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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16085-1
Contig ID Contig-U16085-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16085-1 (Contig-U16085-1Q) /CSM_Contig/Contig-U16085-1Q.Seq.d
GTAAAATATGAGTTCAAACGAAACTCTTCCAAATTCAGAACAAGAAAATA
ATAGTAAAACTGATACCAAAAATGATAATAAAAATATAGGTGATGAAAAC
AAAATAATCGATACAGATAAAGATATGAAAGACAATGATACCATAAATGG
TAAAGAGAATGGCAACATAAACATAAATAGTAATAATAACAATAATAATA
ATATTGATACAGATAAGGAAATGAAAGAAACTTCCTCAATTGAGGAAGAT
GATAATAATAATAATAAAAACCAAAACAACAATAATAATAATAATATTAA
AGAGGAGAACGATAATTTAACCGAACTCAAAAATAATAATAATAAAGAAA
ATAAAGAAAATAAAGAAGAAACAATTAAAGAGGATAAAGAAAAAGAGAAT
AATAAAGAACCTGTAAAAAATAAAGAAGAAACAAACAATATAAATAATAA
TAATAATAAAAATAATAATAGTGACAATATAAATAATAATAATAATAATA
ATAGTAAAGAAACATTAAATAAAATATCATCAATGTCAAAAGTATCATTA
ACAAGTGAAAGTTCAGAGATTAACGGTCAAGTGAATACGGGTGTAGTTAA
TAACAATACAAATATAGATATCACACAAACCAATCTTGATGAGCCAAGAG
ATTCAAGAGTAATAAAATCAATTTTAAAAACTATGGGTATTCAAGCTCAT
GAGCCAAGAGTTGTTAACCAACTCTTAGAATTTATGTATAAATATGTTTT
TGAGGTATTACAAGACGCAATGATATATGGTGAACATTCAGGAAAGACTG
ATATTGATGTATCAGATGTTAGATTATCAATTCAATCGAGAGTTAATTAT
CAAATTTCAACACCACCACCAAGGGAGCTATTATTATCAATAGCCGAAGA
AAAGAATAAAACACCATTACCACCCATTCCAAATAGATATGGTGTGTGAT
GACCATCTGGATGAATATCGTTTAATCATATCCAAACAGATCAAGCAAAT
CCAACAAAACCTGTATGAGAATCTGTTCAGGCATAGGTTGGAGAATAGTT
GACGTGGTAATTATAATAAAAAACAATCTGATAAACAAGTTTCAATTAAA
TTTAATTCAAT----------ACCACAACAGCACCTACAACAACATCACC
AACCATTCCATCTTTATCATCACCAACTACAGCAGCAACAACAATTACTG
TAAAGAAAGAGGATGTAAAAATGGATGATTTTGATGATTTTGATGGTCAA
ATGCAAGATGACATAACACCATCATCAACACCACAACAACCATCACAACC
AACAGAATCAGAAACAACAACAACTGCGACAGCAACAACAACACCTGCTG
TAACAACAACAACAATACCACCAACAACAACTTCAACCACACCACCAACA
ACAGCAACAACCTCAACAACACCACCACCATCAACAACAACTACTTCAAC
ACCACCAACAACTTCAACAACACCACCTCCACAAATAAAAGAACAAAAAT
AAATAGAAATTAAATNATTTATATTTATTCATATCATATTATATATATTT
ATAATAAAAAAAAAT
Gap gap included
Contig length 1555
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 3
Number of EST 6
Link to clone list U16085
List of clone(s) 

est1=AFI619F,1,622
est2=SLB461F,22,445
est3=VFI852F,489,1111
est4=SLB461X,659,853
est5=SLB461J,907,1103
est6=SLB461Z,1112,1555
Translated Amino Acid sequence 
vkyefkrnsskfrtrk***n*yqk***kyr**kqnnryr*ryerq*yhkw*rewqhkhk*
***q***y*yr*gnernfln*gr******kpkqq****y*rger*fnrtqk****rk*rk
*rrnn*rg*rkre**rtckk*rrnkqyk*****k****qyk********rnik*niinvk
siink*kfrd*rsseygcs**qykyryhtnqs**akrfksnkinfknygysss*aksc*p
tlriyv*icf*gitrrndiw*tfrkd*y*circ*iinsies*lsnfntttkgaiiinsrr
ke*ntitthsk*iwcvmtiwmniv*SYPNRSSKSNKTCMRICSGIGWRIVDVVIIIKNNL
INKFQLNLIQ---

---TTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMQDDITPSSTPQQP
SQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTT
PPPQIKEQK*ieikxfifihiilyifiikkn
Translated Amino Acid sequence (All Frames) 
Frame A:
vkyefkrnsskfrtrk***n*yqk***kyr**kqnnryr*ryerq*yhkw*rewqhkhk*
***q***y*yr*gnernfln*gr******kpkqq****y*rger*fnrtqk****rk*rk
*rrnn*rg*rkre**rtckk*rrnkqyk*****k****qyk********rnik*niinvk
siink*kfrd*rsseygcs**qykyryhtnqs**akrfksnkinfknygysss*aksc*p
tlriyv*icf*gitrrndiw*tfrkd*y*circ*iinsies*lsnfntttkgaiiinsrr
ke*ntitthsk*iwcvmtiwmniv*SYPNRSSKSNKTCMRICSGIGWRIVDVVIIIKNNL
INKFQLNLIQ---

---TTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMQDDITPSSTPQQP
SQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTT
PPPQIKEQK*ieikxfifihiilyifiikkn

Frame B:
*nmssnetlpnseqennsktdtkndnknigdenkiidtdkdmkdndtingkengninins
nnnnnnnidtdkemketssieeddnnnnknqnnnnnnnikeendnltelknnnnkenken
keetikedkekennkepvknkeetnninnnnnknnnsdninnnnnnnsketlnkissmsk
vsltsesseingqvntgvvnnntniditqtnldeprdsrviksilktmgiqaheprvvnq
llefmykyvfevlqdamiygehsgktdidvsdvrlsiqsrvnyqistppprelllsiaee
knktplppipnrygv**psg*isfnhiqtdqanptkpv*esvqa*vge*ltw*l**kti*
*tsfn*i*fn---

---pqqhlqqhhqpfhlyhhqlqqqqqll*rkrm*kwmilmilmvkckmt*hhhqhhnnh
hnqqnqkqqqlrqqqqhll*qqqqyhqqqlqphhqqqqqpqqhhhhqqqllqhhqqlqqh
hlhk*knknk*klnxlylfisyyiyl**kk

Frame C:
ki*vqtklfqiqnkkiivklipkmiiki*vmktk*siqiki*ktmip*mvkrmat*t*iv
iitiiiiliqirk*kklpqlrkmiiiiiktkttiiiiilkrrtii*pnskiiiikkikki
kkkqlkrikkkriiknl*kikkkqti*iiiiikiiivti*iiiiiiivkkh*ikyhqcqk
yh*qvkvqrltvk*irv*litiqi*ishkpilmsqeiqe**nqf*klwvfklmsqelltn
s*nlcinmflryyktq*ymvniqerlilmyqmldyqfnreliikfqhhhqgsyyyq*pkk
rikhhyhpfqidmvcddhldeyrliiskqikqiqqnlyenlfrhrlens*rgnynkkqsd
kqvsikfns---

---hnstynnitnhsifiitnyssnnnyckergckng*f**f*wsnar*hntiintttti
ttnrirnnnncdsnnntccnnnnnttnnnfnhttnnsnnlnntttinnnyfnttnnfnnt
tstnkrtkinrn*xiyiysyhiiyiynkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16085-1 (Contig-U16085-1Q)
/CSM_Contig/Contig-U16085-1Q.Seq.d
         (1565 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16085-1 (Contig-U16085-1Q) /CSM_Contig/Conti...  1471  0.0
Contig-U14914-1 (Contig-U14914-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U14963-1 (Contig-U14963-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U14113-1 (Contig-U14113-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U13969-1 (Contig-U13969-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U12135-1 (Contig-U12135-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U12017-1 (Contig-U12017-1Q) /CSM_Contig/Conti...    38  0.040
Contig-U09379-1 (Contig-U09379-1Q) /CSM_Contig/Conti...    38  0.040
Contig-U08000-1 (Contig-U08000-1Q) /CSM_Contig/Conti...    38  0.040

>Contig-U16085-1 (Contig-U16085-1Q) /CSM_Contig/Contig-U16085-1Q.Seq.d
          Length = 1565

 Score = 1471 bits (742), Expect = 0.0
 Identities = 772/772 (100%)
 Strand = Plus / Plus

                                                                        
Query: 504  gtaaagaaacattaaataaaatatcatcaatgtcaaaagtatcattaacaagtgaaagtt 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504  gtaaagaaacattaaataaaatatcatcaatgtcaaaagtatcattaacaagtgaaagtt 563

                                                                        
Query: 564  cagagattaacggtcaagtgaatacgggtgtagttaataacaatacaaatatagatatca 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564  cagagattaacggtcaagtgaatacgggtgtagttaataacaatacaaatatagatatca 623

                                                                        
Query: 624  cacaaaccaatcttgatgagccaagagattcaagagtaataaaatcaattttaaaaacta 683
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624  cacaaaccaatcttgatgagccaagagattcaagagtaataaaatcaattttaaaaacta 683

                                                                        
Query: 684  tgggtattcaagctcatgagccaagagttgttaaccaactcttagaatttatgtataaat 743
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684  tgggtattcaagctcatgagccaagagttgttaaccaactcttagaatttatgtataaat 743

                                                                        
Query: 744  atgtttttgaggtattacaagacgcaatgatatatggtgaacattcaggaaagactgata 803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744  atgtttttgaggtattacaagacgcaatgatatatggtgaacattcaggaaagactgata 803

