NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03226-1
Contig ID Contig-U03226-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03226-1 (Contig-U03226-1Q) /CSM_Contig/Contig-U03226-1Q.Seq.d
ACTGGGAATTTTCAAAAAAACTTAGTATTAACAGATGTTTAATTGAAGAT
ATAACTGGAGACCTCTCAACATAAAAAAAAGAATGCACCAAAGGTTGAAA
TAATAATGATTGACATTGTTGAAAAAATATTTAGAGATTGTACTACCATG
TTCACAAATTACTTTAAAGATGCTAAAATTGGAATAAAAAGAAAAGACCA
ATGTAGTGGAGTTAATTATTATATTTATTTGAAAGAGAAGAAGAAGATTG
TGAATTTTTAAAAAATAAATAGTCAGGTTGTTCATTTAAGTCAAGAAAAT
AGTAACAAATCTGAATCTTTAAATGGTAAATTAATAAAAAAAAAATTATA
ATTATATTTATGTTATTGAAAAAAAAA
Gap no gap
Contig length 377
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3341992
End point 3342369
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U03226
List of clone(s) 

est1=CFF645F,1,378
est2=CFF645Z,6,363
Translated Amino Acid sequence 
tgnfqknlvltdv*lki*LETSQHKKKNAPKVEIIMIDIVEKIFRDCTTMFTNYFKDAKI
GIKRKDQCSGVNYYIYLKEKKKIVNF*kinsqvvhlsqensnkseslngklikkkl*lyl
cy*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
tgnfqknlvltdv*lki*LETSQHKKKNAPKVEIIMIDIVEKIFRDCTTMFTNYFKDAKI
GIKRKDQCSGVNYYIYLKEKKKIVNF*kinsqvvhlsqensnkseslngklikkkl*lyl
cy*kk


Frame B:
lgifkkt*y*qmfn*rynwrplnikkrmhqrlk***ltllkkyleivlpcsqitlkmlkl
e*kektnvveliiifi*krrrrl*ifkk*ivrlfi*vkkivtnlnl*mvn**kknynyiy
viekk


Frame C:
wefskklsinrclieditgdlst*kkectkg*nnnd*hc*kni*rlyyhvhkll*rc*nw
nkkkrpm*ws*llylfereeedceflknk*sgcsfksrk**qi*ifkw*inkkkiiiifm
llkkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03226-1 (Contig-U03226-1Q)
/CSM_Contig/Contig-U03226-1Q.Seq.d
         (377 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03226-1 (Contig-U03226-1Q) /CSM_Contig/Conti...   583  e-167
Contig-U14849-1 (Contig-U14849-1Q) /CSM_Contig/Conti...    38  0.007
Contig-U12373-1 (Contig-U12373-1Q) /CSM_Contig/Conti...    38  0.007
Contig-U04448-1 (Contig-U04448-1Q) /CSM_Contig/Conti...    38  0.007
Contig-U13946-1 (Contig-U13946-1Q) /CSM_Contig/Conti...    36  0.026
Contig-U12941-1 (Contig-U12941-1Q) /CSM_Contig/Conti...    36  0.026
Contig-U14749-1 (Contig-U14749-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U14535-1 (Contig-U14535-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Conti...    30  1.6

>Contig-U03226-1 (Contig-U03226-1Q) /CSM_Contig/Contig-U03226-1Q.Seq.d
          Length = 377

 Score =  583 bits (294), Expect = e-167
 Identities = 330/348 (94%)
 Strand = Plus / Plus

                                                                       
Query: 21  cttagtattaacagatgtttaattgaagatataactggagacctctcaacatnnnnnnnn 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 21  cttagtattaacagatgtttaattgaagatataactggagacctctcaacataaaaaaaa 80

                                                                       
Query: 81  gaatgcaccaaaggttgaaataataatgattgacattgttgaaaaaatatttagagattg 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gaatgcaccaaaggttgaaataataatgattgacattgttgaaaaaatatttagagattg 140

                                                                       
Query: 141 tactaccatgttcacaaattactttaaagatgctaaaattggaataaaaagaaaagacca 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tactaccatgttcacaaattactttaaagatgctaaaattggaataaaaagaaaagacca 200

                                                                       
Query: 201 atgtagtggagttaattattatatttatttgaaagagaagaagaagattgtgaattttta 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtagtggagttaattattatatttatttgaaagagaagaagaagattgtgaattttta 260

                                                                       
Query: 261 aaaaataaatagtcaggttgttcatttaagtcaagaaaatagtaacaaatctgaatcttt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaataaatagtcaggttgttcatttaagtcaagaaaatagtaacaaatctgaatcttt 320

                                                           
Query: 321 aaatggtaaattaatnnnnnnnnnnttataattatatttatgttattg 368
           |||||||||||||||          |||||||||||||||||||||||
Sbjct: 321 aaatggtaaattaataaaaaaaaaattataattatatttatgttattg 368


>Contig-U14849-1 (Contig-U14849-1Q) /CSM_Contig/Contig-U14849-1Q.Seq.d
          Length = 956

 Score = 38.2 bits (19), Expect = 0.007
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 253 aatttttaaaaaataaata 271
           |||||||||||||||||||
Sbjct: 923 aatttttaaaaaataaata 941


>Contig-U12373-1 (Contig-U12373-1Q) /CSM_Contig/Contig-U12373-1Q.Seq.d
          Length = 2450

 Score = 38.2 bits (19), Expect = 0.007
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 212  ttaattattatatttattt 230
            |||||||||||||||||||
Sbjct: 2421 ttaattattatatttattt 2403


 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 176  aaattggaataaaa 189
            ||||||||||||||
Sbjct: 1075 aaattggaataaaa 1088


