Contig-U16055-1
Contig ID Contig-U16055-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Contig-U16055-1Q.Seq.d
TAACAATCTTTTTCGCTCCTTCTGGTACAACTATTCAAAGAATTACTGAT
GATAAATTAAAATTTGGTGATGAAATTTATGATATTGATTCAACATTAGG
CAATAGAAAACCATCATATGAAGATTTAAATGATGCAACAAACACATTGG
TAGAAAATAATAAATTGGAAATTGATAAAAAGGTAGAACAAGGACAACAA
CAGGAAAACCCAAAATCTGAACCATCTTCTTCAAATACTACTGATACAAC
TCATACTCCAATCACTACCACTACCACCACAACAACAACAACTCCAACAA
CAACAACAACTCCAACTGTAACATCAACATTAGCAGAAAAAGAAAGAATT
GAAAAATTAGAAGAAGTAAAGAGAAGAAGCAAAACAACGTAGTAGAAAAA
GATGAAAAAGAACGTAAAGAACAAAGTACAAAAAGAAAGATTAGAGAAAG
AAAGAAAATTAAAACAAAAGATTGAAGAAGAGAAAGAGAGATTAAATCAA
CAAAAAGAAGAGGCAGAACGTGAAGAGCGTGAACAAGAACAAAGAAAGAG
AAAAGAAGAACAAGATCGTGTTAACAATGAAAAGAAACAAAGACAAGAAC
GTGAAGATGCTGAACACAGAGAAAAAACTTAGACTTAGAAATGAACAATT
GGAAAAGGAAAGACAAGAAATTCGTGATANAGAAGAACAAGAGAAACAAG
AGAAAGATCGTTTAGAAAAAGAACGTNGTGAAAAATTAAAACAAAGAAAT
GAACAATTGGATAAGGAAAGACAAGAGAAATTCAAAAAGGATCAAGAAGA
AAANCAAAAACA----------GAAAAACAAAGAAAATTAGAATTACAAG
AAAAGAAAAGATTAGCTGATGAACAAGCCGCTGTTGCAAAGAAACTTGAA
AATGATAGATTGGCTGCTGAAGAATCTGAAAACAAAAGATTGACAGAAGA
AGCTAGATTGGCTGAAGAAAAGAGATTGGTTGAACTCGAAAAGAAGAGAT
CAGAAGAAGAAGAAGCAAAGAGATTAGCAAGAGGAAGCTAGATTGGCAGA
AGAGAAGAGATTAGCTGAAGAATCAAGATTAGCAGAAGAGAAAAAATTGA
CAGAGGAAGTAGAGGCAAACAGAGTTGCTCAAGAAGCTGCAAAGAAAGTA
GAGGAAGATAGATTAGCTGAACTCGAAAAGAAAAGATTAGCTGAAGAAGA
ACAAACAAAGAAATTAGCAGAAGAAGCCGCTGCCAAAAAAGCAGAAGATG
ACAGATTAGCAGCTGAAGCAGCAAAGAAAGCTGAAGAGGAGAGATTAGCA
GTTGAAGCAGCAAAGAAAGCAGAAGAAGATAGATTAGCAGCTGAGGCAGC
CAAGAAAGAAGAAGAGGAGAGATTAGCTGAAATTGAGAAGAAGAGATTAG
CTGATGAACAAGAGGCAAAGAGAATTGCTGAAGAGGAAGCTAAAAGAGCC
GAAGAAGCCAGATTAGCAGAAGAAGCTGCCAAAAAAGCAGAGGAAGACAG
ATTAACAGCCGAAGCAGCCAAGAAAGCTGAAGAACAAAGATTAGCAGCTG
AAGCAGCCAAAAAAGCAGAAGAAGATAGATTAGCAGCTGAAGCAGCCAAG
AAAGCAGAAGAGGAGAGATTAGCAGCTGAAGCAGCAAAGAAAGCAGAAGA
AGAAAGATTAGCAGCTGAAGCAGCCAAGAAAGCAGAAGAAGAAAGATTAG
CAGCTGAAGCAGCAAAGAAAGAAGAAGAAAGATTGGCAGCTGAGGCAGTA
AAAAAAGAAGAAGAGGAAAGATTAGCAGCTGAAGTAGCAAAGAAAGCAGA
AGAAGAAAGATTAACAGCAGAAGCAGCAAAGAAAGAAGAAGAGGAAAGAT
TAGCAGCAGAAGCAGCAAAGAAAGCAGAGGAAGAAAGATTAGCAGCAGAA
GCAGCAAAGAAAGAAGAAGAAAGATTAGCAGCAGAAGCAGCAAAGAAAGC
AGAGGAAGAGAGATTAGCAGCTGAAAAAGAAGCTAAAAGAATTGCAGAAG
AAGTTGCAGCAGTTGCAGCAAAGAAAGCAGAAGAGGAAAGATTAGCAGCC
GAAGCAGAAAATAAAAGATTAGAGGATGAACAAAAAGCATTAAAAAAAAA

Gap gap included
Contig length 2090
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2742478
End point 2740389
Strand (PLUS/MINUS) MINUS
Number of clones 9
Number of EST 15
Link to clone list U16055
List of clone(s)

est1=SHI894F,1,630
est2=SFD787F,40,660
est3=VSH395Z,116,392
est4=VSH395F,139,407
est5=SFI471F,263,461
est6=SFI871F,481,812
est7=SLK461F,512,647
est8=SLD788F,813,1083
est9=SLG140F,847,1475
est10=FC-AE18E,888,1756
est11=SFD787Z,927,1721
est12=SFI471Z,927,1415
est13=SLG140Z,1555,2087
est14=SLK461Z,1625,1817
est15=SLD788Z,1905,2090
Translated Amino Acid sequence
*qsfslllvqlfkellmin*nlvmkfmiliqh*aienhhmki*mmqqthw*kiinwklik
r*nkdnnrktqnlnhllqilliqlilqslplppqqqqlqqqqqlql*hqh*qkkkelkn*
kk*reeakqrsrkr*krt*rtkykkkd*rkken*nkrlkkrkrd*INKKKRQNVKSVNKN
KEREKKNKIVLTMKRNKDKNVKMLNTEKKLRLRNEQLEKERQEIRDXEEQEKQEKDRLEK
ERXEKLKQRNEQLDKERQEKFKKDQEEXQK---

---EKQRKLELQEKKRLADEQAAVAKKLENDRLAAEESENKRLTEEARLAEEKRLVELEK
KRSEEEEAKRLARGS*igrreeis*rikisrrekidrgsrgkqscsrsckesrgr*is*t
rkekis*rrtnkeisrrsrcqksrr*qiss*sskes*rgeiss*sskesrrr*iss*gsq
errrgeis*n*eeeis**trgkenc*rgs*ksrrsqisrrscqksrgrqinsrssqes*r
tkiss*ssqksrrr*iss*ssqesrrgeiss*sskesrrrkiss*ssqesrrrkiss*ss
kerrrkigs*gskkrrrgkiss*sskesrrrkinsrsskerrrgkissrsskesrgrkis
srsskerrrkissrsskesrgreiss*krs*kncrrscsscskesrrgkissrsrk*kir
g*tksikkk


