Contig-U16021-1
Contig ID Contig-U16021-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Contig-U16021-1Q.Seq.d
GTTAATTTTTACTAATCCCTTTTTTTTTTTTTTTTTTTTATCTGTTAATA
AATAAAAATAAAAATATAAAAAAAAAAATTAAAAAAATTAAAAATATCAA
CATTTTATTTTTTTTAATCAATTTTAAATATATTATAGAAAAAAAACAGT
TGACTACCAACTAAACTTTTCCCTTTTTTTCTAAAAAAAAAAAATTAAAT
AAAATTTTATCATTATCAATAACTCAACCAACCAAAAAAAAAAAAAAAAA
ATGACAGAAACATCTACTGCTAAAGTTGCCACAACAAAGAAATCAACAAC
TACAAGAAAACCATTTTCTCTTCAAGGTGTTATTACTCATTCCAGTTCAA
GAACAATAATCAAAGCACCAGAAAGATTAGCAGATCAACCACCAGTTGCT
TCCAAAGTTGTTCGTAAGAAATCAACCACAACAGTTAAGCCAACCACTGC
AATCAAAAAGAAAGTTGAAAAGAAGAAAGTTGTTGCATTAAAGAAAACTG
CTTCAGCTTCTTCATCTGGTAAAAAAGTTGTCGCCTCAAAAAAGAAAGTA
GTTGCCAAGAAATAAAAAAAAAGGGAAAAATCATTACAGTTTCCATTAAT
TGTACATACATTCAAATATAAAAAAAANGGGNAAAATCATTACAGTTTCC
ATTAATTGTACATACATTNNNNTNTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAAAAAAAAAAAAAATAAACTTTTTTTTTTAATGATTATT
ATTATAAAAAAAAAAAAAAAAA----------TTTTTCCTTCCAATTTTA
AAAAAAAAAAACCAAAAAAAAAAAAAAAAAGGAAAAAAAAAAACAATTCA
CCTTTTTTTTTTTTGGTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

Gap gap included
Contig length 897
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4464700
End point 4463885
Strand (PLUS/MINUS) MINUS
Number of clones 12
Number of EST 13
Link to clone list U16021
List of clone(s)

est1=SSK463E,1,234
est2=FC-BS08F,104,620
est3=SSG674E,122,636
est4=SSG366F,125,448
est5=SSA371E,147,772
est6=SSD390F,155,621
est7=SSI620F,155,637
est8=SSB111Z,161,557
est9=SSI348E,163,563
est10=SSI349F,163,563
est11=SSK129Z,249,620
est12=SHF779Z,288,583
est13=FC-BS08Z,773,897
Translated Amino Acid sequence
vnfy*slffffffic**ikiki*kkklkklkistfyff*silnil*kkns*lptklfpff
lkkkn*ikfyhyq*lnqpkkkkkndrniyc*schnkeinnykktifssrcyysfqfknnn
qstrkisrsttscfqscs*einhns*anhcnqkes*keesccikencfsffiw*kscrlk
kesscqeikkkgkiitvsinctyiqi*KKXXKSLQFPLIVHTXXXKKKKKKKKKKKEKKK
KNKLFFLMIIIIKKKKK---

---FFLPILKKKNQKKKKKGKKKTIHLFFFWFFFLKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
vnfy*slffffffic**ikiki*kkklkklkistfyff*silnil*kkns*lptklfpff
lkkkn*ikfyhyq*lnqpkkkkkndrniyc*schnkeinnykktifssrcyysfqfknnn
qstrkisrsttscfqscs*einhns*anhcnqkes*keesccikencfsffiw*kscrlk
kesscqeikkkgkiitvsinctyiqi*KKXXKSLQFPLIVHTXXXKKKKKKKKKKKEKKK
KNKLFFLMIIIIKKKKK---

---FFLPILKKKNQKKKKKGKKKTIHLFFFWFFFLKKKKKKKKK

Frame B:
liftnpfffffflsvnk*k*kykkkn*kn*kyqhfiffnqf*iyyrkktvdyqlnfslff
*kkkik*nfiiinnstnqkkkkkmtetstakvattkkstttrkpfslqgvithsssrtii
kaperladqppvaskvvrkkstttvkpttaikkkvekkkvvalkktasasssgkkvvask
kkvvakk*kkrekslqfplivhtfkykkxgxnhysfh*lyihxxxkkkkkkkkkkkkkkk
kinfff**lll*kkkkk---

---fsfqf*kkktkkkkkkekkkqftffffgfff*kkkkkkkkk

Frame C:
*fllipffffffyllinknknikkkikkikninilfflinfkyiiekkqlttn*tfpffs
kkkklnkilslsitqptkkkkkk*qkhlllklpqqrnqqlqenhflfkvlllipvqeq*s
khqkd*qinhqllpklfvrnqpqqlsqplqskrklkrrkllh*rkllqllhlvkklspqk
rk*lprnkkkgknhysfh*lyihsnikkxgkiitvsinctyixx*kkkkkkkkkkrkkkk
k*tfffndyyykkkkk---

---fpsnfkkkkpkkkkkrkkknnspffflvfffkkkkkkkkkk

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16021-1 (Contig-U16021-1Q)
/CSM_Contig/Contig-U16021-1Q.Seq.d
(907 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Conti... 531 e-151
Contig-U15990-1 (Contig-U15990-1Q) /CSM_Contig/Conti... 54 4e-07
Contig-U16414-1 (Contig-U16414-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U16255-1 (Contig-U16255-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U15600-1 (Contig-U15600-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U13327-1 (Contig-U13327-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U13039-1 (Contig-U13039-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U10579-1 (Contig-U10579-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U14444-1 (Contig-U14444-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U14375-1 (Contig-U14375-1Q) /CSM_Contig/Conti... 32 1.4

>Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Contig-U16021-1Q.Seq.d
Length = 907

Score = 531 bits (268), Expect = e-151
Identities = 268/268 (100%)
Strand = Plus / Plus


Query: 252 tgacagaaacatctactgctaaagttgccacaacaaagaaatcaacaactacaagaaaac 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgacagaaacatctactgctaaagttgccacaacaaagaaatcaacaactacaagaaaac 311


Query: 312 cattttctcttcaaggtgttattactcattccagttcaagaacaataatcaaagcaccag 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cattttctcttcaaggtgttattactcattccagttcaagaacaataatcaaagcaccag 371


Query: 372 aaagattagcagatcaaccaccagttgcttccaaagttgttcgtaagaaatcaaccacaa 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaagattagcagatcaaccaccagttgcttccaaagttgttcgtaagaaatcaaccacaa 431


Query: 432 cagttaagccaaccactgcaatcaaaaagaaagttgaaaagaagaaagttgttgcattaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagttaagccaaccactgcaatcaaaaagaaagttgaaaagaagaaagttgttgcattaa 491


Query: 492 agaaaactgcttcagcttcttcatctgg 519
||||||||||||||||||||||||||||
Sbjct: 492 agaaaactgcttcagcttcttcatctgg 519


Score = 131 bits (66), Expect = 2e-30
Identities = 88/96 (91%)
Strand = Plus / Plus


Query: 573 gggaaaaatcattacagtttccattaattgtacatacattcaaatatnnnnnnnnngggn 632
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 573 gggaaaaatcattacagtttccattaattgtacatacattcaaatataaaaaaaangggn 632


Query: 633 aaaatcattacagtttccattaattgtacatacatt 668
||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaaatcattacagtttccattaattgtacatacatt 668


Score = 115 bits (58), Expect = 1e-25
Identities = 98/118 (83%)
Strand = Plus / Plus


Query: 116 aatcaattttaaatatattatagnnnnnnnncagttgactaccaactaaacttttccctt 175
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 116 aatcaattttaaatatattatagaaaaaaaacagttgactaccaactaaacttttccctt 175


Query: 176 tttttctnnnnnnnnnnnnttaaataaaattttatcattatcaataactcaaccaacc 233
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tttttctaaaaaaaaaaaattaaataaaattttatcattatcaataactcaaccaacc 233


Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 844 caattcaccttttttttttttggttttttttttt 877
||||||||||||||||||||||||||||||||||
Sbjct: 844 caattcaccttttttttttttggttttttttttt 877


Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus


Query: 726 taaacttttttttttaatgattattattat 755
||||||||||||||||||||||||||||||
Sbjct: 726 taaacttttttttttaatgattattattat 755


Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||||||||||||||||
Sbjct: 825 ttttttttttttggttttttttttt 801


Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1 gttaatttttactaatccc 19
|||||||||||||||||||
Sbjct: 1 gttaatttttactaatccc 19


Score = 36.2 bits (18), Expect = 0.091
Identities = 24/26 (92%)
Strand = Plus / Minus


Query: 852 cttttttttttttggttttttttttt 877
||||||||||||| |||||||||||
Sbjct: 709 cttttttttttttttttttttttttt 684


Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 783 tttttccttccaatttt 799
|||||||||||||||||
Sbjct: 783 tttttccttccaatttt 799


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 703 ttttttttttttttttttttttttt 679


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 702 ttttttttttttttttttttttttt 678


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 707 ttttttttttttttttttttttttt 683


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 903 ttttttttttttttttttttttttt 879


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 906 ttttttttttttttttttttttttt 882


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 706 ttttttttttttttttttttttttt 682


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 905 ttttttttttttttttttttttttt 881


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 701 ttttttttttttttttttttttttt 677


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 704 ttttttttttttttttttttttttt 680


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 722 tttttttttttttcttttttttttt 698


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 904 ttttttttttttttttttttttttt 880


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 902 ttttttttttttttttttttttttt 878


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 705 ttttttttttttttttttttttttt 681


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 700 ttttttttttttttttttttttttt 676


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 907 ttttttttttttttttttttttttt 883


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 721 ttttttttttttctttttttttttt 697


Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 853 ttttttttttttggtt 868
||||||||||||||||
Sbjct: 245 ttttttttttttggtt 230


Score = 32.2 bits (16), Expect = 1.4
Identities = 22/24 (91%)
Strand = Plus / Minus


Query: 854 tttttttttttggttttttttttt 877
||||||||||| |||||||||||
Sbjct: 843 tttttttttttccttttttttttt 820


>Contig-U15990-1 (Contig-U15990-1Q) /CSM_Contig/Contig-U15990-1Q.Seq.d
Length = 872

Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 851 ccttttttttttttggttttttttttt 877
|||||||||||||||||||||||||||
Sbjct: 648 ccttttttttttttggttttttttttt 674


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 824 ttttttttttttttttttttttttt 800


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 822 ttttttttttttttttttttttttt 798


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 867 ttttttttttttttttttttttttt 843


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 790 ttttttttttttttttttttttttt 766


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 723 ttttttttttttttttttttttttt 699


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 871 ttttttttttttttttttttttttt 847


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 813 ttttttttttttttttttttttttt 789


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 860 ttttttttttttttttttttttttt 836


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 792 ttttttttttttttttttttttttt 768


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 865 ttttttttttttttttttttttttt 841


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 872 ttttttttttttttttttttttttt 848


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 722 ttttttttttttttttttttttttt 698


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 781 ttttttttttttttttttttttttt 757


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 780 ttttttttttttttttttttttttt 756


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 785 ttttttttttttttttttttttttt 761


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 784 ttttttttttttttttttttttttt 760


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 783 ttttttttttttttttttttttttt 759


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 782 ttttttttttttttttttttttttt 758


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 788 ttttttttttttttttttttttttt 764


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 806 ttttttttttttttttttttttttt 782


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 811 ttttttttttttttttttttttttt 787


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 817 ttttttttttttttttttttttttt 793


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 868 ttttttttttttttttttttttttt 844


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 815 ttttttttttttttttttttttttt 791


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 862 ttttttttttttttttttttttttt 838


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 869 ttttttttttttttttttttttttt 845


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 810 ttttttttttttttttttttttttt 786


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 866 ttttttttttttttttttttttttt 842


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 827 ttttttttttttttttttttttttt 803


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 725 ttttttttttttttttttttttttt 701


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 797 ttttttttttttttttttttttttt 773


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 796 ttttttttttttttttttttttttt 772


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 795 ttttttttttttttttttttttttt 771


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 794 ttttttttttttttttttttttttt 770


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 801 ttttttttttttttttttttttttt 777


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 800 ttttttttttttttttttttttttt 776


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 799 ttttttttttttttttttttttttt 775


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 798 ttttttttttttttttttttttttt 774


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 805 ttttttttttttttttttttttttt 781


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 804 ttttttttttttttttttttttttt 780


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 803 ttttttttttttttttttttttttt 779


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 802 ttttttttttttttttttttttttt 778


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 809 ttttttttttttttttttttttttt 785


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 789 ttttttttttttttttttttttttt 765


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 812 ttttttttttttttttttttttttt 788


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 861 ttttttttttttttttttttttttt 837


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 870 ttttttttttttttttttttttttt 846


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 816 ttttttttttttttttttttttttt 792


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 863 ttttttttttttttttttttttttt 839


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 814 ttttttttttttttttttttttttt 790


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 786 ttttttttttttttttttttttttt 762


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 724 ttttttttttttttttttttttttt 700


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 819 ttttttttttttttttttttttttt 795


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 793 ttttttttttttttttttttttttt 769


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 821 ttttttttttttttttttttttttt 797


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 820 ttttttttttttttttttttttttt 796


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 858 ttttttttttttttttttttttttt 834


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 818 ttttttttttttttttttttttttt 794


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 864 ttttttttttttttttttttttttt 840


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 726 ttttttttttttttttttttttttt 702


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 823 ttttttttttttttttttttttttt 799


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 787 ttttttttttttttttttttttttt 763


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 829 ttttttttttttttttttttttttt 805


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 828 ttttttttttttttttttttttttt 804


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 859 ttttttttttttttttttttttttt 835


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 826 ttttttttttttttttttttttttt 802


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 833 ttttttttttttttttttttttttt 809


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 832 ttttttttttttttttttttttttt 808


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 831 ttttttttttttttttttttttttt 807


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 830 ttttttttttttttttttttttttt 806


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 837 ttttttttttttttttttttttttt 813


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 836 ttttttttttttttttttttttttt 812


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 835 ttttttttttttttttttttttttt 811


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 834 ttttttttttttttttttttttttt 810


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 841 ttttttttttttttttttttttttt 817


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 840 ttttttttttttttttttttttttt 816


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 839 ttttttttttttttttttttttttt 815


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 838 ttttttttttttttttttttttttt 814


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 845 ttttttttttttttttttttttttt 821


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 844 ttttttttttttttttttttttttt 820


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 843 ttttttttttttttttttttttttt 819


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 842 ttttttttttttttttttttttttt 818


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 849 ttttttttttttttttttttttttt 825


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 848 ttttttttttttttttttttttttt 824


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 847 ttttttttttttttttttttttttt 823


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 846 ttttttttttttttttttttttttt 822


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 853 ttttttttttttttttttttttttt 829


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 852 ttttttttttttttttttttttttt 828


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 851 ttttttttttttttttttttttttt 827


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 850 ttttttttttttttttttttttttt 826


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 857 ttttttttttttttttttttttttt 833


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 856 ttttttttttttttttttttttttt 832


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 855 ttttttttttttttttttttttttt 831


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 854 ttttttttttttttttttttttttt 830


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 808 ttttttttttttttttttttttttt 784


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 807 ttttttttttttttttttttttttt 783


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 791 ttttttttttttttttttttttttt 767


Score = 34.2 bits (17), Expect = 0.36
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||| |||||||||||
Sbjct: 825 ttttttttttttttttttttttttt 801


>Contig-U16414-1 (Contig-U16414-1Q) /CSM_Contig/Contig-U16414-1Q.Seq.d
Length = 984

Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttttttttttt 877
|||||||||||||||||||||||||
Sbjct: 859 ttttttttttttggttttttttttt 835


Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 853 ttttttttttttggttt 869
|||||||||||||||||
Sbjct: 843 ttttttttttttggttt 827


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 190,991
Number of Sequences: 8402
Number of extensions: 190991
Number of successful extensions: 60120
Number of sequences better than 10.0: 2432
length of query: 907
length of database: 8,075,542
effective HSP length: 16
effective length of query: 891
effective length of database: 7,941,110
effective search space: 7075529010
effective search space used: 7075529010
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 8
Homology vs DNA
Query= Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Contig-U16021-1Q.Seq.d
(907 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C89944) Dictyostelium discoideum slug cDNA, clone SSG674. 402 e-166 5
(AU284983) Dictyostelium discoideum gamete cDNA clone:FC-BS0... 402 e-163 5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 268 e-153 9
(C25663) Dictyostelium discoideum slug cDNA, clone SSB111. 402 e-136 4
(C90392) Dictyostelium discoideum slug cDNA, clone SSI348. 402 e-135 4
(C91365) Dictyostelium discoideum slug cDNA, clone SSK129. 355 e-116 3
(AU072088) Dictyostelium discoideum slug cDNA, clone SSD390. 287 e-101 3
(AU073880) Dictyostelium discoideum slug cDNA, clone SSI620. 285 e-100 3
(AU072602) Dictyostelium discoideum slug cDNA, clone SSA371. 270 e-100 3
(AU073779) Dictyostelium discoideum slug cDNA, clone SSI349. 299 e-100 3
(BJ406632) Dictyostelium discoideum cDNA clone:dds35n19, 3' ... 331 2e-92 2
(AU073205) Dictyostelium discoideum slug cDNA, clone SSG366. 224 1e-91 3
(C91575) Dictyostelium discoideum slug cDNA, clone SSK463. 133 2e-49 4
(C83849) Dictyostelium discoideum slug cDNA, clone SSA371. 68 5e-31 4
(EK286127) 1095462313718 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.037 1
(AC112460) Rattus norvegicus clone CH230-160M23, WORKING DRA... 50 0.15 1
(AC098755) Rattus norvegicus clone CH230-108G7, WORKING DRAF... 50 0.15 1
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 50 0.15 1
(AC137649) Bos taurus clone RP42-138N3, WORKING DRAFT SEQUEN... 48 0.58 1
(AC224829) Bos taurus clone CH240-474M23, WORKING DRAFT SEQU... 48 0.58 1
(AC222766) Bos taurus clone CH240-43B20, WORKING DRAFT SEQUE... 48 0.58 1
(AC218442) Bos taurus clone CH240-26K22, WORKING DRAFT SEQUE... 48 0.58 1
(FH292591) CHO_OF4215xi13r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.58 1
(FH292520) CHO_OF4215xi13f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.58 1
(CR384078) Zebrafish DNA sequence from clone DKEY-251E16 in ... 46 2.3 1
(GF019809) pRRL2:Newb:20080411:399634 USMARC Pig Breed SNP D... 46 2.3 1
(AC190169) Mus musculus BAC clone RP24-505O24 from chromosom... 46 2.3 1
(AC166934) Mus musculus chromosome 5, clone RP23-246A17, com... 46 2.3 1
(AC159235) Mus musculus BAC clone RP24-432L4 from chromosome... 46 2.3 1
(AC152821) Mus musculus BAC clone RP24-366H21 from chromosom... 46 2.3 1
(AC091274) Mus musculus chromosome 5, clone RP23-149A1, comp... 46 2.3 1
(AC092126) Homo sapiens chromosome 16 clone RP11-1114G22, co... 46 2.3 1
(AC019170) Homo sapiens BAC clone RP11-162G9 from 4, complet... 46 2.3 1
(AC018846) Homo sapiens chromosome 16 clone RP11-370P15, com... 46 2.3 1
(AC128610) Rattus norvegicus clone CH230-147F19, *** SEQUENC... 46 2.3 1
(CU469061) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1
(AC163989) Mus musculus chromosome 5 clone RP23-68N20 map 5,... 46 2.3 1
(AC016036) Homo sapiens clone RP11-23K12, LOW-PASS SEQUENCE ... 46 2.3 1
(AZ233977) RPCI-23-68N20.TJ RPCI-23 Mus musculus genomic clo... 46 2.3 1
(DE339098) Bombyx mori genomic DNA, BAC clone:BET_029_P07. 46 2.3 1
(BM161852) EST564375 PyBS Plasmodium yoelii yoelii cDNA clon... 46 2.3 1
(DQ368334) Haemophilus influenzae genotype II capsule gene l... 34 3.8 3
(DQ368335) Haemophilus influenzae genotype I capsule gene lo... 34 3.9 3
(AF549213) Haemophilus influenzae strain 1007 partially dupl... 34 3.9 3
(DB775432) Apis mellifera head cDNA, RIKEN full-length enric... 42 3.9 2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 4.2 2
(DB774842) Apis mellifera head cDNA, RIKEN full-length enric... 42 4.3 2
(AY521265) Trialeurodes vaporariorum mitochondrion, complete... 32 4.9 2
(EE141166) SiJWF11CAP Lausanne fire ant library Solenopsis i... 32 6.0 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 42 6.2 6
(CC964502) BOIGT70TF BO_1.4_1.6_KB_nuc Brassica oleracea gen... 42 6.2 2
(CG972633) MBEBC63TFB mth2 Medicago truncatula genomic clone... 36 7.2 2
(BZ450599) BONDW38TR BO_1.6_2_KB_tot Brassica oleracea genom... 42 7.7 2
(CU571154) M.truncatula DNA sequence from clone MTH2-59O16 o... 44 9.0 1
(AM439885) Vitis vinifera contig VV78X024312.3, whole genome... 44 9.0 1
(AC147538) Medicago truncatula clone mth2-135c7, complete se... 44 9.0 1
(Z35719) Caenorhabditis elegans Cosmid F17C8. 44 9.0 1
(AC064846) Homo sapiens BAC clone RP11-59C11 from 2, complet... 44 9.0 1
(AC152836) Bos taurus clone CH240-18H23, *** SEQUENCING IN P... 44 9.0 1
(AC152569) Bos taurus clone CH240-18H1, *** SEQUENCING IN PR... 44 9.0 1
(AC118989) Canis lupus familiaris clone RP81-250M13, WORKING... 44 9.0 1
(CU928185) Brassica rapa subsp. pekinensis clone KBrH067F24,... 44 9.0 1
(CU695325) Brassica rapa subsp. pekinensis clone KBrH111L06,... 44 9.0 1
(AC199451) Macaca mulatta clone CH250-169L23, WORKING DRAFT ... 44 9.0 1
(AC190353) Aotus nancymaae clone CH258-516H7, WORKING DRAFT ... 44 9.0 1
(AC188491) Aotus nancymaae clone CH258-338C4, WORKING DRAFT ... 44 9.0 1
(AC173135) Bos taurus clone CH240-528K15, WORKING DRAFT SEQU... 44 9.0 1
(EJ885790) 1093018416847 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ841163) 1093017833090 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ839037) 1093017818402 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ826745) 1093017564424 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ811359) 1093017491411 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ716006) 1092959418813 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ654166) 1092954011413 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.0 1
(EJ475723) 1095403441951 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.0 1
(EJ461444) 1093018553439 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.0 1
(CZ857587) OC__Ba0249E16.f OC__Ba Oryza coarctata genomic cl... 44 9.0 1
(CZ508011) GMW2-41H11a.b1 GMW2 Glycine max genomic, genomic ... 44 9.0 1
(CE089054) tigr-gss-dog-17000356977683 Dog Library Canis lup... 44 9.0 1
(DB770159) Apis mellifera head cDNA, RIKEN full-length enric... 44 9.0 1
(CP000107) Ehrlichia canis str. Jake, complete genome. 44 9.0 1

>(C89944) Dictyostelium discoideum slug cDNA, clone SSG674.
Length = 514

Score = 402 bits (203), Expect(5) = e-166
Identities = 203/203 (100%)
Strand = Plus / Plus


Query: 252 tgacagaaacatctactgctaaagttgccacaacaaagaaatcaacaactacaagaaaac 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tgacagaaacatctactgctaaagttgccacaacaaagaaatcaacaactacaagaaaac 189


Query: 312 cattttctcttcaaggtgttattactcattccagttcaagaacaataatcaaagcaccag 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cattttctcttcaaggtgttattactcattccagttcaagaacaataatcaaagcaccag 249


Query: 372 aaagattagcagatcaaccaccagttgcttccaaagttgttcgtaagaaatcaaccacaa 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaagattagcagatcaaccaccagttgcttccaaagttgttcgtaagaaatcaaccacaa 309


Query: 432 cagttaagccaaccactgcaatc 454
|||||||||||||||||||||||
Sbjct: 310 cagttaagccaaccactgcaatc 332

Score = 87.7 bits (44), Expect(5) = e-166
Identities = 44/44 (100%)
Strand = Plus / Plus


Query: 139 aaaaaaaacagttgactaccaactaaacttttccctttttttct 182
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 aaaaaaaacagttgactaccaactaaacttttccctttttttct 62

Score = 77.8 bits (39), Expect(5) = e-166
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 195 ttaaataaaattttatcattatcaataactcaaccaacc 233
|||||||||||||||||||||||||||||||||||||||
Sbjct: 75 ttaaataaaattttatcattatcaataactcaaccaacc 113

Score = 77.8 bits (39), Expect(5) = e-166
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 581 tcattacagtttccattaattgtacatacattcaaatat 619
|||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcattacagtttccattaattgtacatacattcaaatat 497

Score = 46.1 bits (23), Expect(5) = e-166
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 498 ctgcttcagcttcttcatctggt 520
|||||||||||||||||||||||
Sbjct: 376 ctgcttcagcttcttcatctggt 398

Score = 73.8 bits (37), Expect = 1e-08
Identities = 39/40 (97%)
Strand = Plus / Plus


Query: 629 gggnaaaatcattacagtttccattaattgtacatacatt 668
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 451 gggaaaaatcattacagtttccattaattgtacatacatt 490

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 676,963,141
Number of extensions: 39937871
Number of successful extensions: 3473847
Number of sequences better than 10.0: 82
Length of query: 907
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 883
Effective length of database: 96,409,374,237
Effective search space: 85129477451271
Effective search space used: 85129477451271
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.20
Homology vs Protein
Query= Contig-U16021-1 (Contig-U16021-1Q) /CSM_Contig/Contig-U16021-1Q.Seq.d
(907 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q86HQ8) RecName: Full=Uncharacterized protein DDB_G0274469; &A... 59 2e-07

>(Q86HQ8) RecName: Full=Uncharacterized protein DDB_G0274469;
&AC116957_65(AC116957|pid:none)
Length = 104

Score = 59.3 bits (142), Expect = 2e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +2

Query: 311 PFSLQGVITHSSSRTIIKAPERLADQPP 394
PFSLQGVITHSSSRTIIKAPERLADQPP
Sbjct: 21 PFSLQGVITHSSSRTIIKAPERLADQPP 48

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 674,417,236
Number of extensions: 8745234
Number of successful extensions: 17003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16995
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 174
Effective length of database: 636,901,312
Effective search space: 110820828288
Effective search space used: 110820828288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.87 gvh: 0.43 alm: 0.39 top: 0.97 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 1.89 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U16021-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 10
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0