                                                                        
Query: 804  ttgatgtatcagatgttagattatcaattcaatcgagagttaattatcaaatttcaacac 863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804  ttgatgtatcagatgttagattatcaattcaatcgagagttaattatcaaatttcaacac 863

                                                                        
Query: 864  caccaccaagggagctattattatcaatagccgaagaaaagaataaaacaccattaccac 923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864  caccaccaagggagctattattatcaatagccgaagaaaagaataaaacaccattaccac 923

                                                                        
Query: 924  ccattccaaatagatatggtgtgtgatgaccatctggatgaatatcgtttaatcatatcc 983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  ccattccaaatagatatggtgtgtgatgaccatctggatgaatatcgtttaatcatatcc 983

                                                                        
Query: 984  aaacagatcaagcaaatccaacaaaacctgtatgagaatctgttcaggcataggttggag 1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  aaacagatcaagcaaatccaacaaaacctgtatgagaatctgttcaggcataggttggag 1043

                                                                        
Query: 1044 aatagttgacgtggtaattataataaaaaacaatctgataaacaagtttcaattaaattt 1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 aatagttgacgtggtaattataataaaaaacaatctgataaacaagtttcaattaaattt 1103

                                                                        
Query: 1104 aattcaatnnnnnnnnnnaccacaacagcacctacaacaacatcaccaaccattccatct 1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 aattcaatnnnnnnnnnnaccacaacagcacctacaacaacatcaccaaccattccatct 1163

                                                                        
Query: 1164 ttatcatcaccaactacagcagcaacaacaattactgtaaagaaagaggatgtaaaaatg 1223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 ttatcatcaccaactacagcagcaacaacaattactgtaaagaaagaggatgtaaaaatg 1223

                                                                
Query: 1224 gatgattttgatgattttgatggtcaaatgcaagatgacataacaccatcat 1275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 gatgattttgatgattttgatggtcaaatgcaagatgacataacaccatcat 1275


 Score =  323 bits (163), Expect = 5e-88
 Identities = 163/163 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaaatatgagttcaaacgaaactcttccaaattcagaacaagaaaataatagtaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtaaaatatgagttcaaacgaaactcttccaaattcagaacaagaaaataatagtaaaac 60

                                                                       
Query: 61  tgataccaaaaatgataataaaaatataggtgatgaaaacaaaataatcgatacagataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgataccaaaaatgataataaaaatataggtgatgaaaacaaaataatcgatacagataa 120

                                                      
Query: 121 agatatgaaagacaatgataccataaatggtaaagagaatggc 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agatatgaaagacaatgataccataaatggtaaagagaatggc 163


 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                          
Query: 204 ttgatacagataaggaaatgaaagaaacttcctcaattgaggaagat 250
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttgatacagataaggaaatgaaagaaacttcctcaattgaggaagat 250


 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 297 ttaaagaggagaacgataatttaaccgaact 327
           |||||||||||||||||||||||||||||||
Sbjct: 297 ttaaagaggagaacgataatttaaccgaact 327


 Score = 36.2 bits (18), Expect = 0.16
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 231 cttcctcaattgaggaag 248
           ||||||||||||||||||
Sbjct: 248 cttcctcaattgaggaag 231


 Score = 30.2 bits (15), Expect = 9.8
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 110 gatacagataaagatatgaaaga 132
           ||||||||||| || ||||||||
Sbjct: 206 gatacagataaggaaatgaaaga 228


 Score = 30.2 bits (15), Expect = 9.8
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 206 gatacagataaggaaatgaaaga 228
           ||||||||||| || ||||||||
Sbjct: 110 gatacagataaagatatgaaaga 132


>Contig-U14914-1 (Contig-U14914-1Q) /CSM_Contig/Contig-U14914-1Q.Seq.d
          Length = 199

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1202 aaagaaagaggatgtaaaaatgg 1224
            |||||||||||||||||||||||
Sbjct: 177  aaagaaagaggatgtaaaaatgg 199


>Contig-U14963-1 (Contig-U14963-1Q) /CSM_Contig/Contig-U14963-1Q.Seq.d
          Length = 2100

 Score = 42.1 bits (21), Expect = 0.003
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 1166 atcatcaccaactacagcagcaacaacaa 1194
            |||||||||||||||| || |||||||||
Sbjct: 1169 atcatcaccaactacatcaacaacaacaa 1197


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,630
Number of Sequences: 8402
Number of extensions: 29630
Number of successful extensions: 3782
Number of sequences better than 10.0: 518
length of query: 1565
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1549
effective length of database: 7,941,110
effective search space: 12300779390
effective search space used: 12300779390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.12
Homology vs DNA 
Query= Contig-U16085-1 (Contig-U16085-1Q) /CSM_Contig/Contig-U16085-1Q.Seq.d
         (1565 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...   835   0.0    7
(BJ414269) Dictyostelium discoideum cDNA clone:ddv18h14, 5' ...   835   0.0    3
(BJ326797) Dictyostelium discoideum cDNA clone:dda18e06, 5' ...   190   1e-97  4
(AU033804) Dictyostelium discoideum slug cDNA, clone SLB461.      276   2e-69  1
(AU060778) Dictyostelium discoideum slug cDNA, clone SLB461.       96   8e-36  3
(EU862134) Megalagrion eudytum clone MegEu13 microsatellite ...    42   0.001  2
(FF705495) XABT113155.fwd Gateway compatible cien cDNA libra...    40   0.052  2
(DT737292) EST1171141 Aquilegia cDNA library Aquilegia formo...    52   0.064  1
(AC173978) Strongylocentrotus purpuratus clone R3-3071O10, W...    34   0.15   2
(AY449461) Oikopleura dioica clone BACOIKO005 4xj24, complet...    34   0.15   2
(EY323527) CAWX9049.fwd CAWX Helobdella robusta Primary Earl...    34   0.19   2
(CZ204913) AIAA-aae28n15.b1 Ancylostoma caninum whole genome...    34   0.19   2
(BZ284533) CH230-385E7.TVB CHORI-230 Segment 2 Rattus norveg...    34   0.19   2
(BW249566) Ciona intestinalis cDNA, clone:citb082d19, 5' end...    40   0.25   2
(CO467164) MZCCL20046H09.g Maize Endosperm cDNA Library Zea ...    50   0.25   1
(CO465212) MZCCS20032C02.g Maize Endosperm cDNA Library Zea ...    50   0.25   1
(CO455321) MZCCS20002A02.g Maize Endosperm cDNA Library Zea ...    50   0.25   1
(BW335572) Ciona intestinalis cDNA, clone:cidg851f15, 5'end,...    40   0.27   2
(BP016156) Ciona intestinalis cDNA, clone:ciad64b02, 5' end,...    40   0.27   2
(AC144515) Medicago truncatula clone mth2-5j8, complete sequ...    42   0.27   3
(BW192111) Ciona intestinalis cDNA, clone:ciad095m14, 5' end...    40   0.28   2
(BW314712) Ciona intestinalis cDNA, clone:ciht039h07, 5' end...    40   0.28   2
(BW265801) Ciona intestinalis cDNA, clone:cign041o10, 5' end...    40   0.28   2
(BP007999) Ciona intestinalis cDNA, clone:ciad46g02, 5' end,...    40   0.29   2
(BW307215) Ciona intestinalis cDNA, clone:ciht016b05, 5' end...    40   0.29   2
(BP000526) Ciona intestinalis cDNA, clone:cicl31p12, 5' end,...    40   0.30   2
(BW265514) Ciona intestinalis cDNA, clone:cign040o10, 5' end...    40   0.30   2
(BW193819) Ciona intestinalis cDNA, clone:cicl101p23, 5' end...    40   0.30   2
(BW259047) Ciona intestinalis cDNA, clone:cign001j16, 5' end...    40   0.30   2
(AC119697) Rattus norvegicus clone CH230-135B13, WORKING DRA...    34   0.54   2
(AC171140) Helobdella robusta clone CH306-1B2, complete sequ...    34   0.57   2
(AK116673) Ciona intestinalis cDNA, clone:cicl031p12, full i...    40   0.64   2
(AF517943) Helobdella robusta hedgehog-like protein (hh) mRN...    34   0.67   2
(EB547593) AGENCOURT_52936309 D. erecta EST Drosophila erect...    34   0.71   2
(CO370324) RTK1_67_D08.b1_A029 Roots minus potassium Pinus t...    34   0.71   2
(EB602522) AGENCOURT_56935298 D. grimshawi EST Drosophila gr...    34   0.72   2
(EY330915) CAWY3817.fwd CAWY Helobdella robusta Subtracted E...    34   0.72   2
(CV065538) WNEL23e6 Wheat EST endosperm library Triticum aes...    34   0.72   2
