Contig-U16080-1 |
Contig ID |
Contig-U16080-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2560 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1054399 |
End point |
1051831 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
6 |
Number of EST |
8 |
Link to clone list |
U16080 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
Query= Contig-U16080-1 (Contig-U16080-1Q) /CSM_Contig/Contig-U16080-1Q.Seq.d (2570 letters)
Database: CSM 8402 sequences; 8,075,542 total letters
Score E Sequences producing significant alignments: (bits) Value
Contig-U16080-1 (Contig-U16080-1Q) /CSM_Contig/Conti... 1631 0.0 Contig-U15936-1 (Contig-U15936-1Q) /CSM_Contig/Conti... 672 0.0 Contig-U15158-1 (Contig-U15158-1Q) /CSM_Contig/Conti... 62 5e-09 Contig-U14955-1 (Contig-U14955-1Q) /CSM_Contig/Conti... 52 4e-06 Contig-U13001-1 (Contig-U13001-1Q) /CSM_Contig/Conti... 52 4e-06 Contig-U15270-1 (Contig-U15270-1Q) /CSM_Contig/Conti... 48 7e-05 Contig-U16304-1 (Contig-U16304-1Q) /CSM_Contig/Conti... 46 3e-04 Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Conti... 46 3e-04 Contig-U16268-1 (Contig-U16268-1Q) /CSM_Contig/Conti... 44 0.001 Contig-U15751-1 (Contig-U15751-1Q) /CSM_Contig/Conti... 44 0.001
>Contig-U16080-1 (Contig-U16080-1Q) /CSM_Contig/Contig-U16080-1Q.Seq.d Length = 2570
Score = 1631 bits (823), Expect = 0.0 Identities = 847/859 (98%) Strand = Plus / Plus
Query: 1 tatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaactgctgttgaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaactgctgttgaat 60
Query: 61 cttcaaaattatttggcggcggtggtattactttcaatgcaccaaatatattcggtaaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cttcaaaattatttggcggcggtggtattactttcaatgcaccaaatatattcggtaaca 120
Query: 121 atagtaatccatcaaacttatttggcagtggtaataacaattcttcatcactatttggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 atagtaatccatcaaacttatttggcagtggtaataacaattcttcatcactatttggtg 180
Query: 181 gtaattcaacaaccaatcctcctccattatttggaaataaatctgatgtcaaaactgagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtaattcaacaaccaatcctcctccattatttggaaataaatctgatgtcaaaactgagg 240
Query: 241 aatcagaaaagaaggctgaagcatgtactccatcaccatcaaccacatcaggtaaattaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aatcagaaaagaaggctgaagcatgtactccatcaccatcaaccacatcaggtaaattaa 300
Query: 301 tttggaaatgtttatgttgtgaaactgaaaattcagnnnnnnnnnnnngctgctccgttt 360 |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 301 tttggaaatgtttatgttgtgaaactgaaaattcagaaaaagaaaaaagctgctccgttt 360
Query: 361 gtatggtcccattaccaaagaatgtcaaatttgaatcaccagcttctgaatcaaatacta 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gtatggtcccattaccaaagaatgtcaaatttgaatcaccagcttctgaatcaaatacta 420
Query: 421 aaccatcatcaatatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aaccatcatcaatatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaa 480
Query: 481 ctgctgttgactcttctaaattatttggtggtggcggcagtaatactattactttcaacg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ctgctgttgactcttctaaattatttggtggtggcggcagtaatactattactttcaacg 540
Query: 541 caccaactttattcggtaacaataacaatagtaatccatcaaacttatttggcagtggta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 caccaactttattcggtaacaataacaatagtaatccatcaaacttatttggcagtggta 600
Query: 601 ataacaattcttcatcactatttggtggcaattcaacaaccatccaaccatcgcaatcat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 ataacaattcttcatcactatttggtggcaattcaacaaccatccaaccatcgcaatcat 660
Query: 661 tatttggaactaagtcaactgaaaccaaatctgatgacccaatgtcgcttaaagaaatgt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 tatttggaactaagtcaactgaaaccaaatctgatgacccaatgtcgcttaaagaaatgt 720
Query: 721 caaatacaattcaagataatgatgctcaaaattcagattcagaatcacatgaagaattag 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 caaatacaattcaagataatgatgctcaaaattcagattcagaatcacatgaagaattag 780
Query: 781 aatcaggatcagaagaagaagaagaacaacaacaacaaccaaaagttacattgttatcat 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 aatcaggatcagaagaagaagaagaacaacaacaacaaccaaaagttacattgttatcat 840
Query: 841 cttcatttactcccccatc 859 ||||||||||||||||||| Sbjct: 841 cttcatttactcccccatc 859
Score = 852 bits (430), Expect = 0.0 Identities = 430/430 (100%) Strand = Plus / Plus
Query: 922 ttgctcctccaaaacctgaaaatacatcaacaccaacatcatcaatctttggatcattta 981 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 922 ttgctcctccaaaacctgaaaatacatcaacaccaacatcatcaatctttggatcattta 981
Query: 982 gttctcaaccaagtggtggtggtatttcagcatttggaccagtttctagtaattcatcat 1041 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 982 gttctcaaccaagtggtggtggtatttcagcatttggaccagtttctagtaattcatcat 1041
Query: 1042 cgtctccatttggaagtgcatttggaagctcattcggttcaacaacaattccatcatttg 1101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1042 cgtctccatttggaagtgcatttggaagctcattcggttcaacaacaattccatcatttg 1101
Query: 1102 gacaatctcaagttaatccattaacaatcaatccaacctcaacttctccaacaccagtat 1161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1102 gacaatctcaagttaatccattaacaatcaatccaacctcaacttctccaacaccagtat 1161
Query: 1162 ttggaggttcaactacctctcaattctcatcatcatcaccagcaccaattttcggctcaa 1221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1162 ttggaggttcaactacctctcaattctcatcatcatcaccagcaccaattttcggctcaa 1221
Query: 1222 ctgcaactattaaaacatttggtgatttatcaaaatcatcctcatcaaataatgaaaata 1281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1222 ctgcaactattaaaacatttggtgatttatcaaaatcatcctcatcaaataatgaaaata 1281
Query: 1282 aagaccaaccatcatcatcaccttcaaaaccatcaccatcaccatcaaatccaacttttg 1341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1282 aagaccaaccatcatcatcaccttcaaaaccatcaccatcaccatcaaatccaacttttg 1341
Query: 1342 aatctattaa 1351 |||||||||| Sbjct: 1342 aatctattaa 1351
Score = 525 bits (265), Expect = e-148 Identities = 312/319 (97%) Strand = Plus / Plus
Query: 1898 ctaaacaatcaattgaatctgaatctgataaaaaagaagatgaaatggaaaaagaatttt 1957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1898 ctaaacaatcaattgaatctgaatctgataaaaaagaagatgaaatggaaaaagaatttt 1957
Query: 1958 caagaattgaagaaactataaaaccaaacnnnnnnncaaccaataaagatgaaaaagatc 2017 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1958 caagaattgaagaaactataaaaccaaactttttttcaaccaataaagatgaaaaagatc 2017
Query: 2018 aagaaaccaaagaagataatggcaacagtgacaacaacnnnnnnnnnngaaacacaacgg 2077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2018 aagaaaccaaagaagataatggcaacagtgacaacaacnnnnnnnnnngaaacacaacgg 2077
Query: 2078 ccagcacaggaacacaccgacccccaccggaaggcagccggaagccaacggacaaacaac 2137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2078 ccagcacaggaacacaccgacccccaccggaaggcagccggaagccaacggacaaacaac 2137
Query: 2138 gaacccacacgggacaacacaagcgaacccacggacanccaacccaaaccccaacaccac 2197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2138 gaacccacacgggacaacacaagcgaacccacggacanccaacccaaaccccaacaccac 2197
Query: 2198 caacaccagtagttggagg 2216 ||||||||||||||||||| Sbjct: 2198 caacaccagtagttggagg 2216
Score = 383 bits (193), Expect = e-105 Identities = 208/208 (100%) Strand = Plus / Plus
Query: 2281 aaaacacccggagacctagcaaaaacacccacngcaaataagggggacaaagaccaacca 2340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2281 aaaacacccggagacctagcaaaaacacccacngcaaataagggggacaaagaccaacca 2340
Query: 2341 tcatcatcaccatcaccaacaaaaccaacgcctgaatctaccaccaaagaaganaaagct 2400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2341 tcatcatcaccatcaccaacaaaaccaacgcctgaatctaccaccaaagaaganaaagct 2400
Query: 2401 gataatgttgaagacaaaaccgacnaaatagaagggnanaaagaagatagtgaagatgag 2460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2401 gataatgttgaagacaaaaccgacnaaatagaagggnanaaagaagatagtgaagatgag 2460
Query: 2461 aaagttatcactgaagacacaaataacc 2488 |||||||||||||||||||||||||||| Sbjct: 2461 aaagttatcactgaagacacaaataacc 2488
Score = 77.8 bits (39), Expect = 8e-14 Identities = 39/39 (100%) Strand = Plus / Plus
Query: 1717 ctttagaagaaaccaaacaatcaattgaatcttgataaa 1755 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1717 ctttagaagaaaccaaacaatcaattgaatcttgataaa 1755
Score = 69.9 bits (35), Expect = 2e-11 Identities = 35/35 (100%) Strand = Plus / Plus
Query: 1609 ctttggaagaaactaaacaatcaattgaatctgat 1643 ||||||||||||||||||||||||||||||||||| Sbjct: 1609 ctttggaagaaactaaacaatcaattgaatctgat 1643
Score = 67.9 bits (34), Expect = 7e-11 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 1501 cattagaagaaactaaacaatcaattgaatctga 1534 |||||||||||||||||||||||||||||||||| Sbjct: 1501 cattagaagaaactaaacaatcaattgaatctga 1534
Score = 60.0 bits (30), Expect = 2e-08 Identities = 30/30 (100%) Strand = Plus / Plus
Query: 1505 agaagaaactaaacaatcaattgaatctga 1534 |||||||||||||||||||||||||||||| Sbjct: 1890 agaagaaactaaacaatcaattgaatctga 1919
Score = 60.0 bits (30), Expect = 2e-08 Identities = 30/30 (100%) Strand = Plus / Plus
Query: 1614 gaagaaactaaacaatcaattgaatctgat 1643 |||||||||||||||||||||||||||||| Sbjct: 1506 gaagaaactaaacaatcaattgaatctgat 1535
Score = 58.0 bits (29), Expect = 7e-08 Identities = 29/29 (100%) Strand = Plus / Plus
Query: 1614 gaagaaactaaacaatcaattgaatctga 1642 ||||||||||||||||||||||||||||| Sbjct: 1891 gaagaaactaaacaatcaattgaatctga 1919
Score = 58.0 bits (29), Expect = 7e-08 Identities = 29/29 (100%) Strand = Plus / Plus
Query: 1506 gaagaaactaaacaatcaattgaatctga 1534 ||||||||||||||||||||||||||||| Sbjct: 1614 gaagaaactaaacaatcaattgaatctga 1642
Score = 52.0 bits (26), Expect = 4e-06 Identities = 29/30 (96%) Strand = Plus / Plus
Query: 1719 ttagaagaaaccaaacaatcaattgaatct 1748 ||||||||||| |||||||||||||||||| Sbjct: 1503 ttagaagaaactaaacaatcaattgaatct 1532
Score = 52.0 bits (26), Expect = 4e-06 Identities = 29/30 (96%) Strand = Plus / Plus
Query: 1503 ttagaagaaactaaacaatcaattgaatct 1532 ||||||||||| |||||||||||||||||| Sbjct: 1719 ttagaagaaaccaaacaatcaattgaatct 1748
Score = 52.0 bits (26), Expect = 4e-06 Identities = 26/26 (100%) Strand = Plus / Plus
Query: 1917 tgaatctgataaaaaagaagatgaaa 1942 |||||||||||||||||||||||||| Sbjct: 1634 tgaatctgataaaaaagaagatgaaa 1659
Score = 48.1 bits (24), Expect = 7e-05 Identities = 30/32 (93%) Strand = Plus / Plus
Query: 1609 ctttggaagaaactaaacaatcaattgaatct 1640 |||| |||||||| |||||||||||||||||| Sbjct: 1717 ctttagaagaaaccaaacaatcaattgaatct 1748
Score = 48.1 bits (24), Expect = 7e-05 Identities = 30/32 (93%) Strand = Plus / Plus
Query: 1717 ctttagaagaaaccaaacaatcaattgaatct 1748 |||| |||||||| |||||||||||||||||| Sbjct: 1609 ctttggaagaaactaaacaatcaattgaatct 1640
Score = 48.1 bits (24), Expect = 7e-05 Identities = 27/28 (96%) Strand = Plus / Plus
Query: 1721 agaagaaaccaaacaatcaattgaatct 1748 ||||||||| |||||||||||||||||| Sbjct: 1890 agaagaaactaaacaatcaattgaatct 1917
Score = 46.1 bits (23), Expect = 3e-04 Identities = 38/43 (88%), Gaps = 5/43 (11%) Strand = Plus / Plus
Query: 1900 aaacaatcaattgaatctgaatctgataaaaaagaagatgaaa 1942 |||||||||||||||||| |||||||||||||||||||| Sbjct: 1731 aaacaatcaattgaatct-----tgataaaaaagaagatgaaa 1768
Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 1281 aaagaccaaccatcatcatcacc 1303 ||||||||||||||||||||||| Sbjct: 2329 aaagaccaaccatcatcatcacc 2351
Score = 46.1 bits (23), Expect = 3e-04 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 2329 aaagaccaaccatcatcatcacc 2351 ||||||||||||||||||||||| Sbjct: 1281 aaagaccaaccatcatcatcacc 1303
Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%) Strand = Plus / Plus
Query: 1898 ctaaacaatcaattgaatctga 1919 |||||||||||||||||||||| Sbjct: 1621 ctaaacaatcaattgaatctga 1642
Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%) Strand = Plus / Plus
Query: 1898 ctaaacaatcaattgaatctga 1919 |||||||||||||||||||||| Sbjct: 1513 ctaaacaatcaattgaatctga 1534
Score = 42.1 bits (21), Expect = 0.004 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1917 tgaatctgataaaaaagaaga 1937 ||||||||||||||||||||| Sbjct: 1526 tgaatctgataaaaaagaaga 1546
Score = 36.2 bits (18), Expect = 0.26 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1149 ccaacaccagtatttggaggttcaac 1174 |||||||||||| |||||||| |||| Sbjct: 2197 ccaacaccagtagttggaggtccaac 2222
Score = 34.2 bits (17), Expect = 1.0 Identities = 23/25 (92%) Strand = Plus / Plus
Query: 2345 catcaccatcaccaacaaaaccaac 2369 |||||||||||||| |||| ||||| Sbjct: 1312 catcaccatcaccatcaaatccaac 1336
Score = 34.2 bits (17), Expect = 1.0 Identities = 23/25 (92%) Strand = Plus / Plus
Query: 1312 catcaccatcaccatcaaatccaac 1336 |||||||||||||| |||| ||||| Sbjct: 2345 catcaccatcaccaacaaaaccaac 2369
Score = 34.2 bits (17), Expect = 1.0 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 1189 catcatcatcaccagcaccaa 1209 |||||||||||||| |||||| Sbjct: 2339 catcatcatcaccatcaccaa 2359
Score = 34.2 bits (17), Expect = 1.0 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 2339 catcatcatcaccatcaccaa 2359 |||||||||||||| |||||| Sbjct: 1189 catcatcatcaccagcaccaa 1209
Score = 32.2 bits (16), Expect = 4.1 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 1309 aaccatcaccatcaccatca 1328 |||||||| ||||||||||| Sbjct: 2336 aaccatcatcatcaccatca 2355
Score = 32.2 bits (16), Expect = 4.1 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 2336 aaccatcatcatcaccatca 2355 |||||||| ||||||||||| Sbjct: 1309 aaccatcaccatcaccatca 1328
Score = 32.2 bits (16), Expect = 4.1 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 2197 ccaacaccagtagttggagg 2216 |||||||||||| ||||||| Sbjct: 1149 ccaacaccagtatttggagg 1168
>Contig-U15936-1 (Contig-U15936-1Q) /CSM_Contig/Contig-U15936-1Q.Seq.d Length = 2161
Score = 672 bits (339), Expect = 0.0 Identities = 342/343 (99%) Strand = Plus / Plus
Query: 517 gcagtaatactattactttcaacgcaccaactttattcggtaacaataacaatagtaatc 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 gcagtaatactattactttcaacgcaccaactttattcggtaacaataacaatagtaatc 540
Query: 577 catcaaacttatttggcagtggtaataacaattcttcatcactatttggtggcaattcaa 636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 catcaaacttatttggcagtggtaataacaattcttcatcactatttggtggcaattcaa 600
Query: 637 caaccatccaaccatcgcaatcattatttggaactaagtcaactgaaaccaaatctgatg 696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 caaccatccaaccatcgcaatcattatttggaactaagtcaactgaaaccaaatctgatg 660
Query: 697 acccaatgtcgcttaaagaaatgtcaaatacaattcaagataatgatgctcaaaattcag 756 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 661 acccaatgtcgcttaaagaaatgtcaaatacaattcaagataatgatgatcaaaattcag 720
Query: 757 attcagaatcacatgaagaattagaatcaggatcagaagaagaagaagaacaacaacaac 816 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 attcagaatcacatgaagaattagaatcaggatcagaagaagaagaagaacaacaacaac 780
Query: 817 aaccaaaagttacattgttatcatcttcatttactcccccatc 859 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 aaccaaaagttacattgttatcatcttcatttactcccccatc 823
Score = 412 bits (208), Expect = e-114 Identities = 260/278 (93%) Strand = Plus / Plus
Query: 1074 ttcggttcaacaacaattccatcatttggacaatctcaagttaatccattaacaatcaat 1133 ||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1083 ttcggttcagcatcaataccatcatttggacaatctcaagttaacccattaacaatcaat 1142
Query: 1134 ccaacctcaacttctccaacaccagtatttggaggttcaactacctctcaattctcatca 1193 ||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||| Sbjct: 1143 ccaacttcaacttctccaacagccgtatttggaggttcaactacttctcaattctcatca 1202
Query: 1194 tcatcaccagcaccaattttcggctcaactgcaactattaaaacatttggtgatttatca 1253 |||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 1203 tcatcaccagcaccaatttttggttcaactgcaactattaaaacatttggcgatttatcg 1262
Query: 1254 aaatcatcctcatcaaataatgaaaataaagaccaaccatcatcatcaccttcaaaacca 1313 ||| |||| | ||||||||||||||||||||||||| | |||||||||| |||||||||| Sbjct: 1263 aaaccatcnttatcaaataatgaaaataaagaccaaacttcatcatcacnttcaaaacca 1322
Query: 1314 tcaccatcaccatcaaatccaacttttgaatctattaa 1351 |||||||||||||||||||||||||||||||||||||| Sbjct: 1323 tcaccatcaccatcaaatccaacttttgaatctattaa 1360
Score = 246 bits (124), Expect = 1e-64 Identities = 135/138 (97%), Gaps = 3/138 (2%) Strand = Plus / Plus
Query: 922 ttgctcctccaaaacctgaaaatacatcaacaccaacatcatcaatctttggatcattta 981 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 ttgctcctccaaaacctgaaaatacatcaacaccaacatcatcaatctttggatcattta 1005
Query: 982 gttctcaaccaagtggtggtggtatttcagcatttggaccagtttctagtaattcatcat 1041 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 gttctcaaccaagtggtggtggtatttcagcatttggaccagtttctagtaattcatca- 1064
Query: 1042 cgtctccatttggaagtg 1059 |||||||||||||||| Sbjct: 1065 --tctccatttggaagtg 1080
Score = 153 bits (77), Expect = 2e-36 Identities = 106/116 (91%), Gaps = 6/116 (5%) Strand = Plus / Plus
Query: 86 tattactttcaatgcaccaaatatattcggtaacaata------gtaatccatcaaactt 139 |||||||||||| ||||||| | ||||||||||||||| |||||||||||||||| Sbjct: 491 tattactttcaacgcaccaactttattcggtaacaataacaatagtaatccatcaaactt 550
Query: 140 atttggcagtggtaataacaattcttcatcactatttggtggtaattcaacaacca 195 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 551 atttggcagtggtaataacaattcttcatcactatttggtggcaattcaacaacca 606
Score = 123 bits (62), Expect = 1e-27 Identities = 79/87 (90%) Strand = Plus / Plus
Query: 1900 aaacaatcaattgaatctgaatctgataaaaaagaagatgaaatggaaaaagaattttca 1959 |||||||||||||||||||||||||||| | |||| ||| ||||||||| ||||||| Sbjct: 1744 aaacaatcaattgaatctgaatctgatananaagangatnnnntggaaaaagtattttca 1803
Query: 1960 agaattgaagaaactataaaaccaaac 1986 ||||||||||||||||||||||||||| Sbjct: 1804 agaattgaagaaactataaaaccaaac 1830
Score = 69.9 bits (35), Expect = 2e-11 Identities = 35/35 (100%) Strand = Plus / Plus
Query: 1609 ctttggaagaaactaaacaatcaattgaatctgat 1643 ||||||||||||||||||||||||||||||||||| Sbjct: 1513 ctttggaagaaactaaacaatcaattgaatctgat 1547
Score = 67.9 bits (34), Expect = 7e-11 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 1501 cattagaagaaactaaacaatcaattgaatctga 1534 |||||||||||||||||||||||||||||||||| Sbjct: 1940 cattagaagaaactaaacaatcaattgaatctga 1973
Score = 61.9 bits (31), Expect = 5e-09 Identities = 31/31 (100%) Strand = Plus / Plus
Query: 1717 ctttagaagaaaccaaacaatcaattgaatc 1747 ||||||||||||||||||||||||||||||| Sbjct: 1621 ctttagaagaaaccaaacaatcaattgaatc 1651
Score = 60.0 bits (30), Expect = 2e-08 Identities = 30/30 (100%) Strand = Plus / Plus
Query: 1614 gaagaaactaaacaatcaattgaatctgat 1643 |||||||||||||||||||||||||||||| Sbjct: 1945 gaagaaactaaacaatcaattgaatctgat 1974
Score = 58.0 bits (29), Expect = 7e-08 Identities = 29/29 (100%) Strand = Plus / Plus
Query: 1506 gaagaaactaaacaatcaattgaatctga 1534 ||||||||||||||||||||||||||||| Sbjct: 1518 gaagaaactaaacaatcaattgaatctga 1546
Score = 56.0 bits (28), Expect = 3e-07 Identities = 31/32 (96%) Strand = Plus / Plus
Query: 1717 ctttagaagaaaccaaacaatcaattgaatct 1748 |||||||||||| ||||||||||||||||||| Sbjct: 1730 ctttagaagaaatcaaacaatcaattgaatct 1761
Score = 52.0 bits (26), Expect = 4e-06 Identities = 29/30 (96%) Strand = Plus / Plus
Query: 1719 ttagaagaaaccaaacaatcaattgaatct 1748 ||||||||||| |||||||||||||||||| Sbjct: 1942 ttagaagaaactaaacaatcaattgaatct 1971
Score = 52.0 bits (26), Expect = 4e-06 Identities = 26/26 (100%) Strand = Plus / Plus
Query: 1917 tgaatctgataaaaaagaagatgaaa 1942 |||||||||||||||||||||||||| Sbjct: 1538 tgaatctgataaaaaagaagatgaaa 1563
Score = 52.0 bits (26), Expect = 4e-06 Identities = 26/26 (100%) Strand = Plus / Plus
Query: 1917 tgaatctgataaaaaagaagatgaaa 1942 |||||||||||||||||||||||||| Sbjct: 1965 tgaatctgataaaaaagaagatgaaa 1990
Score = 50.1 bits (25), Expect = 2e-05 Identities = 28/29 (96%) Strand = Plus / Plus
Query: 1503 ttagaagaaactaaacaatcaattgaatc 1531 ||||||||||| ||||||||||||||||| Sbjct: 1623 ttagaagaaaccaaacaatcaattgaatc 1651
Score = 48.1 bits (24), Expect = 7e-05 Identities = 30/32 (93%) Strand = Plus / Plus
Query: 1503 ttagaagaaactaaacaatcaattgaatctga 1534 |||||||||||||||||| |||||||| |||| Sbjct: 2050 ttagaagaaactaaacaaccaattgaaactga 2081
Score = 48.1 bits (24), Expect = 7e-05 Identities = 30/32 (93%) Strand = Plus / Plus
Query: 1717 ctttagaagaaaccaaacaatcaattgaatct 1748 |||| |||||||| |||||||||||||||||| Sbjct: 1513 ctttggaagaaactaaacaatcaattgaatct 1544
Score = 48.1 bits (24), Expect = 7e-05 Identities = 30/32 (93%) Strand = Plus / Plus
Query: 1503 ttagaagaaactaaacaatcaattgaatctga 1534 |||||||||| |||||||||||||||||||| Sbjct: 1732 ttagaagaaatcaaacaatcaattgaatctga 1763
Score = 46.1 bits (23), Expect = 3e-04 Identities = 29/31 (93%) Strand = Plus / Plus
Query: 1609 ctttggaagaaactaaacaatcaattgaatc 1639 |||| |||||||| ||||||||||||||||| Sbjct: 1621 ctttagaagaaaccaaacaatcaattgaatc 1651
Score = 46.1 bits (23), Expect = 3e-04 Identities = 32/35 (91%) Strand = Plus / Plus
Query: 1609 ctttggaagaaactaaacaatcaattgaatctgat 1643 |||| ||||||||||||||| |||||||| ||||| Sbjct: 2048 ctttagaagaaactaaacaaccaattgaaactgat 2082
Score = 44.1 bits (22), Expect = 0.001 Identities = 31/34 (91%) Strand = Plus / Plus
Query: 1609 ctttggaagaaactaaacaatcaattgaatctga 1642 |||| ||||||| |||||||||||||||||||| Sbjct: 1730 ctttagaagaaatcaaacaatcaattgaatctga 1763
Score = 44.1 bits (22), Expect = 0.001 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 1917 tgaatctgataaaaaagaagatgaaa 1942 |||| ||||||||||||||||||||| Sbjct: 2073 tgaaactgataaaaaagaagatgaaa 2098
Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%) Strand = Plus / Plus
Query: 1898 ctaaacaatcaattgaatctga 1919 |||||||||||||||||||||| Sbjct: 1525 ctaaacaatcaattgaatctga 1546
Score = 44.1 bits (22), Expect = 0.001 Identities = 22/22 (100%) Strand = Plus / Plus
Query: 1898 ctaaacaatcaattgaatctga 1919 |||||||||||||||||||||| Sbjct: 1952 ctaaacaatcaattgaatctga 1973
Score = 42.1 bits (21), Expect = 0.004 Identities = 27/29 (93%) Strand = Plus / Plus
Query: 1717 ctttagaagaaaccaaacaatcaattgaa 1745 ||||||||||||| |||||| |||||||| Sbjct: 2048 ctttagaagaaactaaacaaccaattgaa 2076
Score = 38.2 bits (19), Expect = 0.066 Identities = 37/43 (86%), Gaps = 5/43 (11%) Strand = Plus / Plus
Query: 1900 aaacaatcaattgaatctgaatctgataaaaaagaagatgaaa 1942 ||||||||||||||||| | ||||||||||||||||||| Sbjct: 1635 aaacaatcaattgaatcgg-----gataaaaaagaagatgaaa 1672
Score = 34.2 bits (17), Expect = 1.0 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 2339 catcatcatcaccatcaccaa 2359 |||||||||||||| |||||| Sbjct: 1198 catcatcatcaccagcaccaa 1218
Score = 34.2 bits (17), Expect = 1.0 Identities = 23/25 (92%) Strand = Plus / Plus
Query: 2345 catcaccatcaccaacaaaaccaac 2369 |||||||||||||| |||| ||||| Sbjct: 1321 catcaccatcaccatcaaatccaac 1345
Score = 32.2 bits (16), Expect = 4.1 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 2336 aaccatcatcatcaccatca 2355 |||||||| ||||||||||| Sbjct: 1318 aaccatcaccatcaccatca 1337
>Contig-U15158-1 (Contig-U15158-1Q) /CSM_Contig/Contig-U15158-1Q.Seq.d Length = 774
Score = 61.9 bits (31), Expect = 5e-09 Identities = 61/71 (85%) Strand = Plus / Plus
Query: 1901 aacaatcaattgaatctgaatctgataaaaaagaagatgaaatggaaaaagaattttcaa 1960 ||||||| ||||||||||| |||||||||| |||| |||||||||| | ||||||||| Sbjct: 65 aacaatctattgaatctgagtctgataaaagagaaaatgaaatggaggataaattttcaa 124
Query: 1961 gaattgaagaa 1971 ||||||||| Sbjct: 125 agattgaagaa 135
Score = 48.1 bits (24), Expect = 7e-05 Identities = 50/56 (89%), Gaps = 2/56 (3%) Strand = Plus / Plus
Query: 1904 aatcaattgaatctgaa-tctgataaaaaagaagat-gaaatggaaaaagaatttt 1957 ||||||| ||||||||| ||||||||||||| ||| | ||||||||||||||||| Sbjct: 335 aatcaatcgaatctgaaatctgataaaaaaggagaaagtaatggaaaaagaatttt 390
Database: CSM Posted date: Jun 21, 2004 1:35 PM Number of letters in database: 8,075,542 Number of sequences in database: 8402 Lambda K H 1.37 0.711 1.31
Gapped Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 66,376 Number of Sequences: 8402 Number of extensions: 66376 Number of successful extensions: 17257 Number of sequences better than 10.0: 837 length of query: 2570 length of database: 8,075,542 effective HSP length: 17 effective length of query: 2553 effective length of database: 7,932,708 effective search space: 20252203524 effective search space used: 20252203524 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 16 (32.2 bits)
|
dna update |
2009. 3.11 |
Homology vs DNA |
Query= Contig-U16080-1 (Contig-U16080-1Q) /CSM_Contig/Contig-U16080-1Q.Seq.d (2570 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ333867) Dictyostelium discoideum cDNA clone:dda44g07, 5' ... 666 0.0 6 (BJ389898) Dictyostelium discoideum cDNA clone:dds20b14, 5' ... 718 0.0 5 (BJ408775) Dictyostelium discoideum cDNA clone:dds46m22, 3' ... 644 0.0 2 (BJ397610) Dictyostelium discoideum cDNA clone:dds46m22, 5' ... 416 0.0 4 (BJ402100) Dictyostelium discoideum cDNA clone:dds20b14, 3' ... 315 e-155 6 (AU040063) Dictyostelium discoideum slug cDNA, clone SLA341. 333 e-121 2 (BJ369742) Dictyostelium discoideum cDNA clone:ddc51i13, 5' ... 218 e-119 4 (BJ385268) Dictyostelium discoideum cDNA clone:ddc54k09, 3' ... 301 8e-84 4 (AU060305) Dictyostelium discoideum slug cDNA, clone SLJ127. 244 1e-59 1 (AU053842) Dictyostelium discoideum slug cDNA, clone SLJ781. 174 2e-46 2 (AU060456) Dictyostelium discoideum slug cDNA, clone SLJ781. 123 3e-23 1 (BB930356) Trifolium pratense cDNA clone:RCC01987. 44 0.003 3 (BB929152) Trifolium pratense cDNA clone:RCC00516. 44 0.004 3 (BH327522) CH230-174H21.TV CHORI-230 Segment 1 Rattus norveg... 44 0.006 3 (BZ164233) CH230-246O13.TJB CHORI-230 Segment 2 Rattus norve... 40 0.007 3 (CQ346213) Sequence 20307 from Patent WO0157275. 34 0.007 3 (CQ309605) Sequence 20710 from Patent WO0186003. 34 0.007 3 (CQ271971) Sequence 20232 from Patent WO0157277. 34 0.007 3 (CQ234274) Sequence 21113 from Patent WO0157273. 34 0.007 3 (CQ185016) Sequence 16412 from Patent WO0157274. 34 0.007 3 (CQ150932) Sequence 20954 from Patent WO0157276. 34 0.007 3 (CQ112113) Sequence 20972 from Patent WO0157272. 34 0.007 3 (CQ079774) Sequence 15574 from Patent WO0157278. 34 0.007 3 (CQ333548) Sequence 7642 from Patent WO0157275. 34 0.008 3 (CQ297189) Sequence 8294 from Patent WO0186003. 34 0.008 3 (CQ259463) Sequence 7724 from Patent WO0157277. 34 0.008 3 (CQ221368) Sequence 8207 from Patent WO0157273. 34 0.008 3 (CQ175158) Sequence 6554 from Patent WO0157274. 34 0.008 3 (CQ137994) Sequence 8016 from Patent WO0157276. 34 0.008 3 (CQ099062) Sequence 7921 from Patent WO0157272. 34 0.008 3 (CQ070594) Sequence 6394 from Patent WO0157278. 34 0.008 3 (EB324296) CNSN01-F-102315-501 Normalized CNS library (juven... 40 0.011 3 (DQ307242) Penaeus monodon microsatellite 10CG sequence. 44 0.013 2 (L30166) Human STS UT7983, sequence tagged site. 34 0.014 3 (CV413566) RC2-HT0252-271099-017-d11 HT0252 Homo sapiens cDN... 36 0.015 4 (CQ341000) Sequence 15094 from Patent WO0157275. 40 0.017 3 (CQ303669) Sequence 14774 from Patent WO0186003. 40 0.017 3 (CQ266718) Sequence 14979 from Patent WO0157277. 40 0.017 3 (CQ228562) Sequence 15401 from Patent WO0157273. 40 0.017 3 (CQ205183) Sequence 7460 from Patent WO0157271. 40 0.017 3 (CQ180806) Sequence 12202 from Patent WO0157274. 40 0.017 3 (CQ145368) Sequence 15390 from Patent WO0157276. 40 0.017 3 (CQ106714) Sequence 15573 from Patent WO0157272. 40 0.017 3 (CQ075733) Sequence 11533 from Patent WO0157278. 40 0.017 3 (CQ056467) Sequence 7287 from Patent WO0157270. 40 0.017 3 (AG300331) Mus musculus molossinus DNA, clone:MSMg01-079C24.... 44 0.019 3 (CN807759) HDAH10E03.F Leech Haementeria depressa library HD... 38 0.021 3 (ED557291) MUGQ_CH252P134B17T7_CN121_079 CHORI-252 Vervet Mo... 44 0.024 3 (FI177524) MUGQ_CH252P251H04T7_CN507_010 CHORI-252 Vervet Mo... 44 0.027 3 (CQ338942) Sequence 13036 from Patent WO0157275. 44 0.029 2 (CQ301738) Sequence 12843 from Patent WO0186003. 44 0.029 2 (CQ264650) Sequence 12911 from Patent WO0157277. 44 0.029 2 (CQ226508) Sequence 13347 from Patent WO0157273. 44 0.029 2 (CQ203146) Sequence 5423 from Patent WO0157271. 44 0.029 2 (CQ178803) Sequence 10199 from Patent WO0157274. 44 0.029 2 (CQ143311) Sequence 13333 from Patent WO0157276. 44 0.029 2 (CQ104603) Sequence 13462 from Patent WO0157272. 44 0.029 2 (CQ073715) Sequence 9515 from Patent WO0157278. 44 0.029 2 (CQ054473) Sequence 5293 from Patent WO0157270. 44 0.029 2 (BB929383) Trifolium pratense cDNA clone:RCC00809. 44 0.033 3 (BB930777) Trifolium pratense cDNA clone:RCC02481. 44 0.033 3 (BB930324) Trifolium pratense cDNA clone:RCC01938. 44 0.033 3 (BB929141) Trifolium pratense cDNA clone:RCC00504. 44 0.033 3 (AQ171567) HS_3163_B1_C02_MR CIT Approved Human Genomic Sper... 44 0.035 2 (CQ326130) Sequence 224 from Patent WO0157275. 44 0.040 2 (CQ289137) Sequence 242 from Patent WO0186003. 44 0.040 2 (CQ251990) Sequence 251 from Patent WO0157277. 44 0.040 2 (CQ213410) Sequence 249 from Patent WO0157273. 44 0.040 2 (CQ197952) Sequence 229 from Patent WO0157271. 44 0.040 2 (CQ168836) Sequence 230 from Patent WO0157274. 44 0.040 2 (CQ130211) Sequence 233 from Patent WO0157276. 44 0.040 2 (CQ091381) Sequence 240 from Patent WO0157272. 44 0.040 2 (CQ064436) Sequence 236 from Patent WO0157278. 44 0.040 2 (CQ049410) Sequence 230 from Patent WO0157270. 44 0.040 2 (CT582945) Pinus pinaster bud EST. 46 0.046 2 (CE170732) tigr-gss-dog-17000326655266 Dog Library Canis lup... 40 0.049 2 (CF605814) RADIC01_001570 Grape Root pSPORT1 Library Vitis v... 34 0.050 4 (FE139367) LV_HP_RA34N22f Litopenaeus vannamei hepatopancrea... 44 0.051 2 (BB931008) Trifolium pratense cDNA clone:RCC02762. 44 0.052 3 (EF715437) Mus musculus C57BL/6N IST10065A4BBR1 gene trap em... 44 0.052 2 (BH275362) CH230-177P15.TV CHORI-230 Segment 1 Rattus norveg... 44 0.053 2 (AL049708) Human DNA sequence from clone XX-PRYM736A3A on ch... 48 0.054 2 (CE013424) tigr-gss-dog-17000321075157 Dog Library Canis lup... 40 0.054 2 (DY664342) SA_MF_09_G01 SA_MF Senecio aethnensis cDNA 5', mR... 44 0.054 2 (G93166) S209P6268FG7.T0 C3H/HeJ Mus musculus STS genomic, s... 44 0.055 2 (EY364270) CAWZ9239.fwd CAWZ Helobdella robusta Primary Late... 44 0.055 2 (CT120512) Sus scrofa genomic clone PigE-122D21, genomic sur... 38 0.058 3 (CE162627) tigr-gss-dog-17000371439200 Dog Library Canis lup... 44 0.063 2 (AG317772) Mus musculus molossinus DNA, clone:MSMg01-102L05.... 44 0.063 2 (AL184136) Tetraodon nigroviridis genome survey sequence T7 ... 44 0.068 2 (AF046247) AF046247 Mus musculus 129Sv/Ev Mus musculus cDNA ... 40 0.073 3 (ER986607) CMHD-GT_436A1-3 GTL_R1_pNMDi4 Mus musculus cDNA c... 40 0.074 3 (EY388143) CAXA7140.fwd CAXA Helobdella robusta Subtracted L... 44 0.076 2 (GE571430) CCHT558.b1_L19.ab1 CCHT Niger Seed Guizotia abyss... 34 0.077 3 (GE049137) 454GmaGlobSeed791785 Soybean Seeds Containing Glo... 32 0.078 4 (AX647437) Sequence 1629 from Patent EP1270724. 36 0.11 5 (CQ328278) Sequence 2372 from Patent WO0157275. 40 0.11 3 (CQ291161) Sequence 2266 from Patent WO0186003. 40 0.11 3 (CQ254150) Sequence 2411 from Patent WO0157277. 40 0.11 3 (CQ215557) Sequence 2396 from Patent WO0157273. 40 0.11 3 (CQ200076) Sequence 2353 from Patent WO0157271. 40 0.11 3 (CQ170925) Sequence 2321 from Patent WO0157274. 40 0.11 3 (CQ132360) Sequence 2382 from Patent WO0157276. 40 0.11 3 (CQ093586) Sequence 2445 from Patent WO0157272. 40 0.11 3 (CQ066540) Sequence 2340 from Patent WO0157278. 40 0.11 3 (CQ051492) Sequence 2312 from Patent WO0157270. 40 0.11 3 (BQ793870) EST 2808 Veraison Grape berries Lambda Zap II Lib... 34 0.12 4 (BY534383) Mus musculus NOD-derived CD11c +ve dendritic cell... 44 0.13 2 (CE076003) tigr-gss-dog-17000324329877 Dog Library Canis lup... 44 0.13 2 (DH775032) Rattus norvegicus DNA, BAC clone: RNB1-361E21, 3'... 38 0.14 4 (AC176497) Strongylocentrotus purpuratus clone R3-3072G14, W... 40 0.15 6 (DW543533) EST_ssal_rgb2_7952 rgb2 Salmo salar cDNA clone ss... 36 0.16 3 (AC011152) Homo sapiens clone RP11-7H4, WORKING DRAFT SEQUEN... 44 0.17 2 (EJ181630) 1092344127358 Global-Ocean-Sampling_GS-27-01-01-1... 44 0.17 2 (BZ229613) CH230-305D20.TJ CHORI-230 Segment 2 Rattus norveg... 44 0.18 2 (EY307847) CAWX20698.rev CAWX Helobdella robusta Primary Ear... 34 0.19 3 (AY325245) Rattus norvegicus Cc2-5 mRNA, complete cds. 44 0.19 2 (DR383963) 11441399 CERES-AN65 Arabidopsis thaliana cDNA clo... 34 0.20 3 (CR163825) Reverse strand read from insert in 5'HPRT inserti... 36 0.20 3 (EY303520) CAWX16757.rev CAWX Helobdella robusta Primary Ear... 44 0.20 2 (BB086955) Mus musculus 12 days embryo embryonic body betwee... 44 0.21 2 (AY753023) Penaeus monodon clone t2801 microsatellite sequence. 44 0.21 2 (EY303521) CAWX16757.fwd CAWX Helobdella robusta Primary Ear... 44 0.21 2 (CE290415) tigr-gss-dog-17000333845940 Dog Library Canis lup... 36 0.21 3 (AP001470) Homo sapiens genomic DNA, chromosome 21 clone:PCR... 44 0.21 2 (BB101504) Mus musculus 12 days embryo embryonic body betwee... 44 0.21 2 (FC843034) CBHN2333.fwd CBHN Metridium senile tentacle Metri... 42 0.22 2 (EY296273) CAWX12715.rev CAWX Helobdella robusta Primary Ear... 34 0.22 3 (DH633832) Rattus norvegicus DNA, BAC clone: RNB1-170P01, 3'... 44 0.22 2 (FF611839) G825P5162RH12.T0 Acorn worm normalized gastrula p... 38 0.22 3 (GE605799) CCPX2877.b1_J23.ab1 CCP(UWX) Globe Artichoke Cyna... 46 0.23 2 (DT265028) JGI_CAAU13438.fwd CAAU Pimephales promelas brain ... 40 0.24 2 (EY309749) CAWX21767.rev CAWX Helobdella robusta Primary Ear... 44 0.24 2 (AZ608659) 1M0433G04F Mouse 10kb plasmid UUGC1M library Mus ... 36 0.25 3 (EL487529) CHUS2751.b1_M15.ab1 CHU(LMS) puzzle sunflower Hel... 34 0.25 3 (EY309750) CAWX21767.fwd CAWX Helobdella robusta Primary Ear... 44 0.25 2 (EB555841) AGENCOURT_51803401 D. virilis EST Drosophila viri... 38 0.25 3 (AC141176) Rattus norvegicus clone CH230-428G14, WORKING DRA... 48 0.25 4 (AB030033) Dictyostelium discoideum gene for AmiB, complete ... 32 0.26 6 (DT299974) JGI_CAAW10064.fwd CAAW Pimephales promelas testis... 40 0.26 2 (AG988822) Hemicentrotus pulcherrimus BAC clone: BUB1-12F09_... 44 0.27 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 0.27 14 (FD716105) CAAA2012.rev CAAA Petromyzon marinus Petromyzon m... 48 0.27 4 (GE606498) CCPX3593.b1_B11.ab1 CCP(UWX) Globe Artichoke Cyna... 46 0.27 2 (GD681757) 454GmaGlobSeed424406 Soybean Seeds Containing Glo... 32 0.28 4 (BZ190079) CH230-278P4.TV CHORI-230 Segment 2 Rattus norvegi... 38 0.29 3 (DU237878) 1098574152823 CHORI-243 Ovis aries genomic clone ... 40 0.29 2 (EY327203) CAWY12459.fwd CAWY Helobdella robusta Subtracted ... 40 0.30 3 (EY312663) CAWX24138.rev CAWX Helobdella robusta Primary Ear... 34 0.31 3 (EV486215) 095G10 Cotton Lambda Zap Express Library Gossypiu... 38 0.31 2 (EK766629) 1093017103857 Global-Ocean-Sampling_GS-33-01-01-1... 38 0.32 2 (BZ253576) CH230-499H15.TJ CHORI-230 Segment 2 Rattus norveg... 44 0.34 2 (FM172656) Oryzias latipes EST, clone M074--C11_091. 38 0.36 3 (EY337829) CAWY8594.fwd CAWY Helobdella robusta Subtracted E... 34 0.36 3 (AK155141) Mus musculus NOD-derived CD11c +ve dendritic cell... 44 0.36 2 (CC586704) CH240_384I7.T7 CHORI-240 Bos taurus genomic clone... 40 0.37 3 (AY143618) Amphipholis squamata clone AI1 microsatellite seq... 34 0.39 3 (AC177620) Strongylocentrotus purpuratus clone R3-1020P15, W... 42 0.42 6 (AC125255) Mus musculus chromosome 5, clone RP24-332C17, com... 50 0.42 1 (CR933104) Medicago truncatula chromosome 5 clone mth2-25b3,... 50 0.42 1 (AC128389) Rattus norvegicus clone CH230-137B13, WORKING DRA... 50 0.42 1 (AC107438) Rattus norvegicus clone CH230-160A14, *** SEQUENC... 50 0.42 1 (AC178616) Strongylocentrotus purpuratus clone R3-3021F5, WO... 50 0.42 1 (AC178282) Strongylocentrotus purpuratus clone R3-3093O17, W... 50 0.42 1 (AC176659) Strongylocentrotus purpuratus clone R3-3084G5, WO... 50 0.42 1 (EE441299) 6ETGS6H_UP_026_E10_04FEB2005_072 Brassica napus 6... 50 0.42 1 (DW068258) CLLY8022.b1_L14.ab1 CLL(XYZ) lettuce saligna Lact... 50 0.42 1 (FE488829) CAOT3175.fwd CAOT Selaginella moellendorffii mixe... 50 0.42 1 (FE484536) CAOT10071.rev CAOT Selaginella moellendorffii mix... 50 0.42 1 (FE442898) CAOS10729.rev CAOS Selaginella moellendorffii mix... 50 0.42 1 (FE438093) CAOP7839.rev CAOP Selaginella moellendorffii mixe... 50 0.42 1 (FE437660) CAOP7593.fwd CAOP Selaginella moellendorffii mixe... 50 0.42 1 (FE437659) CAOP7593.rev CAOP Selaginella moellendorffii mixe... 50 0.42 1 (EY147958) CBTN11047.g1_N02.ab1:P Triphysaria pusilla root t... 50 0.42 1 (EV159632) 0083494 Brassica napus Bud library Brassica napus... 50 0.42 1 (BF910948) CM1-UT0039-041100-436-e11 UT0039 Homo sapiens cDN... 34 0.43 3 (EA117033) Sequence 1217 from patent US 7205146. 40 0.45 2 (EB908803) 9179489 ZF31 Danio rerio cDNA clone 3255587, mRNA... 44 0.46 2 (BH501561) BOGOS73TR BOGO Brassica oleracea genomic clone BO... 40 0.47 2 (AC196636) Homo sapiens chromosome 19 PCR product, complete ... 44 0.48 2 (BI045684) MR3-FN0206-300101-004-h10 FN0206 Homo sapiens cDN... 38 0.48 2 (CB706639) AMGNNUC:SRPB2-00154-A2-A srpb2 (10220) Rattus nor... 44 0.48 2 (EC384037) PMAH-aaa91f02.g1 Lamprey_EST_Olfactory Petromyzon... 36 0.49 3 (DK283386) Drosophila auraria mRNA, adult full-length cDNA c... 46 0.51 2 (DY799840) PMAL-aaa92e11.g1 Lamprey_EST_Tissues Petromyzon m... 44 0.53 2 (CD310595) StrPu691.003959 Sea urchin larva cDNA library MPM... 36 0.53 3 (CU137653) Human DNA sequence from clone XX-C0511C0695L on c... 38 0.53 4 (BT012284) Arabidopsis thaliana At3g26932 gene, complete cds. 34 0.54 3 (CQ326669) Sequence 763 from Patent WO0157275. 44 0.56 2 (CQ289698) Sequence 803 from Patent WO0186003. 44 0.56 2 (CQ252552) Sequence 813 from Patent WO0157277. 44 0.56 2 (CQ213968) Sequence 807 from Patent WO0157273. 44 0.56 2 (CQ198504) Sequence 781 from Patent WO0157271. 44 0.56 2 (CQ169368) Sequence 764 from Patent WO0157274. 44 0.56 2 (CQ130759) Sequence 781 from Patent WO0157276. 44 0.56 2 (CQ091943) Sequence 802 from Patent WO0157272. 44 0.56 2 (CQ064990) Sequence 790 from Patent WO0157278. 44 0.56 2 (CQ049952) Sequence 772 from Patent WO0157270. 44 0.56 2 (BF566802) UI-R-BJ0p-afm-d-10-0-UI.r1 UI-R-BJ0p Rattus norve... 40 0.57 2 (EE062925) C1G04719 Mixture of buds, little clusters and fru... 32 0.60 4 (DW405368) ES-N-S03-0263-W Penaeus monodon Eyestalk cDNA lib... 40 0.61 2 (EF207620) Excirolana hirsuticauda clone Ehir7 microsatellit... 44 0.63 2 (CD314803) StrPu621.005167 Sea urchin unfertilised egg cDNA ... 40 0.63 2 (CQ300108) Sequence 11213 from Patent WO0186003. 44 0.64 3 (CQ263075) Sequence 11336 from Patent WO0157277. 44 0.64 3 (CQ177361) Sequence 8757 from Patent WO0157274. 44 0.64 3 (CQ102890) Sequence 11749 from Patent WO0157272. 44 0.64 3 (CQ072197) Sequence 7997 from Patent WO0157278. 44 0.64 3 (AY753053) Penaeus monodon clone zt113 microsatellite sequence. 44 0.64 2 (EE274993) PMAO-aac77d06.g1 Lamprey_EST_Embryo Petromyzon ma... 44 0.67 2 (BY529665) Mus musculus NOD-derived CD11c +ve dendritic cell... 44 0.68 2 (CQ342731) Sequence 16825 from Patent WO0157275. 40 0.70 2 (CQ305543) Sequence 16648 from Patent WO0186003. 40 0.70 2 (CQ268507) Sequence 16768 from Patent WO0157277. 40 0.70 2 (CQ230373) Sequence 17212 from Patent WO0157273. 40 0.70 2 (CQ206930) Sequence 9207 from Patent WO0157271. 40 0.70 2 (CQ182522) Sequence 13918 from Patent WO0157274. 40 0.70 2 (CQ147139) Sequence 17161 from Patent WO0157276. 40 0.70 2 (CQ108507) Sequence 17366 from Patent WO0157272. 40 0.70 2 (CQ077489) Sequence 13289 from Patent WO0157278. 40 0.70 2 (CQ058163) Sequence 8983 from Patent WO0157270. 40 0.70 2 (AY232267) Dictyostelium discoideum putative protein Roco5 (... 32 0.70 6 (FD719326) CAAA3924.fwd CAAA Petromyzon marinus Petromyzon m... 44 0.71 2 (DH819890) Rattus norvegicus DNA, BAC clone: RNB1-423F22, 5'... 40 0.72 2 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 0.73 10 (ET449609) fcg2x.pk193.d8 C. graminicola genomic sequence Gl... 40 0.73 2 (DQ471453) Takifugu rubripes immunoglobulin light chain T2a ... 40 0.74 3 (BH111301) RPCI-24-340J13.TV RPCI-24 Mus musculus genomic cl... 38 0.74 2 (BZ241111) CH230-324L22.TV CHORI-230 Segment 2 Rattus norveg... 44 0.75 2 (AC171134) Helobdella robusta clone CH306-1A5, complete sequ... 38 0.75 7 (BV311286) S236P6244FA8.T0 AlaskanMalamute Canis familiaris ... 36 0.76 3 (DH521845) Rattus norvegicus DNA, BAC clone: RNB1-019I20, 5'... 34 0.78 3 (BE067327) PM1-BT0350-281299-002-b07 BT0350 Homo sapiens cDN... 36 0.80 2 (DH514353) Rattus norvegicus DNA, BAC clone: RNB1-009I02, 3'... 40 0.83 2 (DH686092) Rattus norvegicus DNA, BAC clone: RNB1-241C03, 3'... 40 0.85 2 (DH446993) Macropus eugenii DNA with T3 primer, fosmid clone... 44 0.86 2 (DH544630) Rattus norvegicus DNA, BAC clone: RNB1-050L03, 5'... 40 0.87 2 (DH801469) Rattus norvegicus DNA, BAC clone: RNB1-397C03, 5'... 40 0.88 2 (AK035038) Mus musculus 12 days embryo embryonic body betwee... 44 0.88 2 (AK034558) Mus musculus 12 days embryo embryonic body betwee... 44 0.88 2 (AG337749) Mus musculus molossinus DNA, clone:MSMg01-129N13.... 36 0.88 3 (BK001933) TPA_inf: Drosophila melanogaster HDC08426 (HDC084... 40 0.91 2 (FC844712) CBHN3277.fwd CBHN Metridium senile tentacle Metri... 40 0.91 2 (AY209187) Trypanosoma cruzi RNA-binding protein 6 (rbp-6) m... 40 0.91 3 (ET589192) fcg3x.307650j23.f C. graminicola genomic sequence... 40 0.92 2 (EY336470) CAWY7703.fwd CAWY Helobdella robusta Subtracted E... 36 0.93 3 (ER110930) 1095521942354 Global-Ocean-Sampling_GS-33-01-01-1... 40 0.95 2 (DE926834) Macropus eugenii DNA, BAC clone: MEB1-116B15_F, 5... 40 0.97 2 (AK222128) Arabidopsis thaliana mRNA for putative protein, c... 34 0.98 3 (DE894236) Macropus eugenii DNA, BAC clone: MEB1-072A13_F, 5... 40 0.98 2 (BH476628) BOGQW24TF BOGQ Brassica oleracea genomic clone BO... 40 0.99 2 (AZ558244) RPCI-23-218G20.TV RPCI-23 Mus musculus genomic cl... 40 1.0 2 (CO543556) LyEST11171 Sea lamprey LyEST Petromyzon marinus c... 46 1.0 2 (AK035842) Mus musculus 16 days neonate cerebellum cDNA, RIK... 44 1.0 2 (BF753619) CM1-CT0039-031000-451-h08 CT0039 Homo sapiens cDN... 34 1.0 3 (EY339002) CAWY9397.fwd CAWY Helobdella robusta Subtracted E... 36 1.0 3 (CT164674) Sus scrofa genomic clone CH242-125A23, genomic su... 38 1.0 2 (DH114075) Oryzias latipes Fosmid clone:GOLWFno374_i07, forw... 40 1.1 2 (EY359984) CAWZ6793.fwd CAWZ Helobdella robusta Primary Late... 38 1.1 3 (CR343587) mte1-76F24RM1 BAC end, cultivar Jemalong A17 of M... 40 1.1 3 (AJ463497) Hordeum vulgare EST clone S0000200037B08F1. 36 1.1 2 (AJ460531) Hordeum vulgare EST clone S0000200052C01F1. 36 1.1 2 (EY369331) CAXA12303.fwd CAXA Helobdella robusta Subtracted ... 38 1.2 3 (AU060639) Dictyostelium discoideum slug cDNA, clone SLK715. 40 1.2 3 (AP006547) Homo sapiens genomic DNA, chromosome 8q23, clone:... 44 1.2 2 (CQ339122) Sequence 13216 from Patent WO0157275. 40 1.2 2 (CQ301927) Sequence 13032 from Patent WO0186003. 40 1.2 2 (CQ264838) Sequence 13099 from Patent WO0157277. 40 1.2 2 (CQ226696) Sequence 13535 from Patent WO0157273. 40 1.2 2 (CQ203331) Sequence 5608 from Patent WO0157271. 40 1.2 2 (CQ178982) Sequence 10378 from Patent WO0157274. 40 1.2 2 (CQ143492) Sequence 13514 from Patent WO0157276. 40 1.2 2 (CQ104790) Sequence 13649 from Patent WO0157272. 40 1.2 2 (CQ073900) Sequence 9700 from Patent WO0157278. 40 1.2 2 (CQ054655) Sequence 5475 from Patent WO0157270. 40 1.2 2 (AL185394) Tetraodon nigroviridis genome survey sequence PUC... 40 1.2 2 (AX647377) Sequence 1569 from Patent EP1270724. 44 1.3 3 (EY389198) CAXA7719.fwd CAXA Helobdella robusta Subtracted L... 38 1.3 3 (CQ340101) Sequence 14195 from Patent WO0157275. 40 1.4 2 (CQ302920) Sequence 14025 from Patent WO0186003. 40 1.4 2 (CQ265844) Sequence 14105 from Patent WO0157277. 40 1.4 2 (CQ227675) Sequence 14514 from Patent WO0157273. 40 1.4 2 (CQ204326) Sequence 6603 from Patent WO0157271. 40 1.4 2 (CQ179957) Sequence 11353 from Patent WO0157274. 40 1.4 2 (CQ144471) Sequence 14493 from Patent WO0157276. 40 1.4 2 (CQ105786) Sequence 14645 from Patent WO0157272. 40 1.4 2 (CQ074873) Sequence 10673 from Patent WO0157278. 40 1.4 2 (CQ055613) Sequence 6433 from Patent WO0157270. 40 1.4 2 (EY369824) CAXA1257.fwd CAXA Helobdella robusta Subtracted L... 38 1.4 3 (EY389250) CAXA7747.fwd CAXA Helobdella robusta Subtracted L... 38 1.5 3 (AL233375) Tetraodon nigroviridis genome survey sequence T7 ... 42 1.5 3 (BH303057) CH230-36P14.TJ CHORI-230 Segment 1 Rattus norvegi... 38 1.5 2 (DW618107) CLJ302-E04.x1d-t SHGC-CLJ2 Gasterosteus aculeatus... 40 1.5 3 (AZ196050) SP_1031_A2_E05_SP6E Strongylocentrotus purpuratus... 34 1.5 4 (AU060595) Dictyostelium discoideum slug cDNA, clone SLK568. 40 1.5 3 (BH276418) CH230-178C15.TJ CHORI-230 Segment 1 Rattus norveg... 38 1.5 2 (BB930817) Trifolium pratense cDNA clone:RCC02532. 44 1.6 2 (CV462441) Lr_JV2CF_45G05_SKplus Juvenile Earthworm Library ... 38 1.6 3 (BQ665129) HX02D17u HX Hordeum vulgare subsp. vulgare cDNA c... 36 1.6 2 (AC136285) Homo sapiens chromosome 16 clone RP11-899L11, com... 40 1.7 4 (AL691461) Mouse DNA sequence from clone RP23-162E10 on chro... 48 1.7 1 (AC200467) Rhesus Macaque BAC CH250-310K20 () complete sequ... 48 1.7 1 (AP004984) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 1.7 1 (AL513463) Neurospora crassa DNA linkage group V Cosmid cont... 48 1.7 1 (Z97192) Human DNA sequence from clone RP1-29C18 on chromoso... 48 1.7 1 (AL031055) Human DNA sequence from clone RP1-28H20 on chromo... 48 1.7 1 (AC140769) Rattus norvegicus clone CH230-77O18, *** SEQUENCI... 48 1.7 1 (AC133991) Rattus norvegicus clone CH230-17F14, *** SEQUENCI... 48 1.7 1 (AC127109) Rattus norvegicus clone CH230-242F21, WORKING DRA... 48 1.7 1 (AC125986) Rattus norvegicus clone CH230-3K20, WORKING DRAFT... 48 1.7 1 (AC125929) Rattus norvegicus clone CH230-118D11, *** SEQUENC... 48 1.7 1 (AC115181) Rattus norvegicus clone CH230-106B6, WORKING DRAF... 48 1.7 1 (AC113218) Rattus norvegicus clone CH230-354G24, WORKING DRA... 48 1.7 1 (AC111901) Rattus norvegicus clone CH230-65B24, WORKING DRAF... 48 1.7 1 (AC094796) Rattus norvegicus clone CH230-4N17, WORKING DRAFT... 48 1.7 1 (CU861652) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 1.7 1 (AL669909) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 48 1.7 1 (AC188220) Callithrix jacchus clone CH259-80M8, WORKING DRAF... 48 1.7 1 (AC025598) Homo sapiens chromosome 2 clone RP11-747D16 map 2... 48 1.7 1 (AC024966) Mus musculus chromosome 11 clone RP23-328K9 map 1... 48 1.7 1 (AY810137) Schistosoma japonicum SJCHGC05035 protein mRNA, p... 48 1.7 1 (FH903529) CHO_ONF015xp06f1.ab1 CHO_ONF Nicotiana tabacum ge... 48 1.7 1 (DT242391) JGI_CAAT12484.fwd CAAT Pimephales promelas brain ... 48 1.7 1 (DB623265) Halocynthia roretzi cDNA clone:mae36o22, 3' end. 48 1.7 1 (DB606864) Halocynthia roretzi cDNA clone:mae7d22, 5' end. 48 1.7 1 (DB601080) Halocynthia roretzi cDNA clone:ma329f04, 3' end. 48 1.7 1 (BU778777) SJEEGH05 SJE Schistosoma japonicum cDNA, mRNA seq... 48 1.7 1 (BU774481) SJEAFE01 SJE Schistosoma japonicum cDNA, mRNA seq... 48 1.7 1 (AC120785) Mus musculus chromosome 8, clone RP23-336P3, comp... 44 1.7 4 (AC100804) Homo sapiens chromosome 8, clone CTD-3119E5, comp... 44 1.7 4 (DK276594) Drosophila auraria mRNA, adult full-length cDNA c... 44 1.7 2 (CN807714) HDAH03A02.F Leech Haementeria depressa library HD... 44 1.8 2 (BM100421) EBma01_SQ005_C19_R maternal, 4 DPA, no treatment,... 36 1.9 2 (AJ477986) Hordeum vulgare EST clone S0001000056K03F1. 36 1.9 2 (EG964077) AU_Ich_001A_G11 Whole organism normalized cDNA li... 38 2.0 2 (CR313616) mte1-36B10RM1 BAC end, cultivar Jemalong A17 of M... 36 2.1 3 (DJ471693) Method for analysing genome using microsatellite ... 38 2.1 2 (CQ327354) Sequence 1448 from Patent WO0157275. 40 2.1 2 (CQ290388) Sequence 1493 from Patent WO0186003. 40 2.1 2 (CQ253252) Sequence 1513 from Patent WO0157277. 40 2.1 2 (CQ214644) Sequence 1483 from Patent WO0157273. 40 2.1 2 (CQ199199) Sequence 1476 from Patent WO0157271. 40 2.1 2 (CQ170052) Sequence 1448 from Patent WO0157274. 40 2.1 2 (CQ131438) Sequence 1460 from Patent WO0157276. 40 2.1 2 (CQ092633) Sequence 1492 from Patent WO0157272. 40 2.1 2 (CQ065660) Sequence 1460 from Patent WO0157278. 40 2.1 2 (CQ050616) Sequence 1436 from Patent WO0157270. 40 2.1 2 (BF815007) RC6-CI0190-301100-011-D09 CI0190 Homo sapiens cDN... 36 2.1 3 (FL641392) TS04-B2 Reticulitermes flavipes symbiont library ... 38 2.1 2 (AC020134) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 40 2.1 3 (CQ342489) Sequence 16583 from Patent WO0157275. 34 2.2 3 (CQ305288) Sequence 16393 from Patent WO0186003. 34 2.2 3 (CQ268254) Sequence 16515 from Patent WO0157277. 34 2.2 3 (CQ230106) Sequence 16945 from Patent WO0157273. 34 2.2 3 (CQ206688) Sequence 8965 from Patent WO0157271. 34 2.2 3 (CQ182292) Sequence 13688 from Patent WO0157274. 34 2.2 3 (CQ146881) Sequence 16903 from Patent WO0157276. 34 2.2 3 (CQ108252) Sequence 17111 from Patent WO0157272. 34 2.2 3 (CQ077251) Sequence 13051 from Patent WO0157278. 34 2.2 3 (CQ057943) Sequence 8763 from Patent WO0157270. 34 2.2 3 (EI203873) MUGQ_CH252P196O23T7_CN303_082 CHORI-252 Vervet Mo... 38 2.2 2 (AJ469046) Hordeum vulgare EST clone S0000800201F02F1. 36 2.2 2 (CQ329987) Sequence 4081 from Patent WO0157275. 40 2.2 2 (CQ293013) Sequence 4118 from Patent WO0186003. 40 2.2 2 (CQ255916) Sequence 4177 from Patent WO0157277. 40 2.2 2 (CQ217353) Sequence 4192 from Patent WO0157273. 40 2.2 2 (CQ201800) Sequence 4077 from Patent WO0157271. 40 2.2 2 (CQ172616) Sequence 4012 from Patent WO0157274. 40 2.2 2 (CQ134106) Sequence 4128 from Patent WO0157276. 40 2.2 2 (CQ095358) Sequence 4217 from Patent WO0157272. 40 2.2 2 (CQ068279) Sequence 4079 from Patent WO0157278. 40 2.2 2 (CQ053165) Sequence 3985 from Patent WO0157270. 40 2.2 2 (AZ725535) RPCI-24-113B23.TJ RPCI-24 Mus musculus genomic cl... 36 2.2 3 (AX647633) Sequence 1825 from Patent EP1270724. 40 2.2 3 (BJ361114) Dictyostelium discoideum cDNA clone:ddc9l23, 5' e... 38 2.2 3 (CO865035) LM_SM5_005969 Locusta migratoria solitarious phas... 44 2.3 2 (CK567819) HO08A05w HO Hordeum vulgare cDNA clone HO08A05 3-... 36 2.3 2 (BF910950) CM1-UT0039-041100-436-g11 UT0039 Homo sapiens cDN... 32 2.3 3 (AL783698) Xenopus tropicalis EST, clone TNeu066k14 5'. 40 2.4 2 (FD032374) CBCZ4473.b1 CBCZ: cDNA library made from Channel ... 44 2.5 2 (AC180540) Strongylocentrotus purpuratus clone R3-3098M2, WO... 44 2.5 5 (BG639745) SD05368.3prime SD Drosophila melanogaster Schneid... 40 2.5 2 (BJ427165) Dictyostelium discoideum cDNA clone:ddv61c14, 5' ... 38 2.5 3 (BQ764671) EBca01_SQ004_F16_R carpel, pre-anthesis, no treat... 36 2.6 2 (AZ093214) RPCI-23-445M10.TV RPCI-23 Mus musculus genomic cl... 40 2.6 2 (AZ725604) RPCI-24-113C23.TJ RPCI-24 Mus musculus genomic cl... 36 2.6 3 (BU982063) HA25G17r HA Hordeum vulgare subsp. vulgare cDNA c... 36 2.7 2 (DQ471454) Takifugu rubripes immunoglobulin light chain T2b ... 40 2.8 3 (CR251565) Reverse strand read from insert in 5'HPRT inserti... 38 2.9 2 (AZ371035) 1M0122I24F Mouse 10kb plasmid UUGC1M library Mus ... 38 2.9 2 (ED706965) GM_WBb0052E18.r GM_WBb Glycine max genomic clone ... 40 2.9 2 (CQ344623) Sequence 18717 from Patent WO0157275. 40 2.9 2 (CQ307782) Sequence 18887 from Patent WO0186003. 40 2.9 2 (CQ270525) Sequence 18786 from Patent WO0157277. 40 2.9 2 (CQ232470) Sequence 19309 from Patent WO0157273. 40 2.9 2 (CQ184184) Sequence 15580 from Patent WO0157274. 40 2.9 2 (CQ149194) Sequence 19216 from Patent WO0157276. 40 2.9 2 (CQ110466) Sequence 19325 from Patent WO0157272. 40 2.9 2 (CQ079091) Sequence 14891 from Patent WO0157278. 40 2.9 2 (EY481894) CBBP12023.fwd CBBP Hirudo medicinalis hermaphrodi... 42 2.9 2 (CQ341417) Sequence 15511 from Patent WO0157275. 40 2.9 2 (CQ304146) Sequence 15251 from Patent WO0186003. 40 2.9 2 (CQ267120) Sequence 15381 from Patent WO0157277. 40 2.9 2 (CQ229000) Sequence 15839 from Patent WO0157273. 40 2.9 2 (CQ205581) Sequence 7858 from Patent WO0157271. 40 2.9 2 (CQ181238) Sequence 12634 from Patent WO0157274. 40 2.9 2 (CQ145785) Sequence 15807 from Patent WO0157276. 40 2.9 2 (CQ107119) Sequence 15978 from Patent WO0157272. 40 2.9 2 (CQ076134) Sequence 11934 from Patent WO0157278. 40 2.9 2 (CQ056868) Sequence 7688 from Patent WO0157270. 40 2.9 2 (AC184435) Strongylocentrotus purpuratus clone R3-3094B2, WO... 44 2.9 6 (EY337929) CAWY8665.rev CAWY Helobdella robusta Subtracted E... 36 3.0 3 (EI709831) IGBR11H01TR BAC library from the recurrent gliobl... 40 3.0 2 (BI955438) HVSMEm0023C05f Hordeum vulgare green seedling EST... 36 3.0 2 (EY514021) CAPF11691.fwd CAPF Capitella sp. I ECS-2004 whole... 44 3.1 2 (DH828766) Rattus norvegicus DNA, BAC clone: RNB1-435F13, 3'... 40 3.1 2 (AG300329) Mus musculus molossinus DNA, clone:MSMg01-079C23.... 36 3.1 3 (EY373880) CAXA14789.rev CAXA Helobdella robusta Subtracted ... 34 3.1 3 (AL178892) Tetraodon nigroviridis genome survey sequence PUC... 44 3.1 2 (AZ359307) 1M0102O06F Mouse 10kb plasmid UUGC1M library Mus ... 38 3.1 2 (AM522569) Paracentrotus lividus EST, clone MPMGp1171G0221Q,... 42 3.2 2 (EY940491) RS2E747TF RS2(RS) Raphanus sativus cDNA 5', mRNA ... 38 3.2 2 (FD857840) CBHA7143.rev CBHA Volvox carteri f. nagariensis i... 42 3.2 2 (FD844573) CBHA12067.rev CBHA Volvox carteri f. nagariensis ... 42 3.2 2 (FD857841) CBHA7143.fwd CBHA Volvox carteri f. nagariensis i... 42 3.2 2 (FD844574) CBHA12067.fwd CBHA Volvox carteri f. nagariensis ... 42 3.2 2 (FD840241) CBGZ8487.fwd CBGZ Volvox carteri f. nagariensis i... 42 3.2 2 (AG362775) Mus musculus molossinus DNA, clone:MSMg01-164D18.... 42 3.3 2 (FD916367) CBOX19213.fwd CBOX Volvox carteri f. nagariensis ... 42 3.3 2 (DH660811) Rattus norvegicus DNA, BAC clone: RNB1-207D07, 3'... 44 3.3 2 (AC181363) Strongylocentrotus purpuratus clone R3-112K1, WOR... 34 3.3 2 (AC179294) Strongylocentrotus purpuratus clone R3-1105F19, W... 36 3.3 2 (DH713936) Rattus norvegicus DNA, BAC clone: RNB1-278L18, 5'... 42 3.3 2 (FD809935) CBGZ1482.rev CBGZ Volvox carteri f. nagariensis i... 42 3.3 2 (AC158552) Mus musculus chromosome 3, clone RP23-97D22, comp... 44 3.3 3 (FD926076) CBOX602.rev CBOX Volvox carteri f. nagariensis in... 42 3.4 2 (BZ158473) CH230-301K11.TJ CHORI-230 Segment 2 Rattus norveg... 36 3.4 2 (AL079301) Human DNA sequence from clone RP4-753M9 on chromo... 44 3.4 2 (FD914187) CBOX18045.fwd CBOX Volvox carteri f. nagariensis ... 42 3.4 2 (BX012809) Single read from an extremity of a full-length cD... 44 3.4 2 (FD908265) CBOX14706.fwd CBOX Volvox carteri f. nagariensis ... 42 3.4 2 (FD820799) CBGZ21508.rev CBGZ Volvox carteri f. nagariensis ... 42 3.4 2 (BX322573) Human DNA sequence from clone RP11-343N7 on chrom... 36 3.4 2 (FD916366) CBOX19213.rev CBOX Volvox carteri f. nagariensis ... 42 3.4 2 (DH542813) Rattus norvegicus DNA, BAC clone: RNB1-048D06, 3'... 40 3.4 2 (FD908264) CBOX14706.rev CBOX Volvox carteri f. nagariensis ... 42 3.4 2 (AC141387) Rattus norvegicus clone CH230-228E17, WORKING DRA... 40 3.4 4 (AG557428) Mus musculus molossinus DNA, clone:MSMg01-475K10.... 36 3.4 3 (FD857258) CBHA6834.rev CBHA Volvox carteri f. nagariensis i... 42 3.4 2 (BG300530) HVSMEb0017G03f Hordeum vulgare seedling shoot EST... 36 3.5 2 (AG982655) Hemicentrotus pulcherrimus BAC clone: BUB1-03B09_... 44 3.5 2 (CO545658) LyEST1456 Sea lamprey LyEST Petromyzon marinus cD... 46 3.5 2 (FD857259) CBHA6834.fwd CBHA Volvox carteri f. nagariensis i... 42 3.5 2 (CR203046) Reverse strand read from insert in 5'HPRT inserti... 38 3.6 2 (CQ343826) Sequence 17920 from Patent WO0157275. 40 3.6 2 (CQ306918) Sequence 18023 from Patent WO0186003. 40 3.6 2 (CQ269782) Sequence 18043 from Patent WO0157277. 40 3.6 2 (CQ231603) Sequence 18442 from Patent WO0157273. 40 3.6 2 (CQ148339) Sequence 18361 from Patent WO0157276. 40 3.6 2 (CQ109650) Sequence 18509 from Patent WO0157272. 40 3.6 2 (BZ217219) CH230-517P22.TV CHORI-230 Segment 2 Rattus norveg... 38 3.6 2 (EY343618) CAWZ12603.fwd CAWZ Helobdella robusta Primary Lat... 36 3.7 3 (DH592296) Rattus norvegicus DNA, BAC clone: RNB1-115C03, 5'... 40 3.8 3 (AG299199) Mus musculus molossinus DNA, clone:MSMg01-076K21.... 36 3.8 3 (AZ805656) 2M0067I12F Mouse 10kb plasmid UUGC1M library Mus ... 36 3.8 2 (EY386385) CAXA6195.rev CAXA Helobdella robusta Subtracted L... 38 4.0 3 (AX647283) Sequence 1475 from Patent EP1270724. 38 4.0 3 (BV570402) G591P65997RC1.T0 Clint Pan troglodytes verus STS ... 42 4.0 2 (BH356455) CH230-163J19.TV CHORI-230 Segment 1 Rattus norveg... 34 4.0 3 (EY331432) CAWY417.rev CAWY Helobdella robusta Subtracted Ea... 36 4.1 3 (EY337930) CAWY8665.fwd CAWY Helobdella robusta Subtracted E... 36 4.1 3 (CQ328712) Sequence 2806 from Patent WO0157275. 40 4.2 2 (CQ291656) Sequence 2761 from Patent WO0186003. 40 4.2 2 (CQ254568) Sequence 2829 from Patent WO0157277. 40 4.2 2 (CQ216011) Sequence 2850 from Patent WO0157273. 40 4.2 2 (CQ200487) Sequence 2764 from Patent WO0157271. 40 4.2 2 (CQ171376) Sequence 2772 from Patent WO0157274. 40 4.2 2 (CQ132793) Sequence 2815 from Patent WO0157276. 40 4.2 2 (CQ094005) Sequence 2864 from Patent WO0157272. 40 4.2 2 (CQ066955) Sequence 2755 from Patent WO0157278. 40 4.2 2 (CQ051911) Sequence 2731 from Patent WO0157270. 40 4.2 2 (AG986382) Hemicentrotus pulcherrimus BAC clone: BUB1-08N05_... 40 4.2 2 (EY344391) CAWZ13064.fwd CAWZ Helobdella robusta Primary Lat... 38 4.2 3 (EH012217) USDA-FP_185139 Lysiphlebus testaceipes adult whol... 32 4.3 3 (BZ223258) CH230-496O4.TVB CHORI-230 Segment 2 Rattus norveg... 36 4.3 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 4.3 12 (Z95308) C.hyalina microsatellite marker DNA (id T8). 36 4.4 2 (AC181850) Strongylocentrotus purpuratus clone R3-1022C20, W... 36 4.4 8 (EF207629) Excirolana hirsuticauda clone Ehir16 microsatelli... 32 4.6 3 (CR475781) RZPD Rattus norvegicus cDNA clone LIONp463H01391 ... 40 4.7 2 (EF747530) Mus musculus C57BL/6N IST10255E4BBF1 gene trap em... 36 4.8 2 (EB392924) PMAO-aaa49c06.g1 Lamprey_EST_Embryo Petromyzon ma... 40 4.8 2 (CD086566) MC1-0025T-R085-G05-U.G MC1-0025 Schistosoma manso... 34 4.9 3 (DH611327) Rattus norvegicus DNA, BAC clone: RNB1-140N08, 3'... 32 4.9 3 (GD417013) 454PCS0044704 Scarlet Runner Bean globular-stage ... 40 5.1 2 (EF424219) Homo sapiens cell-line somatic cell hybrid F1H4 c... 32 5.2 4 (DV415149) NADW181TR Aedes aegypti infected with Dengue viru... 42 5.3 2 (AC179467) Strongylocentrotus purpuratus clone R3-63K14, WOR... 36 5.3 4 (AL451000) Human DNA sequence from clone RP11-223J15 on chro... 44 5.3 5 (CX691857) ydd36e07.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 5.3 2
>(BJ333867) Dictyostelium discoideum cDNA clone:dda44g07, 5' end, single read. Length = 657
Score = 666 bits (336), Expect(6) = 0.0 Identities = 336/336 (100%) Strand = Plus / Plus
Query: 1 tatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaactgctgttgaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaactgctgttgaat 60
Query: 61 cttcaaaattatttggcggcggtggtattactttcaatgcaccaaatatattcggtaaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cttcaaaattatttggcggcggtggtattactttcaatgcaccaaatatattcggtaaca 120
Query: 121 atagtaatccatcaaacttatttggcagtggtaataacaattcttcatcactatttggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 atagtaatccatcaaacttatttggcagtggtaataacaattcttcatcactatttggtg 180
Query: 181 gtaattcaacaaccaatcctcctccattatttggaaataaatctgatgtcaaaactgagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtaattcaacaaccaatcctcctccattatttggaaataaatctgatgtcaaaactgagg 240
Query: 241 aatcagaaaagaaggctgaagcatgtactccatcaccatcaaccacatcaggtaaattaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aatcagaaaagaaggctgaagcatgtactccatcaccatcaaccacatcaggtaaattaa 300
Query: 301 tttggaaatgtttatgttgtgaaactgaaaattcag 336 |||||||||||||||||||||||||||||||||||| Sbjct: 301 tttggaaatgtttatgttgtgaaactgaaaattcag 336
Score = 111 bits (56), Expect(6) = 0.0 Identities = 68/72 (94%) Strand = Plus / Plus
Query: 425 atcatcaatatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaactgc 484 ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 422 atcatcattattcgctccaactgcatttggtggcaatgcaccaccaactacttcaactgc 481
Query: 485 tgttgactcttc 496 |||||| ||||| Sbjct: 482 tgttgaatcttc 493
Score = 105 bits (53), Expect(6) = 0.0 Identities = 68/73 (93%) Strand = Plus / Plus
Query: 357 gtttgtatggtcccattaccaaagaatgtcaaatttgaatcaccagcttctgaatcaaat 416 ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct: 357 gtttgtatggttccagttccaaagaatgtcaaatttgaatcaccagcttctgaatcaaat 416
Query: 417 actaaaccatcat 429 || ||| |||||| Sbjct: 417 accaaatcatcat 429
Score = 71.9 bits (36), Expect(6) = 0.0 Identities = 45/48 (93%) Strand = Plus / Plus
Query: 563 taacaatagtaatccatcaaacttatttggcagtggtaataacaattc 610 |||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct: 553 taacaataataatccatcaaacttatttggaaatggtaataacaattc 600
Score = 46.1 bits (23), Expect(6) = 0.0 Identities = 35/39 (89%) Strand = Plus / Plus
Query: 527 tattactttcaacgcaccaactttattcggtaacaataa 565 |||||||||||| |||| || | |||||||||||||||| Sbjct: 523 tattactttcaatgcacgaaatatattcggtaacaataa 561
Score = 30.2 bits (15), Expect(6) = 0.0 Identities = 17/18 (94%) Strand = Plus / Plus
Query: 624 ggtggcaattcaacaacc 641 ||||| |||||||||||| Sbjct: 617 ggtggnaattcaacaacc 634
Score = 151 bits (76), Expect(3) = 6e-76 Identities = 79/80 (98%) Strand = Plus / Plus
Query: 563 taacaatagtaatccatcaaacttatttggcagtggtaataacaattcttcatcactatt 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116 taacaatagtaatccatcaaacttatttggcagtggtaataacaattcttcatcactatt 175
Query: 623 tggtggcaattcaacaacca 642 |||||| ||||||||||||| Sbjct: 176 tggtggtaattcaacaacca 195
Score = 135 bits (68), Expect(3) = 6e-76 Identities = 74/76 (97%) Strand = Plus / Plus
Query: 433 tatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaactgctgttgact 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1 tatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaactgctgttgaat 60
Query: 493 cttctaaattatttgg 508 |||| ||||||||||| Sbjct: 61 cttcaaaattatttgg 76
Score = 52.0 bits (26), Expect(3) = 6e-76 Identities = 35/38 (92%) Strand = Plus / Plus
Query: 527 tattactttcaacgcaccaactttattcggtaacaata 564 |||||||||||| ||||||| | ||||||||||||||| Sbjct: 86 tattactttcaatgcaccaaatatattcggtaacaata 123
Score = 129 bits (65), Expect(4) = 9e-62 Identities = 77/81 (95%) Strand = Plus / Plus
Query: 83 tggtattactttcaatgcaccaaatatattcggtaacaatagtaatccatcaaacttatt 142 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 520 tggtattactttcaatgcacgaaatatattcggtaacaataataatccatcaaacttatt 579
Query: 143 tggcagtggtaataacaattc 163 ||| | ||||||||||||||| Sbjct: 580 tggaaatggtaataacaattc 600
Score = 115 bits (58), Expect(4) = 9e-62 Identities = 64/66 (96%) Strand = Plus / Plus
Query: 1 tatttgctccaactgcatttggtggcaatgcaccaccaacaacttcaactgctgttgaat 60 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 430 tattcgctccaactgcatttggtggcaatgcaccaccaactacttcaactgctgttgaat 489
Query: 61 cttcaa 66 |||||| Sbjct: 490 cttcaa 495
Score = 34.2 bits (17), Expect(4) = 9e-62 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 198 cctcctccattatttgg 214 ||||||||||||||||| Sbjct: 641 cctcctccattatttgg 657
Score = 30.2 bits (15), Expect(4) = 9e-62 Identities = 17/18 (94%) Strand = Plus / Plus
Query: 177 ggtggtaattcaacaacc 194 ||||| |||||||||||| Sbjct: 617 ggtggnaattcaacaacc 634
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 1,753,528,610 Number of extensions: 112455777 Number of successful extensions: 11227910 Number of sequences better than 10.0: 715 Length of query: 2570 Length of database: 98,766,808,389 Length adjustment: 25 Effective length of query: 2545 Effective length of database: 96,311,147,814 Effective search space: 245111871186630 Effective search space used: 245111871186630 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.20 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
3 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |