Contig-U16034-1
Contig ID Contig-U16034-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Contig-U16034-1Q.Seq.d
CTTCTTCCTCTTCATCTGATGAATCCGATGAGGATTATGAATCATCTTAT
CAACCATCTTTATCATTATCACAACCACAACCACCATCACCAAAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAATAACAACAAT
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACCAAAACAACAACAACCACCATCACCAAAACAACCATC
GTCACCAATTCAACAACAATATCAACAACAACATCAACAACAACATCAAC
CACAACAATTACAACAACAACAACAAACTAATCAAATGTTTATTCAACAA
CAACCATCAGATTCAATTGTTTGTAATCGTTATATTCATCCAGCCATTGT
TGTTTTGGTTGACCAAGAGGTAATTAGTCAAACCTCTGGTTATTTAATTG
TAAATGCTTCATTGGTTCAACACAATTCAAAGAATGTAAACACTAACAAC
AGCGAAAACCAATTACTCCAAGGTGTTAAAAGTGTTCTCGTTGAAAAGAA
TGGTGTTGTTATTTTCAACAAGTTGAAGCCAAGTGAACTCGCCGCCAAAC
TTCCTGGTCAATTATTCAGCATTTGTTTTACTCTTTCTGATATCTCATCA
GTTGATAAACAAAGTCATGTCATTTCTCAAGTCACTACCTCACCATTTTA
CATTGTTTCTAAACCAAACAAAAGAAAGAGTGACGAAATTGATTCATCAG
ATGAACCATCATCACCATTGACTCAAAAAGTTTGTTCACCACCATCATCA
CCATCTCTTATGGTTTCTCCATCCAACAGTGCCAACAAGATTGAAGATAA
TTCAGTTATTTCAACTGATTTAAATTATATAGATATCACTGATCTATTAA
TTTTACCACAAAAAGAAGCTGCTTCAAAATTGGGTATCTCTGAGTCAATG
TTGTGTAAA----------CAGTCTAGAATATCTTGATTGTAATCTCTCC
TATCCAAGCTTTGCGTAGACGTTGATTCTAATGGAAAGAACAGGTTAATG
GATAATCGATTTTTCTGCTTTCTGCCATATAAGTTTAAGCTCTTCAAAGT
AATAATTATACATATACGTATATACTAGTATAATTACCAATTTTATATTT
TATATTTTTGTGTTTTTTCAATTTTATATTTGTTTTGTTCTCTCACCCTC
ACATTTATTATGTTGGAATTAATTTGGTTTTTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGTTCAAGTATAAAACAATACCAACACACTTTTTATTA
TACTTATATCCACACACAAACTTTTTGTTTTAATTTTTCAATTTAAAAAA
TCAATCAATTTCATCATCATTATTTGTCACATTTTTATTTGAATTCTATT
TGATTATAGATTCGGTTTTTGCTTTGTTTGCTCAATTCCACATCACTATT
ACACACACTCACACACAATGTTATCATTTGTTTCATTAAAATAATTTTAT
TGATCCTTCGCCATTCAACAATTTCCACCAAAAG

Gap gap included
Contig length 1524
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 651412
End point 649889
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 4
Link to clone list U16034
List of clone(s)

est1=SLA628F,1,628
est2=FCL-AA12F,331,959
est3=CHM241Z,960,1074
est4=FCL-AA12Z,985,1524
Translated Amino Acid sequence
sssssdesdedyessyqpslslsqpqppspkqqqqqqqqqqqqqqq*qq*QQQQQQQQQQ
QQQQQQQQQQPKQQQPPSPKQPSSPIQQQYQQQHQQQHQPQQLQQQQQTNQMFIQQQPSD
SIVCNRYIHPAIVVLVDQEVISQTSGYLIVNASLVQHNSKNVNTNNSENQLLQGVKSVLV
EKNGVVIFNKLKPSELAAKLPGQLFSICFTLSDISSVDKQSHVISQVTTSPFYIVSKPNK
RKSDEIDSSDEPSSPLTQKVCSPPSSPSLMVSPSNSANKIEDNSVISTDLNYIDITDLLI
LPQKEAASKLGISESMLCK---

---SLEYLDCNLSYPSFA*tlilmertg*wiidfsafchislsssk**lyiyvytsiitn
fifyifvffqfyicfvlspshllcwn*fgfskkkkkkkkkkfkyktipthfllylyphtn
flf*ffnlknqsissslfvtflfefyliidsvfalfaqfhitiththtqcyhlfh*nnfi
dpspfnnfhqk


Translated Amino Acid sequence (All Frames)
Frame A:
llplhlmnpmrimnhlinhlyhyhnhnhhhqnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnqnnnnhhhqnnhrhqfnnninnninnninhnnynnnnklikclfnnnhq
iqlfvivifiqpllfwltkr*lvkplvi*l*mlhwfntiqrm*tlttaktnyskvlkvfs
lkrmvllfsts*sqvnsppnflvnysafvllflishqlinkvmsflkslphhftlflnqt
kervtklihqmnhhhh*lkkfvhhhhhhllwflhptvptrlkiiqlfqli*ii*isliy*
fyhkkkllqnwvslsqccv---

---qsris*l*sllsklcvdvdsngknrlmdnrffcflpykfklfkviiihiriy*ynyq
fyilyfcvfsilylfcsltltfimleliwffkkkkkkkkkkvqv*nntntlfiilisthk
lfvlifqfkksinfiiiichifi*ilfdyrfgfcfvcsiphhyythshtmlsfvslk*fy
*sfaiqqfppk

Frame B:
fflfi**ir*gl*iilstifiiitttttitktttttttttttttttittitttttttttt
tttttttttttktttttitkttivtnsttistttstttstttitttttn*snvystttir
fncl*slyssshccfg*prgn*snlwlfnckcfigstqfkeckh*qqrkpitprc*kcsr
*kewccyfqqveak*trrqtswsiiqhlfysf*ylis**tkschfsshyltilhcf*tkq
kke*rn*fir*tiitidskslfttiitisygfsiqqcqqd*r*fsyfn*fklyryh*sin
fttkrscfkigyl*vnvv*---

---SLEYLDCNLSYPSFA*tlilmertg*wiidfsafchislsssk**lyiyvytsiitn
fifyifvffqfyicfvlspshllcwn*fgfskkkkkkkkkkfkyktipthfllylyphtn
flf*ffnlknqsissslfvtflfefyliidsvfalfaqfhitiththtqcyhlfh*nnfi
dpspfnnfhqk

Frame C:
sssssdesdedyessyqpslslsqpqppspkqqqqqqqqqqqqqqq*qq*QQQQQQQQQQ
QQQQQQQQQQPKQQQPPSPKQPSSPIQQQYQQQHQQQHQPQQLQQQQQTNQMFIQQQPSD
SIVCNRYIHPAIVVLVDQEVISQTSGYLIVNASLVQHNSKNVNTNNSENQLLQGVKSVLV
EKNGVVIFNKLKPSELAAKLPGQLFSICFTLSDISSVDKQSHVISQVTTSPFYIVSKPNK
RKSDEIDSSDEPSSPLTQKVCSPPSSPSLMVSPSNSANKIEDNSVISTDLNYIDITDLLI
LPQKEAASKLGISESMLCK---

---v*nilivispiqalrrr*f*wkeqvng*sifllsai*v*alqsnnytytyilv*lpi
lyfiflcffnfifvlfshphiyyvginlvfqkkkkkkkkksssikqyqhtfyytyihtqt
fcfnfsi*kinqfhhhylshfylnsi*l*irfllcllnstsllhtlthnviicfikiill
ilrhstistk

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16034-1 (Contig-U16034-1Q)
/CSM_Contig/Contig-U16034-1Q.Seq.d
(1534 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Conti... 1499 0.0
Contig-U12916-1 (Contig-U12916-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U15744-1 (Contig-U15744-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U01386-1 (Contig-U01386-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U14874-1 (Contig-U14874-1Q) /CSM_Contig/Conti... 40 0.010
Contig-U15516-1 (Contig-U15516-1Q) /CSM_Contig/Conti... 38 0.039
Contig-U14093-1 (Contig-U14093-1Q) /CSM_Contig/Conti... 38 0.039
Contig-U13032-1 (Contig-U13032-1Q) /CSM_Contig/Conti... 38 0.039
Contig-U11525-1 (Contig-U11525-1Q) /CSM_Contig/Conti... 38 0.039
Contig-U10874-1 (Contig-U10874-1Q) /CSM_Contig/Conti... 38 0.039

>Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Contig-U16034-1Q.Seq.d
Length = 1534

Score = 1499 bits (756), Expect = 0.0
Identities = 786/786 (100%)
Strand = Plus / Plus


Query: 353 accatcagattcaattgtttgtaatcgttatattcatccagccattgttgttttggttga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 accatcagattcaattgtttgtaatcgttatattcatccagccattgttgttttggttga 412


Query: 413 ccaagaggtaattagtcaaacctctggttatttaattgtaaatgcttcattggttcaaca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccaagaggtaattagtcaaacctctggttatttaattgtaaatgcttcattggttcaaca 472


Query: 473 caattcaaagaatgtaaacactaacaacagcgaaaaccaattactccaaggtgttaaaag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 caattcaaagaatgtaaacactaacaacagcgaaaaccaattactccaaggtgttaaaag 532


Query: 533 tgttctcgttgaaaagaatggtgttgttattttcaacaagttgaagccaagtgaactcgc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgttctcgttgaaaagaatggtgttgttattttcaacaagttgaagccaagtgaactcgc 592


Query: 593 cgccaaacttcctggtcaattattcagcatttgttttactctttctgatatctcatcagt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cgccaaacttcctggtcaattattcagcatttgttttactctttctgatatctcatcagt 652


Query: 653 tgataaacaaagtcatgtcatttctcaagtcactacctcaccattttacattgtttctaa 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tgataaacaaagtcatgtcatttctcaagtcactacctcaccattttacattgtttctaa 712


Query: 713 accaaacaaaagaaagagtgacgaaattgattcatcagatgaaccatcatcaccattgac 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 accaaacaaaagaaagagtgacgaaattgattcatcagatgaaccatcatcaccattgac 772


Query: 773 tcaaaaagtttgttcaccaccatcatcaccatctcttatggtttctccatccaacagtgc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tcaaaaagtttgttcaccaccatcatcaccatctcttatggtttctccatccaacagtgc 832


Query: 833 caacaagattgaagataattcagttatttcaactgatttaaattatatagatatcactga 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 caacaagattgaagataattcagttatttcaactgatttaaattatatagatatcactga 892


Query: 893 tctattaattttaccacaaaaagaagctgcttcaaaattgggtatctctgagtcaatgtt 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 tctattaattttaccacaaaaagaagctgcttcaaaattgggtatctctgagtcaatgtt 952


Query: 953 gtgtaaannnnnnnnnncagtctagaatatcttgattgtaatctctcctatccaagcttt 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 gtgtaaannnnnnnnnncagtctagaatatcttgattgtaatctctcctatccaagcttt 1012


Query: 1013 gcgtagacgttgattctaatggaaagaacaggttaatggataatcgatttttctgctttc 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 gcgtagacgttgattctaatggaaagaacaggttaatggataatcgatttttctgctttc 1072


Query: 1073 tgccatataagtttaagctcttcaaagtaataattatacatatacgtatatactagtata 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 tgccatataagtttaagctcttcaaagtaataattatacatatacgtatatactagtata 1132


Query: 1133 attacc 1138
||||||
Sbjct: 1133 attacc 1138


Score = 184 bits (93), Expect = 3e-46
Identities = 93/93 (100%)
Strand = Plus / Plus


Query: 1 cttcttcctcttcatctgatgaatccgatgaggattatgaatcatcttatcaaccatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcttcctcttcatctgatgaatccgatgaggattatgaatcatcttatcaaccatctt 60


Query: 61 tatcattatcacaaccacaaccaccatcaccaa 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 tatcattatcacaaccacaaccaccatcaccaa 93


Score = 133 bits (67), Expect = 9e-31
Identities = 67/67 (100%)
Strand = Plus / Plus


Query: 1468 atgttatcatttgtttcattaaaataattttattgatccttcgccattcaacaatttcca 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1468 atgttatcatttgtttcattaaaataattttattgatccttcgccattcaacaatttcca 1527


Query: 1528 ccaaaag 1534
|||||||
Sbjct: 1528 ccaaaag 1534


Score = 125 bits (63), Expect = 2e-28
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 1264 gttcaagtataaaacaataccaacacactttttattatacttatatccacacacaaactt 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 gttcaagtataaaacaataccaacacactttttattatacttatatccacacacaaactt 1323


Query: 1324 ttt 1326
|||
Sbjct: 1324 ttt 1326


Score = 119 bits (60), Expect = 1e-26
Identities = 60/60 (100%)
Strand = Plus / Plus


Query: 1391 gaattctatttgattatagattcggtttttgctttgtttgctcaattccacatcactatt 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 gaattctatttgattatagattcggtttttgctttgtttgctcaattccacatcactatt 1450


Score = 93.7 bits (47), Expect = 8e-19
Identities = 47/47 (100%)
Strand = Plus / Plus


Query: 1187 gttctctcaccctcacatttattatgttggaattaatttggtttttc 1233
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 gttctctcaccctcacatttattatgttggaattaatttggtttttc 1233


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 71 acaaccacaaccaccatcaccaa 93
||||| |||||||||||||||||
Sbjct: 218 acaacaacaaccaccatcaccaa 240


Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 11 ttcatctgatgaatc 25
|||||||||||||||
Sbjct: 755 ttcatctgatgaatc 741


Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 741 gattcatcagatgaa 755
|||||||||||||||
Sbjct: 25 gattcatcagatgaa 11


Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 397 ttgttgttttggttg 411
|||||||||||||||
Sbjct: 224 ttgttgttttggttg 210


>Contig-U12916-1 (Contig-U12916-1Q) /CSM_Contig/Contig-U12916-1Q.Seq.d
Length = 2025

Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus


Query: 55 catctttatcattatcacaaccacaaccaccatcacca 92
|||||||||||||| ||| ||||| ||||||| |||||
Sbjct: 279 catctttatcattaccaccaccaccaccaccaccacca 242


>Contig-U15744-1 (Contig-U15744-1Q) /CSM_Contig/Contig-U15744-1Q.Seq.d
Length = 3275

Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 785 ttcaccaccatcatcaccatc 805
|||||||||||||||||||||
Sbjct: 2067 ttcaccaccatcatcaccatc 2087


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,423
Number of Sequences: 8402
Number of extensions: 22423
Number of successful extensions: 2973
Number of sequences better than 10.0: 372
length of query: 1534
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1518
effective length of database: 7,941,110
effective search space: 12054604980
effective search space used: 12054604980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 8
Homology vs DNA
Query= Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Contig-U16034-1Q.Seq.d
(1534 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C23806) Dictyostelium discoideum gamete cDNA, clone FCL-AA12. 1191 0.0 1
(AU060230) Dictyostelium discoideum slug cDNA, clone SLA628. 543 e-167 2
(C23805) Dictyostelium discoideum gamete cDNA, clone FCL-AA12. 210 e-154 5
(AU033336) Dictyostelium discoideum slug cDNA, clone SLA628. 133 4e-79 3
(BJ382897) Dictyostelium discoideum cDNA clone:ddc46a12, 3' ... 196 2e-45 1
(AU060310) Dictyostelium discoideum slug cDNA, clone SLJ139. 133 6e-42 2
(BJ368329) Dictyostelium discoideum cDNA clone:ddc46a12, 5' ... 82 7e-11 1
(FP085554) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.003 2
(AC094954) Rattus norvegicus clone CH230-6H19, *** SEQUENCIN... 44 0.011 2
(AC136285) Homo sapiens chromosome 16 clone RP11-899L11, com... 40 0.011 2
(AC011811) Homo sapiens clone b250a12, complete sequence. 40 0.011 2
(AC192570) Pan troglodytes BAC clone CH251-573F15 from chrom... 40 0.011 2
(AC125948) Rattus norvegicus clone CH230-275A12, WORKING DRA... 40 0.011 2
(CU627979) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.011 2
(CU407001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.011 2
(AC104634) Homo sapiens BAC clone RP11-793L24 from 2, comple... 40 0.011 2
(AC129862) Rattus norvegicus clone CH230-97O6, *** SEQUENCIN... 42 0.039 2
(AC120822) Rattus norvegicus clone CH230-48F21, *** SEQUENCI... 42 0.039 2
(AC127782) Rattus norvegicus clone CH230-140P19, *** SEQUENC... 40 0.039 2
(AC096699) Rattus norvegicus clone CH230-167J5, WORKING DRAF... 42 0.039 2
(CR925829) C.jacchus DNA sequence from clone CH259-147B13. 40 0.040 2
(AC079460) Homo sapiens 12 BAC RP11-297L6 (Roswell Park Canc... 38 0.040 2
(AC013623) Mus musculus clone RP23-65I8, *** SEQUENCING IN P... 40 0.14 2
(AC021632) Mus musculus chromosome 11 clone MGS1-213E3 map 1... 40 0.14 2
(AC115386) Rattus norvegicus clone CH230-183O23, *** SEQUENC... 40 0.14 2
(AC115960) Mus musculus clone RP24-65L12, WORKING DRAFT SEQU... 40 0.14 2
(AC113743) Rattus norvegicus clone CH230-108K21, WORKING DRA... 40 0.14 2
(AC109547) Rattus norvegicus clone CH230-217N7, *** SEQUENCI... 40 0.14 2
(AC106911) Rattus norvegicus clone CH230-31H20, *** SEQUENCI... 40 0.14 2
(AC114039) Rattus norvegicus clone CH230-186D12, *** SEQUENC... 40 0.14 2
(AC135283) Rattus norvegicus clone CH230-32H17, WORKING DRAF... 40 0.14 2
(AC130845) Rattus norvegicus clone CH230-5A11, *** SEQUENCIN... 40 0.14 2
(AC129344) Rattus norvegicus clone CH230-114O21, *** SEQUENC... 40 0.14 2
(AC126154) Rattus norvegicus clone CH230-85N18, WORKING DRAF... 40 0.14 2
(AC103455) Rattus norvegicus clone CH230-200F2, WORKING DRAF... 40 0.14 2
(AC097681) Rattus norvegicus clone CH230-101G18, WORKING DRA... 40 0.14 2
(AC087335) Mus musculus chromosome 11 clone MGS1-213E3 map 1... 40 0.14 2
(AC098981) Rattus norvegicus clone CH230-112J19, *** SEQUENC... 40 0.14 2
(AC111685) Rattus norvegicus clone CH230-54J16, WORKING DRAF... 40 0.14 2
(AC099470) Rattus norvegicus clone CH230-221D3, WORKING DRAF... 40 0.14 2
(AC165458) Bos taurus clone CH240-95M24, *** SEQUENCING IN P... 40 0.14 2
(AC130952) Rattus norvegicus clone CH230-38O6, *** SEQUENCIN... 40 0.14 2
(AF389853) Mus musculus strain C57BL/6J chromosome 4 clone R... 40 0.14 2
(AC106328) Rattus norvegicus clone CH230-229P13, WORKING DRA... 40 0.14 2
(AC097200) Rattus norvegicus clone CH230-138M10, WORKING DRA... 40 0.14 2
(AC094064) Rattus norvegicus clone CH230-93K5, WORKING DRAFT... 40 0.14 2
(AC106469) Rattus norvegicus clone CH230-212N10, WORKING DRA... 40 0.14 2
(AC094409) Rattus norvegicus clone CH230-3M23, WORKING DRAFT... 40 0.14 2
(AC135455) Rattus norvegicus clone CH230-4B13, WORKING DRAFT... 40 0.14 2
(AC112107) Rattus norvegicus clone CH230-81N13, WORKING DRAF... 40 0.14 2
(AC129341) Rattus norvegicus clone CH230-238J22, WORKING DRA... 40 0.14 2
(AC114539) Mus musculus chromosome 19, clone RP23-62I23, com... 40 0.14 2
(AC096354) Rattus norvegicus clone CH230-34F9, WORKING DRAFT... 40 0.14 2
(AC095186) Rattus norvegicus clone CH230-9B21, WORKING DRAFT... 40 0.14 2
(AC116060) Rattus norvegicus clone CH230-223K14, *** SEQUENC... 40 0.14 2
(AC120819) Rattus norvegicus clone CH230-74L16, *** SEQUENCI... 40 0.14 2
(AC097543) Rattus norvegicus clone CH230-126I1, WORKING DRAF... 40 0.14 2
(AC130772) Rattus norvegicus clone CH230-202M3, *** SEQUENCI... 40 0.14 2
(AC126065) Rattus norvegicus clone CH230-41O21, *** SEQUENCI... 40 0.14 2
(AC129281) Rattus norvegicus clone CH230-6P16, *** SEQUENCIN... 40 0.14 2
(AC095409) Rattus norvegicus clone CH230-6P3, *** SEQUENCING... 40 0.14 2
(AC097133) Rattus norvegicus clone CH230-60M20, *** SEQUENCI... 40 0.14 2
(AC095431) Rattus norvegicus clone CH230-7J16, *** SEQUENCIN... 40 0.14 2
(AC132557) Rattus norvegicus clone CH230-163F14, WORKING DRA... 40 0.14 2
(AC123144) Rattus norvegicus clone CH230-247A12, WORKING DRA... 40 0.14 2
(AC133402) Rattus norvegicus clone CH230-74O13, *** SEQUENCI... 40 0.14 2
(AC097683) Rattus norvegicus clone CH230-81E12, WORKING DRAF... 40 0.14 2
(AC145827) Pan troglodytes clone rp43-51h23, complete sequence. 40 0.14 2
(AC110968) Rattus norvegicus clone CH230-75G17, *** SEQUENCI... 40 0.14 2
(AC095758) Rattus norvegicus clone CH230-2P6, WORKING DRAFT ... 40 0.14 2
(AC124949) Rattus norvegicus clone CH230-6E24, WORKING DRAFT... 40 0.14 2
(CU469018) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.14 2
(AC095606) Rattus norvegicus clone CH230-8N20, WORKING DRAFT... 40 0.14 2
(AC147377) Mus musculus BAC clone RP23-156K23 from chromosom... 40 0.14 2
(AC172808) Bos taurus clone CH240-49B10, WORKING DRAFT SEQUE... 40 0.14 2
(AC094561) Rattus norvegicus clone CH230-4K2, *** SEQUENCING... 40 0.14 2
(AC133354) Rattus norvegicus clone CH230-154E19, WORKING DRA... 40 0.14 2
(AC129682) Rattus norvegicus clone CH230-207C13, *** SEQUENC... 40 0.14 2
(AC103264) Rattus norvegicus clone CH230-170M2, WORKING DRAF... 38 0.15 2
(AC111391) Rattus norvegicus clone CH230-145D10, WORKING DRA... 40 0.15 2
(AC132689) Rattus norvegicus clone CH230-22J1, WORKING DRAFT... 40 0.15 2
(AC119470) Rattus norvegicus clone CH230-361I3, WORKING DRAF... 40 0.15 2
(AC116067) Rattus norvegicus clone CH230-181M8, WORKING DRAF... 40 0.15 2
(AC112634) Rattus norvegicus clone CH230-122C23, WORKING DRA... 40 0.15 2
(AC106457) Rattus norvegicus clone CH230-106H6, *** SEQUENCI... 40 0.15 2
(AC098184) Rattus norvegicus clone CH230-182F19, WORKING DRA... 38 0.15 2
(AC096931) Rattus norvegicus clone CH230-96E21, WORKING DRAF... 40 0.15 2
(AC095504) Rattus norvegicus 2 BAC CH230-7P18 (Children's Ho... 40 0.15 2
(AC122652) Rattus norvegicus clone CH230-216L13, WORKING DRA... 40 0.15 2
(AC117299) Rattus norvegicus clone CH230-150B14, *** SEQUENC... 40 0.15 2
(AC094946) Rattus norvegicus BAC CH230-6C14 () complete seq... 40 0.15 2
(AC139935) Mus musculus chromosome 16, clone RP23-383M10, co... 40 0.15 2
(AC137256) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 40 0.15 2
(AC112527) Rattus norvegicus clone CH230-224A24, *** SEQUENC... 40 0.15 2
(AC134653) Rattus norvegicus clone CH230-83K13, WORKING DRAF... 40 0.15 2
(AL606969) Mouse DNA sequence from clone RP23-331P21 on chro... 40 0.15 2
(AC129342) Rattus norvegicus BAC CH230-229B21 (Children's H... 40 0.15 2
(AC137455) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 40 0.15 2
(AC133260) Rattus norvegicus clone CH230-319B8, WORKING DRAF... 40 0.15 2
(AC111764) Rattus norvegicus clone CH230-9P22, *** SEQUENCIN... 40 0.15 2
(AC173783) Bos taurus clone CH240-1G11, WORKING DRAFT SEQUEN... 40 0.15 2
(AC128900) Rattus norvegicus clone CH230-295G4, *** SEQUENCI... 40 0.15 2
(AC156395) Mus musculus clone RP24-66H4, WORKING DRAFT SEQUE... 40 0.15 2
(AC114218) Rattus norvegicus clone CH230-318G24, WORKING DRA... 40 0.15 2
(AC163201) Bos taurus clone CH240-135M6, WORKING DRAFT SEQUE... 40 0.15 2
(AC156982) Mus musculus chromosome 19, clone RP23-183N3, com... 40 0.15 2
(AC230309) Bos taurus clone CH240-513L22, WORKING DRAFT SEQU... 40 0.15 2
(AC130590) Rattus norvegicus clone CH230-421G19, *** SEQUENC... 40 0.15 2
(AC128455) Rattus norvegicus clone CH230-86M16, *** SEQUENCI... 40 0.15 2
(AC109322) Homo sapiens chromosome 8, clone CTD-3065J16, com... 40 0.15 2
(AC155129) Bos taurus clone CH240-43B22, WORKING DRAFT SEQUE... 40 0.15 2
(AC114589) Mus musculus chromosome 8, clone RP23-365O13, com... 40 0.15 2
(AC199581) Rhesus Macaque BAC CH250-161K8 () complete seque... 40 0.15 2
(AC160938) Pan troglodytes BAC clone CH251-901A9 from chromo... 40 0.15 2
(AC197386) Pongo abelii chromosome UNKNOWN clone CH276-5G2, ... 40 0.15 2
(AC019043) Homo sapiens BAC clone RP11-11B21 from 7, complet... 40 0.15 2
(AC222807) Bos taurus clone CH240-437P15, WORKING DRAFT SEQU... 40 0.15 2
(AC035139) Homo sapiens chromosome 10 clone RP11-563N6, comp... 40 0.15 2
(CT998541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.15 2
(AC097990) Rattus norvegicus clone CH230-142C21, WORKING DRA... 40 0.15 2
(AC010536) Homo sapiens chromosome 16 clone RP11-278A23, com... 40 0.15 2
(AC134030) Rattus norvegicus clone CH230-192O5, WORKING DRAF... 40 0.15 2
(AC166792) Mus musculus chromosome 1 clone RP23-340D1 map 1,... 40 0.15 2
(CU855528) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.15 2
(AC134141) Rattus norvegicus clone CH230-374G4, WORKING DRAF... 40 0.15 2
(AC007240) Homo sapiens BAC clone RP11-83M8 from 2, complete... 40 0.15 2
(AC105479) Rattus norvegicus clone CH230-210P19, WORKING DRA... 40 0.15 2
(AC221426) Bos taurus clone CH240-406O10, WORKING DRAFT SEQU... 40 0.15 2
(AC129627) Rattus norvegicus clone CH230-421M15, WORKING DRA... 40 0.15 2
(AC188220) Callithrix jacchus clone CH259-80M8, WORKING DRAF... 40 0.15 2
(AC180108) Strongylocentrotus purpuratus clone R3-4007F24, W... 40 0.15 2
(AC161006) Pan troglodytes BAC clone CH251-842O13 from chrom... 40 0.15 2
(AC120004) Mus musculus chromosome 5, clone RP24-150N15, com... 40 0.15 2
(AC178597) Strongylocentrotus purpuratus clone R3-3021P24, W... 40 0.15 2
(CU469238) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.15 2
(AL669814) Mouse DNA sequence from clone RP23-431J18 on chro... 40 0.15 2
(AC124585) Mus musculus BAC clone RP23-130P17 from chromosom... 40 0.15 2
(AC122466) Mus musculus BAC clone RP24-304N8 from chromosome... 40 0.15 2
(AC179380) Strongylocentrotus purpuratus clone R3-59O6, WORK... 40 0.15 2
(AC188994) Callithrix jacchus chromosome UNK clone CH259-68H... 40 0.15 2
(AC117241) Mus musculus BAC clone RP24-147H15 from chromosom... 40 0.15 2
(DD467325) Genes associated with HCV-positive hepatocellular... 40 0.15 2
(CS351476) Sequence 860 from Patent WO2006013561. 40 0.15 2
(Z97353) Human DNA sequence from clone RP1-90L6 on chromosom... 40 0.15 2
(AC146715) Homo sapiens chromosome 17 clone RP11-852O24 map ... 40 0.15 2
(AC092327) Homo sapiens chromosome 16 clone RP11-158I3, comp... 40 0.15 2
(AC122238) Mus musculus BAC clone RP23-143D4 from chromosome... 40 0.15 2
(AC148610) Mus musculus chromosome 17, clone RP24-260D18, co... 40 0.15 2
(FB357235) Sequence 94 from Patent WO2006119775. 40 0.15 2
(AC127266) Mus musculus BAC clone RP24-347B12 from chromosom... 40 0.15 2
(AC193732) Callicebus moloch clone LB5-252H4, WORKING DRAFT ... 40 0.15 2
(AL607151) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 40 0.15 2
(AC158539) Pan troglodytes BAC clone CH251-510O3 from chromo... 40 0.15 2
(AC190317) Rhesus Macaque BAC CH250-340A9 () complete seque... 40 0.15 2
(AC137107) Mus musculus chromosome 5, clone RP23-274I21, com... 40 0.15 2
(AC172425) Bos taurus clone CH240-524O10, WORKING DRAFT SEQU... 40 0.15 2
(AC172627) Bos taurus clone CH240-30O14, WORKING DRAFT SEQUE... 40 0.15 2
(AC153580) Mus musculus 6 BAC RP23-389F23 (Roswell Park Canc... 40 0.15 2
(AC157056) Bos taurus clone CH240-68F6, WORKING DRAFT SEQUEN... 40 0.15 2
(AC128836) Rattus norvegicus clone CH230-485K2, WORKING DRAF... 40 0.15 2
(AC133677) Rattus norvegicus clone CH230-273H13, *** SEQUENC... 40 0.15 2
(AC023112) Homo sapiens chromosome 5 clone RP11-215G15, WORK... 40 0.15 2
(AC124632) Mus musculus chromosome 19, clone RP23-445I14, co... 38 0.15 2
(AC174568) Bos taurus clone CH240-311J24, WORKING DRAFT SEQU... 40 0.15 2
(AL390791) Human DNA sequence from clone RP11-204A14 on chro... 40 0.15 2
(AC197175) Macaca mulatta clone CH250-523B21, WORKING DRAFT ... 40 0.15 2
(AC147120) Pan troglodytes BAC clone CH251-531L7 from Y, com... 40 0.15 2
(AC192509) Cavia porcellus clone CH234-458E4, WORKING DRAFT ... 40 0.15 2
(AC022533) Homo sapiens chromosome 10 clone RP11-230D19, com... 40 0.15 2
(AC151976) Mus musculus BAC clone RP24-446O20 from 10, compl... 40 0.15 2
(AC174679) Mus musculus BAC clone CH36-470B20 from chromosom... 40 0.15 2
(AC128360) Rattus norvegicus clone CH230-424B10, WORKING DRA... 40 0.15 2
(AC179009) Strongylocentrotus purpuratus clone R3-32G21, WOR... 40 0.15 2
(AC123431) Rattus norvegicus clone CH230-425C2, *** SEQUENCI... 40 0.15 2
(AC184246) Strongylocentrotus purpuratus clone R3-54K10, WOR... 40 0.15 2
(AC012629) Homo sapiens chromosome 5 clone CTD-2154B17, comp... 40 0.15 2
(U95738) Human chromosome 16p13.11 BAC clone CIT987SK-29B12 ... 40 0.15 2
(AC026743) Homo sapiens chromosome 5 clone RP11-121L11, comp... 40 0.15 2
(AC201854) Macaca mulatta chromosome 14 clone CH250-337D6, W... 40 0.15 2
(AC137640) Homo sapiens chromosome 16 clone RP11-22G8, WORKI... 40 0.15 2
(AC024332) Homo sapiens clone RP11-271J4, WORKING DRAFT SEQU... 40 0.15 2
(AC092720) Homo sapiens chromosome 16 clone RP11-482M8, comp... 40 0.15 2
(CU972386) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.15 2
(AC093622) Homo sapiens chromosome 4 clone CTD-2175B10, WORK... 40 0.15 2
(AC215830) Rattus norvegicus clone CH230-252M4, WORKING DRAF... 40 0.15 2
(AC142132) Rattus norvegicus clone CH230-303E9, *** SEQUENCI... 40 0.15 2
(AL392083) Human DNA sequence from clone RP11-29A19 on chrom... 40 0.15 2
(AC194769) Macaca mulatta clone CH250-205L19, WORKING DRAFT ... 40 0.15 2
(AL954248) Pan troglodytes chromosome 22 clone PTB-061A04 ma... 40 0.15 2
(AC117979) Rattus norvegicus clone CH230-240J3, WORKING DRAF... 40 0.15 2
(AC140353) Mus musculus BAC clone RP24-67E1 from chromosome ... 40 0.15 2
(AC130039) Rattus norvegicus clone CH230-340L18, *** SEQUENC... 40 0.15 2
(AC025484) Homo sapiens clone RP11-252P19, WORKING DRAFT SEQ... 40 0.15 2
(AC080126) Homo sapiens chromosome 12 clone RP11-313F23, WOR... 40 0.15 2
(AC126897) Rattus norvegicus clone CH230-388K23, WORKING DRA... 40 0.15 2
(AC184409) Strongylocentrotus purpuratus clone R3-3097C9, WO... 40 0.15 2
(AL954850) Mouse DNA sequence from clone RP23-331B22 on chro... 40 0.15 2
(Z97192) Human DNA sequence from clone RP1-29C18 on chromoso... 40 0.15 2
(AL627204) Mouse DNA sequence from clone RP23-118E21 on chro... 40 0.15 2
(AC133065) Homo sapiens chromosome 16 clone RP11-876N24, com... 40 0.15 2
(AC099636) Mus musculus chromosome 19, clone RP24-149H13, co... 38 0.15 2
(AC185877) Bos taurus clone RP42-145J19, WORKING DRAFT SEQUE... 36 0.15 2
(AC177421) Strongylocentrotus purpuratus clone R3-54J21, WOR... 40 0.15 2
(AC140847) Homo sapiens 12 BAC RP11-313F23 (Roswell Park Can... 40 0.15 2
(AL021921) Human DNA sequence from clone RP3-357I16 on chrom... 40 0.15 2
(AC176037) Strongylocentrotus purpuratus clone R3-18I8, WORK... 40 0.15 2
(AC178119) Strongylocentrotus purpuratus clone R3-3074J13, W... 40 0.15 2
(AC107020) Homo sapiens 12 BAC RP11-271J4 (Roswell Park Canc... 40 0.15 2
(AF429315) Homo sapiens junctophilin 3 (JPH3) gene, partial ... 40 0.15 2
(AC073578) Homo sapiens 12 BAC RP11-897M7 (Roswell Park Canc... 40 0.15 2
(AC178916) Strongylocentrotus purpuratus clone R3-3115E19, W... 40 0.15 2
(AC179767) Strongylocentrotus purpuratus clone R3-1016H24, W... 40 0.15 2
(AF067845) Homo sapiens clone P1-4248, complete sequence. 40 0.15 2
(AL365401) Human DNA sequence from clone RP11-489M19 on chro... 40 0.15 2
(CU633501) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.15 2
(AC137896) Homo sapiens chromosome 17, clone RP11-765O14, co... 40 0.15 2
(AC168646) Strongylocentrotus purpuratus clone R3-3017L4, WO... 40 0.15 2
(BX842667) Mouse DNA sequence from clone RP24-319D9 on chrom... 40 0.15 2
(AC139149) Homo sapiens chromosome 17, clone RP13-766D20, co... 40 0.15 2
(AL391535) Human DNA sequence from clone RP11-320C15 on chro... 40 0.15 2
(AC100470) Mus musculus clone RP23-139J18, LOW-PASS SEQUENCE... 40 0.16 2
(AC120009) Mus musculus clone RP24-195D12, LOW-PASS SEQUENCE... 40 0.16 2
(BX119919) Human DNA sequence from clone RP11-987D21 on chro... 40 0.16 2
(AC141203) Rattus norvegicus clone CH230-389K15, WORKING DRA... 40 0.16 2
(Z95394) Human DNA sequence *** SEQUENCING CANCELLED *** fro... 40 0.16 2
(AP005379) Homo sapiens genomic DNA, chromosome 11 clone:CMF... 40 0.16 2
(AC221036) Homo sapiens chromosome UNKNOWN clone ABC12-79197... 40 0.16 2
(AC105344) Homo sapiens BAC clone RP11-585B9 from 2, complet... 40 0.16 2
(AC207299) Homo sapiens chromosome 17 clone ABC9-45392900D8,... 40 0.16 2
(BX537318) Human DNA sequence from clone CITF22-92A6 on chro... 40 0.16 2
(AL954745) Human DNA sequence from clone CITF22-65C6 on chro... 40 0.16 2
(BW683767) Glycine max cDNA clone: GMFL01-51-E24, 5'end. 38 0.17 3
(AK246084) Glycine max cDNA, clone: GMFL01-51-E24. 38 0.18 2
(BG535503) 602563188F1 NIH_MGC_77 Homo sapiens cDNA clone IM... 40 0.19 2
(EY328329) CAWY1499.fwd CAWY Helobdella robusta Subtracted E... 40 0.19 2
(AJ955734) Sus scrofa EST, clone C0007736b17, 5' direction. 40 0.19 2
(AJ955101) Sus scrofa EST, clone C0007736b17, 3' direction. 40 0.19 2
(EI724921) 2B421021J02TF BAC library from breast tumor sampl... 40 0.19 2
(EY299917) CAWX14733.fwd CAWX Helobdella robusta Primary Ear... 40 0.19 2
(FE139367) LV_HP_RA34N22f Litopenaeus vannamei hepatopancrea... 40 0.19 2
(AL179603) Tetraodon nigroviridis genome survey sequence PUC... 40 0.19 2
(CE438326) tigr-gss-dog-17000335895076 Dog Library Canis lup... 40 0.19 2
(G67741) D4Mon22 RPCI-23 mouse BAC clone 118E21 Mus musculus... 40 0.19 2
(CO544386) LyEST12150 Sea lamprey LyEST Petromyzon marinus c... 40 0.19 2
(DH627675) Rattus norvegicus DNA, BAC clone: RNB1-162M01, 3'... 40 0.19 2
(BF566802) UI-R-BJ0p-afm-d-10-0-UI.r1 UI-R-BJ0p Rattus norve... 40 0.19 2
(DB969352) Glycine max cDNA, clone: GMFL02-40-A05, 5'end. 38 0.19 2
(EF889386) Mus musculus C57BL/6N IST11829F8HMF1 gene trap em... 40 0.19 2
(S65019) mucin [rats, Sprague-Dawley, sulfur-dioxide-treated... 40 0.19 2
(EA117033) Sequence 1217 from patent US 7205146. 40 0.19 2
(CE643839) tigr-gss-dog-17000366888368 Dog Library Canis lup... 40 0.19 2
(CU058984) Equus caballus GSS, BAC clone CH241-163B2, SP6 en... 40 0.20 2
(BF810903) CM2-CI0180-181100-531-g04 CI0180 Homo sapiens cDN... 40 0.20 2
(CE252195) tigr-gss-dog-17000335923930 Dog Library Canis lup... 42 0.20 3
(AM429446) Vitis vinifera contig VV78X228338.3, whole genome... 50 0.25 1
(BM648461) 17000687326059 A.Gam.ad.cDNA1 Anopheles gambiae c... 50 0.25 1
(BM607983) 17000687085850 A.Gam.ad.cDNA.blood1 Anopheles gam... 50 0.25 1
(AC091352) Rattus norvegicus clone CH230-1B19, *** SEQUENCIN... 38 0.52 2
(AC115161) Rattus norvegicus clone CH230-237I7, *** SEQUENCI... 38 0.52 2
(AC111410) Rattus norvegicus clone CH230-205L15, WORKING DRA... 38 0.52 2
(AC126288) Rattus norvegicus clone CH230-52K7, WORKING DRAFT... 38 0.53 2
(AC133723) Rattus norvegicus clone CH230-107H7, *** SEQUENCI... 38 0.53 2
(AC128556) Rattus norvegicus clone CH230-135E13, *** SEQUENC... 38 0.53 2
(AC122955) Rattus norvegicus clone CH230-66H17, *** SEQUENCI... 38 0.53 2
(AC119508) Rattus norvegicus clone CH230-38I4, *** SEQUENCIN... 38 0.53 2
(AC098517) Rattus norvegicus clone CH230-68A4, *** SEQUENCIN... 38 0.53 2
(AC113707) Rattus norvegicus clone CH230-102K5, *** SEQUENCI... 38 0.53 2
(AC098948) Rattus norvegicus clone CH230-62I4, *** SEQUENCIN... 38 0.53 2
(AC095343) Rattus norvegicus clone CH230-21M18, WORKING DRAF... 38 0.53 2
(AC110314) Rattus norvegicus clone CH230-198I24, WORKING DRA... 38 0.53 2
(AC096272) Rattus norvegicus clone CH230-42H17, *** SEQUENCI... 38 0.53 2
(AC103490) Rattus norvegicus clone CH230-15J23, WORKING DRAF... 38 0.53 2
(AC134361) Rattus norvegicus clone CH230-6H10, WORKING DRAFT... 38 0.53 2
(AC123321) Rattus norvegicus clone CH230-214J13, *** SEQUENC... 38 0.53 2
(AC106312) Rattus norvegicus clone CH230-124E11, WORKING DRA... 38 0.53 2
(AC109758) Rattus norvegicus clone CH230-229K21, WORKING DRA... 38 0.53 2
(AC128345) Rattus norvegicus clone CH230-103N20, *** SEQUENC... 38 0.53 2
(AC095618) Rattus norvegicus clone CH230-8G4, WORKING DRAFT ... 38 0.53 2
(AC097815) Rattus norvegicus clone CH230-35G4, WORKING DRAFT... 38 0.53 2
(AC127063) Rattus norvegicus clone CH230-9K4, *** SEQUENCING... 38 0.53 2
(AC123307) Rattus norvegicus clone CH230-41J1, WORKING DRAFT... 38 0.53 2
(AC135947) Rattus norvegicus clone CH230-162G21, WORKING DRA... 38 0.53 2
(AC110651) Rattus norvegicus clone CH230-81I7, WORKING DRAFT... 38 0.53 2
(AC120684) Rattus norvegicus clone CH230-13M5, *** SEQUENCIN... 38 0.53 2
(AC093983) Rattus norvegicus clone CH230-39I4, *** SEQUENCIN... 38 0.53 2
(AC095787) Rattus norvegicus 14 BAC CH230-9M3 (Children's Ho... 38 0.53 2
(AC131881) Rattus norvegicus clone CH230-2F23, *** SEQUENCIN... 38 0.53 2
(AC128804) Rattus norvegicus clone CH230-144F16, *** SEQUENC... 38 0.53 2
(AC095591) Rattus norvegicus clone CH230-8I20, WORKING DRAFT... 38 0.53 2
(AC099087) Rattus norvegicus clone CH230-26N10, *** SEQUENCI... 38 0.53 2
(AC115520) Rattus norvegicus clone CH230-204A14, WORKING DRA... 38 0.53 2
(AC123153) Rattus norvegicus clone CH230-246C7, *** SEQUENCI... 38 0.53 2
(AC097248) Rattus norvegicus clone CH230-177C11, *** SEQUENC... 38 0.53 2
(AC126519) Rattus norvegicus clone CH230-159N5, WORKING DRAF... 38 0.53 2
(AC112739) Rattus norvegicus 7 BAC CH230-108A12 (Children's ... 38 0.53 2
(AC119294) Rattus norvegicus clone CH230-181N4, *** SEQUENCI... 38 0.53 2
(AC119364) Rattus norvegicus clone CH230-179F6, WORKING DRAF... 38 0.53 2
(AC109128) Homo sapiens chromosome 3 clone RP11-423B7, WORKI... 38 0.53 2
(AC098636) Rattus norvegicus clone CH230-148F22, WORKING DRA... 38 0.53 2
(AC097693) Rattus norvegicus clone CH230-80N14, *** SEQUENCI... 38 0.53 2
(AC153015) Mus musculus BAC clone RP23-200I3 from chromosome... 38 0.53 2
(AC094313) Rattus norvegicus clone CH230-3G9, *** SEQUENCING... 38 0.53 2
(AC095273) Rattus norvegicus clone CH230-11J14, WORKING DRAF... 38 0.53 2
(AC111512) Rattus norvegicus clone CH230-134N11, *** SEQUENC... 38 0.53 2
(AC103262) Rattus norvegicus clone CH230-169L19, WORKING DRA... 38 0.53 2
(AC131460) Rattus norvegicus clone CH230-462K2, WORKING DRAF... 38 0.53 2
(AC114469) Rattus norvegicus clone CH230-59O3, WORKING DRAFT... 38 0.53 2
(AC119491) Rattus norvegicus clone CH230-498C19, WORKING DRA... 38 0.53 2
(AC169616) Bos taurus clone CH240-200A13, WORKING DRAFT SEQU... 38 0.53 2
(AC097081) Rattus norvegicus clone CH230-49G13, WORKING DRAF... 38 0.53 2
(AC130743) Rattus norvegicus clone CH230-159N18, WORKING DRA... 38 0.53 2
(AC135374) Rattus norvegicus clone CH230-198J8, WORKING DRAF... 38 0.53 2
(AC118546) Mus musculus strain C57BL/6J clone rp23-346h22 ma... 38 0.53 2
(AC109744) Rattus norvegicus clone CH230-54J7, *** SEQUENCIN... 38 0.53 2
(AC103555) Rattus norvegicus clone CH230-141I14, WORKING DRA... 38 0.53 2
(AC135681) Rattus norvegicus clone CH230-268F23, *** SEQUENC... 38 0.53 2
(AC141143) Rattus norvegicus clone CH230-143C14, WORKING DRA... 38 0.53 2
(AC128592) Rattus norvegicus clone CH230-212D10, *** SEQUENC... 38 0.53 2
(AC106483) Rattus norvegicus clone CH230-171C4, *** SEQUENCI... 38 0.53 2
(AC135470) Rattus norvegicus clone CH230-1M19, *** SEQUENCIN... 38 0.53 2
(AC182987) Bos taurus clone CH240-68N7, WORKING DRAFT SEQUEN... 38 0.53 2
(AC128417) Rattus norvegicus clone CH230-91A21, WORKING DRAF... 38 0.53 2
(AC097047) Rattus norvegicus clone CH230-175H22, *** SEQUENC... 38 0.53 2
(CU457639) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.53 2
(AC134812) Rattus norvegicus clone CH230-322O5, WORKING DRAF... 38 0.53 2
(AC135516) Rattus norvegicus clone CH230-363J4, *** SEQUENCI... 38 0.53 2
(AC162393) Bos taurus clone CH240-122H5, WORKING DRAFT SEQUE... 38 0.54 2
(AC166110) Mus musculus BAC clone RP23-130A4 from chromosome... 38 0.54 2
(AC114614) Mus musculus chromosome 5, clone RP24-81J14, comp... 38 0.54 2
(AC151294) Mus musculus BAC clone RP23-137I7 from chromosome... 38 0.54 2
(AC196038) Mus musculus chromosome 17 clone RP24-224L18, WOR... 38 0.54 2
(AC112775) Homo sapiens chromosome 3 clone RP11-436M6, *** S... 38 0.54 2
(AC214112) Pongo abelii chromosome UNKNOWN clone CH276-95N4,... 38 0.54 2
(AC166102) Mus musculus BAC clone RP23-397O23 from chromosom... 38 0.54 2
(AC201515) Strongylocentrotus purpuratus clone R3-3085L22, W... 38 0.54 2
(AC012325) Homo sapiens chromosome 16 clone RP11-93H5, compl... 38 0.54 2
(AL590128) Human DNA sequence from clone RP11-312B8 on chrom... 38 0.54 2
(AC136859) Rattus norvegicus clone CH230-482E23, WORKING DRA... 38 0.54 2
(AC112265) Mus musculus BAC clone RP23-421N20 from 10, compl... 38 0.54 2
(AC144996) Rattus norvegicus strain Brown Norway clone CH230... 38 0.54 2
(AC166360) Mus musculus BAC clone RP24-497L5 from chromosome... 38 0.54 2
(AC193067) Microcebus murinus clone CH257-258N1, WORKING DRA... 38 0.54 2
(AC128543) Rattus norvegicus clone CH230-389E10, WORKING DRA... 38 0.54 2
(AC163521) Bos taurus clone CH240-142K1, *** SEQUENCING IN P... 38 0.54 2
(AC125467) Mus musculus BAC clone RP24-91P24 from chromosome... 38 0.54 2
(AC182232) Mus musculus chromosome 17 clone RP23-477N21, WOR... 38 0.54 2
(AC108448) Homo sapiens chromosome 11, clone CTD-2544D21, co... 38 0.54 2
(AC232269) Homo sapiens chromosome 3 clone RP11-1401K23, WOR... 38 0.54 2
(AC222423) Bos taurus clone CH240-417N13, WORKING DRAFT SEQU... 38 0.54 2
(AL590365) Human DNA sequence from clone RP11-455B2 on chrom... 38 0.54 2
(AC016430) Homo sapiens clone RP11-21D20, WORKING DRAFT SEQU... 38 0.54 2
(AC165485) Bos taurus clone CH240-172P1, WORKING DRAFT SEQUE... 38 0.54 2
(AC156406) Bos taurus clone CH240-58N7, WORKING DRAFT SEQUEN... 38 0.54 2
(AC134264) Rattus norvegicus clone CH230-364M11, WORKING DRA... 38 0.54 2
(AC020724) Homo sapiens chromosome 12 clone RP11-495K9, WORK... 38 0.54 2
(AC173049) Bos taurus clone CH240-126N21, WORKING DRAFT SEQU... 38 0.54 2
(AC117130) Rattus norvegicus clone CH230-320O24, WORKING DRA... 38 0.54 2
(AC191385) Pan troglodytes chromosome 11 clone CH251-510M10,... 38 0.54 2
(AC140064) Homo sapiens clone RP11-258E2, WORKING DRAFT SEQU... 38 0.54 2
(AC172924) Bos taurus clone CH240-306P23, WORKING DRAFT SEQU... 38 0.54 2
(AC114814) Homo sapiens BAC clone RP11-1345D17 from 2, compl... 36 0.54 2
(AC016765) Homo sapiens chromosome 11 clone RP11-555F1, WORK... 38 0.54 2
(AC117500) Homo sapiens 12 BAC RP11-495K9 (Roswell Park Canc... 38 0.54 2
(AC036196) Homo sapiens chromosome 15, clone RP11-599A21, co... 38 0.54 2
(AL121581) Human DNA sequence from clone RP5-1022E24 on chro... 38 0.54 2
(CT978655) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.54 2
(AC220560) Bos taurus clone CH240-354A4, WORKING DRAFT SEQUE... 38 0.54 2
(AC120408) Mus musculus chromosome 5, clone RP24-433N14, com... 38 0.54 2
(AC157761) Mus musculus chromosome 5, clone RP23-446J15, com... 38 0.54 2
(AC092850) Homo sapiens 12 BAC RP11-346B9 (Roswell Park Canc... 38 0.54 2
(CU915465) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.54 2
(AP003783) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 38 0.54 2
(AC115137) Rattus norvegicus clone CH230-339I17, WORKING DRA... 38 0.54 2
(AC084863) Papio anubis clone rp41-339m12, WORKING DRAFT SEQ... 38 0.54 2
(AC212601) Macaca mulatta BAC CH250-340P22 (Children's Hosp... 38 0.54 2
(AC147798) Mus musculus strain C57BL/6J chromosome 17 clone ... 38 0.54 2
(AC222422) Bos taurus clone CH240-417N12, WORKING DRAFT SEQU... 38 0.54 2
(AC188202) Papio hamadryas clone RP41-119B14, WORKING DRAFT ... 38 0.54 2
(CU442759) Mouse DNA sequence from clone DN-225H4 on chromos... 38 0.54 2
(AP001648) Homo sapiens genomic DNA, chromosome 11q, clone:R... 38 0.54 2
(AC093519) Homo sapiens chromosome 16 clone RP11-107C10, com... 38 0.54 2
(AC116808) Mus musculus chromosome 15, clone RP24-351J19, co... 38 0.54 2
(AC114653) Mus musculus chromosome 5, clone RP24-158G19, com... 38 0.54 2
(AC135782) Homo sapiens chromosome 16 clone CTD-2555A7, comp... 38 0.54 2
(AC147651) Homo sapiens BAC clone RP13-689E11 from 7, comple... 38 0.54 2
(AC149498) Mus musculus chromosome 17 clone RP24-129D12 map ... 38 0.54 2
(AC169466) Atelerix albiventris clone LB4-262M5, WORKING DRA... 38 0.54 2
(AC154239) Mus musculus BAC clone RP24-164C12 from chromosom... 38 0.54 2
(AC026668) Homo sapiens chromosome 1 clone RP11-659F6, WORKI... 38 0.54 2
(AC132186) Homo sapiens chromosome 16 clone CTD-2258A20, com... 38 0.54 2
(AC179819) Strongylocentrotus purpuratus clone R3-1012O4, WO... 38 0.54 2
(AC142158) Rattus norvegicus clone CH230-469N5, *** SEQUENCI... 38 0.54 2
(AC125878) Rattus norvegicus clone CH230-482M4, *** SEQUENCI... 38 0.54 2
(AC106739) Homo sapiens chromosome 16 clone CTD-3203P2, comp... 38 0.54 2
(AC128066) Rattus norvegicus clone CH230-465J23, WORKING DRA... 38 0.55 2
(AC188168) Pan troglodytes BAC clone CH251-165P4 from chromo... 38 0.55 2
(AC002351) Homo sapiens 12 PAC RP1-46F2 (Roswell Park Cancer... 36 0.55 2
(AC175773) Bos taurus clone CH240-382O4, WORKING DRAFT SEQUE... 38 0.55 2
(AC073621) Homo sapiens chromosome 17, clone CTD-3073J20, co... 38 0.55 2
(AC176839) Strongylocentrotus purpuratus clone R3-3120C11, W... 36 0.55 2
(AC210714) Macaca mulatta BAC CH250-462E2 (Children's Hospi... 38 0.55 2
(AC201294) Strongylocentrotus purpuratus clone R3-16G8, WORK... 38 0.55 2
(AC012153) Homo sapiens 11q BAC RP5-1045O21 (Roswell Park Ca... 38 0.55 2
(AC201485) Strongylocentrotus purpuratus clone R3-3060E20, W... 38 0.55 2
(AL023285) Human DNA sequence from clone RP3-474A14 on chrom... 38 0.56 2
(AC176239) Strongylocentrotus purpuratus clone R3-3061D02, W... 38 0.56 2
(AL049749) Human DNA sequence from clone RP1-293L6 on chromo... 36 0.56 2
(AC013277) Homo sapiens BAC clone RP11-480N9 from 2, complet... 38 0.56 2
(AL590079) Human chromosome 14 DNA sequence Partial sequence... 38 0.56 2
(DJ127129) Type2 diabetes susceptibility genes, and use ther... 36 0.56 2
(AC007623) Homo sapiens 12 BAC RP11-608E13 (Roswell Park Can... 38 0.56 2
(AL591962) Human DNA sequence from clone RP11-346O16 on chro... 38 0.56 2
(AC125792) Homo sapiens chromosome 16 clone CTD-3032L3, comp... 38 0.57 2
(EF445001) Homo sapiens glycylpeptide N-tetradecanoyltransfe... 38 0.57 2
(AC116492) Homo sapiens chromosome 17 clone CTD-3136H24 map ... 38 0.57 2
(AC133883) Homo sapiens chromosome 8, clone RP11-945N8, comp... 38 0.58 2
(AC208003) Homo sapiens chromosome UNK clone ABC12-46901600F... 38 0.58 2
(AF140707) Mus musculus T-complex responder locus-related se... 38 0.59 2
(AF140708) Mus musculus G protein coupled receptor gene, com... 38 0.59 2
(BX284661) Human DNA sequence from clone RP1-293L6 on chromo... 36 0.60 2
(CW928259) EDCBQ37TF A. castellanii, 6-8 kb library from tot... 38 0.69 2
(CT423648) Sus scrofa genomic clone CH242-352D6, genomic sur... 38 0.70 2
(BZ216387) CH230-323G19.TJ CHORI-230 Segment 2 Rattus norveg... 38 0.70 2
(DE926834) Macropus eugenii DNA, BAC clone: MEB1-116B15_F, 5... 38 0.70 2
(EI182701) MUGQ_CH252P190F12Sp6_CN287_044 CHORI-252 Vervet M... 38 0.70 2
(DH778948) Rattus norvegicus DNA, BAC clone: RNB1-366I19, 5'... 38 0.71 2
(AZ986088) 2M0268J07F Mouse 10kb plasmid UUGC2M library Mus ... 38 0.71 2
(AL015522) F.rubripes GSS sequence, clone 079I09aE10. 38 0.71 2
(CQ336858) Sequence 10952 from Patent WO0157275. 38 0.71 2
(CQ299699) Sequence 10804 from Patent WO0186003. 38 0.71 2
(CQ262645) Sequence 10906 from Patent WO0157277. 38 0.71 2
(CQ224628) Sequence 11467 from Patent WO0157273. 38 0.71 2
(CQ176994) Sequence 8390 from Patent WO0157274. 38 0.71 2
(CQ141344) Sequence 11366 from Patent WO0157276. 38 0.71 2
(CQ102421) Sequence 11280 from Patent WO0157272. 38 0.71 2
(CQ071796) Sequence 7596 from Patent WO0157278. 38 0.71 2
(CQ341825) Sequence 15919 from Patent WO0157275. 36 0.72 2
(CQ304565) Sequence 15670 from Patent WO0186003. 36 0.72 2
(CQ267545) Sequence 15806 from Patent WO0157277. 36 0.72 2
(CQ229410) Sequence 16249 from Patent WO0157273. 36 0.72 2
(CQ206011) Sequence 8288 from Patent WO0157271. 36 0.72 2
(CQ181650) Sequence 13046 from Patent WO0157274. 36 0.72 2
(CQ146205) Sequence 16227 from Patent WO0157276. 36 0.72 2
(CQ107542) Sequence 16401 from Patent WO0157272. 36 0.72 2
(CQ076557) Sequence 12357 from Patent WO0157278. 36 0.72 2
(CQ057281) Sequence 8101 from Patent WO0157270. 36 0.72 2
(EC384037) PMAH-aaa91f02.g1 Lamprey_EST_Olfactory Petromyzon... 38 0.72 2
(EF796021) Mus musculus C57BL/6N IST10823H4BBF1 gene trap em... 38 0.72 2
(EA117032) Sequence 1216 from patent US 7205146. 40 0.73 2
(BU976228) HA03F22r HA Hordeum vulgare subsp. vulgare cDNA c... 38 0.73 2
(CQ349535) Sequence 23629 from Patent WO0157275. 38 0.74 2
(CQ312135) Sequence 23240 from Patent WO0186003. 38 0.74 2
(CQ275164) Sequence 23425 from Patent WO0157277. 38 0.74 2
(CQ237541) Sequence 24380 from Patent WO0157273. 38 0.74 2
(CQ186870) Sequence 18266 from Patent WO0157274. 38 0.74 2
(CQ154292) Sequence 24314 from Patent WO0157276. 38 0.74 2
(CQ115487) Sequence 24346 from Patent WO0157272. 38 0.74 2
(CQ080999) Sequence 16799 from Patent WO0157278. 38 0.74 2
(BE067345) PM1-BT0350-281299-002-b10 BT0350 Homo sapiens cDN... 38 0.76 2
(BX470146) Zebrafish DNA sequence from clone DKEY-126D11 in ... 48 0.99 1
(EJ974100) 1093022103773 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.99 1
(EJ337539) 1092963490387 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.99 1
(EJ224477) 1092351345500 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.99 1
(AX647633) Sequence 1825 from Patent EP1270724. 40 1.8 3
(AC097795) Rattus norvegicus clone CH230-60J21, WORKING DRAF... 34 1.8 2
(AC114711) Rattus norvegicus clone CH230-177M19, *** SEQUENC... 36 1.9 2
(AC096357) Rattus norvegicus clone CH230-39D17, WORKING DRAF... 36 1.9 2
(AC121295) Mus musculus clone RP23-213F10, *** SEQUENCING IN... 36 1.9 2
(AC094228) Rattus norvegicus clone CH230-3B14, *** SEQUENCIN... 36 1.9 2
(AC112578) Rattus norvegicus clone CH230-38G5, *** SEQUENCIN... 36 1.9 2
(AC129451) Rattus norvegicus clone CH230-10H11, *** SEQUENCI... 36 1.9 2
(AC137026) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 36 1.9 2
(AC116107) Mus musculus chromosome 1, clone RP23-28F18, comp... 36 1.9 2
(AC098031) Rattus norvegicus clone CH230-97B22, *** SEQUENCI... 36 1.9 2
(AC126194) Rattus norvegicus clone CH230-154G18, *** SEQUENC... 36 1.9 2
(AC109054) Rattus norvegicus clone CH230-110C10, WORKING DRA... 36 1.9 2
(AC125797) Rattus norvegicus clone CH230-5E11, WORKING DRAFT... 36 1.9 2
(AC112019) Rattus norvegicus clone CH230-16I4, *** SEQUENCIN... 36 1.9 2
(AC097882) Rattus norvegicus clone CH230-76D1, WORKING DRAFT... 36 1.9 2
(AC120821) Rattus norvegicus clone CH230-45N2, WORKING DRAFT... 36 1.9 2
(AC118353) Rattus norvegicus clone CH230-351F2, *** SEQUENCI... 36 1.9 2
(AC095162) Rattus norvegicus clone CH230-8K18, WORKING DRAFT... 34 1.9 2
(AC024898) Homo sapiens chromosome 3 clone RP11-508A20, WORK... 32 1.9 2
(AC136662) Rattus norvegicus clone CH230-267G22, WORKING DRA... 36 1.9 2
(AC094176) Rattus norvegicus clone CH230-2P4, WORKING DRAFT ... 36 1.9 2
(AC180797) Strongylocentrotus purpuratus clone R3-3073K20, W... 36 1.9 2
(AC114875) Rattus norvegicus clone CH230-192B1, *** SEQUENCI... 36 1.9 2
(AC122075) Rattus norvegicus clone CH230-273L7, *** SEQUENCI... 36 1.9 2
(AC113733) Rattus norvegicus clone CH230-209A20, WORKING DRA... 36 1.9 2
(AC109763) Rattus norvegicus clone CH230-312I20, *** SEQUENC... 34 1.9 2
(AC111441) Rattus norvegicus clone CH230-187I17, WORKING DRA... 36 1.9 2
(AC120779) Mus musculus strain C57BL/6J clone rp23-194d11 ma... 34 1.9 2
(AC093960) Rattus norvegicus Iddm BAC CH230-4G13 (Children's... 36 1.9 2
(AC134024) Rattus norvegicus clone CH230-143K10, WORKING DRA... 36 1.9 2
(AC134284) Rattus norvegicus clone CH230-102H9, WORKING DRAF... 36 1.9 2
(AC112525) Rattus norvegicus clone CH230-233J14, *** SEQUENC... 36 1.9 2
(AC122898) Mus musculus BAC clone RP23-71K9 from 1, complete... 36 1.9 2
(AC007221) Homo sapiens chromosome 16 clone RPCI-11_418I22, ... 36 1.9 2
(AC140675) Mus musculus BAC clone RP23-44J10 from chromosome... 36 1.9 2
(AC133841) Rattus norvegicus clone CH230-127O22, WORKING DRA... 34 1.9 2

>(C23806) Dictyostelium discoideum gamete cDNA, clone FCL-AA12.
Length = 629

Score = 1191 bits (601), Expect = 0.0
Identities = 604/605 (99%)
Strand = Plus / Plus


Query: 355 catcagattcaattgtttgtaatcgttatattcatccagccattgttgttttggttgacc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 catcagattcaattgtttgtaatcgttatattcatccagccattgttgttttggttgacc 84


Query: 415 aagaggtaattagtcaaacctctggttatttaattgtaaatgcttcattggttcaacaca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 aagaggtaattagtcaaacctctggttatttaattgtaaatgcttcattggttcaacaca 144


Query: 475 attcaaagaatgtaaacactaacaacagcgaaaaccaattactccaaggtgttaaaagtg 534
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 145 attcaaagaatgtaaacactaacaacagcaaaaaccaattactccaaggtgttaaaagtg 204


Query: 535 ttctcgttgaaaagaatggtgttgttattttcaacaagttgaagccaagtgaactcgccg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttctcgttgaaaagaatggtgttgttattttcaacaagttgaagccaagtgaactcgccg 264


Query: 595 ccaaacttcctggtcaattattcagcatttgttttactctttctgatatctcatcagttg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaaacttcctggtcaattattcagcatttgttttactctttctgatatctcatcagttg 324


Query: 655 ataaacaaagtcatgtcatttctcaagtcactacctcaccattttacattgtttctaaac 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaacaaagtcatgtcatttctcaagtcactacctcaccattttacattgtttctaaac 384


Query: 715 caaacaaaagaaagagtgacgaaattgattcatcagatgaaccatcatcaccattgactc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaacaaaagaaagagtgacgaaattgattcatcagatgaaccatcatcaccattgactc 444


Query: 775 aaaaagtttgttcaccaccatcatcaccatctcttatggtttctccatccaacagtgcca 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaagtttgttcaccaccatcatcaccatctcttatggtttctccatccaacagtgcca 504


Query: 835 acaagattgaagataattcagttatttcaactgatttaaattatatagatatcactgatc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaagattgaagataattcagttatttcaactgatttaaattatatagatatcactgatc 564


Query: 895 tattaattttaccacaaaaagaagctgcttcaaaattgggtatctctgagtcaatgttgt 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattaattttaccacaaaaagaagctgcttcaaaattgggtatctctgagtcaatgttgt 624


Query: 955 gtaaa 959
|||||
Sbjct: 625 gtaaa 629

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,301,890,413
Number of extensions: 80181371
Number of successful extensions: 6931560
Number of sequences better than 10.0: 859
Length of query: 1534
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1510
Effective length of database: 96,409,374,237
Effective search space: 145578155097870
Effective search space used: 145578155097870
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.20
Homology vs Protein
Query= Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Contig-U16034-1Q.Seq.d
(1534 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,709,467,735
Number of extensions: 27844873
Number of successful extensions: 54688
Number of sequences better than 10.0: 0
Number of HSP's gapped: 54665
Number of HSP's successfully gapped: 0
Length of query: 511
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 378
Effective length of database: 620,718,517
Effective search space: 234631599426
Effective search space used: 234631599426
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.45 gvh: 0.22 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.13
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for Contig-U16034-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 1
FC (DIR, S) 1
FC-IC (SUB) 0