(AM209142) Paracentrotus lividus EST, clone MPMGp1174E0517Q,...    38   0.72   2
(EB558264) AGENCOURT_51782645 D. virilis EST Drosophila viri...    34   0.72   2
(AV999633) Ciona intestinalis cDNA, clone:cicl27l12, 5' end,...    38   0.87   2
(EB324296) CNSN01-F-102315-501 Normalized CNS library (juven...    40   0.90   2
(CZ946406) 296424 Tomato EcoRI BAC Library Solanum lycopersi...    48   1.0    1
(BQ242432) TaE15029E01F TaE15 Triticum aestivum cDNA clone T...    48   1.0    1
(EY336117) CAWY7479.fwd CAWY Helobdella robusta Subtracted E...    46   1.2    2
(EY345063) CAWZ13647.fwd CAWZ Helobdella robusta Primary Lat...    46   1.4    2
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    32   1.4    2
(EY306151) CAWX19761.fwd CAWX Helobdella robusta Primary Ear...    46   1.5    2
(DU829804) KBrS005J16F KBrS, Brassica rapa Sau3AI BAC librar...    42   1.5    2
(AE017341) Cryptococcus neoformans var. neoformans JEC21 chr...    32   1.7    2
(BJ412922) Dictyostelium discoideum cDNA clone:ddv13m07, 5' ...    32   2.0    3
(AC010033) Drosophila melanogaster 3L BAC RP98-3I5 (Roswell ...    32   2.0    2
(AC225351) Zea mays chromosome 9 clone CH201-530G3; ZMMBBc05...    32   2.0    2
(AC230028) Zea mays chromosome 9 clone CH201-216I11; ZMMBBc0...    32   2.0    2
(AC014952) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   2.2    2
(CQ596657) Sequence 24415 from Patent WO0171042.                   32   2.2    2
(AF091712) Spisula solidissima cytoplasmic polyadenylation e...    34   2.5    2
(FE232249) CAPG1650.fwd CAPG Naegleria gruberi amoeba stage ...    34   2.7    2
(AI062420) GH01617.5prime GH Drosophila melanogaster head pO...    32   2.7    2
(FC798518) CBGC2547.rev CBGC Lottia gigantea 15h 18h embryos...    34   2.7    2
(BJ370037) Dictyostelium discoideum cDNA clone:ddc52m24, 5' ...    36   2.7    2
(CB013030) Hc_ad_49G05_SKPL Haemonchus contortus adult from ...    36   2.7    2
(BJ371486) Dictyostelium discoideum cDNA clone:ddc58a08, 5' ...    36   2.7    2
(BJ394198) Dictyostelium discoideum cDNA clone:dds34o02, 5' ...    36   2.7    2
(BJ364715) Dictyostelium discoideum cDNA clone:ddc32n17, 5' ...    36   2.7    2
(BJ334878) Dictyostelium discoideum cDNA clone:dda48k03, 5' ...    36   2.7    2
(BJ333735) Dictyostelium discoideum cDNA clone:dda43g22, 5' ...    36   2.7    2
(BJ333018) Dictyostelium discoideum cDNA clone:dda41n06, 5' ...    36   2.7    2
(BJ365469) Dictyostelium discoideum cDNA clone:ddc35a17, 5' ...    36   2.7    2
(BJ394688) Dictyostelium discoideum cDNA clone:dds36k05, 5' ...    36   2.7    2
(BJ394020) Dictyostelium discoideum cDNA clone:dds33b16, 5' ...    36   2.7    2
(FK222077) XABT224807.b1 Gateway compatible cien cDNA librar...    34   2.7    2
(BJ393005) Dictyostelium discoideum cDNA clone:dds29b23, 5' ...    36   2.7    2
(BJ339490) Dictyostelium discoideum cDNA clone:dda65d16, 5' ...    36   2.7    2
(BJ331495) Dictyostelium discoideum cDNA clone:dda35k13, 5' ...    36   2.7    2
(BJ370106) Dictyostelium discoideum cDNA clone:ddc52m02, 5' ...    36   2.7    2
(BJ397614) Dictyostelium discoideum cDNA clone:dds46n24, 5' ...    36   2.7    2
(BJ331741) Dictyostelium discoideum cDNA clone:dda36k20, 5' ...    36   2.7    2
(BJ393094) Dictyostelium discoideum cDNA clone:dds30g05, 5' ...    36   2.7    2
(BJ335138) Dictyostelium discoideum cDNA clone:dda49g05, 5' ...    36   2.7    2
(EB301725) CNSN01-F-059857-501 Normalized CNS library (juven...    34   2.7    2
(AL928651) Mouse DNA sequence from clone RP23-167A19 on chro...    46   4.0    1
(AC214019) Macaca mulatta  BAC CH250-362O5 (Children's Hospi...    46   4.0    1
(AC143033) Macaca mulatta clone CH250-267J10, WORKING DRAFT ...    46   4.0    1
(AC123272) Rattus norvegicus clone CH230-308E15, *** SEQUENC...    46   4.0    1
(AC098556) Rattus norvegicus clone CH230-81P1, *** SEQUENCIN...    46   4.0    1
(AC096140) Rattus norvegicus clone CH230-10O20, *** SEQUENCI...    46   4.0    1
(EK185141) 1095458141161 Global-Ocean-Sampling_GS-31-01-01-1...    46   4.0    1
(EK087023) 1092961161607 Global-Ocean-Sampling_GS-31-01-01-1...    46   4.0    1
(BZ438686) BONHB09TF BO_1.6_2_KB_tot Brassica oleracea genom...    46   4.0    1
(DV622133) IV-1091-405D-D07.T7-1 UGIV-1091-Reseq Zea mays cD...    46   4.0    1
(DT765757) EST1199606 Aquilegia cDNA library Aquilegia formo...    46   4.0    1
(DT738332) EST1172181 Aquilegia cDNA library Aquilegia formo...    46   4.0    1
(DN572181) 92245163 Sea Urchin primary mesenchyme cell cDNA ...    46   4.0    1
(EX810644) CBNA1562.rev CBNA Phycomyces blakesleeanus NRRL15...    38   4.0    2
(BW260725) Ciona intestinalis cDNA, clone:cign025l23, 5' end...    40   4.0    2
(EY315504) CAWX26093.fwd CAWX Helobdella robusta Primary Ear...    44   5.0    2
(EY352584) CAWZ18902.fwd CAWZ Helobdella robusta Primary Lat...    36   5.2    2
(FB571328) Sequence 195 from Patent EP1865317.                     44   5.5    2
(EY305626) CAWX19476.fwd CAWX Helobdella robusta Primary Ear...    44   5.5    2
(AC131775) Mus musculus BAC clone RP24-313O6 from 6, complet...    38   6.0    3
(AC168128) Bos taurus clone CH240-214G10, WORKING DRAFT SEQU...    44   6.2    4
(CR380953) Candida glabrata strain CBS138 chromosome G compl...    32   6.5    2
(AC095248) Rattus norvegicus clone CH230-10C8, *** SEQUENCIN...    32   6.8    2
(AC130748) Rattus norvegicus clone CH230-144B18, WORKING DRA...    32   7.1    2
(AC094681) Rattus norvegicus clone CH230-5G12, *** SEQUENCIN...    32   7.2    2
(AC180814) Strongylocentrotus purpuratus clone R3-3071M24, W...    34   7.4    2
(AC177759) Strongylocentrotus purpuratus clone R3-1005K13, W...    34   7.4    2
(AC181961) Strongylocentrotus purpuratus clone R3-1002H24, W...    34   7.4    2
(AY939844) Cyanophage P-SSM2, complete genome.                     40   8.7    8
(ER535723) 1093015836554 Global-Ocean-Sampling_GS-35-01-01-1...    42   8.9    2
(AI069309) mgae0006cC09f Magnaporthe grisea Appressorium Sta...    32   9.8    2
(FK858777) 000004952973E23 D. serrata mRNA from different de...    32   9.8    2
(EX256617) 1436496_5_B06_031 PY06 Carica papaya cDNA, mRNA s...    32   9.8    2
(FK866428) 0000099773A07 D. serrata mRNA from different deve...    32   9.8    2
(EB630170) AGENCOURT_54977457 D. mojavensis EST Drosophila m...    34   9.9    2
(FK862544) 00000952873P1 D. serrata mRNA from different deve...    32   9.9    2
(FK866386) 00000995073M02 D. serrata mRNA from different dev...    32   9.9    2
(EY479522) CBBP10319.fwd CBBP Hirudo medicinalis hermaphrodi...    32   9.9    2
(EY497159) CBBP3379.fwd CBBP Hirudo medicinalis hermaphrodit...    32   9.9    2
(EY479521) CBBP10319.rev CBBP Hirudo medicinalis hermaphrodi...    32   9.9    2
(FK866718) 0000099873M20 D. serrata mRNA from different deve...    32   9.9    2
(EY375224) CAXA15513.rev CAXA Helobdella robusta Subtracted ...    32   9.9    2
(EB628644) AGENCOURT_55024052 D. mojavensis EST Drosophila m...    32   9.9    2
(AM221169) Paracentrotus lividus EST, clone MPMGp1174J0346Q,...    34   9.9    2
(FK866238) 0000099873H22 D. serrata mRNA from different deve...    32   10.0   2
(AM215459) Paracentrotus lividus EST, clone MPMGp1174E1632Q,...    34   10.0   2
(EY500591) CBBP5343.fwd CBBP Hirudo medicinalis hermaphrodit...    32   10.0   2
(FK859392) 000004981173D08 D. serrata mRNA from different de...    32   10.0   2

>(AC116920) Dictyostelium discoideum chromosome 2 map 4415041-4520361
             strain AX4, complete sequence.
          Length = 105320

 Score =  835 bits (421), Expect(7) = 0.0
 Identities = 421/421 (100%)
 Strand = Plus / Plus


Query: 527   tcatcaatgtcaaaagtatcattaacaagtgaaagttcagagattaacggtcaagtgaat 586
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38402 tcatcaatgtcaaaagtatcattaacaagtgaaagttcagagattaacggtcaagtgaat 38461


Query: 587   acgggtgtagttaataacaatacaaatatagatatcacacaaaccaatcttgatgagcca 646
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38462 acgggtgtagttaataacaatacaaatatagatatcacacaaaccaatcttgatgagcca 38521


Query: 647   agagattcaagagtaataaaatcaattttaaaaactatgggtattcaagctcatgagcca 706
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38522 agagattcaagagtaataaaatcaattttaaaaactatgggtattcaagctcatgagcca 38581


Query: 707   agagttgttaaccaactcttagaatttatgtataaatatgtttttgaggtattacaagac 766
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38582 agagttgttaaccaactcttagaatttatgtataaatatgtttttgaggtattacaagac 38641


Query: 767   gcaatgatatatggtgaacattcaggaaagactgatattgatgtatcagatgttagatta 826
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38642 gcaatgatatatggtgaacattcaggaaagactgatattgatgtatcagatgttagatta 38701


Query: 827   tcaattcaatcgagagttaattatcaaatttcaacaccaccaccaagggagctattatta 886
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38702 tcaattcaatcgagagttaattatcaaatttcaacaccaccaccaagggagctattatta 38761


Query: 887   tcaatagccgaagaaaagaataaaacaccattaccacccattccaaatagatatggtgtg 946
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38762 tcaatagccgaagaaaagaataaaacaccattaccacccattccaaatagatatggtgtg 38821


Query: 947   t 947
             |
Sbjct: 38822 t 38822

 Score =  268 bits (135), Expect(7) = 0.0
 Identities = 138/139 (99%)
 Strand = Plus / Plus


Query: 1122  accacaacagcacctacaacaacatcaccaaccattccatctttatcatcaccaactaca 1181
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39362 accacaacagcacctacaacaacatcaccaaccattccatctttatcatcaccaactaca 39421


Query: 1182  gcagcaacaacaattactgtaaagaaagaggatgtaaaaatggatgattttgatgatttt 1241
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39422 gcagcaacaacaattactgtaaagaaagaggatgtaaaaatggatgattttgatgatttt 39481


Query: 1242  gatggtcaaatgcaagatg 1260
             |||||||||||| ||||||
Sbjct: 39482 gatggtcaaatgaaagatg 39500

 Score =  119 bits (60), Expect(7) = 0.0
 Identities = 60/60 (100%)
 Strand = Plus / Plus


Query: 1052  acgtggtaattataataaaaaacaatctgataaacaagtttcaattaaatttaattcaat 1111
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38923 acgtggtaattataataaaaaacaatctgataaacaagtttcaattaaatttaattcaat 38982

 Score = 95.6 bits (48), Expect(7) = 0.0
 Identities = 48/48 (100%)
 Strand = Plus / Plus


Query: 204   ttgatacagataaggaaatgaaagaaacttcctcaattgaggaagatg 251
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38079 ttgatacagataaggaaatgaaagaaacttcctcaattgaggaagatg 38126

 Score = 87.7 bits (44), Expect(7) = 0.0
 Identities = 44/44 (100%)
 Strand = Plus / Plus


Query: 1     gtaaaatatgagttcaaacgaaactcttccaaattcagaacaag 44
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37876 gtaaaatatgagttcaaacgaaactcttccaaattcagaacaag 37919

 Score = 71.9 bits (36), Expect(7) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 131   gacaatgataccataaatggtaaagagaatggcaac 166
             ||||||||||||||||||||||||||||||||||||
Sbjct: 38006 gacaatgataccataaatggtaaagagaatggcaac 38041

 Score = 54.0 bits (27), Expect(7) = 0.0
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 990   atcaagcaaatccaacaaaacctgtat 1016
             |||||||||||||||||||||||||||
Sbjct: 38862 atcaagcaaatccaacaaaacctgtat 38888

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,090,134,668
Number of extensions: 69485085
Number of successful extensions: 6015782
Number of sequences better than 10.0: 133
Length of query: 1565
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1541
Effective length of database: 96,409,374,237
Effective search space: 148566845699217
Effective search space used: 148566845699217
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.20
Homology vs Protein 
Query= Contig-U16085-1 (Contig-U16085-1Q) /CSM_Contig/Contig-U16085-1Q.Seq.d
         (1565 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006577_24(AC006577|pid:none) Sequence of BAC F15I1 from Arabid...   123   2e-26
DQ207851_1(DQ207851|pid:none) Solanum tuberosum clone 074G12 unk...   122   4e-26
BT066104_1(BT066104|pid:none) Zea mays full-length cDNA clone ZM...   115   3e-24
EF084906_1(EF084906|pid:none) Picea sitchensis clone WS0294_I16 ...   115   3e-24
BC082431_1(BC082431|pid:none) Xenopus laevis hypothetical LOC494...   115   4e-24
EU959481_1(EU959481|pid:none) Zea mays clone 218287 transcriptio...   114   8e-24
BT081456_1(BT081456|pid:none) Rana catesbeiana clone rcat-evr-50...   114   1e-23
AX885017_1(AX885017|pid:none) Sequence 880 from Patent EP1033401.     111   8e-23
AK312579_1(AK312579|pid:none) Homo sapiens cDNA, FLJ92954, highl...   110   1e-22
AK135097_1(AK135097|pid:none) Mus musculus adult male olfactory ...   110   1e-22
AK131710_1(AK131710|pid:none) Mus musculus adult male testis cDN...   110   1e-22
(Q6NZA9) RecName: Full=Transcription initiation factor TFIID sub...   110   1e-22
DQ768754_1(DQ768754|pid:none) Sander vitreus TATA binding protei...   110   1e-22
(Q62880) RecName: Full=Transcription initiation factor TFIID sub...   110   2e-22
JC5511(JC5511) TATA-binding protein-associated factor II 31 - ra...   110   2e-22
(Q17QQ4) RecName: Full=Transcription initiation factor TFIID sub...   108   5e-22
AY888669_1(AY888669|pid:none) Synthetic construct Homo sapiens c...   108   5e-22
AY891313_1(AY891313|pid:none) Synthetic construct Homo sapiens c...   108   5e-22
CR859331_1(CR859331|pid:none) Pongo abelii mRNA; cDNA DKFZp459A1...   108   5e-22
(Q5BKE0) RecName: Full=Transcription initiation factor TFIID sub...   108   7e-22
AY325235_1(AY325235|pid:none) Rattus norvegicus Cb1-739 mRNA, co...   108   7e-22
AY359819_1(AY359819|pid:none) Rattus norvegicus liver regenerati...   107   2e-21
AC135559_8(AC135559|pid:none) Oryza sativa chromosome 3 BAC OSJN...   102   3e-20
AK009322_1(AK009322|pid:none) Mus musculus adult male tongue cDN...   102   5e-20
AY061338_1(AY061338|pid:none) Drosophila melanogaster LD26511 fu...    96   5e-18
(Q27272) RecName: Full=Transcription initiation factor TFIID sub...    96   5e-18
AL391737_134(AL391737|pid:none) chromosome I of strain GB-M1 of ...    94   1e-17
CP000499_316(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    91   1e-16
AY123061_1(AY123061|pid:none) Griffithsia japonica transcription...    90   3e-16
CR382126_1066(CR382126|pid:none) Kluyveromyces lactis strain NRR...    86   3e-15
CU928169_166(CU928169|pid:none) Kluyveromyces thermotolerans str...    86   5e-15
CR382131_946(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    85   6e-15
FN392320_149(FN392320|pid:none) Pichia pastoris GS115 chromosome...    83   2e-14
AX885019_1(AX885019|pid:none) Sequence 882 from Patent EP1033401.      79   4e-13
CU928178_519(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    79   6e-13
AP007155_416(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    73   3e-11
AX885018_1(AX885018|pid:none) Sequence 881 from Patent EP1033401.      73   3e-11
AM269985_1(AM269985|pid:none) Aspergillus niger contig An01c0380...    69   5e-10
AM920431_1408(AM920431|pid:none) Penicillium chrysogenum Wiscons...    66   4e-09
BX842637_13(BX842637|pid:none) Neurospora crassa DNA linkage gro...    57   1e-06
AK086656_1(AK086656|pid:none) Mus musculus 15 days embryo head c...    38   1.2
(Q7Z7C8) RecName: Full=Transcription initiation factor TFIID sub...    38   1.2
(A7MAZ4) RecName: Full=Transcription initiation factor TFIID sub...    38   1.2
AK049949_1(AK049949|pid:none) Mus musculus adult male hippocampu...    38   1.2
AK076486_1(AK076486|pid:none) Mus musculus 0 day neonate head cD...    38   1.2
(Q9EQH4) RecName: Full=Transcription initiation factor TFIID sub...    38   1.2
AK057383_1(AK057383|pid:none) Homo sapiens cDNA FLJ32821 fis, cl...    38   1.2
BC049422_1(BC049422|pid:none) Danio rerio TAF8 RNA polymerase II...    35   7.6
(Q6P0T2) RecName: Full=Transcription initiation factor TFIID sub...    35   7.6
(Q3E835) RecName: Full=Uncharacterized protein YOL086W-A;              35   9.9
EU968479_1(EU968479|pid:none) Zea mays clone 321238 hypothetical...    35   9.9

>AC006577_24(AC006577|pid:none) Sequence of BAC F15I1 from
           Arabidopsis thaliana chromosome 1, complete sequence.
           &AF238327_1(AF238327|pid:none)
           &AY087886_1(AY087886|pid:none)
           &AY463624_1(AY463624|pid:none)
           &BT025537_1(BT025537|pid:none) &E96582(E96582)
          Length = 183

 Score =  123 bits (308), Expect = 2e-26
 Identities = 53/95 (55%), Positives = 75/95 (78%)
 Frame = +2

Query: 638 DEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSD 817
           D PRD++++KS+LK+MG++ +EPRV++Q LE  Y+YV EVL DA +Y EH+ K +ID  D
Sbjct: 8   DVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNIDCDD 67

Query: 818 VRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLP 922
           V+L+IQS+VN+  S PPPRE+LL +A  +NK PLP
Sbjct: 68  VKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLP 102

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,153,789,278
Number of extensions: 18298887
Number of successful extensions: 41191
Number of sequences better than 10.0: 51
Number of HSP's gapped: 41105
Number of HSP's successfully gapped: 51
Length of query: 521
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 388
Effective length of database: 620,718,517
Effective search space: 240838784596
Effective search space used: 240838784596
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.76  gvh: 0.50  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U16085-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0