Contig-U16021-1 |
Contig ID |
Contig-U16021-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
897 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
4464700 |
End point |
4463885 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
12 |
Number of EST |
13 |
Link to clone list |
U16021 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
Query= Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Contig-U16021-1Q.Seq.d (907 letters)
Database: CSM 8402 sequences; 8,075,542 total letters
Score E Sequences producing significant alignments: (bits) Value
Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Conti... 531 e-151 Contig-U15990-1 (Contig-U15990-1Q) /CSM_Contig/Conti... 54 4e-07 Contig-U16414-1 (Contig-U16414-1Q) /CSM_Contig/Conti... 50 6e-06 Contig-U16255-1 (Contig-U16255-1Q) /CSM_Contig/Conti... 50 6e-06 Contig-U15600-1 (Contig-U15600-1Q) /CSM_Contig/Conti... 50 6e-06 Contig-U13327-1 (Contig-U13327-1Q) /CSM_Contig/Conti... 50 6e-06 Contig-U13039-1 (Contig-U13039-1Q) /CSM_Contig/Conti... 44 4e-04 Contig-U10579-1 (Contig-U10579-1Q) /CSM_Contig/Conti... 44 4e-04 Contig-U14444-1 (Contig-U14444-1Q) /CSM_Contig/Conti... 38 0.023 Contig-U14375-1 (Contig-U14375-1Q) /CSM_Contig/Conti... 32 1.4
>Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Contig-U16021-1Q.Seq.d Length = 907
Score = 531 bits (268), Expect = e-151 Identities = 268/268 (100%) Strand = Plus / Plus
Query: 252 tgacagaaacatctactgctaaagttgccacaacaaagaaatcaacaactacaagaaaac 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 tgacagaaacatctactgctaaagttgccacaacaaagaaatcaacaactacaagaaaac 311
Query: 312 cattttctcttcaaggtgttattactcattccagttcaagaacaataatcaaagcaccag 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 cattttctcttcaaggtgttattactcattccagttcaagaacaataatcaaagcaccag 371
Query: 372 aaagattagcagatcaaccaccagttgcttccaaagttgttcgtaagaaatcaaccacaa 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 aaagattagcagatcaaccaccagttgcttccaaagttgttcgtaagaaatcaaccacaa 431
Query: 432 cagttaagccaaccactgcaatcaaaaagaaagttgaaaagaagaaagttgttgcattaa 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 cagttaagccaaccactgcaatcaaaaagaaagttgaaaagaagaaagttgttgcattaa 491
Query: 492 agaaaactgcttcagcttcttcatctgg 519 |||||||||||||||||||||||||||| Sbjct: 492 agaaaactgcttcagcttcttcatctgg 519
Score = 131 bits (66), Expect = 2e-30 Identities = 88/96 (91%) Strand = Plus / Plus
Query: 573 gggaaaaatcattacagtttccattaattgtacatacattcaaatatnnnnnnnnngggn 632 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 573 gggaaaaatcattacagtttccattaattgtacatacattcaaatataaaaaaaangggn 632
Query: 633 aaaatcattacagtttccattaattgtacatacatt 668 |||||||||||||||||||||||||||||||||||| Sbjct: 633 aaaatcattacagtttccattaattgtacatacatt 668
Score = 115 bits (58), Expect = 1e-25 Identities = 98/118 (83%) Strand = Plus / Plus
Query: 116 aatcaattttaaatatattatagnnnnnnnncagttgactaccaactaaacttttccctt 175 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 116 aatcaattttaaatatattatagaaaaaaaacagttgactaccaactaaacttttccctt 175
Query: 176 tttttctnnnnnnnnnnnnttaaataaaattttatcattatcaataactcaaccaacc 233 ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 176 tttttctaaaaaaaaaaaattaaataaaattttatcattatcaataactcaaccaacc 233
Score = 67.9 bits (34), Expect = 3e-11 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 844 caattcaccttttttttttttggttttttttttt 877 |||||||||||||||||||||||||||||||||| Sbjct: 844 caattcaccttttttttttttggttttttttttt 877
Score = 60.0 bits (30), Expect = 6e-09 Identities = 30/30 (100%) Strand = Plus / Plus
Query: 726 taaacttttttttttaatgattattattat 755 |||||||||||||||||||||||||||||| Sbjct: 726 taaacttttttttttaatgattattattat 755
Score = 50.1 bits (25), Expect = 6e-06 Identities = 25/25 (100%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 ||||||||||||||||||||||||| Sbjct: 825 ttttttttttttggttttttttttt 801
Score = 38.2 bits (19), Expect = 0.023 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1 gttaatttttactaatccc 19 ||||||||||||||||||| Sbjct: 1 gttaatttttactaatccc 19
Score = 36.2 bits (18), Expect = 0.091 Identities = 24/26 (92%) Strand = Plus / Minus
Query: 852 cttttttttttttggttttttttttt 877 ||||||||||||| ||||||||||| Sbjct: 709 cttttttttttttttttttttttttt 684
Score = 34.2 bits (17), Expect = 0.36 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 783 tttttccttccaatttt 799 ||||||||||||||||| Sbjct: 783 tttttccttccaatttt 799
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 703 ttttttttttttttttttttttttt 679
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 702 ttttttttttttttttttttttttt 678
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 707 ttttttttttttttttttttttttt 683
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 903 ttttttttttttttttttttttttt 879
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 906 ttttttttttttttttttttttttt 882
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 706 ttttttttttttttttttttttttt 682
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 905 ttttttttttttttttttttttttt 881
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 701 ttttttttttttttttttttttttt 677
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 704 ttttttttttttttttttttttttt 680
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 722 tttttttttttttcttttttttttt 698
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 904 ttttttttttttttttttttttttt 880
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 902 ttttttttttttttttttttttttt 878
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 705 ttttttttttttttttttttttttt 681
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 700 ttttttttttttttttttttttttt 676
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 907 ttttttttttttttttttttttttt 883
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 721 ttttttttttttctttttttttttt 697
Score = 32.2 bits (16), Expect = 1.4 Identities = 16/16 (100%) Strand = Plus / Minus
Query: 853 ttttttttttttggtt 868 |||||||||||||||| Sbjct: 245 ttttttttttttggtt 230
Score = 32.2 bits (16), Expect = 1.4 Identities = 22/24 (91%) Strand = Plus / Minus
Query: 854 tttttttttttggttttttttttt 877 ||||||||||| ||||||||||| Sbjct: 843 tttttttttttccttttttttttt 820
>Contig-U15990-1 (Contig-U15990-1Q) /CSM_Contig/Contig-U15990-1Q.Seq.d Length = 872
Score = 54.0 bits (27), Expect = 4e-07 Identities = 27/27 (100%) Strand = Plus / Plus
Query: 851 ccttttttttttttggttttttttttt 877 ||||||||||||||||||||||||||| Sbjct: 648 ccttttttttttttggttttttttttt 674
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 824 ttttttttttttttttttttttttt 800
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 822 ttttttttttttttttttttttttt 798
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 867 ttttttttttttttttttttttttt 843
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 790 ttttttttttttttttttttttttt 766
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 723 ttttttttttttttttttttttttt 699
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 871 ttttttttttttttttttttttttt 847
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 813 ttttttttttttttttttttttttt 789
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 860 ttttttttttttttttttttttttt 836
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 792 ttttttttttttttttttttttttt 768
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 865 ttttttttttttttttttttttttt 841
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 872 ttttttttttttttttttttttttt 848
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 722 ttttttttttttttttttttttttt 698
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 781 ttttttttttttttttttttttttt 757
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 780 ttttttttttttttttttttttttt 756
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 785 ttttttttttttttttttttttttt 761
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 784 ttttttttttttttttttttttttt 760
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 783 ttttttttttttttttttttttttt 759
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 782 ttttttttttttttttttttttttt 758
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 788 ttttttttttttttttttttttttt 764
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 806 ttttttttttttttttttttttttt 782
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 811 ttttttttttttttttttttttttt 787
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 817 ttttttttttttttttttttttttt 793
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 868 ttttttttttttttttttttttttt 844
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 815 ttttttttttttttttttttttttt 791
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 862 ttttttttttttttttttttttttt 838
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 869 ttttttttttttttttttttttttt 845
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 810 ttttttttttttttttttttttttt 786
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 866 ttttttttttttttttttttttttt 842
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 827 ttttttttttttttttttttttttt 803
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 725 ttttttttttttttttttttttttt 701
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 797 ttttttttttttttttttttttttt 773
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 796 ttttttttttttttttttttttttt 772
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 795 ttttttttttttttttttttttttt 771
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 794 ttttttttttttttttttttttttt 770
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 801 ttttttttttttttttttttttttt 777
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 800 ttttttttttttttttttttttttt 776
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 799 ttttttttttttttttttttttttt 775
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 798 ttttttttttttttttttttttttt 774
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 805 ttttttttttttttttttttttttt 781
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 804 ttttttttttttttttttttttttt 780
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 803 ttttttttttttttttttttttttt 779
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 802 ttttttttttttttttttttttttt 778
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 809 ttttttttttttttttttttttttt 785
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 789 ttttttttttttttttttttttttt 765
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 812 ttttttttttttttttttttttttt 788
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 861 ttttttttttttttttttttttttt 837
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 870 ttttttttttttttttttttttttt 846
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 816 ttttttttttttttttttttttttt 792
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 863 ttttttttttttttttttttttttt 839
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 814 ttttttttttttttttttttttttt 790
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 786 ttttttttttttttttttttttttt 762
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 724 ttttttttttttttttttttttttt 700
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 819 ttttttttttttttttttttttttt 795
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 793 ttttttttttttttttttttttttt 769
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 821 ttttttttttttttttttttttttt 797
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 820 ttttttttttttttttttttttttt 796
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 858 ttttttttttttttttttttttttt 834
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 818 ttttttttttttttttttttttttt 794
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 864 ttttttttttttttttttttttttt 840
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 726 ttttttttttttttttttttttttt 702
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 823 ttttttttttttttttttttttttt 799
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 787 ttttttttttttttttttttttttt 763
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 829 ttttttttttttttttttttttttt 805
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 828 ttttttttttttttttttttttttt 804
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 859 ttttttttttttttttttttttttt 835
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 826 ttttttttttttttttttttttttt 802
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 833 ttttttttttttttttttttttttt 809
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 832 ttttttttttttttttttttttttt 808
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 831 ttttttttttttttttttttttttt 807
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 830 ttttttttttttttttttttttttt 806
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 837 ttttttttttttttttttttttttt 813
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 836 ttttttttttttttttttttttttt 812
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 835 ttttttttttttttttttttttttt 811
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 834 ttttttttttttttttttttttttt 810
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 841 ttttttttttttttttttttttttt 817
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 840 ttttttttttttttttttttttttt 816
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 839 ttttttttttttttttttttttttt 815
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 838 ttttttttttttttttttttttttt 814
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 845 ttttttttttttttttttttttttt 821
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 844 ttttttttttttttttttttttttt 820
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 843 ttttttttttttttttttttttttt 819
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 842 ttttttttttttttttttttttttt 818
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 849 ttttttttttttttttttttttttt 825
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 848 ttttttttttttttttttttttttt 824
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 847 ttttttttttttttttttttttttt 823
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 846 ttttttttttttttttttttttttt 822
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 853 ttttttttttttttttttttttttt 829
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 852 ttttttttttttttttttttttttt 828
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 851 ttttttttttttttttttttttttt 827
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 850 ttttttttttttttttttttttttt 826
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 857 ttttttttttttttttttttttttt 833
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 856 ttttttttttttttttttttttttt 832
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 855 ttttttttttttttttttttttttt 831
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 854 ttttttttttttttttttttttttt 830
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 808 ttttttttttttttttttttttttt 784
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 807 ttttttttttttttttttttttttt 783
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 791 ttttttttttttttttttttttttt 767
Score = 34.2 bits (17), Expect = 0.36 Identities = 23/25 (92%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 |||||||||||| ||||||||||| Sbjct: 825 ttttttttttttttttttttttttt 801
>Contig-U16414-1 (Contig-U16414-1Q) /CSM_Contig/Contig-U16414-1Q.Seq.d Length = 984
Score = 50.1 bits (25), Expect = 6e-06 Identities = 25/25 (100%) Strand = Plus / Minus
Query: 853 ttttttttttttggttttttttttt 877 ||||||||||||||||||||||||| Sbjct: 859 ttttttttttttggttttttttttt 835
Score = 34.2 bits (17), Expect = 0.36 Identities = 17/17 (100%) Strand = Plus / Minus
Query: 853 ttttttttttttggttt 869 ||||||||||||||||| Sbjct: 843 ttttttttttttggttt 827
Database: CSM Posted date: Jun 21, 2004 1:35 PM Number of letters in database: 8,075,542 Number of sequences in database: 8402 Lambda K H 1.37 0.711 1.31
Gapped Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 190,991 Number of Sequences: 8402 Number of extensions: 190991 Number of successful extensions: 60120 Number of sequences better than 10.0: 2432 length of query: 907 length of database: 8,075,542 effective HSP length: 16 effective length of query: 891 effective length of database: 7,941,110 effective search space: 7075529010 effective search space used: 7075529010 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 15 (30.2 bits)
|
dna update |
2009. 3. 8 |
Homology vs DNA |
Query= Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Contig-U16021-1Q.Seq.d (907 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C89944) Dictyostelium discoideum slug cDNA, clone SSG674. 402 e-166 5 (AU284983) Dictyostelium discoideum gamete cDNA clone:FC-BS0... 402 e-163 5 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 268 e-153 9 (C25663) Dictyostelium discoideum slug cDNA, clone SSB111. 402 e-136 4 (C90392) Dictyostelium discoideum slug cDNA, clone SSI348. 402 e-135 4 (C91365) Dictyostelium discoideum slug cDNA, clone SSK129. 355 e-116 3 (AU072088) Dictyostelium discoideum slug cDNA, clone SSD390. 287 e-101 3 (AU073880) Dictyostelium discoideum slug cDNA, clone SSI620. 285 e-100 3 (AU072602) Dictyostelium discoideum slug cDNA, clone SSA371. 270 e-100 3 (AU073779) Dictyostelium discoideum slug cDNA, clone SSI349. 299 e-100 3 (BJ406632) Dictyostelium discoideum cDNA clone:dds35n19, 3' ... 331 2e-92 2 (AU073205) Dictyostelium discoideum slug cDNA, clone SSG366. 224 1e-91 3 (C91575) Dictyostelium discoideum slug cDNA, clone SSK463. 133 2e-49 4 (C83849) Dictyostelium discoideum slug cDNA, clone SSA371. 68 5e-31 4 (EK286127) 1095462313718 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.037 1 (AC112460) Rattus norvegicus clone CH230-160M23, WORKING DRA... 50 0.15 1 (AC098755) Rattus norvegicus clone CH230-108G7, WORKING DRAF... 50 0.15 1 (AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 50 0.15 1 (AC137649) Bos taurus clone RP42-138N3, WORKING DRAFT SEQUEN... 48 0.58 1 (AC224829) Bos taurus clone CH240-474M23, WORKING DRAFT SEQU... 48 0.58 1 (AC222766) Bos taurus clone CH240-43B20, WORKING DRAFT SEQUE... 48 0.58 1 (AC218442) Bos taurus clone CH240-26K22, WORKING DRAFT SEQUE... 48 0.58 1 (FH292591) CHO_OF4215xi13r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.58 1 (FH292520) CHO_OF4215xi13f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.58 1 (CR384078) Zebrafish DNA sequence from clone DKEY-251E16 in ... 46 2.3 1 (GF019809) pRRL2:Newb:20080411:399634 USMARC Pig Breed SNP D... 46 2.3 1 (AC190169) Mus musculus BAC clone RP24-505O24 from chromosom... 46 2.3 1 (AC166934) Mus musculus chromosome 5, clone RP23-246A17, com... 46 2.3 1 (AC159235) Mus musculus BAC clone RP24-432L4 from chromosome... 46 2.3 1 (AC152821) Mus musculus BAC clone RP24-366H21 from chromosom... 46 2.3 1 (AC091274) Mus musculus chromosome 5, clone RP23-149A1, comp... 46 2.3 1 (AC092126) Homo sapiens chromosome 16 clone RP11-1114G22, co... 46 2.3 1 (AC019170) Homo sapiens BAC clone RP11-162G9 from 4, complet... 46 2.3 1 (AC018846) Homo sapiens chromosome 16 clone RP11-370P15, com... 46 2.3 1 (AC128610) Rattus norvegicus clone CH230-147F19, *** SEQUENC... 46 2.3 1 (CU469061) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (AC163989) Mus musculus chromosome 5 clone RP23-68N20 map 5,... 46 2.3 1 (AC016036) Homo sapiens clone RP11-23K12, LOW-PASS SEQUENCE ... 46 2.3 1 (AZ233977) RPCI-23-68N20.TJ RPCI-23 Mus musculus genomic clo... 46 2.3 1 (DE339098) Bombyx mori genomic DNA, BAC clone:BET_029_P07. 46 2.3 1 (BM161852) EST564375 PyBS Plasmodium yoelii yoelii cDNA clon... 46 2.3 1 (DQ368334) Haemophilus influenzae genotype II capsule gene l... 34 3.8 3 (DQ368335) Haemophilus influenzae genotype I capsule gene lo... 34 3.9 3 (AF549213) Haemophilus influenzae strain 1007 partially dupl... 34 3.9 3 (DB775432) Apis mellifera head cDNA, RIKEN full-length enric... 42 3.9 2 (AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 4.2 2 (DB774842) Apis mellifera head cDNA, RIKEN full-length enric... 42 4.3 2 (AY521265) Trialeurodes vaporariorum mitochondrion, complete... 32 4.9 2 (EE141166) SiJWF11CAP Lausanne fire ant library Solenopsis i... 32 6.0 2 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 42 6.2 6 (CC964502) BOIGT70TF BO_1.4_1.6_KB_nuc Brassica oleracea gen... 42 6.2 2 (CG972633) MBEBC63TFB mth2 Medicago truncatula genomic clone... 36 7.2 2 (BZ450599) BONDW38TR BO_1.6_2_KB_tot Brassica oleracea genom... 42 7.7 2 (CU571154) M.truncatula DNA sequence from clone MTH2-59O16 o... 44 9.0 1 (AM439885) Vitis vinifera contig VV78X024312.3, whole genome... 44 9.0 1 (AC147538) Medicago truncatula clone mth2-135c7, complete se... 44 9.0 1 (Z35719) Caenorhabditis elegans Cosmid F17C8. 44 9.0 1 (AC064846) Homo sapiens BAC clone RP11-59C11 from 2, complet... 44 9.0 1 (AC152836) Bos taurus clone CH240-18H23, *** SEQUENCING IN P... 44 9.0 1 (AC152569) Bos taurus clone CH240-18H1, *** SEQUENCING IN PR... 44 9.0 1 (AC118989) Canis lupus familiaris clone RP81-250M13, WORKING... 44 9.0 1 (CU928185) Brassica rapa subsp. pekinensis clone KBrH067F24,... 44 9.0 1 (CU695325) Brassica rapa subsp. pekinensis clone KBrH111L06,... 44 9.0 1 (AC199451) Macaca mulatta clone CH250-169L23, WORKING DRAFT ... 44 9.0 1 (AC190353) Aotus nancymaae clone CH258-516H7, WORKING DRAFT ... 44 9.0 1 (AC188491) Aotus nancymaae clone CH258-338C4, WORKING DRAFT ... 44 9.0 1 (AC173135) Bos taurus clone CH240-528K15, WORKING DRAFT SEQU... 44 9.0 1 (EJ885790) 1093018416847 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1 (EJ841163) 1093017833090 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1 (EJ839037) 1093017818402 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1 (EJ826745) 1093017564424 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1 (EJ811359) 1093017491411 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1 (EJ716006) 1092959418813 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1 (EJ654166) 1092954011413 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1 (EJ475723) 1095403441951 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.0 1 (EJ461444) 1093018553439 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.0 1 (CZ857587) OC__Ba0249E16.f OC__Ba Oryza coarctata genomic cl... 44 9.0 1 (CZ508011) GMW2-41H11a.b1 GMW2 Glycine max genomic, genomic ... 44 9.0 1 (CE089054) tigr-gss-dog-17000356977683 Dog Library Canis lup... 44 9.0 1 (DB770159) Apis mellifera head cDNA, RIKEN full-length enric... 44 9.0 1 (CP000107) Ehrlichia canis str. Jake, complete genome. 44 9.0 1
>(C89944) Dictyostelium discoideum slug cDNA, clone SSG674. Length = 514
Score = 402 bits (203), Expect(5) = e-166 Identities = 203/203 (100%) Strand = Plus / Plus
Query: 252 tgacagaaacatctactgctaaagttgccacaacaaagaaatcaacaactacaagaaaac 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 tgacagaaacatctactgctaaagttgccacaacaaagaaatcaacaactacaagaaaac 189
Query: 312 cattttctcttcaaggtgttattactcattccagttcaagaacaataatcaaagcaccag 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 cattttctcttcaaggtgttattactcattccagttcaagaacaataatcaaagcaccag 249
Query: 372 aaagattagcagatcaaccaccagttgcttccaaagttgttcgtaagaaatcaaccacaa 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 aaagattagcagatcaaccaccagttgcttccaaagttgttcgtaagaaatcaaccacaa 309
Query: 432 cagttaagccaaccactgcaatc 454 ||||||||||||||||||||||| Sbjct: 310 cagttaagccaaccactgcaatc 332
Score = 87.7 bits (44), Expect(5) = e-166 Identities = 44/44 (100%) Strand = Plus / Plus
Query: 139 aaaaaaaacagttgactaccaactaaacttttccctttttttct 182 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 aaaaaaaacagttgactaccaactaaacttttccctttttttct 62
Score = 77.8 bits (39), Expect(5) = e-166 Identities = 39/39 (100%) Strand = Plus / Plus
Query: 195 ttaaataaaattttatcattatcaataactcaaccaacc 233 ||||||||||||||||||||||||||||||||||||||| Sbjct: 75 ttaaataaaattttatcattatcaataactcaaccaacc 113
Score = 77.8 bits (39), Expect(5) = e-166 Identities = 39/39 (100%) Strand = Plus / Plus
Query: 581 tcattacagtttccattaattgtacatacattcaaatat 619 ||||||||||||||||||||||||||||||||||||||| Sbjct: 459 tcattacagtttccattaattgtacatacattcaaatat 497
Score = 46.1 bits (23), Expect(5) = e-166 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 498 ctgcttcagcttcttcatctggt 520 ||||||||||||||||||||||| Sbjct: 376 ctgcttcagcttcttcatctggt 398
Score = 73.8 bits (37), Expect = 1e-08 Identities = 39/40 (97%) Strand = Plus / Plus
Query: 629 gggnaaaatcattacagtttccattaattgtacatacatt 668 ||| |||||||||||||||||||||||||||||||||||| Sbjct: 451 gggaaaaatcattacagtttccattaattgtacatacatt 490
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 676,963,141 Number of extensions: 39937871 Number of successful extensions: 3473847 Number of sequences better than 10.0: 82 Length of query: 907 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 883 Effective length of database: 96,409,374,237 Effective search space: 85129477451271 Effective search space used: 85129477451271 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.20 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
10 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |