Contig-U16055-1 |
Contig ID |
Contig-U16055-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2090 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
2742478 |
End point |
2740389 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
9 |
Number of EST |
15 |
Link to clone list |
U16055 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
Query= Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Contig-U16055-1Q.Seq.d (2100 letters)
Database: CSM 8402 sequences; 8,075,542 total letters
Score E Sequences producing significant alignments: (bits) Value
Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Conti... 551 e-156 Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Conti... 88 6e-17 Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Conti... 46 2e-04 Contig-U14345-1 (Contig-U14345-1Q) /CSM_Contig/Conti... 42 0.003 Contig-U14497-1 (Contig-U14497-1Q) /CSM_Contig/Conti... 40 0.014 Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti... 40 0.014 Contig-U03947-1 (Contig-U03947-1Q) /CSM_Contig/Conti... 40 0.014 Contig-U16576-1 (Contig-U16576-1Q) /CSM_Contig/Conti... 38 0.054 Contig-U16575-1 (Contig-U16575-1Q) /CSM_Contig/Conti... 38 0.054 Contig-U16574-1 (Contig-U16574-1Q) /CSM_Contig/Conti... 38 0.054
>Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Contig-U16055-1Q.Seq.d Length = 2100
Score = 551 bits (278), Expect = e-156 Identities = 278/278 (100%) Strand = Plus / Plus
Query: 1 taacaatctttttcgctccttctggtacaactattcaaagaattactgatgataaattaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 taacaatctttttcgctccttctggtacaactattcaaagaattactgatgataaattaa 60
Query: 61 aatttggtgatgaaatttatgatattgattcaacattaggcaatagaaaaccatcatatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aatttggtgatgaaatttatgatattgattcaacattaggcaatagaaaaccatcatatg 120
Query: 121 aagatttaaatgatgcaacaaacacattggtagaaaataataaattggaaattgataaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagatttaaatgatgcaacaaacacattggtagaaaataataaattggaaattgataaaa 180
Query: 181 aggtagaacaaggacaacaacaggaaaacccaaaatctgaaccatcttcttcaaatacta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aggtagaacaaggacaacaacaggaaaacccaaaatctgaaccatcttcttcaaatacta 240
Query: 241 ctgatacaactcatactccaatcactaccactaccacc 278 |||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgatacaactcatactccaatcactaccactaccacc 278
Score = 507 bits (256), Expect = e-143 Identities = 256/256 (100%) Strand = Plus / Plus
Query: 1057 gagattagctgaagaatcaagattagcagaagagaaaaaattgacagaggaagtagaggc 1116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1057 gagattagctgaagaatcaagattagcagaagagaaaaaattgacagaggaagtagaggc 1116
Query: 1117 aaacagagttgctcaagaagctgcaaagaaagtagaggaagatagattagctgaactcga 1176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1117 aaacagagttgctcaagaagctgcaaagaaagtagaggaagatagattagctgaactcga 1176
Query: 1177 aaagaaaagattagctgaagaagaacaaacaaagaaattagcagaagaagccgctgccaa 1236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1177 aaagaaaagattagctgaagaagaacaaacaaagaaattagcagaagaagccgctgccaa 1236
Query: 1237 aaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatt 1296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1237 aaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatt 1296
Query: 1297 agcagttgaagcagca 1312 |||||||||||||||| Sbjct: 1297 agcagttgaagcagca 1312
Score = 452 bits (228), Expect = e-126 Identities = 228/228 (100%) Strand = Plus / Plus
Query: 1373 ttagctgaaattgagaagaagagattagctgatgaacaagaggcaaagagaattgctgaa 1432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1373 ttagctgaaattgagaagaagagattagctgatgaacaagaggcaaagagaattgctgaa 1432
Query: 1433 gaggaagctaaaagagccgaagaagccagattagcagaagaagctgccaaaaaagcagag 1492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1433 gaggaagctaaaagagccgaagaagccagattagcagaagaagctgccaaaaaagcagag 1492
Query: 1493 gaagacagattaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaa 1552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1493 gaagacagattaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaa 1552
Query: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcagccaag 1600 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcagccaag 1600
Score = 371 bits (187), Expect = e-102 Identities = 193/193 (100%) Strand = Plus / Plus
Query: 608 tgctgaacacagagaaaaaacttagacttagaaatgaacaattggaaaaggaaagacaag 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608 tgctgaacacagagaaaaaacttagacttagaaatgaacaattggaaaaggaaagacaag 667
Query: 668 aaattcgtgatanagaagaacaagagaaacaagagaaagatcgtttagaaaaagaacgtn 727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 668 aaattcgtgatanagaagaacaagagaaacaagagaaagatcgtttagaaaaagaacgtn 727
Query: 728 gtgaaaaattaaaacaaagaaatgaacaattggataaggaaagacaagagaaattcaaaa 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 728 gtgaaaaattaaaacaaagaaatgaacaattggataaggaaagacaagagaaattcaaaa 787
Query: 788 aggatcaagaaga 800 ||||||||||||| Sbjct: 788 aggatcaagaaga 800
Score = 224 bits (113), Expect = 4e-58 Identities = 113/113 (100%) Strand = Plus / Plus
Query: 1979 gaagctaaaagaattgcagaagaagttgcagcagttgcagcaaagaaagcagaagaggaa 2038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1979 gaagctaaaagaattgcagaagaagttgcagcagttgcagcaaagaaagcagaagaggaa 2038
Query: 2039 agattagcagccgaagcagaaaataaaagattagaggatgaacaaaaagcatt 2091 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2039 agattagcagccgaagcagaaaataaaagattagaggatgaacaaaaagcatt 2091
Score = 202 bits (102), Expect = 2e-51 Identities = 102/102 (100%) Strand = Plus / Plus
Query: 860 gattagctgatgaacaagccgctgttgcaaagaaacttgaaaatgatagattggctgctg 919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 gattagctgatgaacaagccgctgttgcaaagaaacttgaaaatgatagattggctgctg 919
Query: 920 aagaatctgaaaacaaaagattgacagaagaagctagattgg 961 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 920 aagaatctgaaaacaaaagattgacagaagaagctagattgg 961
Score = 168 bits (85), Expect = 2e-41 Identities = 127/141 (90%) Strand = Plus / Plus
Query: 1460 agattagcagaagaagctgccaaaaaagcagaggaagacagattaacagccgaagcagcc 1519 |||||||||| ||||| |||||||||||||| ||||| |||||| |||| ||||||||| Sbjct: 1538 agattagcagctgaagcagccaaaaaagcagaagaagatagattagcagctgaagcagcc 1597
Query: 1520 aagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaagataga 1579 |||||||| ||||| | |||||||||||||||||||| || |||||||||||||| ||| Sbjct: 1598 aagaaagcagaagaggagagattagcagctgaagcagcaaagaaagcagaagaagaaaga 1657
Query: 1580 ttagcagctgaagcagccaag 1600 ||||||||||||||||||||| Sbjct: 1658 ttagcagctgaagcagccaag 1678
Score = 165 bits (83), Expect = 3e-40 Identities = 137/155 (88%) Strand = Plus / Plus
Query: 1442 aaaagagccgaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacaga 1501 |||| ||| ||||||| |||||||||| ||||| ||||| |||||||| || || ||| Sbjct: 1559 aaaaaagcagaagaagatagattagcagctgaagcagccaagaaagcagaagaggagaga 1618
Query: 1502 ttaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaa 1561 ||| |||| |||||||| |||||||| |||||| ||||||||||||||||||||||||| Sbjct: 1619 ttagcagctgaagcagcaaagaaagcagaagaagaaagattagcagctgaagcagccaag 1678
Query: 1562 aaagcagaagaagatagattagcagctgaagcagc 1596 |||||||||||||| |||||||||||||||||||| Sbjct: 1679 aaagcagaagaagaaagattagcagctgaagcagc 1713
Score = 159 bits (80), Expect = 2e-38 Identities = 127/142 (89%), Gaps = 3/142 (2%) Strand = Plus / Plus
Query: 1462 attagcagaagaagc---tgccaaaaaagcagaggaagacagattaacagccgaagcagc 1518 ||||||||||||||| ||||||||||||||| || ||||||||| |||| |||||||| Sbjct: 1213 attagcagaagaagccgctgccaaaaaagcagaagatgacagattagcagctgaagcagc 1272
Query: 1519 caagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaagatag 1578 |||||||||||||| | |||||||||| ||||||||| || ||||||||||||||||| Sbjct: 1273 aaagaaagctgaagaggagagattagcagttgaagcagcaaagaaagcagaagaagatag 1332
Query: 1579 attagcagctgaagcagccaag 1600 |||||||||||| ||||||||| Sbjct: 1333 attagcagctgaggcagccaag 1354
Score = 133 bits (67), Expect = 1e-30 Identities = 124/143 (86%) Strand = Plus / Plus
Query: 1454 gaagccagattagcagaagaagctgccaaaaaagcagaggaagacagattaacagccgaa 1513 |||| ||||||| ||| ||||| ||||| ||||| || ||| | |||||| |||| ||| Sbjct: 1493 gaagacagattaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaa 1552
Query: 1514 gcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaa 1573 |||||||| ||||| |||||| | ||||||||||||||||||||||| ||||||||||| Sbjct: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcagccaagaaagcagaagag 1612
Query: 1574 gatagattagcagctgaagcagc 1596 || |||||||||||||||||||| Sbjct: 1613 gagagattagcagctgaagcagc 1635
Score = 123 bits (62), Expect = 1e-27 Identities = 115/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Plus
Query: 1460 agattagcagaagaagctgccaaaaaagcagaggaagacagattaacagccgaagcagcc 1519 |||||||||| |||||| || || |||||||||||||| |||||| |||| |||||||| Sbjct: 1847 agattagcagcagaagcagcaaagaaagcagaggaagaaagattagcagcagaagcagca 1906
Query: 1520 aagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaagataga 1579 ||||||| ||||| ||||||||||||| |||||||| || |||||||| ||||| ||| Sbjct: 1907 aagaaag---aagaagaaagattagcagcagaagcagcaaagaaagcagaggaagagaga 1963
Query: 1580 ttagcagctgaa 1591 |||||||||||| Sbjct: 1964 ttagcagctgaa 1975
Score = 121 bits (61), Expect = 5e-27 Identities = 76/81 (93%) Strand = Plus / Plus
Query: 1232 gccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggag 1291 ||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||| Sbjct: 1556 gccaaaaaagcagaagaagatagattagcagctgaagcagccaagaaagcagaagaggag 1615
Query: 1292 agattagcagttgaagcagca 1312 |||||||||| |||||||||| Sbjct: 1616 agattagcagctgaagcagca 1636
Score = 115 bits (58), Expect = 3e-25 Identities = 100/114 (87%) Strand = Plus / Plus
Query: 1460 agattagcagaagaagctgccaaaaaagcagaggaagacagattaacagccgaagcagcc 1519 |||||||||| ||||| || || |||||||| ||||| |||||| |||| ||||||||| Sbjct: 1616 agattagcagctgaagcagcaaagaaagcagaagaagaaagattagcagctgaagcagcc 1675
Query: 1520 aagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaa 1573 |||||||| |||||| |||||||||||||||||||||| || |||| ||||||| Sbjct: 1676 aagaaagcagaagaagaaagattagcagctgaagcagcaaagaaagaagaagaa 1729
Score = 113 bits (57), Expect = 1e-24 Identities = 99/113 (87%) Strand = Plus / Plus