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,538
Number of Sequences: 6905
Number of extensions: 12538
Number of successful extensions: 1563
Number of sequences better than 10.0: 474
length of query: 377
length of database: 5,674,871
effective HSP length: 16
effective length of query: 361
effective length of database: 5,564,391
effective search space: 2008745151
effective search space used: 2008745151
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.28
Homology vs DNA 
Query= Contig-U03226-1 (Contig-U03226-1Q) /CSM_Contig/Contig-U03226-1Q.Seq.d
         (377 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ359000) Dictyostelium discoideum cDNA clone:ddc12i12, 5' ...   505   e-171  3
(BJ372376) Dictyostelium discoideum cDNA clone:ddc12i12, 3' ...   482   e-161  3
(AF272706) Arabidopsis thaliana BAC F7P1.                          42   8e-06  6
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    42   0.001  5
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.003  10
(BX005260) Zebrafish DNA sequence from clone DKEY-209F7 in l...    46   0.004  4
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    38   0.010  7
(AC091383) Rattus norvegicus clone CH230-1C9, *** SEQUENCING...    40   0.012  4
(ET071451) QM0AAA5CB06FM1 CCL1 Citrus clementina genomic clo...    32   0.015  3
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    36   0.041  10
(ER601086) 1093016244345 Global-Ocean-Sampling_GS-36-01-01-2...    36   0.048  2
(BB972670) Plasmodium berghei str. ANKA cDNA clone: OK002397...    50   0.060  1
(AC231362) Medicago truncatula clone mth2-34c4, WORKING DRAF...    40   0.079  5
(CR450729) Zebrafish DNA sequence from clone DKEYP-52C3 in l...    40   0.12   3
(CT027827) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.12   3
(AC187435) Callicebus moloch clone LB5-306M15, WORKING DRAFT...    38   0.12   7
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    34   0.13   7
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    34   0.13   8
(AC179836) Strongylocentrotus purpuratus clone R3-1012D6, WO...    36   0.14   4
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29...    42   0.15   5
(FP016157) Medicago truncatula chromosome 5 clone mth4-11o22...    42   0.16   4
(AC173407) Bos taurus clone CH240-178E11, WORKING DRAFT SEQU...    34   0.16   5
(AP010356) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   0.16   5
(CU024869) M.truncatula DNA sequence from clone MTH2-94B15 o...    36   0.18   5
(DR949933) EST1141472 Aquilegia cDNA library Aquilegia formo...    36   0.18   2
(AC174290) Medicago truncatula clone mth2-52e11, complete se...    40   0.20   5
(CR361563) Zebrafish DNA sequence from clone CH211-254L20 in...    34   0.24   4
(FJ493256) Gomphrena globosa photosystem II protein D1 (psbA...    36   0.24   2
(AC191630) Pan troglodytes BAC clone CH251-734J11 from chrom...    48   0.24   1
(AC188437) Pan troglodytes BAC clone CH251-721F7 from chromo...    48   0.24   1
(AC146154) Pan troglodytes BAC clone RP43-37E8 from chromoso...    48   0.24   1
(AC145984) Pan troglodytes BAC clone RP43-17F10 from chromos...    48   0.24   1
(CJ764974) Ipomoea nil cDNA clone:jmsf35b05, 3' end.               48   0.24   1
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    34   0.25   7
(BH679968) BOMFE42TF BO_2_3_KB Brassica oleracea genomic clo...    38   0.26   2
(AC202347) Medicago truncatula clone mth2-31l19, WORKING DRA...    40   0.27   5
(DX561324) GH_MBb0051D24f GH_MBb Gossypium hirsutum genomic ...    30   0.27   4
(AM463300) Vitis vinifera contig VV78X206316.9, whole genome...    40   0.30   3
(DY225509) ID0AAI5YO12RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    38   0.31   2
(AC210651) Populus trichocarpa clone POP051-P08, complete se...    34   0.32   8
(AM424193) Vitis vinifera contig VV78X190877.1, whole genome...    40   0.34   2
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    30   0.37   8
(EC432402) 133214032 Sea Urchin Tube Foot DH5 cDNA library S...    38   0.38   2
(AL596268) Human DNA sequence from clone RP11-504E21 on chro...    34   0.43   5
(AC212850) Populus trichocarpa clone POP046-C03, complete se...    34   0.44   5
(CU856287) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.50   3
(CR388068) Zebrafish DNA sequence from clone CH211-284A6 in ...    36   0.51   5
(CU928105) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   0.51   2
(CU914337) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   0.52   2
(AC150953) Bos taurus clone CH240-210F1, WORKING DRAFT SEQUE...    34   0.52   2
(AF402141) Schizophyllum commune mitochondrial DNA, complete...    38   0.55   4
(AX344608) Sequence 33 from Patent WO0200927.                      34   0.58   2
(CR854909) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   0.60   8
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    38   0.62   6
(AC189870) Macaca mulatta clone CH250-37N14, WORKING DRAFT S...    38   0.62   5
(AC099680) Homo sapiens chromosome 1 clone RP4-700A9, comple...    34   0.63   5
(CT956058) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.63   5
(EU028331) Glycine max clone BAC gmw1-89M01 genomic sequence.      34   0.64   7
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.64   8
(AC026554) Homo sapiens chromosome 3 clone RP11-635I10 map 3...    34   0.69   5
(AP008064) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   0.72   5
(AC107177) Rattus norvegicus clone CH230-208E5, WORKING DRAF...    40   0.73   6
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.75   6
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    42   0.75   7
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    38   0.75   6
(BA000023) Sulfolobus tokodaii str. 7 DNA, complete genome.        38   0.75   13
(AC025753) Homo sapiens chromosome 5 clone CTB-194O13, WORKI...    32   0.76   5
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    40   0.79   9
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion...    36   0.85   5
(L06178) Apis mellifera ligustica complete mitochondrial gen...    30   0.88   5
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.89   5
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   0.89   9
(AC220683) Bos taurus clone CH240-349K16, WORKING DRAFT SEQU...    40   0.92   4
(FG117575) PRAG-aac59d09.b1 Sand_fly_EST_Normalized Phleboto...    42   0.93   2
(CL869613) abe55g08.x1 Soybean methylation filtered genomic ...    34   0.94   3
(AC211300) Populus trichocarpa clone ACSB1009-A24, complete ...    46   0.94   1
(AC079967) Homo sapiens chromosome 8, clone RP11-1058B10, co...    46   0.94   1
(AC162354) Bos taurus clone CH240-111L12, WORKING DRAFT SEQU...    46   0.94   1
(AC147943) Oryctolagus cuniculus clone LB1-207O23, WORKING D...    46   0.94   1
(AC147853) Oryctolagus cuniculus clone LB1-173M17, WORKING D...    46   0.94   1
(AC126240) Felis catus clone RP86-603I3, WORKING DRAFT SEQUE...    46   0.94   1
(DU241889) 1098574193205 CHORI-243 Ovis aries genomic clone ...    46   0.94   1
(ES268833) 69JKME5D_T3_032_H07_01APR2005_049 69JKME5D Brassi...    46   0.94   1
(EE424593) 31ETGS12_UP_013_G07_07FEB2005_051 Brassica napus ...    46   0.94   1
(DY021168) 63JKCOT5_T3_015_F07_22JAN2005_053 63JKCOT5 Brassi...    46   0.94   1
(DC844780) Brassica rapa subsp. pekinensis mRNA, clone: BRes...    46   0.94   1
(CN736751) 26RDBNT_UP_019_C01_22JAN2004_011 Brassica napus 2...    46   0.94   1
(GO173706) CAGA45345.rev CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO170656) CAGA43877.rev CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO157983) CAGA37941.fwd CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO157982) CAGA37941.rev CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO152627) CAGA35402.fwd CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO152626) CAGA35402.rev CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO147499) CAGA3298.rev CAGA Alvinella pompejana Normalized ...    46   0.94   1
(GO130155) CAGA24100.fwd CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO130154) CAGA24100.rev CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO121100) CAGA1985.rev CAGA Alvinella pompejana Normalized ...    46   0.94   1
(GO116012) CAGA17300.fwd CAGA Alvinella pompejana Normalized...    46   0.94   1
(GO116011) CAGA17300.rev CAGA Alvinella pompejana Normalized...    46   0.94   1
(EV054516) BNSCS3CT_UP_223_B08_14MAY2007_062 Brassica napus ...    46   0.94   1
(ES981464) 40JKME7D_UP_047_C07_18JUN2006_059 Brassica napus ...    46   0.94   1
(ES913848) BNARO2GH_T3_029_D11_15DEC2006_089 Brassica napus ...    46   0.94   1
(AI650018) AEMTAG95 Aedes aegypti MT pSPORT Library Aedes ae...    36   0.95   2
(FK709989) Red06D06M13F Red male Aedes aegypti cDNA, mRNA se...    36   0.96   2
(AC172920) Bos taurus clone CH240-309D4, WORKING DRAFT SEQUE...    34   0.98   4
(EI725694) 2B421022K19TF BAC library from breast tumor sampl...    38   1.00   2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    44   1.00   6
(FG120389) PRAG-aac69c08.b1 Sand_fly_EST_Normalized Phleboto...    42   1.0    2
(DC218660) Plasmodium berghei strain ANKA cDNA clone:MG02195...    42   1.0    2
(AL845301) Zebrafish DNA sequence from clone CH211-112M17 in...    34   1.1    4
(FK710034) Red06H11M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.1    2
(AC163503) Bos taurus clone CH240-256B7, WORKING DRAFT SEQUE...    32   1.1    5
(AP002057) Arabidopsis thaliana genomic DNA, chromosome 3, B...    38   1.1    3
(AF226280) Campylobacter jejuni 81-176 virulence plasmid pVi...    30   1.2    6
(CP000550) Campylobacter jejuni subsp. jejuni 81-176 plasmid...    30   1.2    6
(AC230629) Bos taurus clone CH240-503H23, WORKING DRAFT SEQU...    34   1.2    5
(FK710129) Red07H11M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.2    2
(FK710061) Red07C02M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.2    2
(FK710216) Red08H11M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.2    2
(FK710218) Red09A01M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.3    2
(FK710299) Red09G10M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.3    2
(FK710193) Red08F08M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.3    2
(FK710165) Red08D03M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.3    2
(BX957274) Zebrafish DNA sequence from clone DKEY-155F10 in ...    38   1.3    6
(AC011746) Homo sapiens BAC clone RP11-332A19 from 2, comple...    36   1.3    5
(AB221038) Sus scrofa cd1b, cd1e, or10t1, or10j1, or10k1, or...    38   1.3    5
(AC008325) Drosophila melanogaster clone BACR05M06, complete...    38   1.3    3
(BM415122) OP20194 Mixed Stage EST's from Globodera pallida,...    40   1.4    2
(CR450831) Zebrafish DNA sequence from clone CH211-79O8 in l...    36   1.4    4
(AC189235) Brassica rapa subsp. pekinensis clone KBrB014D14,...    34   1.4    5
(CU302224) CH251-34M8, complete sequence.                          34   1.5    5
(CP000724) Alkaliphilus metalliredigens QYMF, complete genome.     32   1.5    2
(AY431279) Aedes aegypti ASAP ID: 34857 NADH dehydrogenase s...    36   1.5    2
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    32   1.5    6
(FK709598) Red01E03M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.6    2
(AC230325) Bos taurus clone CH240-512K17, WORKING DRAFT SEQU...    38   1.6    4
(FK709692) Red02E03M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.6    2
(FK709569) Red01B10M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.6    2
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    34   1.7    8
(FK709652) Red02A11M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.7    2
(FK709580) Red01C09M13F Red male Aedes aegypti cDNA, mRNA se...    36   1.7    2
(AC150604) Callithrix jacchus clone CH259-231F14, WORKING DR...    42   1.7    4
(AC191599) Medicago truncatula chromosome 2 BAC clone mth2-1...    36   1.7    5
(AC233054) Medicago truncatula clone mth2-70d13, WORKING DRA...    38   1.7    5
(CU927997) S.lycopersicum DNA sequence from clone LE_HBa-64G...    32   1.8    6
(AL138931) Human DNA sequence from clone RP11-552K17 on chro...    40   1.8    2
(AC121736) Rattus norvegicus clone CH230-69M2, *** SEQUENCIN...    34   1.8    2
(AC099435) Rattus norvegicus clone CH230-97E3, *** SEQUENCIN...    34   1.9    2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   1.9    5
(AC114713) Rattus norvegicus clone CH230-289B8, *** SEQUENCI...    34   1.9    2
(AC170481) Bos taurus clone CH240-213E21, WORKING DRAFT SEQU...    38   1.9    3
(AC074258) Trypanosoma brucei chromosome 6 clone RPCI93-2N9,...    34   1.9    2
(DX561367) GH_MBb0055L07r GH_MBb Gossypium hirsutum genomic ...    36   1.9    3
(AC233240) Choloepus hoffmanni clone CH281-441G8, WORKING DR...    32   1.9    2
(AP010365) Lotus japonicus genomic DNA, chromosome 3, clone:...    40   2.0    5
(AM444474) Vitis vinifera contig VV78X256660.5, whole genome...    40   2.0    2
(AM467735) Vitis vinifera, whole genome shotgun sequence, co...    34   2.0    2
(AC093708) Pan troglodytes clone RP43-150K4, WORKING DRAFT S...    38   2.1    5
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    36   2.1    6
(AM467794) Vitis vinifera contig VV79X002080.3, whole genome...    34   2.2    4
(EJ150510) 1092343756386 Global-Ocean-Sampling_GS-27-01-01-1...    32   2.2    3
(AC147383) Pan troglodytes BAC clone RP43-157C2 from chromos...    38   2.2    5
(AX345880) Sequence 951 from Patent WO0200928.                     40   2.3    2
(AM429364) Vitis vinifera contig VV78X140335.2, whole genome...    40   2.4    2
(AL161533) Arabidopsis thaliana DNA chromosome 4, contig fra...    38   2.4    6
(BX001055) Zebrafish DNA sequence from clone CH211-87M5 in l...    38   2.4    5
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   2.4    7
(AR584244) Sequence 1 from patent US 6797466.                      38   2.4    11
(AR271569) Sequence 1 from patent US 6503729.                      38   2.4    11
(AP010370) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   2.5    4
(AG390767) Mus musculus molossinus DNA, clone:MSMg01-207J09....    34   2.5    2
(EJ378469) 1092963752470 Global-Ocean-Sampling_GS-28-01-01-1...    32   2.5    2
(EK012203) 1092955202447 Global-Ocean-Sampling_GS-31-01-01-1...    32   2.5    2
(EK020348) 1092955296290 Global-Ocean-Sampling_GS-31-01-01-1...    32   2.5    2
(AC183337) Oryctolagus cuniculus clone LB1-162M15, complete ...    38   2.5    4
(CZ853554) OC__Ba0243O20.f OC__Ba Oryza coarctata genomic cl...    32   2.5    2
(AC131079) Mus musculus chromosome 14, clone RP23-434L17, co...    36   2.5    7
(CL019408) CH216-5D10_Sp6.1 CH216 Xenopus (Silurana) tropica...    34   2.5    3
(BD460245) Diagnosis of Diseases Associated with Cell Cycle.       34   2.6    3
(BD452167) Diagnosis of Diseases Associated with Cell Cycle.       34   2.6    3
(AX344185) Sequence 32 from Patent WO0200926.                      34   2.6    3
(AX251781) Sequence 42 from Patent WO0168911.                      34   2.6    3
(CI545138) Oryza sativa Japonica Group cDNA, clone: J10B0030...    32   2.6    2
(CI553631) Oryza sativa Japonica Group cDNA, clone: J10B0058...    32   2.6    2
(AM426691) Vitis vinifera contig VV78X107052.6, whole genome...    40   2.6    3
(AC181481) Strongylocentrotus purpuratus clone R3-1111G7, WO...    40   2.6    3
(AC079323) Homo sapiens chromosome 15 clone RP11-1147E18 map...    34   2.6    4
(DJ387386) Diagnosis of Diseases Associated with Apoptosis.        36   2.6    3
(AX345217) Sequence 288 from Patent WO0200928.                     36   2.6    3
(AX281294) Sequence 36 from Patent WO0177164.                      36   2.6    3
(DB760605) Apis mellifera head cDNA, RIKEN full-length enric...    38   2.7    2
(CN575096) rf72f12.x1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    30   2.8    3
(DB770694) Apis mellifera head cDNA, RIKEN full-length enric...    38   2.8    2
(AC157849) Oryctolagus cuniculus clone LB1-317O5, WORKING DR...    40   2.8    4
(DB771783) Apis mellifera head cDNA, RIKEN full-length enric...    38   2.8    2
(AC168259) Strongylocentrotus purpuratus clone R3-1001F13, W...    40   2.8    4
(DB768300) Apis mellifera head cDNA, RIKEN full-length enric...    38   2.9    2
(AM462747) Vitis vinifera contig VV78X159244.4, whole genome...    34   2.9    3
(DB777125) Apis mellifera head cDNA, RIKEN full-length enric...    38   2.9    2
(DB768587) Apis mellifera head cDNA, RIKEN full-length enric...    38   2.9    2
(AF442957) Ostrinia nubilalis mitochondrion, complete genome.      36   2.9    3
(AF467260) Ostrinia furnacalis mitochondrion, complete genome.     36   2.9    3
(AC198858) Dasypus novemcinctus clone VMRC5-248H9, complete ...    36   3.0    4
(AC073116) Homo sapiens chromosome 15 clone RP11-577I17, WOR...    34   3.0    5
(AM428052) Vitis vinifera contig VV78X060807.3, whole genome...    38   3.0    4
(AZ531223) ENTCB86TR Entamoeba histolytica Sheared DNA Entam...    30   3.1    3
(DB767867) Apis mellifera head cDNA, RIKEN full-length enric...    38   3.1    2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    32   3.2    8
(AC091047) Homo sapiens chromosome 8, clone RP11-102F4, comp...    38   3.2    4
(CL493715) SAIL_583_E03.v1 SAIL Collection Arabidopsis thali...    32   3.2    3
(BX936358) Zebrafish DNA sequence from clone CH211-159A10 in...    36   3.2    4
(AC152625) Bos taurus clone CH240-6I16, WORKING DRAFT SEQUEN...    40   3.3    2
(AC121017) Rattus norvegicus clone CH230-459H13, WORKING DRA...    40   3.3    3
(AC025510) Homo sapiens chromosome 4 clone RP11-673L23 map 4...    40   3.3    6
(AC121705) Rattus norvegicus clone CH230-348M11, WORKING DRA...    36   3.3    5
(AX344566) Sequence 17 from Patent WO0200932.                      32   3.3    7
(DQ855262) Glycine max clone BAC GM_WBa0026B13, *** SEQUENCI...    36   3.4    4
(AC005025) Homo sapiens clone GS464G18, *** SEQUENCING IN PR...    34   3.4    4
(AC115985) Homo sapiens chromosome 17 clone RP11-661L3 map 1...    36   3.5    4
(AC023798) Homo sapiens 3 BAC CTC-485N2 (Cal Tech Human BAC ...    34   3.5    7
(AC073475) Homo sapiens BAC clone RP11-679C8 from 4, complet...    40   3.5    4
(AZ547101) ENTDA86TR Entamoeba histolytica Sheared DNA Entam...    30   3.7    3
(EG998225) 031021NL19EPD00012E08 NL19EPD Neotyphodium lolii ...    32   3.7    3
(BX469922) Zebrafish DNA sequence from clone DKEY-30N5 in li...    44   3.7    1
(BC077252) Xenopus laevis proline-rich Vg1 mRNA-binding prot...    44   3.7    1
(BC063270) Xenopus laevis proline-rich Vg1 mRNA-binding prot...    44   3.7    1
(AY028920) Xenopus laevis proline-rich Vg1 mRNA-binding prot...    44   3.7    1
(AC145959) Gallus gallus chromosome UNK clone CH261-17M10, c...    44   3.7    1
(AL928949) Mouse DNA sequence from clone RP23-226K16 on chro...    44   3.7    1
(AL824710) Mouse DNA sequence from clone RP23-35E16 on chrom...    44   3.7    1
(AL808026) Mouse DNA sequence from clone RP23-200N16 on chro...    44   3.7    1
(AL805944) Mouse DNA sequence from clone RP24-387A5 on chrom...    44   3.7    1
(AL669920) Mouse DNA sequence from clone RP23-263C23 on chro...    44   3.7    1
(AC129937) Mus musculus chromosome 1, clone RP23-285G23, com...    44   3.7    1
(AC125339) Mus musculus BAC clone RP24-356P17 from chromosom...    44   3.7    1
(AC116706) Mus musculus chromosome 1, clone RP23-37D15, comp...    44   3.7    1
(DL002836) Humanized Immunoglobulin Loci.                          44   3.7    1
(CS015906) Sequence 105 from Patent WO2005007696.                  44   3.7    1
(AY495827) Oryctolagus cuniculus clone 179L1 kappa 1 light c...    44   3.7    1
(AC117697) Mus musculus clone RP23-451G12, WORKING DRAFT SEQ...    44   3.7    1
(AC095522) Rattus norvegicus clone CH230-7O11, *** SEQUENCIN...    44   3.7    1
(FP102758) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.7    1
(CU694621) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.7    1
(CU571007) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.7    1
(AC084696) Mus musculus strain C57BL6/J clone RP23-420F12, W...    44   3.7    1
(CU467952) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.7    1
(BX679661) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    44   3.7    1
(AC234277) Monodelphis domestica clone VMRC18-307A5, WORKING...    44   3.7    1
(AC183339) Oryctolagus cuniculus clone LB1-188H11, WORKING D...    44   3.7    1
(AC175788) Oryctolagus cuniculus clone LB1-174P10, WORKING D...    44   3.7    1
(AZ069164) RPCI-23-394M21.TVB RPCI-23 Mus musculus genomic c...    44   3.7    1
(EK317370) 1095462418084 Global-Ocean-Sampling_GS-31-01-01-1...    44   3.7    1
(EK302132) 1095462368427 Global-Ocean-Sampling_GS-31-01-01-1...    44   3.7    1
(EK212176) 1095460102580 Global-Ocean-Sampling_GS-31-01-01-1...    44   3.7    1
(EI452786) PV_GBa0053A09.r PV_GBa Phaseolus vulgaris genomic...    44   3.7    1
(EI428725) PV_GBa0019O03.f PV_GBa Phaseolus vulgaris genomic...    44   3.7    1
(DH105161) Oryzias latipes Fosmid clone:GOLWFno353_g01, forw...    44   3.7    1
(CR266152) Forward strand read from insert in 5'HPRT inserti...    44   3.7    1
(AG742732) Macaca fuscata fuscata DNA, clone: MSB2-203K09_R,...    44   3.7    1
(CC268544) CH261-112B19_Sp6.1 CH261 Gallus gallus genomic cl...    44   3.7    1
(AG058969) Pan troglodytes DNA, clone: PTB-046A08.F.               44   3.7    1
(EC824789) SME00009662 esmbsro2 Sawyeria marylandensis cDNA,...    44   3.7    1
(EC824171) SME00002929 esmbsro2 Sawyeria marylandensis cDNA,...    44   3.7    1
(EC823807) SME00003237 esmbsro2 Sawyeria marylandensis cDNA,...    44   3.7    1
(EC823425) SME00009332 esmbsro2 Sawyeria marylandensis cDNA,...    44   3.7    1
(EC276705) AGENCOURT_81619619 NICHD_XGC_limb_m Xenopus laevi...    44   3.7    1
(EB338107) CNSN01-F-146406-501 Normalized CNS library (juven...    44   3.7    1
(EB316434) CNSN01-F-082271-501 Normalized CNS library (juven...    44   3.7    1
(EB282168) CNSN01-F-001365-501 Normalized CNS library (juven...    44   3.7    1
(EB188336) PEG001-C-006976-501 Non-Normalized Pedal-Pleural ...    44   3.7    1
(DC129053) Xenopus laevis NBRP cDNA clone:xl320d12, 5' end.        44   3.7    1
(DC104960) Xenopus laevis NBRP cDNA clone:xl237i24, 5' end.        44   3.7    1
(DC099199) Xenopus laevis NBRP cDNA clone:rxl341g16, 3' end.       44   3.7    1
(DC096180) Xenopus laevis NBRP cDNA clone:rxl330e23, 3' end.       44   3.7    1
(DC095343) Xenopus laevis NBRP cDNA clone:rxl327f01, 3' end.       44   3.7    1
(DC093308) Xenopus laevis NBRP cDNA clone:rxl320d12, 3' end.       44   3.7    1
(DC093197) Xenopus laevis NBRP cDNA clone:rxl319n08, 3' end.       44   3.7    1
(DC092061) Xenopus laevis NBRP cDNA clone:rxl313m06, 3' end.       44   3.7    1
(DC091615) Xenopus laevis NBRP cDNA clone:rxl312c03, 3' end.       44   3.7    1
(DC091611) Xenopus laevis NBRP cDNA clone:rxl312b23, 3' end.       44   3.7    1
(DC086610) Xenopus laevis NBRP cDNA clone:rxl294a09, 3' end.       44   3.7    1
(DC084636) Xenopus laevis NBRP cDNA clone:rxl286l23, 3' end.       44   3.7    1
(DC080922) Xenopus laevis NBRP cDNA clone:rxl274a22, 3' end.       44   3.7    1
(DC073410) Xenopus laevis NBRP cDNA clone:rxl247b20, 3' end.       44   3.7    1
(DC073139) Xenopus laevis NBRP cDNA clone:rxl246b20, 3' end.       44   3.7    1
(DC072254) Xenopus laevis NBRP cDNA clone:rxl242o14, 3' end.       44   3.7    1
(DC070714) Xenopus laevis NBRP cDNA clone:rxl237i24, 3' end.       44   3.7    1
(DC070350) Xenopus laevis NBRP cDNA clone:rxl236f04, 3' end.       44   3.7    1
(DC067040) Xenopus laevis NBRP cDNA clone:rxl224j11, 3' end.       44   3.7    1
(DC041544) Xenopus laevis NBRP cDNA clone:xlk118k20ex, 5' end.     44   3.7    1
(DC031842) Xenopus laevis NBRP cDNA clone:rxlk164a02ex, 3' end.    44   3.7    1
(DC021756) Xenopus laevis NBRP cDNA clone:rxlk62o21ex, 3' end.     44   3.7    1
(DC021519) Xenopus laevis NBRP cDNA clone:rxlk62c14ex, 3' end.     44   3.7    1
(DC019346) Xenopus laevis NBRP cDNA clone:rxlk153b19ex, 3' end.    44   3.7    1
(DC016644) Xenopus laevis NBRP cDNA clone:rxlk144h23ex, 3' end.    44   3.7    1
(DC009270) Xenopus laevis NBRP cDNA clone:rxlk120p20ex, 3' end.    44   3.7    1
(DC005693) Xenopus laevis NBRP cDNA clone:rxlk109f11ex, 3' end.    44   3.7    1
(DC004381) Xenopus laevis NBRP cDNA clone:rxlk105c02ex, 3' end.    44   3.7    1
(AM862103) Crassostrea gigas EST, 5' end sequence, clone cdn...    44   3.7    1
(CX591346) TTE00024184 Amplicon Express - Conjugative Form T...    44   3.7    1
(AL917505) Danio rerio EST sequence, clone 033-D04-2.              44   3.7    1
(CO383023) AGENCOURT_26181030 Blumberg_Cho dorsal blastopore...    44   3.7    1
(CF284623) AGENCOURT_15206390 NICHD_XGC_Sp1 Xenopus laevis c...    44   3.7    1
(BP739342) Xenopus laevis NBRP cDNA clone:XL519h08ex, 3' end.      44   3.7    1
(BP732592) Xenopus laevis NBRP cDNA clone:XL488i07ex, 3' end.      44   3.7    1
(BP730150) Xenopus laevis NBRP cDNA clone:XL407f21ex, 3' end.      44   3.7    1
(BP729557) Xenopus laevis NBRP cDNA clone:XL478c14ex, 3' end.      44   3.7    1
(BP721448) Xenopus laevis NBRP cDNA clone:XL449k01ex, 3' end.      44   3.7    1
(BP720674) Xenopus laevis NBRP cDNA clone:XL446p12ex, 3' end.      44   3.7    1
(BP715174) Xenopus laevis NBRP cDNA clone:XL428o02ex, 3' end.      44   3.7    1
(BP711926) Xenopus laevis NBRP cDNA clone:XL416c08ex, 3' end.      44   3.7    1
(BP699715) Xenopus laevis NBRP cDNA clone:XL488i07ex, 5' end.      44   3.7    1
(BP696425) Xenopus laevis NBRP cDNA clone:XL407f21ex, 5' end.      44   3.7    1
(BP685570) Xenopus laevis NBRP cDNA clone:XL449k01ex, 5' end.      44   3.7    1
(BP684795) Xenopus laevis NBRP cDNA clone:XL446p12ex, 5' end.      44   3.7    1
(BP678121) Xenopus laevis NBRP cDNA clone:XL428o02ex, 5' end.      44   3.7    1
(BM192016) dai23g04.x1 NICHD_XGC_Emb4 Xenopus laevis cDNA cl...    44   3.7    1
(BI746828) rm32d02.y1 Meloidogyne arenaria egg pAMP1 v1 Chia...    44   3.7    1
(BG371424) dac48f12.x1 RIKEN Xenopus egg Xenopus laevis cDNA...    44   3.7    1
(BG021702) dg18d02.x1 Xenopus laevis gastrula non normalized...    44   3.7    1
(BF611067) dd87d06.x1 Wellcome CRC pcDNAI egg Xenopus laevis...    44   3.7    1
(BE679585) dc65h03.y1 NICHD_XGC_Emb1 Xenopus laevis cDNA clo...    44   3.7    1
(BE575949) dc65h03.x1 NICHD_XGC_Emb1 Xenopus laevis cDNA clo...    44   3.7    1
(FF578240) TTEDD70THB Tetrahymena thermophila conjugation cD...    44   3.7    1
(FF572984) TTECM06THB Tetrahymena thermophila conjugation cD...    44   3.7    1
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    34   3.7    10
(CU986300) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.8    4
(AC164354) Bos taurus clone CH240-135F14, *** SEQUENCING IN ...    42   3.8    2
(AC079608) Homo sapiens chromosome 2 clone RP11-53K17, WORKI...    36   3.8    5
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   3.8    9
(AC216767) Populus trichocarpa clone POP031-P03, complete se...    36   3.8    3
(AG328094) Mus musculus molossinus DNA, clone:MSMg01-116M20....    38   3.8    2
(AC189963) Glycine tomentella clone gtd1-72e2, WORKING DRAFT...    36   3.9    5
(AI649974) AEMTAF16 Aedes aegypti MT pSPORT Library Aedes ae...    34   3.9    2
(AI648327) AEMTAD35 Aedes aegypti MT pSPORT Library Aedes ae...    34   3.9    2
(AC108487) Homo sapiens chromosome 3 clone RP11-733E24, comp...    32   3.9    4
(DD061342) Methods and nucleic acids for the analysis of  he...    32   4.0    3
(DD061196) Methods and nucleic acids for the analysis of  he...    32   4.0    3
(AX598904) Sequence 244 from Patent WO02077272.                    32   4.0    3
(AX598758) Sequence 98 from Patent WO02077272.                     32   4.0    3
(EC916724) A02_ADRIANA_P13_ENTOMOLOGIA_011204_R01_CMR_3.12_E...    36   4.0    2
(AP004256) Oryza sativa Japonica Group genomic DNA, chromoso...    36   4.1    4
(AC005495) Homo sapiens chromosome 17, clone RP11-293K20, co...    36   4.2    4
(AC166023) Oryctolagus cuniculus clone LB1-316E17, WORKING D...    38   4.3    3
(CZ973211) 172885 Tomato MboI BAC Library Solanum lycopersic...    36   4.3    2
(FI081560) CHO_OF7075xh06r1.ab1 CHO_OF7 Nicotiana tabacum ge...    34   4.3    2
(CU914190) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   4.4    4
(ET413118) S0200J04_T7 CHORI-214 Salmo salar genomic clone S...    38   4.4    2
(AC002130) Genomic sequence for Arabidopsis thaliana BAC F1N...    32   4.4    5
(FH377966) CHO_OF4612xd05r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   4.4    2
(AC187002) Canis Familiaris chromosome 2, clone XX-427N1, co...    34   4.4    4
(AM479398) Vitis vinifera contig VV78X141920.29, whole genom...    42   4.5    2
(AC000119) Homo sapiens BAC clone CTB-104I4 from 7, complete...    34   4.5    4
(AP007932) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   4.5    5
(FH976610) CHO_OF6821xc17f1.ab1 CHO_OF6 Nicotiana tabacum ge...    34   4.5    2
(FH309660) CHO_OF4424xo19r1.ab1 CHO_OF4 Nicotiana tabacum ge...    34   4.5    2
(AC094931) Rattus norvegicus clone CH230-6D18, WORKING DRAFT...    36   4.5    5
(AC131517) Rattus norvegicus clone CH230-2B9, WORKING DRAFT ...    36   4.5    5
(AM459175) Vitis vinifera contig VV78X116671.6, whole genome...    32   4.6    4
(AC167075) Oryctolagus cuniculus clone LB1-170O23, WORKING D...    38   4.6    3
(AC018678) Homo sapiens BAC clone RP11-279E17 from 2, comple...    40   4.7    3
(AC026337) Homo sapiens 2 BAC RP11-105E24 (Roswell Park Canc...    40   4.7    3
(EJ019795) 1095448000120 Global-Ocean-Sampling_GS-26-01-01-1...    40   4.7    2
(AC162286) Mus musculus chromosome 5 clone RP23-454P22 map 5...    36   4.8    3
(AM449387) Vitis vinifera, whole genome shotgun sequence, co...    34   4.8    3
(AC122508) Mus musculus BAC clone RP24-427G15 from chromosom...    36   4.8    5
(DX552462) GH_MBb0042O01f GH_MBb Gossypium hirsutum genomic ...    34   4.8    2
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    30   4.9    5
(EK213076) 1095460105620 Global-Ocean-Sampling_GS-31-01-01-1...    34   4.9    2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    30   4.9    10
(EF647616) Solanum lycopersicum chromosome 9 clone C09HBa002...    38   4.9    4
(AL161493) Arabidopsis thaliana DNA chromosome 4, contig fra...    42   5.0    4
(AC200644) MACACA MULATTA BAC clone CH250-521P20 from chromo...    36   5.0    3
(AL162716) Human DNA sequence from clone RP11-339I24 on chro...    36   5.0    4
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    32   5.0    8
(AC159869) Bos taurus clone CH240-79G16, WORKING DRAFT SEQUE...    38   5.1    4
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    34   5.1    6
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    30   5.2    8
(CR940353) Theileria annulata genomic DNA chromosome 4.            32   5.3    14
(AR883750) Sequence 3 from patent US 7052893.                      38   5.3    3
(AR235865) Sequence 3 from patent US 6461847.                      38   5.3    3
(AC231176) Bos taurus clone CH240-87P6, WORKING DRAFT SEQUEN...    38   5.5    6
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   5.5    8
(CP000879) Petrotoga mobilis SJ95, complete genome.                40   5.5    11
(BX537348) Zebrafish DNA sequence from clone CH211-218O21 in...    40   5.5    4
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   5.6    12
(EY675249) CS00-C1-401-008-B07-CT.F Sweet orange leaf, infec...    34   5.6    2
(DX571400) AluPCR 5 CHORI-250 (Rhesus macaque) BAC Library M...    34   5.7    2
(AC155814) Mus musculus BAC clone RP24-137M22 from chromosom...    36   5.7    3
(AC157072) Bos taurus clone CH240-62N23, WORKING DRAFT SEQUE...    36   5.7    4
(AC166608) Oryctolagus cuniculus clone LB1-251L3, WORKING DR...    38   5.7    4
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    32   5.8    7
(AM439616) Vitis vinifera contig VV78X111396.7, whole genome...    42   5.8    2
(AM431663) Vitis vinifera contig VV78X108624.7, whole genome...    40   5.8    2
(AC163055) Bos taurus clone CH240-104B22, WORKING DRAFT SEQU...    38   5.8    4
(AC084807) Arabidopsis thaliana chromosome 1 BAC T18F15 geno...    32   6.0    4
(CU693467) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.1    6
(AC018968) Homo sapiens chromosome 11 clone RP11-684F2 map 1...    34   6.1    5
(EU477538) Tetrahymena thermophila phosphoglucomutase (PGM1)...    36   6.1    3
(BB039450) Mus musculus 13 days embryo male testis cDNA, RIK...    34   6.2    2
(AC020097) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   6.4    4
(AC095050) Homo sapiens BAC clone RP11-287F9 from 4, complet...    38   6.4    4
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   6.4    7
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    34   6.5    7
(AM480216) Vitis vinifera contig VV78X039871.10, whole genom...    30   6.6    4
(AC161772) Bos taurus clone CH240-109N21, WORKING DRAFT SEQU...    30   6.8    2
(AC163585) Bos taurus clone CH240-130J12, WORKING DRAFT SEQU...    38   6.8    4
(AC153378) Mus musculus 6 BAC RP23-106C18 (Roswell Park Canc...    30   6.8    2
(AC187608) Pan troglodytes BAC clone CH251-687H5 from chromo...    30   6.8    2
(AC224671) Bos taurus clone CH240-479C13, WORKING DRAFT SEQU...    30   6.9    2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   6.9    7
(AC127325) Mus musculus BAC clone RP23-250E15 from 9, comple...    32   6.9    2
(AC147258) Mus musculus BAC clone RP24-297K13 from chromosom...    32   6.9    2
(AC162134) Loxodonta africana clone VMRC15-364M22, WORKING D...    30   6.9    2
(AP009545) Solanum lycopersicum DNA, chromosome 8, clone: C0...    32   7.0    2
(AC159948) Loxodonta africana clone VMRC15-570P1, WORKING DR...    30   7.0    2
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    32   7.0    6
(BP468204) Rattus norvegicus mRNA, clone:RBC02438, 3' end, e...    36   7.0    2
(AP005306) Oryza sativa Japonica Group genomic DNA, chromoso...    34   7.0    5
(AC149995) Strongylocentrotus purpuratus clone R3-60J17, WOR...    32   7.0    6
(AC152243) Bos taurus clone CH240-7N13, WORKING DRAFT SEQUEN...    38   7.1    4
(AP006369) Lotus japonicus genomic DNA, chromosome 4, clone:...    38   7.1    4
(AB008270) Arabidopsis thaliana genomic DNA, chromosome 5, P...    38   7.1    3
(AC230199) Bos taurus clone CH240-518N16, WORKING DRAFT SEQU...    34   7.1    6
(AL035476) Plasmodium falciparum MAL4P3.                           28   7.2    11
(AM470218) Vitis vinifera contig VV78X254791.2, whole genome...    40   7.2    2
(EV242608) VV_PEd06h09.g1 Vitis vinifera cv. perlette LibD V...    34   7.2    2
(AC123322) Rattus norvegicus clone CH230-222D13, WORKING DRA...    36   7.3    3
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   7.4    8
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    32   7.4    7
(AC188121) Trichinella spiralis chromosome UNK clone TS195-4...    34   7.4    3
(AM482018) Vitis vinifera contig VV78X185417.1, whole genome...    38   7.4    2
(BD460547) Diagnosis of Diseases Associated with Cell Cycle.       40   7.4    2
(BD452469) Diagnosis of Diseases Associated with Cell Cycle.       40   7.4    2
(AX348872) Sequence 330 from Patent WO0202807.                     40   7.4    2
(AX344463) Sequence 310 from Patent WO0200926.                     40   7.4    2
(AX252083) Sequence 344 from Patent WO0168911.                     40   7.4    2
(FB571378) Sequence 245 from Patent EP1865317.                     32   7.4    3
(FB571322) Sequence 189 from Patent EP1865317.                     32   7.4    3
(AM479661) Vitis vinifera contig VV78X057311.10, whole genom...    34   7.5    3
(DQ855265) Glycine max clone BAC GM-WBb0040I14, *** SEQUENCI...    34   7.6    6
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    30   7.6    7
(CR392036) Zebrafish DNA sequence from clone DKEYP-23F6 in l...    34   7.7    4
(AM465884) Vitis vinifera contig VV78X018650.26, whole genom...    30   7.7    2
(AC184517) Strongylocentrotus purpuratus clone R3-3A13, WORK...    34   7.7    4
(AC226502) Solanum lycopersicum chromosome 2 clone C02HBa003...    42   7.7    3
(ER818615) PPTC280TR Solanum tuberosum RHPOTKEY BAC ends Sol...    36   7.8    2
(AC216415) Populus trichocarpa clone POP047-J03, complete se...    38   7.8    5
(AC212658) Solanum lycopersicum chromosome 7 clone C07SLm012...    34   7.9    6
(AC156034) Mus musculus chromosome 5 clone RP23-353K16, WORK...    38   8.0    4
(AC216691) Populus trichocarpa clone POP102-M12, complete se...    34   8.0    4
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   8.0    6
(AC181220) Strongylocentrotus purpuratus clone R3-4009A14, W...    34   8.0    4
(FP236474) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   8.1    2
(U87145) Toxoplasma gondii chloroplast, complete genome.           38   8.2    4
(CS374585) Sequence 688 from Patent WO2006034879.                  32   8.2    3
(CS374313) Sequence 416 from Patent WO2006034879.                  32   8.2    3
(FP102959) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   8.5    2
(AM457874) Vitis vinifera contig VV78X072854.6, whole genome...    32   8.5    2
(BX465854) Zebrafish DNA sequence from clone DKEY-208M10 in ...    32   8.5    5
(AC156263) Ornithorhynchus anatinus BAC clone OABb-370A1 fro...    40   8.6    2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    30   8.6    9
(AL844509) Plasmodium falciparum chromosome 13.                    34   8.6    8
(AC100178) Mus musculus clone RP23-53D3, LOW-PASS SEQUENCE S...    36   8.7    3
(AC157600) Mus musculus chromosome 16 clone RP23-143H15, WOR...    38   8.7    5
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   8.8    8
(AC134545) Mus musculus BAC clone RP24-470H2 from chromosome...    36   8.9    4
(AF267223) Candidatus Carsonella ruddii natural-host Russell...    30   8.9    2
(CG756795) P051-4-G04.yb Ppa EcoRI BAC Library Pristionchus ...    32   9.0    2
(DX523051) GH_MBb0036O20f GH_MBb Gossypium hirsutum genomic ...    32   9.1    2
(AC226507) Solanum lycopersicum chromosome 2 clone C02HBa013...    38   9.1    3
(EU161283) Solanum lycopersicum clone BAC L136C6 transcripti...    38   9.1    3
(AC122544) Genomic sequence for Lycopersicon esculentum, clo...    38   9.1    3
(AM474007) Vitis vinifera contig VV78X239823.1, whole genome...    32   9.1    2
(AC232791) Lama pacos clone CH246-491J19, WORKING DRAFT SEQU...    38   9.2    4
(CZ957337) 288521 Tomato EcoRI BAC Library Solanum lycopersi...    32   9.2    2
(DU713658) pyl40g06.b1 HK104 Caenorhabditis briggsae genomic...    34   9.2    2
(DU928845) 354977 Tomato EcoRI BAC Library Solanum lycopersi...    32   9.2    2
(CZ749523) OC__Ba0098P19.f OC__Ba Oryza coarctata genomic cl...    30   9.2    2
(AC226852) Tupaia belangeri clone CH275-190M24, WORKING DRAF...    36   9.3    5
(CT561410) A BAC library has been constructed from cultivar ...    30   9.3    2
(CU234150) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    32   9.4    6
(EB290958) CNSN01-F-021989-501 Normalized CNS library (juven...    30   9.4    2
(AL935136) Zebrafish DNA sequence from clone CH211-180B2.          32   9.5    5
(EB325541) CNSN01-F-103946-501 Normalized CNS library (juven...    30   9.5    2
(EV828594) FTSA420TF Tetrahymena thermophila SB210 cDNA libr...    32   9.5    2
(AC174418) Callicebus moloch clone LB5-285I22, WORKING DRAFT...    40   9.6    2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    32   9.6    6
(CU813196) A BAC library has been constructed from PN40024 g...    32   9.6    2
(BX901972) Zebrafish DNA sequence from clone DKEY-24H22 in l...    32   9.7    5
(AC149569) Papio anubis clone RP41-477D9, WORKING DRAFT SEQU...    36   9.7    2
(GD964734) 454GmaGlobSeed707383 Soybean Seeds Containing Glo...    32   9.8    2
(DB947706) Manihot esculenta mRNA, clone: CAS01_028_N14, 3'end.    32   9.8    2
(CP000025) Campylobacter jejuni RM1221, complete genome.           38   9.9    11
(AP007503) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   10.0   5
(CS468838) Sequence 29 from Patent EP1748080.                      32   10.0   4
(CS468837) Sequence 28 from Patent EP1748080.                      32   10.0   4
(CS419315) Sequence 29 from Patent WO2006094836.                   32   10.0   4
(CS419314) Sequence 28 from Patent WO2006094836.                   32   10.0   4

>(BJ359000) Dictyostelium discoideum cDNA clone:ddc12i12, 5' end,
           single read.
          Length = 377

 Score =  505 bits (255), Expect(3) = e-171
 Identities = 255/255 (100%)
 Strand = Plus / Plus


Query: 81  gaatgcaccaaaggttgaaataataatgattgacattgttgaaaaaatatttagagattg 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  gaatgcaccaaaggttgaaataataatgattgacattgttgaaaaaatatttagagattg 139


Query: 141 tactaccatgttcacaaattactttaaagatgctaaaattggaataaaaagaaaagacca 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tactaccatgttcacaaattactttaaagatgctaaaattggaataaaaagaaaagacca 199


Query: 201 atgtagtggagttaattattatatttatttgaaagagaagaagaagattgtgaattttta 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atgtagtggagttaattattatatttatttgaaagagaagaagaagattgtgaattttta 259


Query: 261 aaaaataaatagtcaggttgttcatttaagtcaagaaaatagtaacaaatctgaatcttt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaaataaatagtcaggttgttcatttaagtcaagaaaatagtaacaaatctgaatcttt 319


Query: 321 aaatggtaaattaat 335
           |||||||||||||||
Sbjct: 320 aaatggtaaattaat 334

 Score =  103 bits (52), Expect(3) = e-171
 Identities = 52/52 (100%)
 Strand = Plus / Plus


Query: 21 cttagtattaacagatgtttaattgaagatataactggagacctctcaacat 72
          ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 cttagtattaacagatgtttaattgaagatataactggagacctctcaacat 71

 Score = 46.1 bits (23), Expect(3) = e-171
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 346 ttataattatatttatgttattg 368
           |||||||||||||||||||||||
Sbjct: 345 ttataattatatttatgttattg 367

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 618,379,205
Number of extensions: 53912494
Number of successful extensions: 5386040
Number of sequences better than 10.0: 507
Length of query: 377
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 354
Effective length of database: 99,442,330,388
Effective search space: 35202584957352
Effective search space used: 35202584957352
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.27
Homology vs Protein 
Query= Contig-U03226-1 (Contig-U03226-1Q) /CSM_Contig/Contig-U03226-1Q.Seq.d
         (377 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE015927_2162(AE015927|pid:none) Clostridium tetani E88, complet...    35   1.1
CP001107_1067(CP001107|pid:none) Eubacterium rectale ATCC 33656,...    32   9.0

>AE015927_2162(AE015927|pid:none) Clostridium tetani E88, complete
           genome.
          Length = 160

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 154 TNYFKDAKIGIKRKDQCSGVNYYIYLKEKK-KIVNF*KINSQ 276
           TN F+ AK   KR  +C  +NYY Y++    KI+ F K+N +
Sbjct: 40  TNNFEQAKKWAKRNRKCPTINYYTYVENNDLKILRFEKMNDE 81

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 432,769,653
Number of extensions: 6619190
Number of successful extensions: 11320
Number of sequences better than 10.0: 2
Number of HSP's gapped: 11319
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 1,061,185,681
Length adjustment: 91
Effective length of query: 34
Effective length of database: 763,756,913
Effective search space: 25967735042
Effective search space used: 25967735042
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.63  gvh: 0.19  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.15  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U03226-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0