCGAATCTTGATCT
TCGTGGAATTAACATCTCTGATAATATTAATTCATCATCGAATAGTGGTT
CAACTTCATCGAGTTCAATCACAACATCAAGTTTAAGTATAAATAATAAT
A
Gap gap included
Contig length 2091
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 10
Number of EST 11
Link to clone list U16087
List of clone(s) 

est1=SLB556F,1,488
est2=SLB556Z,489,942
est3=VSI380F,626,1262
est4=SSA114F,662,1246
est5=SSM186Z,700,1238
est6=SSK514Z,947,1239
est7=SSF435F,1004,1752
est8=SSC514F,1177,1558
est9=SLD388F,1372,1487
est10=SSE828F,1412,1912
est11=SLG867F,1549,2091
Translated Amino Acid sequence 
SGTNNTTLTSSNDSSSLLSSSSSNNNNTTTNTTTITTKIQETASILRQKQLXEEQFKKDK
ERLEKEIQESYRLEKERLENERLEKEKHQLQMEKERLEREKERLEKEKMEKEKRLERERQ
ERDRLEKERQERDRLEKERIEREKQEKIKQEKQAKQQAKKQQ---

---NSNSNIYGNNNNNNNSNGNLNLRKSVTSSVSPPPGFGGFDSQKPMVNPPPGFAPTPP
PPGFQNIIPPPGFQSNNNTTTTNNNNSTNNNNNNNNGNSLNNSSSTINGNQLLSMVNNGL
MSGPTPFVDPSNLFDSQYDNDMLAMENIKNKDKKKNKEEQXQEQLQLQHQLHQQQMLQQL
HQQQQQQL*qqqqqqqqqqqqqq*******cksftsiigfe*****qq*qyqlqwffkyn
gyk*ql**frskfnkfrkfygkytivtftitlm*fikftifkffflfftsitfttttttt
ttttttttttnsys*kendfhfkrwyiykerryfaive***yfilsiystttttttitat
taiewcnsvtnsian*kv*fncfkw*wsss*lfkwfneslpsatttptpsspssps***y
fyl**cqwyyfnqpfitttividytffii*fnwyyikwy*rsspstttylelwsifwnae
l*sis*fqsfl*syhhqsies*sswn*hl**y*fiie*wfnfiefnhnikfkyk**
Translated Amino Acid sequence (All Frames) 
Frame A:
irn**yyfdik****ftiifiifkq**yyhqhhhnyy*nsrnsinsktktigrrai*er*
rtfrkrdtgklsfrkrkire*tfreretsitngerafrerkrtfrkgedgeretfgerkt
rkrsfgerktrkrsfrerknrkretren*trktsqttsektt---

---iiviviymviiiiiiivmvi*i*enllhhqyhlhqdlvvsihknlw*ihhqvllrhh
hhqvfktlyhhqvfkvittppqpttttaqtiittttmvivsiivlvllmainyyqwlimv
**vvqllllthqiflilnmimicwqwkilkikikrkikknkxknnfnfninfinnkcynn
finnnnnnfnnnnnnnnnnnnnnnnnnnnnnvnhspaslglnnnnnnnnnnincngflni
mgtnnncnsfdlnltslgnsmvniplspsrsplcnlsnspsssssssssppslsqqqqqq
qqqqqqqqqqqiltpkkkmistsnggtfikkedtspllsnsnisyyqytqqqqqqqqlqq
qqqlngvtqsptqspikkynsiasngngvhhnslngsmnhyhqqqqhqhhhhhhhhhnnn
ificssvngttstnpllplpllstthslsysligttssgindlhhqqqhisnygqyfgmp
nfnqsvdfnlsfnhtitnlsnldlrginisdninsssnsgstssssittsslsinnn

Frame B:
SGTNNTTLTSSNDSSSLLSSSSSNNNNTTTNTTTITTKIQETASILRQKQLXEEQFKKDK
ERLEKEIQESYRLEKERLENERLEKEKHQLQMEKERLEREKERLEKEKMEKEKRLERERQ
ERDRLEKERQERDRLEKERIEREKQEKIKQEKQAKQQAKKQQ---

---*****yiw*********w*fefkkicyiisitstriwwfrftktygesttrfcsdtt
ttrfskhytttrfsk**qhhhnqqqqqhkq**qqqqw**sq**f*yy*wqsiiing**wf
newsnsfc*piksf*fsi***yvgngky*k*r*kek*rrtrxrttstststssttnattt
ssttttttlttttttttttttttiiiiiiim*iihqhhwv*iiiiittitisiamvf*i*
wvqitivivsi*i*qv*eilw*iyhchlhdhpyviyqihhlqvllpllhlhhfhnnnnnn
nnnnnnnnnnkflllkrk*fplqtvvhl*rkkilrhc*vivifhiinilnnnnnnnnysn
nsn*mv*lshqlnrqlksiiqllqmvmefiitl*mvq*iitisnnntntiitiitiiiii
flfvvvsmvllqptlyyhyhcyrlhilyhiv*lvlhqvvltiftinnnisrimvnilecr
tlinqlisifpliipspiyrilifveltsliilihhrivvqlhrvqsqhqv*v*iii

Frame C:
qeliill*hqvmivvhyylhhlqtiiilpptppqlllkfkkqhqf*dknnwxksnlrkik
nv*kkryrkaiv*kkkd*rmnv*rkrninykwrksv*rekknv*krrrwrkrnvwrekdk
keivwrkkdkkeiv*rkke*kernkrklnkknkpnnkrknnn---

---NSNSNIYGNNNNNNNSNGNLNLRKSVTSSVSPPPGFGGFDSQKPMVNPPPGFAPTPP
PPGFQNIIPPPGFQSNNNTTTTNNNNSTNNNNNNNNGNSLNNSSSTINGNQLLSMVNNGL
MSGPTPFVDPSNLFDSQYDNDMLAMENIKNKDKKKNKEEQXQEQLQLQHQLHQQQMLQQL
HQQQQQQL*qqqqqqqqqqqqqq*******cksftsiigfe*****qq*qyqlqwffkyn
gyk*ql**frskfnkfrkfygkytivtftitlm*fikftifkffflfftsitfttttttt
ttttttttttnsys*kendfhfkrwyiykerryfaive***yfilsiystttttttitat
taiewcnsvtnsian*kv*fncfkw*wsss*lfkwfneslpsatttptpsspssps***y
fyl**cqwyyfnqpfitttividytffii*fnwyyikwy*rsspstttylelwsifwnae
l*sis*fqsfl*syhhqsies*sswn*hl**y*fiie*wfnfiefnhnikfkyk**
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16087-1 (Contig-U16087-1Q)
/CSM_Contig/Contig-U16087-1Q.Seq.d
         (2101 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16087-1 (Contig-U16087-1Q) /CSM_Contig/Conti...  1045  0.0
Contig-U16333-1 (Contig-U16333-1Q) /CSM_Contig/Conti...    54  9e-07
Contig-U01481-1 (Contig-U01481-1Q) /CSM_Contig/Conti...    52  4e-06
Contig-U11270-1 (Contig-U11270-1Q) /CSM_Contig/Conti...    48  6e-05
Contig-U15799-1 (Contig-U15799-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U15739-1 (Contig-U15739-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U13487-1 (Contig-U13487-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U12547-1 (Contig-U12547-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U12498-1 (Contig-U12498-1Q) /CSM_Contig/Conti...    46  2e-04

>Contig-U16087-1 (Contig-U16087-1Q) /CSM_Contig/Contig-U16087-1Q.Seq.d
          Length = 2101

 Score = 1045 bits (527), Expect = 0.0
 Identities = 527/527 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1575 gcaattgaatggtgtaactcagtcaccaactcaatcgccaattaaaaagtataattcaat 1634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1575 gcaattgaatggtgtaactcagtcaccaactcaatcgccaattaaaaagtataattcaat 1634

                                                                        
Query: 1635 tgcttcaaatggtaatggagttcatcataactctttaaatggttcaatgaatcattacca 1694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1635 tgcttcaaatggtaatggagttcatcataactctttaaatggttcaatgaatcattacca 1694

                                                                        
Query: 1695 tcagcaacaacaacaccaacaccatcatcaccatcatcaccatcataataataatatttt 1754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1695 tcagcaacaacaacaccaacaccatcatcaccatcatcaccatcataataataatatttt 1754

                                                                        
Query: 1755 tatttgtagtagtgtcaatggtactacttcaaccaaccctttattaccactaccattgtt 1814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1755 tatttgtagtagtgtcaatggtactacttcaaccaaccctttattaccactaccattgtt 1814

                                                                        
Query: 1815 atcgactacacattctttatcatatagtttaattggtactacatcaagtggtattaacga 1874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1815 atcgactacacattctttatcatatagtttaattggtactacatcaagtggtattaacga 1874

                                                                        
Query: 1875 tcttcaccatcaacaacaacatatctcgaattatggtcaatattttggaatgccgaactt 1934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1875 tcttcaccatcaacaacaacatatctcgaattatggtcaatattttggaatgccgaactt 1934

                                                                        
Query: 1935 taatcaatcagttgatttcaatctttcctttaatcataccatcaccaatctatcgaatct 1994
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1935 taatcaatcagttgatttcaatctttcctttaatcataccatcaccaatctatcgaatct 1994

                                                                        
Query: 1995 tgatcttcgtggaattaacatctctgataatattaattcatcatcgaatagtggttcaac 2054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1995 tgatcttcgtggaattaacatctctgataatattaattcatcatcgaatagtggttcaac 2054

                                                           
Query: 2055 ttcatcgagttcaatcacaacatcaagtttaagtataaataataata 2101
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2055 ttcatcgagttcaatcacaacatcaagtttaagtataaataataata 2101


 Score =  571 bits (288), Expect = e-162
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaggaactaataatactactttgacatcaagtaatgatagtagttcactattatcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcaggaactaataatactactttgacatcaagtaatgatagtagttcactattatcttc 60

                                                                       
Query: 61  atcatcttcaaacaataataatactaccaccaacaccaccacaattactactaaaattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atcatcttcaaacaataataatactaccaccaacaccaccacaattactactaaaattca 120

                                                                       
Query: 121 agaaacagcatcaattctaagacaaaaacaattggnagaagagcaatttaagaaagataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaaacagcatcaattctaagacaaaaacaattggnagaagagcaatttaagaaagataa 180

                                                                       
Query: 181 agaacgtttagaaaaagagatacaggaaagctatcgtttagaaaaagaaagattagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaacgtttagaaaaagagatacaggaaagctatcgtttagaaaaagaaagattagagaa 240

                                                              
Query: 241 tgaacgtttagagaaagagaaacatcaattacaaatggagaaagagcgttt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaacgtttagagaaagagaaacatcaattacaaatggagaaagagcgttt 291


 Score =  321 bits (162), Expect = 2e-87
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 558 ttgaatttaagaaaatctgttacatcatcagtatcacctccaccaggatttggtggtttc 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgaatttaagaaaatctgttacatcatcagtatcacctccaccaggatttggtggtttc 617

                                                                       
Query: 618 gattcacaaaaacctatggtgaatccaccaccaggttttgctccgacaccaccaccacca 677
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gattcacaaaaacctatggtgaatccaccaccaggttttgctccgacaccaccaccacca 677

                                                     
Query: 678 ggttttcaaaacattataccaccaccaggttttcaaagtaat 719
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggttttcaaaacattataccaccaccaggttttcaaagtaat 719


 Score =  315 bits (159), Expect = 2e-85
 Identities = 159/159 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1212 gggtacaaataacaattgtaatagtttcgatctaaatttaacaagtttaggaaattctat 1271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 gggtacaaataacaattgtaatagtttcgatctaaatttaacaagtttaggaaattctat 1271

                                                                        
Query: 1272 ggtaaatataccattgtcaccttcacgatcacccttatgtaatttatcaaattcaccatc 1331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 ggtaaatataccattgtcaccttcacgatcacccttatgtaatttatcaaattcaccatc 1331

                                                   
Query: 1332 ttcaagttcttcttcctcttcttcacctccatcactttc 1370
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ttcaagttcttcttcctcttcttcacctccatcactttc 1370


 Score =  293 bits (148), Expect = 6e-79
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                       
Query: 779 tggtaatagtctcaataatagttctagtactattaatggcaatcaattattatcaatggt 838
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tggtaatagtctcaataatagttctagtactattaatggcaatcaattattatcaatggt 838

                                                                       
Query: 839 taataatggtttaatgagtggtccaactccttttgttgacccatcaaatctttttgattc 898
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 taataatggtttaatgagtggtccaactccttttgttgacccatcaaatctttttgattc 898

                                       
Query: 899 tcaatatgataatgatatgttggcaatg 926
           ||||||||||||||||||||||||||||
Sbjct: 899 tcaatatgataatgatatgttggcaatg 926


 Score =  226 bits (114), Expect = 1e-58
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1423 attcttactcctaaaaagaaaatgatttccacttcaaacggtggtacatttataaagaaa 1482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 attcttactcctaaaaagaaaatgatttccacttcaaacggtggtacatttataaagaaa 1482

                                                                  
Query: 1483 gaagatacttcgccattgttgagtaatagtaatatttcatattatcaatatact 1536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 gaagatacttcgccattgttgagtaatagtaatatttcatattatcaatatact 1536


 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                          
Query: 1123 gtaaatcattcaccagcatcattgggtttg 1152
            ||||||||||||||||||||||||||||||
Sbjct: 1123 gtaaatcattcaccagcatcattgggtttg 1152


 Score = 36.2 bits (18), Expect = 0.21
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 179 aaagaacgtttagaaaaagaga 200
           ||||||||||||||||| ||||
Sbjct: 302 aaagaacgtttagaaaaggaga 323


>Contig-U16333-1 (Contig-U16333-1Q) /CSM_Contig/Contig-U16333-1Q.Seq.d
          Length = 2586

 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 1706 aacaccaacaccatcatcaccatcatcaccatcat 1740
            ||||||||||||||||||| |||||||| ||||||
Sbjct: 565  aacaccaacaccatcatcaacatcatcatcatcat 599


>Contig-U01481-1 (Contig-U01481-1Q) /CSM_Contig/Contig-U01481-1Q.Seq.d
          Length = 1101

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 1699 caacaacaacaccaacaccatcatcaccatcatcacca 1736
            ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 62   caacaacaacaacaacatcatcatcatcatcatcacca 99


 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 1684 aatcattaccatcagcaacaacaacaccaacaccatcatcaccatcatca 1733
            ||||| ||| |||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 44   aatcaatacaatcaacaacaacaacaacaacaacatcatcatcatcatca 93


 Score = 42.1 bits (21), Expect = 0.003
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 1699 caacaacaacaccaacaccatcatcaccatcatcaccatca 1739
            ||||||||||| ||||| || ||||| |||||||| |||||
Sbjct: 56   caacaacaacaacaacaacaacatcatcatcatcatcatca 96


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,850
Number of Sequences: 8402
Number of extensions: 77850
Number of successful extensions: 13919
Number of sequences better than 10.0: 750
length of query: 2101
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2084
effective length of database: 7,932,708
effective search space: 16531763472
effective search space used: 16531763472
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 3.12
Homology vs DNA 
Query= Contig-U16087-1 (Contig-U16087-1Q) /CSM_Contig/Contig-U16087-1Q.Seq.d
         (2101 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061982) Dictyostelium discoideum slug cDNA, clone SLG867.      652   0.0    2
(BJ329602) Dictyostelium discoideum cDNA clone:dda25j16, 5' ...   438   0.0    3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   329   0.0    8
(BJ329586) Dictyostelium discoideum cDNA clone:dda25g15, 5' ...   636   0.0    2
(AU033878) Dictyostelium discoideum slug cDNA, clone SLB556.      295   e-118  3
(AU072543) Dictyostelium discoideum slug cDNA, clone SSE828.      226   6e-96  2
(AU060807) Dictyostelium discoideum slug cDNA, clone SLB556.      329   3e-87  2
(AU268606) Dictyostelium discoideum vegetative cDNA clone:VS...   283   3e-72  3
(AU061149) Dictyostelium discoideum slug cDNA, clone SLD388.      149   5e-31  1
(AU072928) Dictyostelium discoideum slug cDNA, clone SSF435.       62   2e-05  2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.012  15
(EE674283) EST1397 Mycelia Grown in Nitrogen Limited Media C...    54   0.022  1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    38   0.043  13
(FG609985) stem_S055_B03.SEQ Opium poppy stem cDNA library P...    44   0.053  2
(AC180206) Strongylocentrotus purpuratus clone R3-3005F17, W...    52   0.087  1
(AC177210) Strongylocentrotus purpuratus clone R3-40C10, WOR...    52   0.087  1
(CC223600) CH261-62J11_Sp6.1 CH261 Gallus gallus genomic clo...    52   0.087  1
(DU079852) 55197 Tomato HindIII BAC Library Solanum lycopers...    42   0.18   2
(DE852966) Macropus eugenii DNA, BAC clone: MEB1-016M23_R, 3...    36   0.26   2
(AX346978) Sequence 2049 from Patent WO0200928.                    50   0.34   1
(ED801849) MG__Ba0002B04r MG__Ba Mimulus guttatus genomic, g...    50   0.34   1
(FL509696) 0223235 Adonis aestivalis flower Adonis aestivali...    50   0.34   1
(FM171410) Oryzias latipes EST, clone M087--D1_009.                38   0.35   2
(AY211984) Dictyostelium discoideum putative cyclic nucleoti...    36   0.50   4
(AC115578) Dictyostelium discoideum chromosome 2 map complem...    36   0.59   5
(CZ375665) ZMMBF0133N09r ZMMBF Zea mays genomic clone ZMMBF0...    42   1.0    2
(BI863061) rm16a06.y1 Meloidogyne arenaria egg pAMP1 v1 Chia...    38   1.2    3
(AC158625) Mus musculus 6 BAC RP23-78J15 (Roswell Park Cance...    48   1.4    1
(AC155944) Mus musculus 6 BAC RP24-493P12 (Roswell Park Canc...    48   1.4    1
(AC131508) Strongylocentrotus purpuratus clone Sp163O19, ***...    48   1.4    1
(AC127156) Rattus norvegicus clone CH230-7B10, *** SEQUENCIN...    48   1.4    1
(AC119130) Rattus norvegicus clone CH230-414I23, *** SEQUENC...    48   1.4    1
(AC115510) Rattus norvegicus clone CH230-383C9, *** SEQUENCI...    48   1.4    1
(AC112086) Rattus norvegicus clone CH230-332D11, *** SEQUENC...    48   1.4    1
(AC106373) Rattus norvegicus clone CH230-115O1, *** SEQUENCI...    48   1.4    1
(AC095424) Rattus norvegicus clone CH230-7A8, *** SEQUENCING...    48   1.4    1
(AC201206) Strongylocentrotus purpuratus clone R3-15D10, WOR...    48   1.4    1
(AC181552) Strongylocentrotus purpuratus clone R3-1109N20, W...    48   1.4    1
(AC168577) Strongylocentrotus purpuratus clone R3-3065I17, W...    48   1.4    1
(BH351240) CH230-54N11.TV CHORI-230 Segment 1 Rattus norvegi...    48   1.4    1
(BJ412119) Dictyostelium discoideum cDNA clone:ddv7d03, 5' e...    48   1.4    1
(FE856517) CAFU672.rev CAFU Pichia stipitis oxygen limited d...    48   1.4    1
(FE376398) CBNS2008.rev CBNS_Daphnia_pulex_Chosen_One_Librar...    48   1.4    1
(FE355271) CBIC9006.fwd CBIC_Daphnia_pulex_Chosen_One_Librar...    48   1.4    1
(FE355270) CBIC9006.rev CBIC_Daphnia_pulex_Chosen_One_Librar...    48   1.4    1
(EY090530) CAZI19427.fwd CAZI Artemisia annua normalized lea...    48   1.4    1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   1.6    10
(CZ319783) ZMMBF0021K15r ZMMBF Zea mays genomic clone ZMMBF0...    40   1.8    2
(AC190931) Zea mays chromosome 2 clone CH201-527F23; ZMMBBc0...    40   1.8    3
(BZ367521) id04h11.b1 WGS-SbicolorF (JM107 adapted methyl fi...    42   2.0    2
(CC781612) ZMMBBc0436N18f ZMMBBc Zea mays subsp. mays genomi...    40   2.0    2
(CW197570) 104_622_11181756_148_36827_048 Sorghum methylatio...    42   2.1    2
(BZ539519) OGAEJ60TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    42   2.4    2
(CC982583) ZUADP85TV ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   2.5    2
(CC713553) OGPAN89TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   2.5    2
(CC335685) OGUAL10TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   2.6    2
(AC111539) Rattus norvegicus clone CH230-158A12, WORKING DRA...    32   2.6    2
(CR925795) Zebrafish DNA sequence from clone DKEY-25C9 in li...    34   2.6    2
(CG217091) OG1ED17TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   2.7    2
(CG217101) OG1ED17TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   2.8    2
(AC200618) Zea mays chromosome 2 clone CH201-52K18; ZMMBBc00...    38   3.1    5
(AP006852) Candida albicans genomic DNA, chromosome 7, compl...    40   3.2    17
(FG663603) G1142P319FD16.T0 Anolis carolinensis pooled norma...    36   3.5    2
(FG663651) G1142P319RD16.T0 Anolis carolinensis pooled norma...    36   3.5    2
(DH598253) Rattus norvegicus DNA, BAC clone: RNB1-123C06, 3'...    34   3.5    2
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    36   3.6    13
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431...    40   3.7    3
(BZ688296) OGDAB38TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   3.9    2
(AB018543) Dictyostelium discoideum mkpA gene, complete cds.       34   4.3    5
(X03968) Yeast petite (23-3) mitochondrial DNA genome with o...    44   4.3    2
(CB254333) 73-E010740-019-001-A22-T7R MPIZ-ADIS-019 Arabidop...    44   4.3    2
(EC398557) PT0051a.F10.B7 PT005 Puccinia triticina cDNA clon...    38   4.5    2
(BJ424885) Dictyostelium discoideum cDNA clone:ddv53m19, 5' ...    38   4.7    2
(CC995870) ZUAF806TV ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   4.7    2
(BZ542800) OGAJD50TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    40   5.1    2
(Z26570) A. thaliana transcribed sequence; clone FAFH40; 3' ...    44   5.3    2
(AL772144) Zebrafish DNA sequence from clone CH211-164J3 in ...    46   5.4    1
(CT025594) Mouse DNA sequence from clone RP23-415M7 on chrom...    46   5.4    1
(AL732480) Mouse DNA sequence from clone RP23-11N21 on chrom...    46   5.4    1
(AC109247) Mus musculus chromosome 9, clone RP23-462C14, com...    46   5.4    1
(Z99707) Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 c...    46   5.4    1
(AP009761) Lotus japonicus genomic DNA, clone: LjT05F19, TM1...    46   5.4    1
(AL161590) Arabidopsis thaliana DNA chromosome 4, contig fra...    46   5.4    1
(AF375422) Arabidopsis thaliana AT4g36980/C7A10_380 gene, pa...    46   5.4    1
(AC214419) Populus trichocarpa clone POP109-H02, complete se...    46   5.4    1
(AC184063) Populus trichocarpa clone Pop1-108K13, complete s...    46   5.4    1
(AC149305) Medicago truncatula chromosome 6 clone mth2-78k4,...    46   5.4    1
(E10110) DNA encoding an allergen.                                 46   5.4    1
(AX505633) Sequence 328 from Patent WO0216655.                     46   5.4    1
(EF494729) Strongylocentrotus nudus GnRH-like tetrapeptide m...    46   5.4    1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    46   5.4    1
(AC019235) Homo sapiens BAC clone RP11-665C14 from 4, comple...    46   5.4    1
(AC012453) Homo sapiens BAC clone RP11-424P4 from 2, complet...    46   5.4    1
(AC140475) Homo sapiens chromosome UNK clone RP11-1287I9, **...    46   5.4    1
(AC130869) Rattus norvegicus clone CH230-138H13, WORKING DRA...    46   5.4    1
(AC106673) Rattus norvegicus clone CH230-108J3, WORKING DRAF...    46   5.4    1
(AC105334) Mus musculus clone RP23-264E5, LOW-PASS SEQUENCE ...    46   5.4    1
(CU928357) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.4    1
(CU638685) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.4    1
(AC233267) Homo sapiens chromosome 2 clone CH17-67J6, WORKIN...    46   5.4    1
(AC232453) Brassica rapa subsp. pekinensis clone KBrB017O23,...    46   5.4    1
(AC231355) Medicago truncatula clone mth2-103l13, WORKING DR...    46   5.4    1
(AC231342) Medicago truncatula clone mth2-33p5, WORKING DRAF...    46   5.4    1
(AC229616) Lama pacos clone CH246-370O14, WORKING DRAFT SEQU...    46   5.4    1
(AC208349) Zea mays chromosome 3 clone CH201-414D24; ZMMBBc0...    46   5.4    1
(AC198030) Zea mays chromosome unknown clone CH201-30G13; ZM...    46   5.4    1
(AC187916) Zea mays chromosome 3 clone CH201-303H16; ZMMBBc0...    46   5.4    1
(AK139228) Mus musculus 7 days neonate cerebellum cDNA, RIKE...    46   5.4    1
(EI978214) SB_BBc41-N10.R SB_BBc Sorghum bicolor genomic 3',...    46   5.4    1
(AL394178) T3 end of clone AR0AA015E04 of library AR0AA from...    46   5.4    1
(CZ895839) 226_1_12340773_5489_37958_021 Pine methylation un...    46   5.4    1
(CW986577) KBrH012P21R KBrH, Brassica rapa HindIII BAC libra...    46   5.4    1
(B25989) T3G5TF TAMU Arabidopsis thaliana genomic clone T3G5...    46   5.4    1
(ES100778) 127718_4031_2694 Arabidopsis ovule high throughpu...    46   5.4    1
(EG526012) AYAXM02TR pooled cDNA populations Arabidopsis tha...    46   5.4    1
(EG387005) BG01020B1B11.r1 BG01 - normalized library Leymus ...    46   5.4    1
(EE467991) BNSCS4CT_UP_004_A01_15JAN2005_015 Brassica napus ...    46   5.4    1
(AV782817) Arabidopsis thaliana cDNA clone:RAFL05-01-P01, 3'...    46   5.4    1
(AV528186) Arabidopsis thaliana cDNA clone:APZL03b08R, 5' end.     46   5.4    1
(DY675652) STRCM38JX cold-stressed Fragaria vesca seedlings ...    46   5.4    1
(DV419837) NADZ269TR Aedes aegypti infected with Dengue viru...    46   5.4    1
(DV417087) NADZ269TF Aedes aegypti infected with Dengue viru...    46   5.4    1
(DV350597) NABXW35TO Aedes aegypti infected with Plasmodium ...    46   5.4    1
(DV350595) NABXW35TF Aedes aegypti infected with Plasmodium ...    46   5.4    1
(DV125607) CV03042B2C06.f1 CV03-normalized library Euphorbia...    46   5.4    1
(AU261905) Dictyostelium discoideum vegetative cDNA clone:VS...    46   5.4    1
(DR371769) 104779 CERES-148 Arabidopsis thaliana cDNA clone ...    46   5.4    1
(DR276859) 12825554 CERES-AN65 Arabidopsis thaliana cDNA clo...    46   5.4    1
(DR276858) 45969 CERES-148 Arabidopsis thaliana cDNA clone 1...    46   5.4    1
(DR276857) 992881 CERES-130 Arabidopsis thaliana cDNA clone ...    46   5.4    1
(CO957387) AGENCOURT_30842818 NIH_MGC_146 Homo sapiens cDNA ...    46   5.4    1
(CO515171) s13dSG62C0300022_399207 Glandular trichomes Medic...    46   5.4    1
(CK746785) eca01-11cs1-e11 Eca01 Eschscholzia californica cD...    46   5.4    1
(AJ503863) Medicago truncatula EST, clone mtgmadc120039c07.        46   5.4    1
(CF181444) 818274 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence.     46   5.4    1
(CD798171) EST 14552 Ripe Grape (harvested at 5 p.m.) Pedicl...    46   5.4    1
(CD197533) MS1-0095P-V308-E01-U.B MS1-0095 Schistosoma manso...    46   5.4    1
(CB283504) DF0044 Dermatophagoides farinae cDNA library Derm...    46   5.4    1
(CB258196) 41-E011080-014-003-A11-T7R MPIZ-ADIS-014 Arabidop...    46   5.4    1
(CB005706) VVC024H12_137582 An expressed sequence tag databa...    46   5.4    1
(BX839128) Arabidopsis thaliana Full-length cDNA 5PRIM end o...    46   5.4    1
(BU787096) il54a01.y1 Kaestner ngn3 wt Mus musculus cDNA 5' ...    46   5.4    1
(BQ121108) EST606684 mixed potato tissues Solanum tuberosum ...    46   5.4    1
(BP560727) Arabidopsis thaliana cDNA clone:RAFL05-01-P01, 5'...    46   5.4    1
(BJ442116) Dictyostelium discoideum cDNA clone:ddv48k22, 3' ...    46   5.4    1
(BJ412835) Dictyostelium discoideum cDNA clone:ddv13d05, 5' ...    46   5.4    1
(BB256756) Mus musculus 7 days neonate cerebellum cDNA, RIKE...    46   5.4    1
(GE345591) MEUAP94TF JCVI-MT2 Medicago truncatula cDNA 5', m...    46   5.4    1
(FE243149) CAPG7507.fwd CAPG Naegleria gruberi amoeba stage ...    46   5.4    1
(EX676594) JS5AX59JG Draught stressed Fragaria vesca (strain...    46   5.4    1
(EX639714) 256627868 Pea aphid whole body normalized full le...    46   5.4    1
(EV033253) BNSCS2CT_UP_239_H06_02MAY2007_034 Brassica napus ...    46   5.4    1
(AV825829) Arabidopsis thaliana cDNA clone:RAFL07-15-I05, 5'...    46   5.4    1
(CP000821) Shewanella sediminis HAW-EB3, complete genome.          46   5.4    1
(BH776233) fzmb013f004b08f0 fzmb filtered library Zea mays g...    40   5.6    2
(BH776366) fzmb013f006d09f0 fzmb filtered library Zea mays g...    40   5.8    2
(BH773093) uzmb001f004f06f0 uzmb unfiltered library Zea mays...    40   5.9    2
(BZ776010) ih97e11.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   5.9    2
(AC181043) Strongylocentrotus purpuratus clone R3-3050G1, WO...    40   6.1    7
(CC166589) ii55a08.b2 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   6.2    2
(CC176542) ZMMBBc0300I02r ZMMBBc Zea mays subsp. mays genomi...    40   6.4    2
(CG850193) ZMMBBb0336P12.f ZMMBBb Zea mays subsp. mays genom...    40   6.4    2
(BZ529482) OGAIZ50TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    40   6.7    2
(CC166587) ii55a07.b2 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   6.8    2
(AC191801) Zea mays chromosome 4 clone CH201-31A1; ZMMBBc003...    40   6.8    2
(CZ304358) ZMMBF0082D03r ZMMBF Zea mays genomic clone ZMMBF0...    40   7.0    2
(CC166588) ii55a07.g2 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   7.1    2
(BZ639328) OGANM36TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   7.1    2
(EJ549393) 1092959429790 Global-Ocean-Sampling_GS-29-01-01-1...    40   7.2    2
(CC058413) ii55a07.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   7.2    2
(BZ622672) ig80a02.b1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   7.2    2
(CZ380978) ZMMBF0154C20f ZMMBF Zea mays genomic clone ZMMBF0...    40   7.2    2
(CC777084) ZMMBBc0428P01r ZMMBBc Zea mays subsp. mays genomi...    40   7.3    2
(BZ617674) ig21a07.b1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   7.4    2
(AJ429847) Human immunodeficiency virus type 1 proviral part...    42   7.4    2
(CG330620) OG4BV85TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   7.4    2
(BZ328717) id43a05.g1 WGS-ZmaysF (JM107 adapted methyl filte...    40   7.5    2
(CC786763) ZMMBBb0154E23.f ZMMBBb Zea mays subsp. mays genom...    40   7.6    2
(CZ307028) ZMMBF0002L11r ZMMBF Zea mays genomic clone ZMMBF0...    40   7.7    2
(CG016176) ZUAEJ62TV ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   7.7    2
(AE001377) Plasmodium falciparum 3D7 chromosome 2 section 14...    38   7.9    2
(CZ308576) ZMMBF0004P12r ZMMBF Zea mays genomic clone ZMMBF0...    40   7.9    2
(CC754952) ZMMBBb0139K08.f ZMMBBb Zea mays subsp. mays genom...    40   7.9    2
(CG265124) OG0AR38TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.0    2
(BZ731995) OGEDO02TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.0    2
(CC994287) ZUAD289TH ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   8.0    2
(CG005773) ZUAA776TH ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   8.1    2
(BZ645397) OGCAH28TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.1    2
(CG271467) OGXAT46TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.2    2
(CC166669) ii55e10.b2 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   8.2    2
(BZ410171) OGABF07TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.2    2
(BZ541503) OGAHE41TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    40   8.2    2
(CG252478) OGXDY95TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.3    2
(CG000555) ZUABK55TV ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   8.4    2
(CZ381276) ZMMBF0154L18r ZMMBF Zea mays genomic clone ZMMBF0...    40   8.4    2
(CC166670) ii55e10.g2 WGS-ZmaysF (DH5a methyl filtered) Zea ...    40   8.4    2
(CC604769) OGVFV17TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.4    2
(BZ731674) OGFAU64TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.4    2
(CC685204) OGWEO65TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.5    2
(CZ272556) ZMMBF0052B08r ZMMBF Zea mays genomic clone ZMMBF0...    40   8.5    2
(CL317565) ZMMBBc0056P19r ZMMBBc (EcoRI) Zea mays subsp. may...    40   8.5    2
(AC201321) Strongylocentrotus purpuratus clone R3-16L20, WOR...    34   8.6    7
(CC668280) OGUFD81TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.6    2
(CC756290) ZMMBBb0141L07.r ZMMBBb Zea mays subsp. mays genom...    40   8.6    2
(CC994185) ZUAGC71TH ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   8.6    2
(BZ525924) OGAIY49TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    40   8.6    2
(BZ409357) OGAAQ21TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.7    2
(CC703611) OGLAE82TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.8    2
(CZ362498) ZMMBF0140P17f ZMMBF Zea mays genomic clone ZMMBF0...    40   8.8    2
(CZ309221) ZMMBF0005D22r ZMMBF Zea mays genomic clone ZMMBF0...    40   8.8    2
(CG371730) OGXEP71TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.8    2
(BZ410162) OGABF07TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   8.8    2
(CZ349891) ZMMBF0125N22r ZMMBF Zea mays genomic clone ZMMBF0...    40   8.9    2
(EC416642) PT0151.F09--PT0051a.F10.CPTR PTmix Puccinia triti...    38   8.9    2
(CG265111) OG0AR38TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.0    2
(BZ529303) OGALS72TM ZM2_0.7_1.5_KB Zea mays genomic clone Z...    40   9.0    2
(BZ529295) OGALS72TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    40   9.1    2
(BZ407312) OGABA79TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.1    2
(CG283111) OG3AX78TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.1    2
(CG387207) ZMMBBc0566J09f ZMMBBc Zea mays subsp. mays genomi...    40   9.1    2
(BZ731666) OGFAU64TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.1    2
(CG374401) OG1AJ67TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.2    2
(CG355799) OGWKQ78TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.2    2
(CC971200) ZUACG09TV ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   9.2    2
(CZ347339) ZMMBF0121B13r ZMMBF Zea mays genomic clone ZMMBF0...    40   9.2    2
(FH237452) CHO_OF3436xg23r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   9.2    2
(CG374390) OG1AJ67TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.2    2
(BZ735389) OGFCA20TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.3    2
(CG232001) OG0FE84TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.3    2
(BZ742435) OGEBN83TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.3    2
(CZ385945) ZMMBF0161F06r ZMMBF Zea mays genomic clone ZMMBF0...    40   9.3    2
(BZ735399) OGFCA20TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.3    2
(CZ381529) ZMMBF0155G17f ZMMBF Zea mays genomic clone ZMMBF0...    40   9.4    2
(CC641811) OGUAA50TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.4    2
(BH485552) BOHNR78TF BOHN Brassica oleracea genomic clone BO...    42   9.4    2
(CC667830) OGUKL08TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.4    2
(ED542741) iq60a04.b1 Sub-library of 37 pooled maize BAC clo...    40   9.5    2
(BZ407305) OGABA79TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.5    2
(CG022837) ZMMBBc0557I23r ZMMBBc Zea mays subsp. mays genomi...    40   9.6    2
(CG270721) OGXAT45TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.6    2
(CG270948) OG1AA21TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.6    2
(CG452022) OG5DQ60TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.6    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   9.6    16
(CZ270784) ZMMBF0050E03f ZMMBF Zea mays genomic clone ZMMBF0...    40   9.6    2
(CG448041) OG3DA59TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.7    2
(CG308259) OG3DO94TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.7    2
(CG302327) OGZAQ56TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.7    2
(CC693752) OGLCE86TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.7    2
(CC984966) ZUACG62TH ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   9.7    2
(CR354440) Zebrafish DNA sequence from clone DKEYP-100B9 in ...    32   9.7    2
(BZ536295) OGALU43TM ZM2_0.7_1.5_KB Zea mays genomic clone Z...    40   9.8    2
(CG282813) OG0ER57TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.8    2
(CC148804) ZMMBBb0013M17.r ZMMBBb Zea mays subsp. mays genom...    40   9.8    2
(CZ360793) ZMMBF0103I11r ZMMBF Zea mays genomic clone ZMMBF0...    40   9.8    2
(CC645561) OGUBZ84TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   9.9    2
(BZ536290) OGALU43TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    40   9.9    2
(CG001249) ZUAFW31TH ZM_3.0_4.0_KB Zea mays genomic clone ZM...    40   9.9    2
(CZ323133) ZMMBF0026E22r ZMMBF Zea mays genomic clone ZMMBF0...    40   9.9    2
(DY887523) CeleSEQ3916 Cunninghamella elegans pBluescript (E...    38   10.0   2
(ES670483) WS0425.C21_J20 SS-NE-27 Picea sitchensis cDNA clo...    44   10.0   2
(CG232009) OG0FE84TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   10.0   2
(CZ314832) ZMMBF0013J14f ZMMBF Zea mays genomic clone ZMMBF0...    40   10.0   2

>(AU061982) Dictyostelium discoideum slug cDNA, clone SLG867.
          Length = 543

 Score =  652 bits (329), Expect(2) = 0.0
 Identities = 353/361 (97%)
 Strand = Plus / Plus


Query: 1741 aataataatatttttatttgtagtagtgtcaatggtactacttcaaccaaccctttatta 1800
            |||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 183  aataataataatatgattagtagtagtgtcaatggtactacttcaaccaaccctttatta 242


Query: 1801 ccactaccattgttatcgactacacattctttatcatatagtttaattggtactacatca 1860
            ||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct: 243  ccactaccattgtcatcgactacacattctttatcaaaaagtttaaatggtactacatca 302


Query: 1861 agtggtattaacgatcttcaccatcaacaacaacatatctcgaattatggtcaatatttt 1920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303  agtggtattaacgatcttcaccatcaacaacaacatatctcgaattatggtcaatatttt 362


Query: 1921 ggaatgccgaactttaatcaatcagttgatttcaatctttcctttaatcataccatcacc 1980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363  ggaatgccgaactttaatcaatcagttgatttcaatctttcctttaatcataccatcacc 422


Query: 1981 aatctatcgaatcttgatcttcgtggaattaacatctctgataatattaattcatcatcg 2040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423  aatctatcgaatcttgatcttcgtggaattaacatctctgataatattaattcatcatcg 482


Query: 2041 aatagtggttcaacttcatcgagttcaatcacaacatcaagtttaagtataaataataat 2100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483  aatagtggttcaacttcatcgagttcaatcacaacatcaagtttaagtataaataataat 542


Query: 2101 a 2101
            |
Sbjct: 543  a 543

 Score =  210 bits (106), Expect(2) = 0.0
 Identities = 106/106 (100%)
 Strand = Plus / Plus


Query: 1579 ttgaatggtgtaactcagtcaccaactcaatcgccaattaaaaagtataattcaattgct 1638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21   ttgaatggtgtaactcagtcaccaactcaatcgccaattaaaaagtataattcaattgct 80


Query: 1639 tcaaatggtaatggagttcatcataactctttaaatggttcaatga 1684
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81   tcaaatggtaatggagttcatcataactctttaaatggttcaatga 126

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,431,431,818
Number of extensions: 96557438
Number of successful extensions: 8231360
Number of sequences better than 10.0: 263
Length of query: 2101
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 2077
Effective length of database: 96,409,374,237
Effective search space: 200242270290249
Effective search space used: 200242270290249
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7.20
Homology vs Protein 
Query= Contig-U16087-1 (Contig-U16087-1Q) /CSM_Contig/Contig-U16087-1Q.Seq.d
         (2101 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_10(AC116956|pid:none) Dictyostelium discoideum chromoso...   107   2e-21
(Q8H0U8) RecName: Full=DEAD-box ATP-dependent RNA helicase 42;  ...    38   1.7
(Q5XHJ5) RecName: Full=Arginine/serine-rich coiled-coil protein ...    37   3.7
AP004729_12(AP004729|pid:none) Oryza sativa Japonica Group genom...    36   4.9
(Q7ZYR8) RecName: Full=Arginine/serine-rich coiled-coil protein ...    36   6.4
CP000499_281(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    36   6.4
AJ890364_182(AJ890364|pid:none) Emiliania huxleyi virus 86 isola...    35   8.3
AL844504_46(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    30   9.1

>AC116956_10(AC116956|pid:none) Dictyostelium discoideum chromosome 2
            map 1418423-1684967 strain AX4, complete sequence.
          Length = 1348

 Score =  107 bits (266), Expect = 2e-21
 Identities = 62/121 (51%), Positives = 62/121 (51%)
 Frame = +3

Query: 567  RKSVTSSVSPPPGFGGFDSQKPMVNXXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXX 746
            RKSVTSSVSPPPGFGGFDSQKPMVN                       Q
Sbjct: 1054 RKSVTSSVSPPPGFGGFDSQKPMVNPPPGFAPTPPPPGFQNIIPPPGFQSNNNTTTTNNN 1113

Query: 747  XXXXXXXXXXXXXXXXXXXXXXXXXQLLSMVNNGLMSGPTPFVDPSNLFDSQYDNDMLAM 926
                                     QLLSMVNNGLMSGPTPFVDPSNLFDSQYDNDMLAM
Sbjct: 1114 NSTNNNNNNNNGNSLNNSSSTINGNQLLSMVNNGLMSGPTPFVDPSNLFDSQYDNDMLAM 1173

Query: 927  E 929
            E
Sbjct: 1174 E 1174

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 32/34 (94%), Positives = 32/34 (94%)
 Frame = +2

Query: 113 KIQETASILRQKQLXEEQFKKDKERLEKEIQESY 214
           KIQETASILRQKQL EEQFKKDKERLEKE QESY
Sbjct: 417 KIQETASILRQKQLEEEQFKKDKERLEKEKQESY 450

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,632,004,792
Number of extensions: 19503695
Number of successful extensions: 58378
Number of sequences better than 10.0: 8
Number of HSP's gapped: 57653
Number of HSP's successfully gapped: 13
Length of query: 700
Length of database: 1,051,180,864
Length adjustment: 136
Effective length of query: 564
Effective length of database: 611,008,840
Effective search space: 344608985760
Effective search space used: 344608985760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.74  gvh: 0.44  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U16087-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 3
SS (DIR, S) 6
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0