Query: 1484 aaagcagaggaagacagattaacagccgaagcagccaagaaagctgaagaacaaagatta 1543 |||||||| ||||| ||||||||||| |||||||| ||||||| ||||| |||||||| Sbjct: 1793 aaagcagaagaagaaagattaacagcagaagcagcaaagaaagaagaagaggaaagatta 1852
Query: 1544 gcagctgaagcagccaaaaaagcagaagaagatagattagcagctgaagcagc 1596 ||||| |||||||| || |||||||| ||||| ||||||||||| |||||||| Sbjct: 1853 gcagcagaagcagcaaagaaagcagaggaagaaagattagcagcagaagcagc 1905
Score = 103 bits (52), Expect = 1e-21 Identities = 120/142 (84%), Gaps = 3/142 (2%) Strand = Plus / Plus
Query: 1451 gaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacagattaacagcc 1510 ||||||| |||||||||| ||||| ||||| |||||||| ||||| |||||| |||| Sbjct: 1646 gaagaagaaagattagcagctgaagcagccaagaaagcagaagaagaaagattagcagct 1705
Query: 1511 gaagcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaa 1570 |||||||| ||||||| ||||| ||||||| |||||||| |||| ||||||| |||| Sbjct: 1706 gaagcagcaaagaaag---aagaagaaagattggcagctgaggcagtaaaaaaagaagaa 1762
Query: 1571 gaagatagattagcagctgaag 1592 || || |||||||||||||||| Sbjct: 1763 gaggaaagattagcagctgaag 1784
Score = 103 bits (52), Expect = 1e-21 Identities = 73/80 (91%) Strand = Plus / Plus
Query: 1232 gccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggag 1291 ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| || Sbjct: 1595 gccaagaaagcagaagaggagagattagcagctgaagcagcaaagaaagcagaagaagaa 1654
Query: 1292 agattagcagttgaagcagc 1311 |||||||||| ||||||||| Sbjct: 1655 agattagcagctgaagcagc 1674
Score = 97.6 bits (49), Expect = 7e-20 Identities = 87/99 (87%), Gaps = 3/99 (3%) Strand = Plus / Plus
Query: 1213 attagcagaagaagccgctgccaaaaaagcagaagatgacagattagcagctgaagcagc 1272 ||||||||||||||| ||||||||||||||| || ||||||||| |||| |||||||| Sbjct: 1462 attagcagaagaagc---tgccaaaaaagcagaggaagacagattaacagccgaagcagc 1518
Query: 1273 aaagaaagctgaagaggagagattagcagttgaagcagc 1311 |||||||||||||| | |||||||||| ||||||||| Sbjct: 1519 caagaaagctgaagaacaaagattagcagctgaagcagc 1557
Score = 93.7 bits (47), Expect = 1e-18 Identities = 68/75 (90%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297 ||||||||||| || |||||||||||||||||||| |||||||| ||||| || |||||| Sbjct: 1640 aaagcagaagaagaaagattagcagctgaagcagccaagaaagcagaagaagaaagatta 1699
Query: 1298 gcagttgaagcagca 1312 |||| |||||||||| Sbjct: 1700 gcagctgaagcagca 1714
Score = 87.7 bits (44), Expect = 6e-17 Identities = 121/146 (82%), Gaps = 3/146 (2%) Strand = Plus / Plus
Query: 1451 gaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacagattaacagcc 1510 ||||||| |||||| ||| |||||| || || |||| ||| || || |||||| |||| Sbjct: 1799 gaagaagaaagattaacagcagaagcagcaaagaaagaagaagaggaaagattagcagca 1858
Query: 1511 gaagcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaa 1570 |||||||| |||||||| || ||| ||||||||||||| |||||||| || || |||| Sbjct: 1859 gaagcagcaaagaaagcagaggaagaaagattagcagcagaagcagcaaagaa---agaa 1915
Query: 1571 gaagatagattagcagctgaagcagc 1596 ||||| ||||||||||| |||||||| Sbjct: 1916 gaagaaagattagcagcagaagcagc 1941
Score = 87.7 bits (44), Expect = 6e-17 Identities = 98/116 (84%) Strand = Plus / Plus
Query: 1481 aaaaaagcagaggaagacagattaacagccgaagcagccaagaaagctgaagaacaaaga 1540 ||||||| ||| || || |||||| |||| |||| ||| |||||||| |||||| ||||| Sbjct: 1751 aaaaaagaagaagaggaaagattagcagctgaagtagcaaagaaagcagaagaagaaaga 1810
Query: 1541 ttagcagctgaagcagccaaaaaagcagaagaagatagattagcagctgaagcagc 1596 ||| |||| |||||||| || |||| |||||| || ||||||||||| |||||||| Sbjct: 1811 ttaacagcagaagcagcaaagaaagaagaagaggaaagattagcagcagaagcagc 1866
Score = 85.7 bits (43), Expect = 3e-16 Identities = 118/143 (82%) Strand = Plus / Plus
Query: 1442 aaaagagccgaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacaga 1501 |||| ||| ||||| | ||||||||||| ||||| || || ||||| || || || ||| Sbjct: 1235 aaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagaga 1294
Query: 1502 ttaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaa 1561 ||| ||| |||||||| |||||||| |||||| | |||||||||||||| |||||||| Sbjct: 1295 ttagcagttgaagcagcaaagaaagcagaagaagatagattagcagctgaggcagccaag 1354
Query: 1562 aaagcagaagaagatagattagc 1584 |||| |||||| || |||||||| Sbjct: 1355 aaagaagaagaggagagattagc 1377
Score = 77.8 bits (39), Expect = 6e-14 Identities = 66/75 (88%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297 ||||||||||| || |||||| |||| |||||||||||||||| |||||||| |||||| Sbjct: 1793 aaagcagaagaagaaagattaacagcagaagcagcaaagaaagaagaagaggaaagatta 1852
Query: 1298 gcagttgaagcagca 1312 |||| ||||||||| Sbjct: 1853 gcagcagaagcagca 1867
Score = 75.8 bits (38), Expect = 2e-13 Identities = 56/62 (90%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297 ||||||||||| || |||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct: 1316 aaagcagaagaagatagattagcagctgaggcagccaagaaagaagaagaggagagatta 1375
Query: 1298 gc 1299 || Sbjct: 1376 gc 1377
Score = 75.8 bits (38), Expect = 2e-13 Identities = 68/78 (87%) Strand = Plus / Plus
Query: 1235 aaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagaga 1294 ||||||| |||||| || |||||||||||||||| |||||||||||| ||||| || ||| Sbjct: 1751 aaaaaagaagaagaggaaagattagcagctgaagtagcaaagaaagcagaagaagaaaga 1810
Query: 1295 ttagcagttgaagcagca 1312 ||| ||| ||||||||| Sbjct: 1811 ttaacagcagaagcagca 1828
Score = 75.8 bits (38), Expect = 2e-13 Identities = 65/74 (87%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297 ||||| ||||| || |||||||||| |||||||||||||||||| ||||| || |||||| Sbjct: 1277 aaagctgaagaggagagattagcagttgaagcagcaaagaaagcagaagaagatagatta 1336
Query: 1298 gcagttgaagcagc 1311 |||| ||| ||||| Sbjct: 1337 gcagctgaggcagc 1350
Score = 73.8 bits (37), Expect = 1e-12 Identities = 46/49 (93%) Strand = Plus / Plus
Query: 1232 gccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaag 1280 ||||| ||||||||||| || |||||||||||||||||||||||||||| Sbjct: 1673 gccaagaaagcagaagaagaaagattagcagctgaagcagcaaagaaag 1721
Score = 71.9 bits (36), Expect = 4e-12 Identities = 69/80 (86%) Strand = Plus / Plus
Query: 1232 gccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggag 1291 ||||| ||||| ||||| | |||||||||||||||||||| || ||||| ||||| || Sbjct: 1517 gccaagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaagat 1576
Query: 1292 agattagcagttgaagcagc 1311 |||||||||| ||||||||| Sbjct: 1577 agattagcagctgaagcagc 1596
Score = 71.9 bits (36), Expect = 4e-12 Identities = 57/64 (89%) Strand = Plus / Plus
Query: 1243 agaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagattagcagt 1302 |||||| || ||||||||||| ||||||||||||||||| || || ||||||||||||| Sbjct: 1912 agaagaagaaagattagcagcagaagcagcaaagaaagcagaggaagagagattagcagc 1971
Query: 1303 tgaa 1306 |||| Sbjct: 1972 tgaa 1975
Score = 69.9 bits (35), Expect = 2e-11 Identities = 41/43 (95%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 |||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 1631 gcagcaaagaaagcagaagaagaaagattagcagctgaagcag 1673
Score = 69.9 bits (35), Expect = 2e-11 Identities = 65/75 (86%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297 |||| |||||| || ||||||||||| ||||||||||||||||| || || || |||||| Sbjct: 1832 aaagaagaagaggaaagattagcagcagaagcagcaaagaaagcagaggaagaaagatta 1891
Query: 1298 gcagttgaagcagca 1312 |||| ||||||||| Sbjct: 1892 gcagcagaagcagca 1906
Score = 69.9 bits (35), Expect = 2e-11 Identities = 41/43 (95%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 ||||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 1823 gcagcaaagaaagaagaagaggaaagattagcagcagaagcag 1865
Score = 63.9 bits (32), Expect = 9e-10 Identities = 47/52 (90%) Strand = Plus / Plus
Query: 2006 gcagcagttgcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 ||||||| ||||||||||||||||| || |||||||||||||| ||||||| Sbjct: 1853 gcagcagaagcagcaaagaaagcagaggaagaaagattagcagcagaagcag 1904
Score = 61.9 bits (31), Expect = 4e-09 Identities = 40/43 (93%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 ||||| |||||||||||||| |||||||||||||| ||||||| Sbjct: 1670 gcagccaagaaagcagaagaagaaagattagcagctgaagcag 1712
Score = 61.9 bits (31), Expect = 4e-09 Identities = 40/43 (93%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 ||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct: 1592 gcagccaagaaagcagaagaggagagattagcagctgaagcag 1634
Score = 58.0 bits (29), Expect = 6e-08 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297 |||||||| || || ||||||||||| ||||||||||||||| ||||| || |||||| Sbjct: 1871 aaagcagaggaagaaagattagcagcagaagcagcaaagaaa---gaagaagaaagatta 1927
Query: 1298 gcagttgaagcagca 1312 |||| ||||||||| Sbjct: 1928 gcagcagaagcagca 1942
Score = 58.0 bits (29), Expect = 6e-08 Identities = 38/41 (92%) Strand = Plus / Plus
Query: 2017 agcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 |||||||||||||||||| ||||||||| |||| ||||||| Sbjct: 1786 agcaaagaaagcagaagaagaaagattaacagcagaagcag 1826
Score = 54.0 bits (27), Expect = 9e-07 Identities = 33/35 (94%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagc 2049 |||||||||||||||||||| || ||||||||||| Sbjct: 1307 gcagcaaagaaagcagaagaagatagattagcagc 1341
Score = 54.0 bits (27), Expect = 9e-07 Identities = 39/43 (90%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 |||||||||||||| |||||||| |||||||||| ||||||| Sbjct: 1268 gcagcaaagaaagctgaagaggagagattagcagttgaagcag 1310
Score = 54.0 bits (27), Expect = 9e-07 Identities = 39/43 (90%) Strand = Plus / Plus
Query: 1268 gcagcaaagaaagctgaagaggagagattagcagttgaagcag 1310 |||||||||||||| |||||||| |||||||||| ||||||| Sbjct: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
Score = 54.0 bits (27), Expect = 9e-07 Identities = 51/59 (86%) Strand = Plus / Plus
Query: 1451 gaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacagattaacagc 1509 ||||||| |||||||||| |||||| || || |||||||||||||| |||||| |||| Sbjct: 1913 gaagaagaaagattagcagcagaagcagcaaagaaagcagaggaagagagattagcagc 1971
Score = 48.1 bits (24), Expect = 6e-05 Identities = 39/44 (88%) Strand = Plus / Plus
Query: 2006 gcagcagttgcagcaaagaaagcagaagaggaaagattagcagc 2049 ||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1928 gcagcagaagcagcaaagaaagcagaggaagagagattagcagc 1971
Score = 48.1 bits (24), Expect = 6e-05 Identities = 36/40 (90%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaag 2054 |||| ||| |||| ||||||||||||||||||||| |||| Sbjct: 1745 gcagtaaaaaaagaagaagaggaaagattagcagctgaag 1784
Score = 46.1 bits (23), Expect = 2e-04 Identities = 32/35 (91%) Strand = Plus / Plus
Query: 1133 gaagctgcaaagaaagtagaggaagatagattagc 1167 ||||| |||||||||| ||| |||||||||||||| Sbjct: 1304 gaagcagcaaagaaagcagaagaagatagattagc 1338
Score = 46.1 bits (23), Expect = 2e-04 Identities = 38/43 (88%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 ||||| || ||||||||||| || ||||||||||| ||||||| Sbjct: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcag 1595
Score = 46.1 bits (23), Expect = 2e-04 Identities = 38/43 (88%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 ||||| |||||||| ||||| ||||||||||||| ||||||| Sbjct: 1514 gcagccaagaaagctgaagaacaaagattagcagctgaagcag 1556
Score = 46.1 bits (23), Expect = 2e-04 Identities = 38/43 (88%) Strand = Plus / Plus
Query: 1514 gcagccaagaaagctgaagaacaaagattagcagctgaagcag 1556 ||||| |||||||| ||||| ||||||||||||| ||||||| Sbjct: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
Score = 46.1 bits (23), Expect = 2e-04 Identities = 38/43 (88%) Strand = Plus / Plus
Query: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcag 1595 ||||| || ||||||||||| || ||||||||||| ||||||| Sbjct: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
Score = 44.1 bits (22), Expect = 9e-04 Identities = 45/52 (86%), Gaps = 3/52 (5%) Strand = Plus / Plus
Query: 2006 gcagcagttgcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057 ||||||| ||||||||||||| |||||| |||||||||||| ||||||| Sbjct: 1892 gcagcagaagcagcaaagaaagaagaaga---aagattagcagcagaagcag 1940
Score = 44.1 bits (22), Expect = 9e-04 Identities = 31/34 (91%) Strand = Plus / Plus
Query: 2024 aaagcagaagaggaaagattagcagccgaagcag 2057 ||||||||||| || ||||||||||| ||||||| Sbjct: 1238 aaagcagaagatgacagattagcagctgaagcag 1271
Score = 44.1 bits (22), Expect = 9e-04 Identities = 31/34 (91%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaagcag 1271 ||||||||||| || ||||||||||| ||||||| Sbjct: 2024 aaagcagaagaggaaagattagcagccgaagcag 2057
Score = 42.1 bits (21), Expect = 0.003 Identities = 24/25 (96%) Strand = Plus / Plus
Query: 1388 aagaagagattagctgatgaacaag 1412 ||||| ||||||||||||||||||| Sbjct: 853 aagaaaagattagctgatgaacaag 877
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1729 aagattggcagctgaggcagt 1749 ||||||||||||||||||||| Sbjct: 1729 aagattggcagctgaggcagt 1749
Score = 42.1 bits (21), Expect = 0.003 Identities = 45/53 (84%) Strand = Plus / Plus
Query: 1142 aagaaagtagaggaagatagattagctgaactcgaaaagaaaagattagctga 1194 ||||||| ||| || || |||||||||||| | || ||||| ||||||||||| Sbjct: 1352 aagaaagaagaagaggagagattagctgaaattgagaagaagagattagctga 1404
Score = 40.1 bits (20), Expect = 0.014 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 1175 gaaaagaaaagattagctga 1194 |||||||||||||||||||| Sbjct: 850 gaaaagaaaagattagctga 869
Score = 36.2 bits (18), Expect = 0.21 Identities = 30/34 (88%) Strand = Plus / Plus
Query: 1484 aaagcagaggaagacagattaacagccgaagcag 1517 |||||||| || || |||||| |||||||||||| Sbjct: 2024 aaagcagaagaggaaagattagcagccgaagcag 2057
Score = 36.2 bits (18), Expect = 0.21 Identities = 30/34 (88%) Strand = Plus / Plus
Query: 2024 aaagcagaagaggaaagattagcagccgaagcag 2057 |||||||| || || |||||| |||||||||||| Sbjct: 1484 aaagcagaggaagacagattaacagccgaagcag 1517
Score = 36.2 bits (18), Expect = 0.21 Identities = 27/30 (90%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaa 1267 |||||||| || || ||||||||||||||| Sbjct: 1946 aaagcagaggaagagagattagcagctgaa 1975
Score = 36.2 bits (18), Expect = 0.21 Identities = 30/34 (88%) Strand = Plus / Plus
Query: 1168 tgaactcgaaaagaaaagattagctgaagaagaa 1201 ||||||||||||||| |||| || ||||||||| Sbjct: 981 tgaactcgaaaagaagagatcagaagaagaagaa 1014
Score = 36.2 bits (18), Expect = 0.21 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 860 gattagctgatgaacaag 877 |||||||||||||||||| Sbjct: 1395 gattagctgatgaacaag 1412
Score = 32.2 bits (16), Expect = 3.3 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 2015 gcagcaaagaaagcagaaga 2034 ||||||||||||| |||||| Sbjct: 1709 gcagcaaagaaagaagaaga 1728
Score = 32.2 bits (16), Expect = 3.3 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 1179 agaaaagattagctgaagaa 1198 |||| ||||||||||||||| Sbjct: 1053 agaagagattagctgaagaa 1072
Score = 32.2 bits (16), Expect = 3.3 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1389 agaagagattagctga 1404 |||||||||||||||| Sbjct: 1053 agaagagattagctga 1068
>Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Contig-U10870-1Q.Seq.d Length = 2986
Score = 87.7 bits (44), Expect = 6e-17 Identities = 53/56 (94%) Strand = Plus / Plus
Query: 2018 gcaaagaaagcagaagaggaaagattagcagccgaagcagaaaataaaagattaga 2073 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 2777 gcaaagaaagcagaggaggatagattagcagccgaagcagaaaagaaaagattaga 2832
Score = 63.9 bits (32), Expect = 9e-10 Identities = 32/32 (100%) Strand = Plus / Plus
Query: 1564 agcagaagaagatagattagcagctgaagcag 1595 |||||||||||||||||||||||||||||||| Sbjct: 2851 agcagaagaagatagattagcagctgaagcag 2882
Score = 58.0 bits (29), Expect = 6e-08 Identities = 41/45 (91%) Strand = Plus / Plus
Query: 2017 agcaaagaaagcagaagaggaaagattagcagccgaagcagaaaa 2061 |||||||| ||||||||| || ||||||||||| ||||||||||| Sbjct: 2842 agcaaagagagcagaagaagatagattagcagctgaagcagaaaa 2886
Score = 50.1 bits (25), Expect = 1e-05 Identities = 34/37 (91%) Strand = Plus / Plus
Query: 1240 agcagaagatgacagattagcagctgaagcagcaaag 1276 ||||||||| || ||||||||||||||||||| |||| Sbjct: 2851 agcagaagaagatagattagcagctgaagcagaaaag 2887
Score = 44.1 bits (22), Expect = 9e-04 Identities = 31/34 (91%) Strand = Plus / Plus
Query: 1562 aaagcagaagaagatagattagcagctgaagcag 1595 |||||||| || |||||||||||||| ||||||| Sbjct: 2783 aaagcagaggaggatagattagcagccgaagcag 2816
Score = 44.1 bits (22), Expect = 9e-04 Identities = 28/30 (93%) Strand = Plus / Plus
Query: 1138 tgcaaagaaagtagaggaagatagattagc 1167 ||||||||||| |||||| ||||||||||| Sbjct: 2776 tgcaaagaaagcagaggaggatagattagc 2805
Score = 44.1 bits (22), Expect = 9e-04 Identities = 37/42 (88%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaa 1279 |||||||| || || ||||||||||| ||||||| ||||||| Sbjct: 2783 aaagcagaggaggatagattagcagccgaagcagaaaagaaa 2824
Score = 44.1 bits (22), Expect = 9e-04 Identities = 31/34 (91%) Strand = Plus / Plus
Query: 1471 agaagctgccaaaaaagcagaggaagacagatta 1504 ||||| |||||||||||||||||| || |||||| Sbjct: 2686 agaagatgccaaaaaagcagaggaggatagatta 2719
Score = 44.1 bits (22), Expect = 9e-04 Identities = 31/34 (91%) Strand = Plus / Plus
Query: 1484 aaagcagaggaagacagattaacagccgaagcag 1517 ||||||||||| || |||||| |||||||||||| Sbjct: 2783 aaagcagaggaggatagattagcagccgaagcag 2816
Score = 42.1 bits (21), Expect = 0.003 Identities = 35/39 (89%), Gaps = 3/39 (7%) Strand = Plus / Plus
Query: 1175 gaaaagaaaagattagctgaagaagaacaaacaaagaaa 1213 ||||||||||||||||| |||||||||| |||||||| Sbjct: 2732 gaaaagaaaagattagc---agaagaacaagcaaagaaa 2767
Score = 42.1 bits (21), Expect = 0.003 Identities = 33/37 (89%) Strand = Plus / Plus
Query: 1520 aagaaagctgaagaacaaagattagcagctgaagcag 1556 |||| ||| |||||| | ||||||||||||||||||| Sbjct: 2846 aagagagcagaagaagatagattagcagctgaagcag 2882
Score = 42.1 bits (21), Expect = 0.003 Identities = 42/49 (85%) Strand = Plus / Plus
Query: 1231 tgccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaa 1279 ||||||||||||||| || || ||||||| ||| || |||| ||||||| Sbjct: 2692 tgccaaaaaagcagaggaggatagattagaagcagaggcagaaaagaaa 2740
Score = 40.1 bits (20), Expect = 0.014 Identities = 35/40 (87%) Strand = Plus / Plus
Query: 1271 gcaaagaaagctgaagaggagagattagcagttgaagcag 1310 ||||||||||| || ||||| |||||||||| ||||||| Sbjct: 2777 gcaaagaaagcagaggaggatagattagcagccgaagcag 2816
Score = 40.1 bits (20), Expect = 0.014 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 1231 tgccaaaaaagcagaagatg 1250 |||||||||||||||||||| Sbjct: 2674 tgccaaaaaagcagaagatg 2693
Score = 40.1 bits (20), Expect = 0.014 Identities = 26/28 (92%) Strand = Plus / Plus
Query: 1556 gccaaaaaagcagaagaagatagattag 1583 |||||||||||||| || |||||||||| Sbjct: 2693 gccaaaaaagcagaggaggatagattag 2720
Score = 40.1 bits (20), Expect = 0.014 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 1231 tgccaaaaaagcagaagatg 1250 |||||||||||||||||||| Sbjct: 2656 tgccaaaaaagcagaagatg 2675
Score = 36.2 bits (18), Expect = 0.21 Identities = 30/34 (88%) Strand = Plus / Plus
Query: 2037 aaagattagcagccgaagcagaaaataaaagatt 2070 |||||||||||| ||||||||||| ||||||| Sbjct: 2890 aaagattagcagatgaagcagaaaagcaaagatt 2923
Score = 34.2 bits (17), Expect = 0.84 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 1471 agaagctgccaaaaaagcaga 1491 ||||| ||||||||||||||| Sbjct: 2650 agaagatgccaaaaaagcaga 2670
Score = 34.2 bits (17), Expect = 0.84 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1556 gccaaaaaagcagaaga 1572 ||||||||||||||||| Sbjct: 2675 gccaaaaaagcagaaga 2691
Score = 34.2 bits (17), Expect = 0.84 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 1471 agaagctgccaaaaaagcaga 1491 ||||| ||||||||||||||| Sbjct: 2668 agaagatgccaaaaaagcaga 2688
Score = 34.2 bits (17), Expect = 0.84 Identities = 26/29 (89%) Strand = Plus / Plus
Query: 1139 gcaaagaaagtagaggaagatagattagc 1167 ||||||| || ||| |||||||||||||| Sbjct: 2843 gcaaagagagcagaagaagatagattagc 2871
Score = 34.2 bits (17), Expect = 0.84 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1556 gccaaaaaagcagaaga 1572 ||||||||||||||||| Sbjct: 2657 gccaaaaaagcagaaga 2673
Score = 34.2 bits (17), Expect = 0.84 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 1536 aaagattagcagctgaagcag 1556 |||||||||||| |||||||| Sbjct: 2890 aaagattagcagatgaagcag 2910
Score = 32.2 bits (16), Expect = 3.3 Identities = 22/24 (91%) Strand = Plus / Plus
Query: 1190 gctgaagaagaacaaacaaagaaa 1213 |||||||||||| || |||||||| Sbjct: 2603 gctgaagaagaagaagcaaagaaa 2626
Score = 32.2 bits (16), Expect = 3.3 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 681 agaagaacaagagaaa 696 |||||||||||||||| Sbjct: 271 agaagaacaagagaaa 286
Score = 32.2 bits (16), Expect = 3.3 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 1207 aaagaaattagcagaagaag 1226 ||||||||||| |||||||| Sbjct: 398 aaagaaattagaagaagaag 417
>Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Contig-U10985-1Q.Seq.d Length = 4897
Score = 46.1 bits (23), Expect = 2e-04 Identities = 26/27 (96%) Strand = Plus / Plus
Query: 1553 gcagccaaaaaagcagaagaagataga 1579 |||||||||| |||||||||||||||| Sbjct: 2845 gcagccaaaagagcagaagaagataga 2871
Database: CSM Posted date: Jun 21, 2004 1:35 PM Number of letters in database: 8,075,542 Number of sequences in database: 8402 Lambda K H 1.37 0.711 1.31
Gapped Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,755 Number of Sequences: 8402 Number of extensions: 23755 Number of successful extensions: 2803 Number of sequences better than 10.0: 141 length of query: 2100 length of database: 8,075,542 effective HSP length: 17 effective length of query: 2083 effective length of database: 7,932,708 effective search space: 16523830764 effective search space used: 16523830764 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 16 (32.2 bits)
|
dna update |
2009. 3. 9 |
Homology vs DNA |
Query= Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Contig-U16055-1Q.Seq.d (2100 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU061800) Dictyostelium discoideum slug cDNA, clone SLG140. 341 e-164 3 (C23699) Dictyostelium discoideum gamete cDNA, clone FC-AE18. 341 e-160 4 (BJ396240) Dictyostelium discoideum cDNA clone:dds41l24, 5' ... 551 e-155 2 (BJ388312) Dictyostelium discoideum cDNA clone:dds8n21, 5' e... 474 e-141 3 (BJ400138) Dictyostelium discoideum cDNA clone:dds8n21, 3' e... 341 e-137 2 (BJ402685) Dictyostelium discoideum cDNA clone:dds17n18, 3' ... 341 7e-89 1 (AU061340) Dictyostelium discoideum slug cDNA, clone SLD788. 157 8e-39 3 (BJ389423) Dictyostelium discoideum cDNA clone:dds18n18, 5' ... 109 1e-37 2 (BJ409464) Dictyostelium discoideum cDNA clone:dds41l24, 3' ... 109 7e-33 3 (AU039664) Dictyostelium discoideum slug cDNA, clone SLG140. 96 1e-30 4 (AU267382) Dictyostelium discoideum vegetative cDNA clone:VS... 137 2e-27 1 (AU267383) Dictyostelium discoideum vegetative cDNA clone:VS... 107 2e-18 1 (AU052696) Dictyostelium discoideum slug cDNA, clone SLD788. 94 1e-17 3 (BJ344100) Dictyostelium discoideum cDNA clone:dda18n10, 3' ... 56 3e-16 5 (BJ430078) Dictyostelium discoideum cDNA clone:ddv6b06, 3' e... 56 3e-16 5 (AU060572) Dictyostelium discoideum slug cDNA, clone SLK461. 50 5e-07 2 (BJ340195) Dictyostelium discoideum cDNA clone:dda12f05, 3' ... 44 7e-07 3 (DC210077) Plasmodium berghei strain ANKA cDNA clone:MG01068... 40 3e-04 3 (AU054031) Dictyostelium discoideum slug cDNA, clone SLK461. 42 0.011 2 (DC213733) Plasmodium berghei strain ANKA cDNA clone:MG01550... 40 0.021 3 (BM162954) EST565477 PyBS Plasmodium yoelii yoelii cDNA clon... 36 0.030 3 (EJ085929) 1095460106064 Global-Ocean-Sampling_GS-26-01-01-1... 42 0.050 2 (EJ879725) 1093018389396 Global-Ocean-Sampling_GS-30-02-01-1... 36 0.25 2 (EJ786660) 1093017322815 Global-Ocean-Sampling_GS-30-02-01-1... 36 0.26 2 (CN575646) rc56g07.x1 Meloidogyne hapla egg pAMP1 v1 Meloido... 50 0.34 1 (BM952226) rc56g07.y1 Meloidogyne hapla egg pAMP1 v1 Meloido... 50 0.34 1 (DC213558) Plasmodium berghei strain ANKA cDNA clone:MG01527... 44 0.45 2 (CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 38 0.60 2 (EK362257) 1095469163617 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.73 2 (EE405594) 17ACDHMS_UP_023_A07_28OCT2004_063 Brassica napus ... 38 0.97 2 (AM058766) Brassica oleracea var. alboglabra EST, clone AAF... 38 0.98 2 (CT743557) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.2 2 (L46371) Dictyostelium discoideum cortexillin II mRNA, compl... 38 1.3 4 (DC214797) Plasmodium berghei strain ANKA cDNA clone:MG01689... 40 1.3 2 (AC216675) Populus trichocarpa clone POP028-O03, complete se... 48 1.4 1 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 48 1.4 1 (ER387764) 1094428714667 Global-Ocean-Sampling_GS-34-01-01-1... 48 1.4 1 (EJ024311) 1095454014045 Global-Ocean-Sampling_GS-26-01-01-1... 48 1.4 1 (CT737520) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.4 2 (CT738431) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.4 2 (DC205339) Plasmodium berghei strain ANKA cDNA clone:MG00494... 44 1.4 2 (DC225195) Plasmodium berghei strain ANKA cDNA clone:SG00212... 36 1.5 2 (DC214476) Plasmodium berghei strain ANKA cDNA clone:MG01646... 44 1.5 2 (DC210093) Plasmodium berghei strain ANKA cDNA clone:MG01071... 44 1.6 2 (DC227829) Plasmodium berghei strain ANKA cDNA clone:SG01026... 44 1.7 2 (DC206726) Plasmodium berghei strain ANKA cDNA clone:MG00663... 44 1.7 2 (CT808629) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT737931) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.7 2 (CV718988) UCRCS08_0011E20_r Parent Washington Navel Orange ... 34 3.5 2 (BJ396737) Dictyostelium discoideum cDNA clone:dds43b23, 5' ... 36 3.6 2 (C92686) Dictyostelium discoideum slug cDNA, clone SSF837. 36 3.6 2 (C91997) Dictyostelium discoideum slug cDNA, clone SSC736. 36 3.6 2 (C91996) Dictyostelium discoideum slug cDNA, clone SSC734. 