Translated Amino Acid sequence (All Frames)
Frame A:
*qsfslllvqlfkellmin*nlvmkfmiliqh*aienhhmki*mmqqthw*kiinwklik
r*nkdnnrktqnlnhllqilliqlilqslplppqqqqlqqqqqlql*hqh*qkkkelkn*
kk*reeakqrsrkr*krt*rtkykkkd*rkken*nkrlkkrkrd*INKKKRQNVKSVNKN
KEREKKNKIVLTMKRNKDKNVKMLNTEKKLRLRNEQLEKERQEIRDXEEQEKQEKDRLEK
ERXEKLKQRNEQLDKERQEKFKKDQEEXQK---

---EKQRKLELQEKKRLADEQAAVAKKLENDRLAAEESENKRLTEEARLAEEKRLVELEK
KRSEEEEAKRLARGS*igrreeis*rikisrrekidrgsrgkqscsrsckesrgr*is*t
rkekis*rrtnkeisrrsrcqksrr*qiss*sskes*rgeiss*sskesrrr*iss*gsq
errrgeis*n*eeeis**trgkenc*rgs*ksrrsqisrrscqksrgrqinsrssqes*r
tkiss*ssqksrrr*iss*ssqesrrgeiss*sskesrrrkiss*ssqesrrrkiss*ss
kerrrkigs*gskkrrrgkiss*sskesrrrkinsrsskerrrgkissrsskesrgrkis
srsskerrrkissrsskesrgreiss*krs*kncrrscsscskesrrgkissrsrk*kir
g*tksikkk

Frame B:
nnlfrsfwynyskny***ikiw**nl*y*fnirq*ktii*rfk*cnkhigrk**ign**k
grtrtttgkpki*tiffkyy*ynsysnhyhyhhnnnnsnnnnnsncninisrkrkn*kir
rskekkqnnvvekdekerkeqstkrkirerkkiktkd*rrereikstkrrgrt*ra*trt
kkekrrtrsc*q*ketktrt*rc*tqrknldlemnnwkrkdkkfvixknkrnkrkiv*kk
nvvkn*nkemnnwirkdkrnskrikkkxkn---

---knken*nykkrkd*lmnkpllqrnlkmidwllknlktkd*qkkldwlkkrdwlnskr
rdqkkkkqrd*qeearlaeekrlaeesrlaeekklteeveanrvaqeaakkveedrlael
ekkrlaeeeqtkklaeeaaakkaeddrlaaeaakkaeeerlaveaakkaeedrlaaeaak
keeeerlaeiekkrladeqeakriaeeeakraeearlaeeaakkaeedrltaeaakkaee
qrlaaeaakkaeedrlaaeaakkaeeerlaaeaakkaeeerlaaeaakkaeeerlaaeaa
kkeeerlaaeavkkeeeerlaaevakkaeeerltaeaakkeeeerlaaeaakkaeeerla
aeaakkeeerlaaeaakkaeeerlaaekeakriaeevaavaakkaeeerlaaeaenkrle
deqkalkk

Frame C:
tiffapsgttiqritddklkfgdeiydidstlgnrkpsyedlndatntlvennkleidkk
veqgqqqenpksepsssnttdtthtpittttttttttptttttptvtstlaekeriekle
evkrrsktt**kkmkknvknkvqkerlekerklkqkieeekerlnqqkeeaereereqeq
rkrkeeqdrvnnekkqrqeredaehrekt*t*k*tigkgktrns*xrrtretrersfrkr
tx*kiktkk*tig*gktreiqkgsrrkxkt---

---ktkkiritrkekis**tsrccket*k**igc*ri*kqkidrrs*ig*rkeig*trke
eirrrrskeiskrkldwqkrrd*lknqd*qkrkn*qrk*rqtellkklqrk*rkid*lns
krkd*lkknkqrn*qkkplpkkqkmtd*qlkqqrklkrrd*qlkqqrkqkkid*qlrqpr
kkkrrd*lklrrrd*lmnkrqrellkrklkepkkpd*qkklpkkqrktd*qpkqprklkn
kd*qlkqpkkqkkid*qlkqprkqkrrd*qlkqqrkqkkkd*qlkqprkqkkkd*qlkqq
rkkkkdwqlrq*kkkkrkd*qlk*qrkqkkkd*qqkqqrkkkrkd*qqkqqrkqrkkd*q
qkqqrkkkkd*qqkqqrkqrkrd*qlkkklkelqkklqqlqqrkqkrkd*qpkqkikd*r
mnkkh*kk

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16055-1 (Contig-U16055-1Q)
/CSM_Contig/Contig-U16055-1Q.Seq.d
(2100 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Conti... 551 e-156
Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Conti... 88 6e-17
Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U14345-1 (Contig-U14345-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U14497-1 (Contig-U14497-1Q) /CSM_Contig/Conti... 40 0.014
Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti... 40 0.014
Contig-U03947-1 (Contig-U03947-1Q) /CSM_Contig/Conti... 40 0.014
Contig-U16576-1 (Contig-U16576-1Q) /CSM_Contig/Conti... 38 0.054
Contig-U16575-1 (Contig-U16575-1Q) /CSM_Contig/Conti... 38 0.054
Contig-U16574-1 (Contig-U16574-1Q) /CSM_Contig/Conti... 38 0.054

>Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Contig-U16055-1Q.Seq.d
Length = 2100

Score = 551 bits (278), Expect = e-156
Identities = 278/278 (100%)
Strand = Plus / Plus


Query: 1 taacaatctttttcgctccttctggtacaactattcaaagaattactgatgataaattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taacaatctttttcgctccttctggtacaactattcaaagaattactgatgataaattaa 60


Query: 61 aatttggtgatgaaatttatgatattgattcaacattaggcaatagaaaaccatcatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttggtgatgaaatttatgatattgattcaacattaggcaatagaaaaccatcatatg 120


Query: 121 aagatttaaatgatgcaacaaacacattggtagaaaataataaattggaaattgataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagatttaaatgatgcaacaaacacattggtagaaaataataaattggaaattgataaaa 180


Query: 181 aggtagaacaaggacaacaacaggaaaacccaaaatctgaaccatcttcttcaaatacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtagaacaaggacaacaacaggaaaacccaaaatctgaaccatcttcttcaaatacta 240


Query: 241 ctgatacaactcatactccaatcactaccactaccacc 278
||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgatacaactcatactccaatcactaccactaccacc 278


Score = 507 bits (256), Expect = e-143
Identities = 256/256 (100%)
Strand = Plus / Plus


Query: 1057 gagattagctgaagaatcaagattagcagaagagaaaaaattgacagaggaagtagaggc 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gagattagctgaagaatcaagattagcagaagagaaaaaattgacagaggaagtagaggc 1116


Query: 1117 aaacagagttgctcaagaagctgcaaagaaagtagaggaagatagattagctgaactcga 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 aaacagagttgctcaagaagctgcaaagaaagtagaggaagatagattagctgaactcga 1176


Query: 1177 aaagaaaagattagctgaagaagaacaaacaaagaaattagcagaagaagccgctgccaa 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 aaagaaaagattagctgaagaagaacaaacaaagaaattagcagaagaagccgctgccaa 1236


Query: 1237 aaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatt 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 aaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatt 1296


Query: 1297 agcagttgaagcagca 1312
||||||||||||||||
Sbjct: 1297 agcagttgaagcagca 1312


Score = 452 bits (228), Expect = e-126
Identities = 228/228 (100%)
Strand = Plus / Plus


Query: 1373 ttagctgaaattgagaagaagagattagctgatgaacaagaggcaaagagaattgctgaa 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 ttagctgaaattgagaagaagagattagctgatgaacaagaggcaaagagaattgctgaa 1432


Query: 1433 gaggaagctaaaagagccgaagaagccagattagcagaagaagctgccaaaaaagcagag 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 gaggaagctaaaagagccgaagaagccagattagcagaagaagctgccaaaaaagcagag 1492


Query: 1493 gaagacagattaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaa 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 gaagacagattaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaa 1552


Query: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcagccaag 1600
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcagccaag 1600


Score = 371 bits (187), Expect = e-102
Identities = 193/193 (100%)
Strand = Plus / Plus


Query: 608 tgctgaacacagagaaaaaacttagacttagaaatgaacaattggaaaaggaaagacaag 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgctgaacacagagaaaaaacttagacttagaaatgaacaattggaaaaggaaagacaag 667


Query: 668 aaattcgtgatanagaagaacaagagaaacaagagaaagatcgtttagaaaaagaacgtn 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaattcgtgatanagaagaacaagagaaacaagagaaagatcgtttagaaaaagaacgtn 727


Query: 728 gtgaaaaattaaaacaaagaaatgaacaattggataaggaaagacaagagaaattcaaaa 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtgaaaaattaaaacaaagaaatgaacaattggataaggaaagacaagagaaattcaaaa 787


Query: 788 aggatcaagaaga 800
|||||||||||||
Sbjct: 788 aggatcaagaaga 800


Score = 224 bits (113), Expect = 4e-58
Identities = 113/113 (100%)
Strand = Plus / Plus


Query: 1979 gaagctaaaagaattgcagaagaagttgcagcagttgcagcaaagaaagcagaagaggaa 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1979 gaagctaaaagaattgcagaagaagttgcagcagttgcagcaaagaaagcagaagaggaa 2038


Query: 2039 agattagcagccgaagcagaaaataaaagattagaggatgaacaaaaagcatt 2091
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2039 agattagcagccgaagcagaaaataaaagattagaggatgaacaaaaagcatt 2091


Score = 202 bits (102), Expect = 2e-51
Identities = 102/102 (100%)
Strand = Plus / Plus


Query: 860 gattagctgatgaacaagccgctgttgcaaagaaacttgaaaatgatagattggctgctg 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gattagctgatgaacaagccgctgttgcaaagaaacttgaaaatgatagattggctgctg 919


Query: 920 aagaatctgaaaacaaaagattgacagaagaagctagattgg 961
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 aagaatctgaaaacaaaagattgacagaagaagctagattgg 961


Score = 168 bits (85), Expect = 2e-41
Identities = 127/141 (90%)
Strand = Plus / Plus


Query: 1460 agattagcagaagaagctgccaaaaaagcagaggaagacagattaacagccgaagcagcc 1519
|||||||||| ||||| |||||||||||||| ||||| |||||| |||| |||||||||
Sbjct: 1538 agattagcagctgaagcagccaaaaaagcagaagaagatagattagcagctgaagcagcc 1597


Query: 1520 aagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaagataga 1579
|||||||| ||||| | |||||||||||||||||||| || |||||||||||||| |||
Sbjct: 1598 aagaaagcagaagaggagagattagcagctgaagcagcaaagaaagcagaagaagaaaga 1657


Query: 1580 ttagcagctgaagcagccaag 1600
|||||||||||||||||||||
Sbjct: 1658 ttagcagctgaagcagccaag 1678


Score = 165 bits (83), Expect = 3e-40
Identities = 137/155 (88%)
Strand = Plus / Plus


Query: 1442 aaaagagccgaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacaga 1501
|||| ||| ||||||| |||||||||| ||||| ||||| |||||||| || || |||
Sbjct: 1559 aaaaaagcagaagaagatagattagcagctgaagcagccaagaaagcagaagaggagaga 1618


Query: 1502 ttaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaa 1561
||| |||| |||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct: 1619 ttagcagctgaagcagcaaagaaagcagaagaagaaagattagcagctgaagcagccaag 1678


Query: 1562 aaagcagaagaagatagattagcagctgaagcagc 1596
|||||||||||||| ||||||||||||||||||||
Sbjct: 1679 aaagcagaagaagaaagattagcagctgaagcagc 1713


Score = 159 bits (80), Expect = 2e-38
Identities = 127/142 (89%), Gaps = 3/142 (2%)
Strand = Plus / Plus


Query: 1462 attagcagaagaagc---tgccaaaaaagcagaggaagacagattaacagccgaagcagc 1518
||||||||||||||| ||||||||||||||| || ||||||||| |||| ||||||||
Sbjct: 1213 attagcagaagaagccgctgccaaaaaagcagaagatgacagattagcagctgaagcagc 1272


Query: 1519 caagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaagatag 1578
|||||||||||||| | |||||||||| ||||||||| || |||||||||||||||||
Sbjct: 1273 aaagaaagctgaagaggagagattagcagttgaagcagcaaagaaagcagaagaagatag 1332


Query: 1579 attagcagctgaagcagccaag 1600
|||||||||||| |||||||||
Sbjct: 1333 attagcagctgaggcagccaag 1354


Score = 133 bits (67), Expect = 1e-30
Identities = 124/143 (86%)
Strand = Plus / Plus


Query: 1454 gaagccagattagcagaagaagctgccaaaaaagcagaggaagacagattaacagccgaa 1513
|||| ||||||| ||| ||||| ||||| ||||| || ||| | |||||| |||| |||
Sbjct: 1493 gaagacagattaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaa 1552


Query: 1514 gcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaa 1573
|||||||| ||||| |||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcagccaagaaagcagaagag 1612


Query: 1574 gatagattagcagctgaagcagc 1596
|| ||||||||||||||||||||
Sbjct: 1613 gagagattagcagctgaagcagc 1635


Score = 123 bits (62), Expect = 1e-27
Identities = 115/132 (87%), Gaps = 3/132 (2%)
Strand = Plus / Plus


Query: 1460 agattagcagaagaagctgccaaaaaagcagaggaagacagattaacagccgaagcagcc 1519
|||||||||| |||||| || || |||||||||||||| |||||| |||| ||||||||
Sbjct: 1847 agattagcagcagaagcagcaaagaaagcagaggaagaaagattagcagcagaagcagca 1906


Query: 1520 aagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaagataga 1579
||||||| ||||| ||||||||||||| |||||||| || |||||||| ||||| |||
Sbjct: 1907 aagaaag---aagaagaaagattagcagcagaagcagcaaagaaagcagaggaagagaga 1963


Query: 1580 ttagcagctgaa 1591
||||||||||||
Sbjct: 1964 ttagcagctgaa 1975


Score = 121 bits (61), Expect = 5e-27
Identities = 76/81 (93%)
Strand = Plus / Plus


Query: 1232 gccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggag 1291
||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||
Sbjct: 1556 gccaaaaaagcagaagaagatagattagcagctgaagcagccaagaaagcagaagaggag 1615


Query: 1292 agattagcagttgaagcagca 1312
|||||||||| ||||||||||
Sbjct: 1616 agattagcagctgaagcagca 1636


Score = 115 bits (58), Expect = 3e-25
Identities = 100/114 (87%)
Strand = Plus / Plus


Query: 1460 agattagcagaagaagctgccaaaaaagcagaggaagacagattaacagccgaagcagcc 1519
|||||||||| ||||| || || |||||||| ||||| |||||| |||| |||||||||
Sbjct: 1616 agattagcagctgaagcagcaaagaaagcagaagaagaaagattagcagctgaagcagcc 1675


Query: 1520 aagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaa 1573
|||||||| |||||| |||||||||||||||||||||| || |||| |||||||
Sbjct: 1676 aagaaagcagaagaagaaagattagcagctgaagcagcaaagaaagaagaagaa 1729


Score = 113 bits (57), Expect = 1e-24
Identities = 99/113 (87%)
Strand = Plus / Plus


Query: 1484 aaagcagaggaagacagattaacagccgaagcagccaagaaagctgaagaacaaagatta 1543
|||||||| ||||| ||||||||||| |||||||| ||||||| ||||| ||||||||
Sbjct: 1793 aaagcagaagaagaaagattaacagcagaagcagcaaagaaagaagaagaggaaagatta 1852


Query: 1544 gcagctgaagcagccaaaaaagcagaagaagatagattagcagctgaagcagc 1596
||||| |||||||| || |||||||| ||||| ||||||||||| ||||||||
Sbjct: 1853 gcagcagaagcagcaaagaaagcagaggaagaaagattagcagcagaagcagc 1905


Score = 103 bits (52), Expect = 1e-21
Identities = 120/142 (84%), Gaps = 3/142 (2%)
Strand = Plus / Plus


Query: 1451 gaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacagattaacagcc 1510
||||||| |||||||||| ||||| ||||| |||||||| ||||| |||||| ||||
Sbjct: 1646 gaagaagaaagattagcagctgaagcagccaagaaagcagaagaagaaagattagcagct 1705


Query: 1511 gaagcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaa 1570
|||||||| ||||||| ||||| ||||||| |||||||| |||| ||||||| ||||
Sbjct: 1706 gaagcagcaaagaaag---aagaagaaagattggcagctgaggcagtaaaaaaagaagaa 1762


Query: 1571 gaagatagattagcagctgaag 1592
|| || ||||||||||||||||
Sbjct: 1763 gaggaaagattagcagctgaag 1784


Score = 103 bits (52), Expect = 1e-21
Identities = 73/80 (91%)
Strand = Plus / Plus


Query: 1232 gccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggag 1291
||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1595 gccaagaaagcagaagaggagagattagcagctgaagcagcaaagaaagcagaagaagaa 1654


Query: 1292 agattagcagttgaagcagc 1311
|||||||||| |||||||||
Sbjct: 1655 agattagcagctgaagcagc 1674


Score = 97.6 bits (49), Expect = 7e-20
Identities = 87/99 (87%), Gaps = 3/99 (3%)
Strand = Plus / Plus


Query: 1213 attagcagaagaagccgctgccaaaaaagcagaagatgacagattagcagctgaagcagc 1272
||||||||||||||| ||||||||||||||| || ||||||||| |||| ||||||||
Sbjct: 1462 attagcagaagaagc---tgccaaaaaagcagaggaagacagattaacagccgaagcagc 1518


Query: 1273 aaagaaagctgaagaggagagattagcagttgaagcagc 1311
|||||||||||||| | |||||||||| |||||||||
Sbjct: 1519 caagaaagctgaagaacaaagattagcagctgaagcagc 1557


Score = 93.7 bits (47), Expect = 1e-18
Identities = 68/75 (90%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297
||||||||||| || |||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1640 aaagcagaagaagaaagattagcagctgaagcagccaagaaagcagaagaagaaagatta 1699


Query: 1298 gcagttgaagcagca 1312
|||| ||||||||||
Sbjct: 1700 gcagctgaagcagca 1714


Score = 87.7 bits (44), Expect = 6e-17
Identities = 121/146 (82%), Gaps = 3/146 (2%)
Strand = Plus / Plus


Query: 1451 gaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacagattaacagcc 1510
||||||| |||||| ||| |||||| || || |||| ||| || || |||||| ||||
Sbjct: 1799 gaagaagaaagattaacagcagaagcagcaaagaaagaagaagaggaaagattagcagca 1858


Query: 1511 gaagcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaa 1570
|||||||| |||||||| || ||| ||||||||||||| |||||||| || || ||||
Sbjct: 1859 gaagcagcaaagaaagcagaggaagaaagattagcagcagaagcagcaaagaa---agaa 1915


Query: 1571 gaagatagattagcagctgaagcagc 1596
||||| ||||||||||| ||||||||
Sbjct: 1916 gaagaaagattagcagcagaagcagc 1941


Score = 87.7 bits (44), Expect = 6e-17
Identities = 98/116 (84%)
Strand = Plus / Plus


Query: 1481 aaaaaagcagaggaagacagattaacagccgaagcagccaagaaagctgaagaacaaaga 1540
||||||| ||| || || |||||| |||| |||| ||| |||||||| |||||| |||||
Sbjct: 1751 aaaaaagaagaagaggaaagattagcagctgaagtagcaaagaaagcagaagaagaaaga 1810


Query: 1541 ttagcagctgaagcagccaaaaaagcagaagaagatagattagcagctgaagcagc 1596
||| |||| |||||||| || |||| |||||| || ||||||||||| ||||||||
Sbjct: 1811 ttaacagcagaagcagcaaagaaagaagaagaggaaagattagcagcagaagcagc 1866


Score = 85.7 bits (43), Expect = 3e-16
Identities = 118/143 (82%)
Strand = Plus / Plus


Query: 1442 aaaagagccgaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacaga 1501
|||| ||| ||||| | ||||||||||| ||||| || || ||||| || || || |||
Sbjct: 1235 aaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagaga 1294


Query: 1502 ttaacagccgaagcagccaagaaagctgaagaacaaagattagcagctgaagcagccaaa 1561
||| ||| |||||||| |||||||| |||||| | |||||||||||||| ||||||||
Sbjct: 1295 ttagcagttgaagcagcaaagaaagcagaagaagatagattagcagctgaggcagccaag 1354


Query: 1562 aaagcagaagaagatagattagc 1584
|||| |||||| || ||||||||
Sbjct: 1355 aaagaagaagaggagagattagc 1377


Score = 77.8 bits (39), Expect = 6e-14
Identities = 66/75 (88%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297
||||||||||| || |||||| |||| |||||||||||||||| |||||||| ||||||
Sbjct: 1793 aaagcagaagaagaaagattaacagcagaagcagcaaagaaagaagaagaggaaagatta 1852


Query: 1298 gcagttgaagcagca 1312
|||| |||||||||
Sbjct: 1853 gcagcagaagcagca 1867


Score = 75.8 bits (38), Expect = 2e-13
Identities = 56/62 (90%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297
||||||||||| || |||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 1316 aaagcagaagaagatagattagcagctgaggcagccaagaaagaagaagaggagagatta 1375


Query: 1298 gc 1299
||
Sbjct: 1376 gc 1377


Score = 75.8 bits (38), Expect = 2e-13
Identities = 68/78 (87%)
Strand = Plus / Plus


Query: 1235 aaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagaga 1294
||||||| |||||| || |||||||||||||||| |||||||||||| ||||| || |||
Sbjct: 1751 aaaaaagaagaagaggaaagattagcagctgaagtagcaaagaaagcagaagaagaaaga 1810


Query: 1295 ttagcagttgaagcagca 1312
||| ||| |||||||||
Sbjct: 1811 ttaacagcagaagcagca 1828


Score = 75.8 bits (38), Expect = 2e-13
Identities = 65/74 (87%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297
||||| ||||| || |||||||||| |||||||||||||||||| ||||| || ||||||
Sbjct: 1277 aaagctgaagaggagagattagcagttgaagcagcaaagaaagcagaagaagatagatta 1336


Query: 1298 gcagttgaagcagc 1311
|||| ||| |||||
Sbjct: 1337 gcagctgaggcagc 1350


Score = 73.8 bits (37), Expect = 1e-12
Identities = 46/49 (93%)
Strand = Plus / Plus


Query: 1232 gccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaag 1280
||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 1673 gccaagaaagcagaagaagaaagattagcagctgaagcagcaaagaaag 1721


Score = 71.9 bits (36), Expect = 4e-12
Identities = 69/80 (86%)
Strand = Plus / Plus


Query: 1232 gccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggag 1291
||||| ||||| ||||| | |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 1517 gccaagaaagctgaagaacaaagattagcagctgaagcagccaaaaaagcagaagaagat 1576


Query: 1292 agattagcagttgaagcagc 1311
|||||||||| |||||||||
Sbjct: 1577 agattagcagctgaagcagc 1596


Score = 71.9 bits (36), Expect = 4e-12
Identities = 57/64 (89%)
Strand = Plus / Plus


Query: 1243 agaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagattagcagt 1302
|||||| || ||||||||||| ||||||||||||||||| || || |||||||||||||
Sbjct: 1912 agaagaagaaagattagcagcagaagcagcaaagaaagcagaggaagagagattagcagc 1971


Query: 1303 tgaa 1306
||||
Sbjct: 1972 tgaa 1975


Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
|||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 1631 gcagcaaagaaagcagaagaagaaagattagcagctgaagcag 1673


Score = 69.9 bits (35), Expect = 2e-11
Identities = 65/75 (86%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297
|||| |||||| || ||||||||||| ||||||||||||||||| || || || ||||||
Sbjct: 1832 aaagaagaagaggaaagattagcagcagaagcagcaaagaaagcagaggaagaaagatta 1891


Query: 1298 gcagttgaagcagca 1312
|||| |||||||||
Sbjct: 1892 gcagcagaagcagca 1906


Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 1823 gcagcaaagaaagaagaagaggaaagattagcagcagaagcag 1865


Score = 63.9 bits (32), Expect = 9e-10
Identities = 47/52 (90%)
Strand = Plus / Plus


Query: 2006 gcagcagttgcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
||||||| ||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 1853 gcagcagaagcagcaaagaaagcagaggaagaaagattagcagcagaagcag 1904


Score = 61.9 bits (31), Expect = 4e-09
Identities = 40/43 (93%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 1670 gcagccaagaaagcagaagaagaaagattagcagctgaagcag 1712


Score = 61.9 bits (31), Expect = 4e-09
Identities = 40/43 (93%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct: 1592 gcagccaagaaagcagaagaggagagattagcagctgaagcag 1634


Score = 58.0 bits (29), Expect = 6e-08
Identities = 64/75 (85%), Gaps = 3/75 (4%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaagctgaagaggagagatta 1297
|||||||| || || ||||||||||| ||||||||||||||| ||||| || ||||||
Sbjct: 1871 aaagcagaggaagaaagattagcagcagaagcagcaaagaaa---gaagaagaaagatta 1927


Query: 1298 gcagttgaagcagca 1312
|||| |||||||||
Sbjct: 1928 gcagcagaagcagca 1942


Score = 58.0 bits (29), Expect = 6e-08
Identities = 38/41 (92%)
Strand = Plus / Plus


Query: 2017 agcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
|||||||||||||||||| ||||||||| |||| |||||||
Sbjct: 1786 agcaaagaaagcagaagaagaaagattaacagcagaagcag 1826


Score = 54.0 bits (27), Expect = 9e-07
Identities = 33/35 (94%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagc 2049
|||||||||||||||||||| || |||||||||||
Sbjct: 1307 gcagcaaagaaagcagaagaagatagattagcagc 1341


Score = 54.0 bits (27), Expect = 9e-07
Identities = 39/43 (90%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
|||||||||||||| |||||||| |||||||||| |||||||
Sbjct: 1268 gcagcaaagaaagctgaagaggagagattagcagttgaagcag 1310


Score = 54.0 bits (27), Expect = 9e-07
Identities = 39/43 (90%)
Strand = Plus / Plus


Query: 1268 gcagcaaagaaagctgaagaggagagattagcagttgaagcag 1310
|||||||||||||| |||||||| |||||||||| |||||||
Sbjct: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057


Score = 54.0 bits (27), Expect = 9e-07
Identities = 51/59 (86%)
Strand = Plus / Plus


Query: 1451 gaagaagccagattagcagaagaagctgccaaaaaagcagaggaagacagattaacagc 1509
||||||| |||||||||| |||||| || || |||||||||||||| |||||| ||||
Sbjct: 1913 gaagaagaaagattagcagcagaagcagcaaagaaagcagaggaagagagattagcagc 1971


Score = 48.1 bits (24), Expect = 6e-05
Identities = 39/44 (88%)
Strand = Plus / Plus


Query: 2006 gcagcagttgcagcaaagaaagcagaagaggaaagattagcagc 2049
||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 1928 gcagcagaagcagcaaagaaagcagaggaagagagattagcagc 1971


Score = 48.1 bits (24), Expect = 6e-05
Identities = 36/40 (90%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaag 2054
|||| ||| |||| ||||||||||||||||||||| ||||
Sbjct: 1745 gcagtaaaaaaagaagaagaggaaagattagcagctgaag 1784


Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus


Query: 1133 gaagctgcaaagaaagtagaggaagatagattagc 1167
||||| |||||||||| ||| ||||||||||||||
Sbjct: 1304 gaagcagcaaagaaagcagaagaagatagattagc 1338


Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
||||| || ||||||||||| || ||||||||||| |||||||
Sbjct: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcag 1595


Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
||||| |||||||| ||||| ||||||||||||| |||||||
Sbjct: 1514 gcagccaagaaagctgaagaacaaagattagcagctgaagcag 1556


Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus


Query: 1514 gcagccaagaaagctgaagaacaaagattagcagctgaagcag 1556
||||| |||||||| ||||| ||||||||||||| |||||||
Sbjct: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057


Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus


Query: 1553 gcagccaaaaaagcagaagaagatagattagcagctgaagcag 1595
||||| || ||||||||||| || ||||||||||| |||||||
Sbjct: 2015 gcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057


Score = 44.1 bits (22), Expect = 9e-04
Identities = 45/52 (86%), Gaps = 3/52 (5%)
Strand = Plus / Plus


Query: 2006 gcagcagttgcagcaaagaaagcagaagaggaaagattagcagccgaagcag 2057
||||||| ||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 1892 gcagcagaagcagcaaagaaagaagaaga---aagattagcagcagaagcag 1940


Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus


Query: 2024 aaagcagaagaggaaagattagcagccgaagcag 2057
||||||||||| || ||||||||||| |||||||
Sbjct: 1238 aaagcagaagatgacagattagcagctgaagcag 1271


Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaagcag 1271
||||||||||| || ||||||||||| |||||||
Sbjct: 2024 aaagcagaagaggaaagattagcagccgaagcag 2057


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1388 aagaagagattagctgatgaacaag 1412
||||| |||||||||||||||||||
Sbjct: 853 aagaaaagattagctgatgaacaag 877


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1729 aagattggcagctgaggcagt 1749
|||||||||||||||||||||
Sbjct: 1729 aagattggcagctgaggcagt 1749


Score = 42.1 bits (21), Expect = 0.003
Identities = 45/53 (84%)
Strand = Plus / Plus


Query: 1142 aagaaagtagaggaagatagattagctgaactcgaaaagaaaagattagctga 1194
||||||| ||| || || |||||||||||| | || ||||| |||||||||||
Sbjct: 1352 aagaaagaagaagaggagagattagctgaaattgagaagaagagattagctga 1404


Score = 40.1 bits (20), Expect = 0.014
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1175 gaaaagaaaagattagctga 1194
||||||||||||||||||||
Sbjct: 850 gaaaagaaaagattagctga 869


Score = 36.2 bits (18), Expect = 0.21
Identities = 30/34 (88%)
Strand = Plus / Plus


Query: 1484 aaagcagaggaagacagattaacagccgaagcag 1517
|||||||| || || |||||| ||||||||||||
Sbjct: 2024 aaagcagaagaggaaagattagcagccgaagcag 2057


Score = 36.2 bits (18), Expect = 0.21
Identities = 30/34 (88%)
Strand = Plus / Plus


Query: 2024 aaagcagaagaggaaagattagcagccgaagcag 2057
|||||||| || || |||||| ||||||||||||
Sbjct: 1484 aaagcagaggaagacagattaacagccgaagcag 1517


Score = 36.2 bits (18), Expect = 0.21
Identities = 27/30 (90%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaa 1267
|||||||| || || |||||||||||||||
Sbjct: 1946 aaagcagaggaagagagattagcagctgaa 1975


Score = 36.2 bits (18), Expect = 0.21
Identities = 30/34 (88%)
Strand = Plus / Plus


Query: 1168 tgaactcgaaaagaaaagattagctgaagaagaa 1201
||||||||||||||| |||| || |||||||||
Sbjct: 981 tgaactcgaaaagaagagatcagaagaagaagaa 1014


Score = 36.2 bits (18), Expect = 0.21
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 860 gattagctgatgaacaag 877
||||||||||||||||||
Sbjct: 1395 gattagctgatgaacaag 1412


Score = 32.2 bits (16), Expect = 3.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 2015 gcagcaaagaaagcagaaga 2034
||||||||||||| ||||||
Sbjct: 1709 gcagcaaagaaagaagaaga 1728


Score = 32.2 bits (16), Expect = 3.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1179 agaaaagattagctgaagaa 1198
|||| |||||||||||||||
Sbjct: 1053 agaagagattagctgaagaa 1072


Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1389 agaagagattagctga 1404
||||||||||||||||
Sbjct: 1053 agaagagattagctga 1068


>Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Contig-U10870-1Q.Seq.d
Length = 2986

Score = 87.7 bits (44), Expect = 6e-17
Identities = 53/56 (94%)
Strand = Plus / Plus


Query: 2018 gcaaagaaagcagaagaggaaagattagcagccgaagcagaaaataaaagattaga 2073
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 2777 gcaaagaaagcagaggaggatagattagcagccgaagcagaaaagaaaagattaga 2832


Score = 63.9 bits (32), Expect = 9e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1564 agcagaagaagatagattagcagctgaagcag 1595
||||||||||||||||||||||||||||||||
Sbjct: 2851 agcagaagaagatagattagcagctgaagcag 2882


Score = 58.0 bits (29), Expect = 6e-08
Identities = 41/45 (91%)
Strand = Plus / Plus


Query: 2017 agcaaagaaagcagaagaggaaagattagcagccgaagcagaaaa 2061
|||||||| ||||||||| || ||||||||||| |||||||||||
Sbjct: 2842 agcaaagagagcagaagaagatagattagcagctgaagcagaaaa 2886


Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus


Query: 1240 agcagaagatgacagattagcagctgaagcagcaaag 1276
||||||||| || ||||||||||||||||||| ||||
Sbjct: 2851 agcagaagaagatagattagcagctgaagcagaaaag 2887


Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus


Query: 1562 aaagcagaagaagatagattagcagctgaagcag 1595
|||||||| || |||||||||||||| |||||||
Sbjct: 2783 aaagcagaggaggatagattagcagccgaagcag 2816


Score = 44.1 bits (22), Expect = 9e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 1138 tgcaaagaaagtagaggaagatagattagc 1167
||||||||||| |||||| |||||||||||
Sbjct: 2776 tgcaaagaaagcagaggaggatagattagc 2805


Score = 44.1 bits (22), Expect = 9e-04
Identities = 37/42 (88%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagctgaagcagcaaagaaa 1279
|||||||| || || ||||||||||| ||||||| |||||||
Sbjct: 2783 aaagcagaggaggatagattagcagccgaagcagaaaagaaa 2824


Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus


Query: 1471 agaagctgccaaaaaagcagaggaagacagatta 1504
||||| |||||||||||||||||| || ||||||
Sbjct: 2686 agaagatgccaaaaaagcagaggaggatagatta 2719


Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus


Query: 1484 aaagcagaggaagacagattaacagccgaagcag 1517
||||||||||| || |||||| ||||||||||||
Sbjct: 2783 aaagcagaggaggatagattagcagccgaagcag 2816


Score = 42.1 bits (21), Expect = 0.003
Identities = 35/39 (89%), Gaps = 3/39 (7%)
Strand = Plus / Plus


Query: 1175 gaaaagaaaagattagctgaagaagaacaaacaaagaaa 1213
||||||||||||||||| |||||||||| ||||||||
Sbjct: 2732 gaaaagaaaagattagc---agaagaacaagcaaagaaa 2767


Score = 42.1 bits (21), Expect = 0.003
Identities = 33/37 (89%)
Strand = Plus / Plus


Query: 1520 aagaaagctgaagaacaaagattagcagctgaagcag 1556
|||| ||| |||||| | |||||||||||||||||||
Sbjct: 2846 aagagagcagaagaagatagattagcagctgaagcag 2882


Score = 42.1 bits (21), Expect = 0.003
Identities = 42/49 (85%)
Strand = Plus / Plus


Query: 1231 tgccaaaaaagcagaagatgacagattagcagctgaagcagcaaagaaa 1279
||||||||||||||| || || ||||||| ||| || |||| |||||||
Sbjct: 2692 tgccaaaaaagcagaggaggatagattagaagcagaggcagaaaagaaa 2740


Score = 40.1 bits (20), Expect = 0.014
Identities = 35/40 (87%)
Strand = Plus / Plus


Query: 1271 gcaaagaaagctgaagaggagagattagcagttgaagcag 1310
||||||||||| || ||||| |||||||||| |||||||
Sbjct: 2777 gcaaagaaagcagaggaggatagattagcagccgaagcag 2816


Score = 40.1 bits (20), Expect = 0.014
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1231 tgccaaaaaagcagaagatg 1250
||||||||||||||||||||
Sbjct: 2674 tgccaaaaaagcagaagatg 2693


Score = 40.1 bits (20), Expect = 0.014
Identities = 26/28 (92%)
Strand = Plus / Plus


Query: 1556 gccaaaaaagcagaagaagatagattag 1583
|||||||||||||| || ||||||||||
Sbjct: 2693 gccaaaaaagcagaggaggatagattag 2720


Score = 40.1 bits (20), Expect = 0.014
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1231 tgccaaaaaagcagaagatg 1250
||||||||||||||||||||
Sbjct: 2656 tgccaaaaaagcagaagatg 2675


Score = 36.2 bits (18), Expect = 0.21
Identities = 30/34 (88%)
Strand = Plus / Plus


Query: 2037 aaagattagcagccgaagcagaaaataaaagatt 2070
|||||||||||| ||||||||||| |||||||
Sbjct: 2890 aaagattagcagatgaagcagaaaagcaaagatt 2923


Score = 34.2 bits (17), Expect = 0.84
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1471 agaagctgccaaaaaagcaga 1491
||||| |||||||||||||||
Sbjct: 2650 agaagatgccaaaaaagcaga 2670


Score = 34.2 bits (17), Expect = 0.84
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1556 gccaaaaaagcagaaga 1572
|||||||||||||||||
Sbjct: 2675 gccaaaaaagcagaaga 2691


Score = 34.2 bits (17), Expect = 0.84
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1471 agaagctgccaaaaaagcaga 1491
||||| |||||||||||||||
Sbjct: 2668 agaagatgccaaaaaagcaga 2688


Score = 34.2 bits (17), Expect = 0.84
Identities = 26/29 (89%)
Strand = Plus / Plus


Query: 1139 gcaaagaaagtagaggaagatagattagc 1167
||||||| || ||| ||||||||||||||
Sbjct: 2843 gcaaagagagcagaagaagatagattagc 2871


Score = 34.2 bits (17), Expect = 0.84
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1556 gccaaaaaagcagaaga 1572
|||||||||||||||||
Sbjct: 2657 gccaaaaaagcagaaga 2673


Score = 34.2 bits (17), Expect = 0.84
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1536 aaagattagcagctgaagcag 1556
|||||||||||| ||||||||
Sbjct: 2890 aaagattagcagatgaagcag 2910


Score = 32.2 bits (16), Expect = 3.3
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 1190 gctgaagaagaacaaacaaagaaa 1213
|||||||||||| || ||||||||
Sbjct: 2603 gctgaagaagaagaagcaaagaaa 2626


Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 681 agaagaacaagagaaa 696
||||||||||||||||
Sbjct: 271 agaagaacaagagaaa 286


Score = 32.2 bits (16), Expect = 3.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1207 aaagaaattagcagaagaag 1226
||||||||||| ||||||||
Sbjct: 398 aaagaaattagaagaagaag 417


>Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Contig-U10985-1Q.Seq.d
Length = 4897

Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 1553 gcagccaaaaaagcagaagaagataga 1579
|||||||||| ||||||||||||||||
Sbjct: 2845 gcagccaaaagagcagaagaagataga 2871


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,755
Number of Sequences: 8402
Number of extensions: 23755
Number of successful extensions: 2803
Number of sequences better than 10.0: 141
length of query: 2100
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2083
effective length of database: 7,932,708
effective search space: 16523830764
effective search space used: 16523830764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 3. 9
Homology vs DNA
Query= Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Contig-U16055-1Q.Seq.d
(2100 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU061800) Dictyostelium discoideum slug cDNA, clone SLG140. 341 e-164 3
(C23699) Dictyostelium discoideum gamete cDNA, clone FC-AE18. 341 e-160 4
(BJ396240) Dictyostelium discoideum cDNA clone:dds41l24, 5' ... 551 e-155 2
(BJ388312) Dictyostelium discoideum cDNA clone:dds8n21, 5' e... 474 e-141 3
(BJ400138) Dictyostelium discoideum cDNA clone:dds8n21, 3' e... 341 e-137 2
(BJ402685) Dictyostelium discoideum cDNA clone:dds17n18, 3' ... 341 7e-89 1
(AU061340) Dictyostelium discoideum slug cDNA, clone SLD788. 157 8e-39 3
(BJ389423) Dictyostelium discoideum cDNA clone:dds18n18, 5' ... 109 1e-37 2
(BJ409464) Dictyostelium discoideum cDNA clone:dds41l24, 3' ... 109 7e-33 3
(AU039664) Dictyostelium discoideum slug cDNA, clone SLG140. 96 1e-30 4
(AU267382) Dictyostelium discoideum vegetative cDNA clone:VS... 137 2e-27 1
(AU267383) Dictyostelium discoideum vegetative cDNA clone:VS... 107 2e-18 1
(AU052696) Dictyostelium discoideum slug cDNA, clone SLD788. 94 1e-17 3
(BJ344100) Dictyostelium discoideum cDNA clone:dda18n10, 3' ... 56 3e-16 5
(BJ430078) Dictyostelium discoideum cDNA clone:ddv6b06, 3' e... 56 3e-16 5
(AU060572) Dictyostelium discoideum slug cDNA, clone SLK461. 50 5e-07 2
(BJ340195) Dictyostelium discoideum cDNA clone:dda12f05, 3' ... 44 7e-07 3
(DC210077) Plasmodium berghei strain ANKA cDNA clone:MG01068... 40 3e-04 3
(AU054031) Dictyostelium discoideum slug cDNA, clone SLK461. 42 0.011 2
(DC213733) Plasmodium berghei strain ANKA cDNA clone:MG01550... 40 0.021 3
(BM162954) EST565477 PyBS Plasmodium yoelii yoelii cDNA clon... 36 0.030 3
(EJ085929) 1095460106064 Global-Ocean-Sampling_GS-26-01-01-1... 42 0.050 2
(EJ879725) 1093018389396 Global-Ocean-Sampling_GS-30-02-01-1... 36 0.25 2
(EJ786660) 1093017322815 Global-Ocean-Sampling_GS-30-02-01-1... 36 0.26 2
(CN575646) rc56g07.x1 Meloidogyne hapla egg pAMP1 v1 Meloido... 50 0.34 1
(BM952226) rc56g07.y1 Meloidogyne hapla egg pAMP1 v1 Meloido... 50 0.34 1
(DC213558) Plasmodium berghei strain ANKA cDNA clone:MG01527... 44 0.45 2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 38 0.60 2
(EK362257) 1095469163617 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.73 2
(EE405594) 17ACDHMS_UP_023_A07_28OCT2004_063 Brassica napus ... 38 0.97 2
(AM058766) Brassica oleracea var. alboglabra EST, clone AAF... 38 0.98 2
(CT743557) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.2 2
(L46371) Dictyostelium discoideum cortexillin II mRNA, compl... 38 1.3 4
(DC214797) Plasmodium berghei strain ANKA cDNA clone:MG01689... 40 1.3 2
(AC216675) Populus trichocarpa clone POP028-O03, complete se... 48 1.4 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 48 1.4 1
(ER387764) 1094428714667 Global-Ocean-Sampling_GS-34-01-01-1... 48 1.4 1
(EJ024311) 1095454014045 Global-Ocean-Sampling_GS-26-01-01-1... 48 1.4 1
(CT737520) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.4 2
(CT738431) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.4 2
(DC205339) Plasmodium berghei strain ANKA cDNA clone:MG00494... 44 1.4 2
(DC225195) Plasmodium berghei strain ANKA cDNA clone:SG00212... 36 1.5 2
(DC214476) Plasmodium berghei strain ANKA cDNA clone:MG01646... 44 1.5 2
(DC210093) Plasmodium berghei strain ANKA cDNA clone:MG01071... 44 1.6 2
(DC227829) Plasmodium berghei strain ANKA cDNA clone:SG01026... 44 1.7 2
(DC206726) Plasmodium berghei strain ANKA cDNA clone:MG00663... 44 1.7 2
(CT808629) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT737931) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.7 2
(CV718988) UCRCS08_0011E20_r Parent Washington Navel Orange ... 34 3.5 2
(BJ396737) Dictyostelium discoideum cDNA clone:dds43b23, 5' ... 36 3.6 2
(C92686) Dictyostelium discoideum slug cDNA, clone SSF837. 36 3.6 2
(C91997) Dictyostelium discoideum slug cDNA, clone SSC736. 36 3.6 2
(C91996) Dictyostelium discoideum slug cDNA, clone SSC734. 36 3.6 2
(AU076371) Dictyostelium discoideum slug cDNA, clone SSA663. 36 3.6 2
(BJ407822) Dictyostelium discoideum cDNA clone:dds43b23, 3' ... 36 3.6 2
(C90169) Dictyostelium discoideum slug cDNA, clone SSI174. 36 3.7 2
(C84251) Dictyostelium discoideum slug cDNA, clone SSB392. 36 3.7 2
(BZ398201) EINDN65TR EI_10_12_KB Entamoeba invadens genomic ... 34 4.9 3
(EA169353) Sequence 33668 from patent US 7214786. 46 5.4 1
(AC005908) Homo sapiens 12p13.3 BAC RPCI11-476M19 (Roswell P... 46 5.4 1
(ET089726) QM0AAA14BF04FM1 CCL1 Citrus clementina genomic cl... 46 5.4 1
(EK384775) 1095469477908 Global-Ocean-Sampling_GS-31-01-01-1... 46 5.4 1
(EJ767283) 1092963308697 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.4 1
(EJ756739) 1092963087757 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.4 1
(EJ484813) 1095403493046 Global-Ocean-Sampling_GS-28-01-01-1... 46 5.4 1
(CV641157) EST919910 Field isolate cDNA library Plasmodium v... 46 5.4 1
(CK160148) FGAS041697 Triticum aestivum FGAS: TaLt5 Triticum... 46 5.4 1
(BJ360228) Dictyostelium discoideum cDNA clone:ddc5e02, 5' e... 38 6.0 2
(DC215403) Plasmodium berghei strain ANKA cDNA clone:MG01768... 44 6.6 2
(EK228525) 1095460168118 Global-Ocean-Sampling_GS-31-01-01-1... 34 9.6 3
(EJ014647) 1095433013192 Global-Ocean-Sampling_GS-26-01-01-1... 38 9.6 2

>(AU061800) Dictyostelium discoideum slug cDNA, clone SLG140.
Length = 628

Score = 341 bits (172), Expect(3) = e-164
Identities = 172/172 (100%)
Strand = Plus / Plus


Query: 1093 aaaattgacagaggaagtagaggcaaacagagttgctcaagaagctgcaaagaaagtaga 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aaaattgacagaggaagtagaggcaaacagagttgctcaagaagctgcaaagaaagtaga 295


Query: 1153 ggaagatagattagctgaactcgaaaagaaaagattagctgaagaagaacaaacaaagaa 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggaagatagattagctgaactcgaaaagaaaagattagctgaagaagaacaaacaaagaa 355


Query: 1213 attagcagaagaagccgctgccaaaaaagcagaagatgacagattagcagct 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attagcagaagaagccgctgccaaaaaagcagaagatgacagattagcagct 407

Score = 165 bits (83), Expect(3) = e-164
Identities = 83/83 (100%)
Strand = Plus / Plus


Query: 862 ttagctgatgaacaagccgctgttgcaaagaaacttgaaaatgatagattggctgctgaa 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttagctgatgaacaagccgctgttgcaaagaaacttgaaaatgatagattggctgctgaa 65


Query: 922 gaatctgaaaacaaaagattgac 944
|||||||||||||||||||||||
Sbjct: 66 gaatctgaaaacaaaagattgac 88

Score = 141 bits (71), Expect(3) = e-164
Identities = 71/71 (100%)
Strand = Plus / Plus


Query: 1415 gcaaagagaattgctgaagaggaagctaaaagagccgaagaagccagattagcagaagaa 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcaaagagaattgctgaagaggaagctaaaagagccgaagaagccagattagcagaagaa 617


Query: 1475 gctgccaaaaa 1485
|||||||||||
Sbjct: 618 gctgccaaaaa 628

Score = 46.1 bits (23), Expect(4) = 5e-07
Identities = 32/35 (91%)
Strand = Plus / Plus


Query: 1475 gctgccaaaaaagcagaggaagacagattaacagc 1509
||||||||||||||||| || ||||||||| ||||
Sbjct: 372 gctgccaaaaaagcagaagatgacagattagcagc 406

Score = 36.2 bits (18), Expect(4) = 5e-07
Identities = 30/34 (88%)
Strand = Plus / Plus


Query: 1168 tgaactcgaaaagaaaagattagctgaagaagaa 1201
||||||||||||||| |||| || |||||||||
Sbjct: 125 tgaactcgaaaagaagagatcagaagaagaagaa 158

Score = 30.2 bits (15), Expect(4) = 5e-07
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 1451 gaagaagccagattagcagaaga 1473
|||||| | ||||||||||||||
Sbjct: 210 gaagaatcaagattagcagaaga 232

Score = 26.3 bits (13), Expect(4) = 5e-07
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 1736 gcagctgaggcag 1748
|||||||||||||
Sbjct: 480 gcagctgaggcag 492

Score = 46.1 bits (23), Expect(2) = 0.14
Identities = 32/35 (91%)
Strand = Plus / Plus


Query: 1133 gaagctgcaaagaaagtagaggaagatagattagc 1167
||||| |||||||||| ||| ||||||||||||||
Sbjct: 447 gaagcagcaaagaaagcagaagaagatagattagc 481

Score = 30.2 bits (15), Expect(2) = 0.14
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1213 attagcagaagaagc 1227
|||||||||||||||
Sbjct: 605 attagcagaagaagc 619

Score = 38.2 bits (19), Expect(2) = 7.0
Identities = 25/27 (92%)
Strand = Plus / Plus


Query: 1238 aaagcagaagatgacagattagcagct 1264
||||||||||| || ||||||||||||
Sbjct: 459 aaagcagaagaagatagattagcagct 485

Score = 32.2 bits (16), Expect(2) = 7.0
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1179 agaaaagattagctgaagaa 1198
|||| |||||||||||||||
Sbjct: 196 agaagagattagctgaagaa 215

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,139,049,659
Number of extensions: 73508594
Number of successful extensions: 5784544
Number of sequences better than 10.0: 71
Length of query: 2100
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 2076
Effective length of database: 96,409,374,237
Effective search space: 200145860916012
Effective search space used: 200145860916012
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.20
Homology vs Protein
Query= Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Contig-U16055-1Q.Seq.d
(2100 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 629,781,681
Number of extensions: 6539234
Number of successful extensions: 25479
Number of sequences better than 10.0: 0
Number of HSP's gapped: 25465
Number of HSP's successfully gapped: 0
Length of query: 700
Length of database: 1,051,180,864
Length adjustment: 136
Effective length of query: 564
Effective length of database: 611,008,840
Effective search space: 344608985760
Effective search space used: 344608985760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.29 gvh: 0.04 alm: 0.69 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.02
nuc: 0.41 erl: 0.00 erm: 0.00 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U16055-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 3
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 3
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0