36 3.6 2 (AU076371) Dictyostelium discoideum slug cDNA, clone SSA663. 36 3.6 2 (BJ407822) Dictyostelium discoideum cDNA clone:dds43b23, 3' ... 36 3.6 2 (C90169) Dictyostelium discoideum slug cDNA, clone SSI174. 36 3.7 2 (C84251) Dictyostelium discoideum slug cDNA, clone SSB392. 36 3.7 2 (BZ398201) EINDN65TR EI_10_12_KB Entamoeba invadens genomic ... 34 4.9 3 (EA169353) Sequence 33668 from patent US 7214786. 46 5.4 1 (AC005908) Homo sapiens 12p13.3 BAC RPCI11-476M19 (Roswell P... 46 5.4 1 (ET089726) QM0AAA14BF04FM1 CCL1 Citrus clementina genomic cl... 46 5.4 1 (EK384775) 1095469477908 Global-Ocean-Sampling_GS-31-01-01-1... 46 5.4 1 (EJ767283) 1092963308697 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.4 1 (EJ756739) 1092963087757 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.4 1 (EJ484813) 1095403493046 Global-Ocean-Sampling_GS-28-01-01-1... 46 5.4 1 (CV641157) EST919910 Field isolate cDNA library Plasmodium v... 46 5.4 1 (CK160148) FGAS041697 Triticum aestivum FGAS: TaLt5 Triticum... 46 5.4 1 (BJ360228) Dictyostelium discoideum cDNA clone:ddc5e02, 5' e... 38 6.0 2 (DC215403) Plasmodium berghei strain ANKA cDNA clone:MG01768... 44 6.6 2 (EK228525) 1095460168118 Global-Ocean-Sampling_GS-31-01-01-1... 34 9.6 3 (EJ014647) 1095433013192 Global-Ocean-Sampling_GS-26-01-01-1... 38 9.6 2
>(AU061800) Dictyostelium discoideum slug cDNA, clone SLG140. Length = 628
Score = 341 bits (172), Expect(3) = e-164 Identities = 172/172 (100%) Strand = Plus / Plus
Query: 1093 aaaattgacagaggaagtagaggcaaacagagttgctcaagaagctgcaaagaaagtaga 1152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 aaaattgacagaggaagtagaggcaaacagagttgctcaagaagctgcaaagaaagtaga 295
Query: 1153 ggaagatagattagctgaactcgaaaagaaaagattagctgaagaagaacaaacaaagaa 1212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 ggaagatagattagctgaactcgaaaagaaaagattagctgaagaagaacaaacaaagaa 355
Query: 1213 attagcagaagaagccgctgccaaaaaagcagaagatgacagattagcagct 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 attagcagaagaagccgctgccaaaaaagcagaagatgacagattagcagct 407
Score = 165 bits (83), Expect(3) = e-164 Identities = 83/83 (100%) Strand = Plus / Plus
Query: 862 ttagctgatgaacaagccgctgttgcaaagaaacttgaaaatgatagattggctgctgaa 921 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 ttagctgatgaacaagccgctgttgcaaagaaacttgaaaatgatagattggctgctgaa 65
Query: 922 gaatctgaaaacaaaagattgac 944 ||||||||||||||||||||||| Sbjct: 66 gaatctgaaaacaaaagattgac 88
Score = 141 bits (71), Expect(3) = e-164 Identities = 71/71 (100%) Strand = Plus / Plus
Query: 1415 gcaaagagaattgctgaagaggaagctaaaagagccgaagaagccagattagcagaagaa 1474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 gcaaagagaattgctgaagaggaagctaaaagagccgaagaagccagattagcagaagaa 617
Query: 1475 gctgccaaaaa 1485 ||||||||||| Sbjct: 618 gctgccaaaaa 628
Score = 46.1 bits (23), Expect(4) = 5e-07 Identities = 32/35 (91%) Strand = Plus / Plus
Query: 1475 gctgccaaaaaagcagaggaagacagattaacagc 1509 ||||||||||||||||| || ||||||||| |||| Sbjct: 372 gctgccaaaaaagcagaagatgacagattagcagc 406
Score = 36.2 bits (18), Expect(4) = 5e-07 Identities = 30/34 (88%) Strand = Plus / Plus
Query: 1168 tgaactcgaaaagaaaagattagctgaagaagaa 1201 ||||||||||||||| |||| || ||||||||| Sbjct: 125 tgaactcgaaaagaagagatcagaagaagaagaa 158
Score = 30.2 bits (15), Expect(4) = 5e-07 Identities = 21/23 (91%) Strand = Plus / Plus
Query: 1451 gaagaagccagattagcagaaga 1473 |||||| | |||||||||||||| Sbjct: 210 gaagaatcaagattagcagaaga 232
Score = 26.3 bits (13), Expect(4) = 5e-07 Identities = 13/13 (100%) Strand = Plus / Plus
Query: 1736 gcagctgaggcag 1748 ||||||||||||| Sbjct: 480 gcagctgaggcag 492
Score = 46.1 bits (23), Expect(2) = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus
Query: 1133 gaagctgcaaagaaagtagaggaagatagattagc 1167 ||||| |||||||||| ||| |||||||||||||| Sbjct: 447 gaagcagcaaagaaagcagaagaagatagattagc 481
Score = 30.2 bits (15), Expect(2) = 0.14 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 1213 attagcagaagaagc 1227 ||||||||||||||| Sbjct: 605 attagcagaagaagc 619
Score = 38.2 bits (19), Expect(2) = 7.0 Identities = 25/27 (92%) Strand = Plus / Plus
Query: 1238 aaagcagaagatgacagattagcagct 1264 ||||||||||| || |||||||||||| Sbjct: 459 aaagcagaagaagatagattagcagct 485
Score = 32.2 bits (16), Expect(2) = 7.0 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 1179 agaaaagattagctgaagaa 1198 |||| ||||||||||||||| Sbjct: 196 agaagagattagctgaagaa 215
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 1,139,049,659 Number of extensions: 73508594 Number of successful extensions: 5784544 Number of sequences better than 10.0: 71 Length of query: 2100 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 2076 Effective length of database: 96,409,374,237 Effective search space: 200145860916012 Effective search space used: 200145860916012 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.20 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
3 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
3 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |