NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16020-1
Contig ID Contig-U16020-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16020-1 (Contig-U16020-1Q) /CSM_Contig/Contig-U16020-1Q.Seq.d
GAACAATTAAATCAATCTTTTGATGAAGTTTTAAAAGATTATTATAAAAA
TAAAGATATATTTGTATTAAAGAAATGTAATATGTTAGGTACAGTTGATC
AAAGTCATAAAAAAGAATTTAAAGATTTTGTTAATCAAACTTTGGATGAA
ATGTCAATGTTTGGATTTACAGCACAAGATTTATGGGAAGGCAATGCAGA
TTTAAAATTTTGGGTTGATAAAATTAAACATAAAATTGTATTAAATAATG
ATGAAAGATTTGTTGTAGAATTTGTATTACCTGAAATTTTAAATGAAAAT
AATAGTGTTTATAAACGTATTTATCGTGTACCAAATGATATATCAATTAA
AGATATTACAAATTTTTTATGTATTAAAACTCAAACCATTCAAGATTCAT
CGATTTATACATTATCAACTATTAAAGGTAAAGAATTGGATGGTGATGAT
TGTTTAGCAGATTATGGATTAGGTTCATTTTTTGATAATTGGCAATTGGT
GCTAGTTGAACGTGGTAAAACTAGAAGAGCTGGTATTTTCAATTTGGAGG
TCCATTTTCCAGATAATCCAGAATATAGAGGGTAGATATCATCGTGTATT
GGAATTCGGATGGGTTATATGACCTGCTTCAAAACCTTGTTAAATATATT
GGGTGAACCAATGGGATATCCGCTAAAATCCTCATCTATAATTGTATAAG
GATTAAGATTTAATTTTAAAATTCCAAATTCCCAAATTCTTTCCACCCAC
TTACCTTTCCATCATTCA----------CTGTTGGCCTACTGGTATAATT
TCAAGTTCAAATACCACACCAACTTCAATCATTTTAGAGGATGATGATTA
TTTAACAACTCATGGTTTAGGTTCGAAATTCTTAAAATGTAAATTAAAAC
TTTTACCTAAAAAGTTCCCAAAACCATCAAAAGATAAAAAATAAATTATG
AAATTACATCATTAATTGTAAATGATATTATTGAAAATGCATGGAAAGGT
ATATAATGAAAGAAAAGAAGAGAAAGCATCAATATTATGTAATGAAATTT
TAGATTCAATTATTGATATTGCAGTTACTGAATGTAAGAGAGCATCAACA
TTGTCATTGAGGATGGCTTCTGTGGGTTCGGGTTGGTCGATCGTATTTAT
ATAAATTATTAGCACAAAAAGAACAAGAGGAATTGAATTTCTATAAGATT
GATGGCCAGAAAATCGTTGCAAATGAAGCTAAAGATTTATTTAATAGTTT
ATCACCAATTAATATTCCAAATGGAAATGGTATTCAATTAGATGCTGAAA
ATAATAAAACTTCATTATTACATAGAGTTGCTCCACCACCTCCACCACCA
CTTTTAGGTTTTAAAGATTTTAAACCAAAGAAGAAATCAAATATTGATGA
TAATTCATCATCATCATCCTCCTCTTCATCAAGCCATATTAAATCAACAC
CAATGGGTTCAATGTTAGATATGAGTCAAATTTTAAATCAAAGAAGTAAA
TTAAGAGTAATGAAAAAGGATGAATCCACAACTACAACAACTCCAACCAA
TGATAAAGTTAACTTTACTTTGAGAAATACAAAAATCATATTGTTAAACC
AAATCAAGTTACAAATGAAACTAATGAATTAATGTTAAAACTTCAAAAGA
GAAATACTGCTGTAGCTGTAGATGCTGAAGATTTAGGTGATTCTTAAAAA
TTTGGATCTCAAAAATGATTTTTGAGATCTGAAAAAACCCATTTTTCAGA
TC
Gap gap included
Contig length 1742
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5419702
End point 5421462
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U16020
List of clone(s) 

est1=FC-BQ14F,1,768
est2=VFN142E,769,1599
est3=FC-BQ14Z,1019,1742
Translated Amino Acid sequence 
eqlnqsfdevlkdyyknkdifvlkkcnmlgtvdqshkkefkdfvnqtldemsmfgftaqd
lwegnadlkfwvdkikhkivlnnderfvvefvlpeilnennsvykriyrvpndisikdit
nflciktqtiqdssiytlstikgkeldgddcladyglgsffdnwqlvlvergktrragif
nlevhfpdnpeyrg*isscigirmgymtcfktllnilgepmgyplksssiiv*GLRFNFK
IPNSQILSTHLPFHHS---

---CWPTGIISSSNTTPTSIILEDDDYLTTHGLGSKFLKCKLKLLPKKFPKPSKDKK*im
klhh*l*millkmhgkvynerkeekasilcneildsiidiavteckrastlslrmasvgs
gwsivfi*iistkrtrgiefl*d*wpenrck*s*rfi**fitn*yskwkwysirc*k**n
fiit*scsttstttfrf*rf*tkeeiky***fiiiillfikpy*intngfnvryesnfks
kk*iksnekg*ihnynnsnq**s*lyfekyknhivkpnqvtnetnelmlklqkrntavav
daedlgds*kfgsqk*flrsekthfsd
Translated Amino Acid sequence (All Frames) 
Frame A:
eqlnqsfdevlkdyyknkdifvlkkcnmlgtvdqshkkefkdfvnqtldemsmfgftaqd
lwegnadlkfwvdkikhkivlnnderfvvefvlpeilnennsvykriyrvpndisikdit
nflciktqtiqdssiytlstikgkeldgddcladyglgsffdnwqlvlvergktrragif
nlevhfpdnpeyrg*isscigirmgymtcfktllnilgepmgyplksssiiv*GLRFNFK
IPNSQILSTHLPFHHS---

---llaywynfkfkyhtnfnhfrg**lfnnswfrfeilkm*iktft*kvpktikr*kiny
eitslivndiienawkgi**kkrresinim**nfrfny*ycsy*m*esiniviedgfcgf
glvdriyiny*hkknkrn*isirlmarkslqmklkiylivyhqlifqmemvfn*mlkiik
lhyyiellhhlhhhf*vlkilnqrrnqilmiihhhhpplhqailnqhqwvqc*i*vkf*i
kevn*e**krmnpqlqqlqpmikltll*eiqksyc*tkssyk*n**invktskekyccsc
rc*rfr*flkiwiskmifei*knpffr

Frame B:
nn*inllmkf*kiiikikiyly*rnvic*vqlikvikknlkilliklwmkcqcldlqhki
ygkamqi*nfgliklnikly*immkdll*nlyylkf*mkiivfinvfivyqmiyqlkilq
ifyvlklkpfkihrfihyqllkvknwmvmiv*qimd*vhfliignwc*lnvvkleelvfs
iwrsifqiiqniegryhrvlefgwvi*paskpc*iywvnqwdir*nphl*lykd*dlilk
fqipkffpptylsii---

---CWPTGIISSSNTTPTSIILEDDDYLTTHGLGSKFLKCKLKLLPKKFPKPSKDKK*im
klhh*l*millkmhgkvynerkeekasilcneildsiidiavteckrastlslrmasvgs
gwsivfi*iistkrtrgiefl*d*wpenrck*s*rfi**fitn*yskwkwysirc*k**n
fiit*scsttstttfrf*rf*tkeeiky***fiiiillfikpy*intngfnvryesnfks
kk*iksnekg*ihnynnsnq**s*lyfekyknhivkpnqvtnetnelmlklqkrntavav
daedlgds*kfgsqk*flrsekthfsd

Frame C:
tiksif**sfkrll*k*ryicikem*yvrys*sks*kri*rfc*snfg*nvnvwiystrf
mgrqcrfkilg**n*t*ncik***kiccricit*nfk*k**cl*tylsctk*yin*ryyk
ffmy*nsnhsrfidlyiiny*r*rigw**lfsrlwirfif**laigas*tw*n*kswyfq
fggpfsr*sri*rvdiivywnsdglydllqnlvkyig*tngisakiliynciriki*f*n
skfpnsfhpltfpsf---

---vgllv*fqvqiphqlqsf*rmmii*qlmv*vrns*nvn*nfylkssqnhqkiknkl*
nyiinck*yy*kcmeryimkekkrkhqyyvmkf*iqllilqllnvrehqhch*gwllwvr
vgrsylykllaqkeqeelnfykidgqkivaneakdlfnslspinipngngiqldaennkt
sllhrvappppppllgfkdfkpkkksniddnsssssssssshikstpmgsmldmsqilnq
rsklrvmkkdestttttptndkvnftlrntkiillnqiklqmklmn*c*nfkreill*l*
mlki*vilknldlkndf*dlkkpifqi
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16020-1 (Contig-U16020-1Q)
/CSM_Contig/Contig-U16020-1Q.Seq.d
         (1752 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16020-1 (Contig-U16020-1Q) /CSM_Contig/Conti...  3414  0.0
Contig-U15752-1 (Contig-U15752-1Q) /CSM_Contig/Conti...    60  1e-08
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U08202-1 (Contig-U08202-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U00999-1 (Contig-U00999-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U14740-1 (Contig-U14740-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U06648-1 (Contig-U06648-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U04171-1 (Contig-U04171-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U16098-1 (Contig-U16098-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U09190-1 (Contig-U09190-1Q) /CSM_Contig/Conti...    42  0.003

>Contig-U16020-1 (Contig-U16020-1Q) /CSM_Contig/Contig-U16020-1Q.Seq.d
          Length = 1752

 Score = 3414 bits (1722), Expect = 0.0
 Identities = 1752/1752 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    gaacaattaaatcaatcttttgatgaagttttaaaagattattataaaaataaagatata 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gaacaattaaatcaatcttttgatgaagttttaaaagattattataaaaataaagatata 60

                                                                        
Query: 61   tttgtattaaagaaatgtaatatgttaggtacagttgatcaaagtcataaaaaagaattt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tttgtattaaagaaatgtaatatgttaggtacagttgatcaaagtcataaaaaagaattt 120

                                                                        
Query: 121  aaagattttgttaatcaaactttggatgaaatgtcaatgtttggatttacagcacaagat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aaagattttgttaatcaaactttggatgaaatgtcaatgtttggatttacagcacaagat 180

                                                                        
Query: 181  ttatgggaaggcaatgcagatttaaaattttgggttgataaaattaaacataaaattgta 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  ttatgggaaggcaatgcagatttaaaattttgggttgataaaattaaacataaaattgta 240

                                                                        
Query: 241  ttaaataatgatgaaagatttgttgtagaatttgtattacctgaaattttaaatgaaaat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ttaaataatgatgaaagatttgttgtagaatttgtattacctgaaattttaaatgaaaat 300

                                                                        
Query: 301  aatagtgtttataaacgtatttatcgtgtaccaaatgatatatcaattaaagatattaca 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  aatagtgtttataaacgtatttatcgtgtaccaaatgatatatcaattaaagatattaca 360

                                                                        
Query: 361  aattttttatgtattaaaactcaaaccattcaagattcatcgatttatacattatcaact 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  aattttttatgtattaaaactcaaaccattcaagattcatcgatttatacattatcaact 420

                                                                        
Query: 421  attaaaggtaaagaattggatggtgatgattgtttagcagattatggattaggttcattt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  attaaaggtaaagaattggatggtgatgattgtttagcagattatggattaggttcattt 480

                                                                        
Query: 481  tttgataattggcaattggtgctagttgaacgtggtaaaactagaagagctggtattttc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  tttgataattggcaattggtgctagttgaacgtggtaaaactagaagagctggtattttc 540

                                                                        
Query: 541  aatttggaggtccattttccagataatccagaatatagagggtagatatcatcgtgtatt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  aatttggaggtccattttccagataatccagaatatagagggtagatatcatcgtgtatt 600

                                                                        
Query: 601  ggaattcggatgggttatatgacctgcttcaaaaccttgttaaatatattgggtgaacca 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ggaattcggatgggttatatgacctgcttcaaaaccttgttaaatatattgggtgaacca 660

                                                                        
Query: 661  atgggatatccgctaaaatcctcatctataattgtataaggattaagatttaattttaaa 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  atgggatatccgctaaaatcctcatctataattgtataaggattaagatttaattttaaa 720

                                                                        
Query: 721  attccaaattcccaaattctttccacccacttacctttccatcattcannnnnnnnnnct 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  attccaaattcccaaattctttccacccacttacctttccatcattcannnnnnnnnnct 780

                                                                        
Query: 781  gttggcctactggtataatttcaagttcaaataccacaccaacttcaatcattttagagg 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  gttggcctactggtataatttcaagttcaaataccacaccaacttcaatcattttagagg 840

                                                                        
Query: 841  atgatgattatttaacaactcatggtttaggttcgaaattcttaaaatgtaaattaaaac 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  atgatgattatttaacaactcatggtttaggttcgaaattcttaaaatgtaaattaaaac 900

                                                                        
Query: 901  ttttacctaaaaagttcccaaaaccatcaaaagataaaaaataaattatgaaattacatc 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  ttttacctaaaaagttcccaaaaccatcaaaagataaaaaataaattatgaaattacatc 960

                                                                        
Query: 961  attaattgtaaatgatattattgaaaatgcatggaaaggtatataatgaaagaaaagaag 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  attaattgtaaatgatattattgaaaatgcatggaaaggtatataatgaaagaaaagaag 1020

                                                                        
Query: 1021 agaaagcatcaatattatgtaatgaaattttagattcaattattgatattgcagttactg 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 agaaagcatcaatattatgtaatgaaattttagattcaattattgatattgcagttactg 1080

                                                                        
Query: 1081 aatgtaagagagcatcaacattgtcattgaggatggcttctgtgggttcgggttggtcga 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aatgtaagagagcatcaacattgtcattgaggatggcttctgtgggttcgggttggtcga 1140

                                                                        
Query: 1141 tcgtatttatataaattattagcacaaaaagaacaagaggaattgaatttctataagatt 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tcgtatttatataaattattagcacaaaaagaacaagaggaattgaatttctataagatt 1200

                                                                        
Query: 1201 gatggccagaaaatcgttgcaaatgaagctaaagatttatttaatagtttatcaccaatt 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gatggccagaaaatcgttgcaaatgaagctaaagatttatttaatagtttatcaccaatt 1260

                                                                        
Query: 1261 aatattccaaatggaaatggtattcaattagatgctgaaaataataaaacttcattatta 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aatattccaaatggaaatggtattcaattagatgctgaaaataataaaacttcattatta 1320

                                                                        
Query: 1321 catagagttgctccaccacctccaccaccacttttaggttttaaagattttaaaccaaag 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 catagagttgctccaccacctccaccaccacttttaggttttaaagattttaaaccaaag 1380

                                                                        
Query: 1381 aagaaatcaaatattgatgataattcatcatcatcatcctcctcttcatcaagccatatt 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 aagaaatcaaatattgatgataattcatcatcatcatcctcctcttcatcaagccatatt 1440

                                                                        
Query: 1441 aaatcaacaccaatgggttcaatgttagatatgagtcaaattttaaatcaaagaagtaaa 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 aaatcaacaccaatgggttcaatgttagatatgagtcaaattttaaatcaaagaagtaaa 1500

                                                                        
Query: 1501 ttaagagtaatgaaaaaggatgaatccacaactacaacaactccaaccaatgataaagtt 1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ttaagagtaatgaaaaaggatgaatccacaactacaacaactccaaccaatgataaagtt 1560

                                                                        
Query: 1561 aactttactttgagaaatacaaaaatcatattgttaaaccaaatcaagttacaaatgaaa 1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 aactttactttgagaaatacaaaaatcatattgttaaaccaaatcaagttacaaatgaaa 1620

                                                                        
Query: 1621 ctaatgaattaatgttaaaacttcaaaagagaaatactgctgtagctgtagatgctgaag 1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 ctaatgaattaatgttaaaacttcaaaagagaaatactgctgtagctgtagatgctgaag 1680

                                                                        
Query: 1681 atttaggtgattcttaaaaatttggatctcaaaaatgatttttgagatctgaaaaaaccc 1740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 atttaggtgattcttaaaaatttggatctcaaaaatgatttttgagatctgaaaaaaccc 1740

                        
Query: 1741 atttttcagatc 1752
            ||||||||||||
Sbjct: 1741 atttttcagatc 1752


 Score = 42.1 bits (21), Expect = 0.003
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1705 gatctcaaaaatgatttttgagatc 1729
            |||||||||||| ||||||||||||
Sbjct: 1729 gatctcaaaaatcatttttgagatc 1705


>Contig-U15752-1 (Contig-U15752-1Q) /CSM_Contig/Contig-U15752-1Q.Seq.d
          Length = 2308

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                          
Query: 1402 aattcatcatcatcatcctcctcttcatca 1431
            ||||||||||||||||||||||||||||||
Sbjct: 686  aattcatcatcatcatcctcctcttcatca 715


 Score = 34.2 bits (17), Expect = 0.70
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                     
Query: 1408 tcatcatcatcctcctcttcatcaa 1432
            |||||||||||||| || |||||||
Sbjct: 710  tcatcatcatcctcatcatcatcaa 734


 Score = 34.2 bits (17), Expect = 0.70
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 779 ctgttggcctactggta 795
           |||||||||||||||||
Sbjct: 1   ctgttggcctactggta 17


>Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Contig-U12528-1Q.Seq.d
          Length = 1995

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 1408 tcatcatcatcctcctcttcatca 1431
            ||||||||||||||||||||||||
Sbjct: 406  tcatcatcatcctcctcttcatca 383


 Score = 38.2 bits (19), Expect = 0.045
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1404 ttcatcatcatcatcctcctcttcatc 1430
            |||||| ||||||||||| ||||||||
Sbjct: 652  ttcatcttcatcatcctcatcttcatc 626


 Score = 36.2 bits (18), Expect = 0.18
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                      
Query: 1405 tcatcatcatcatcctcctcttcatc 1430
            |||||||||||||| || ||||||||
Sbjct: 448  tcatcatcatcatcttcttcttcatc 423


 Score = 32.2 bits (16), Expect = 2.8
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                    
Query: 1405 tcatcatcatcatcctcctcttca 1428
            |||||||||||||| || ||||||
Sbjct: 1158 tcatcatcatcatcatcttcttca 1135


 Score = 32.2 bits (16), Expect = 2.8
 Identities = 25/28 (89%)
 Strand = Plus / Minus

                                        
Query: 1404 ttcatcatcatcatcctcctcttcatca 1431
            |||||||||||| ||||| || ||||||
Sbjct: 407  ttcatcatcatcctcctcttcatcatca 380


 Score = 32.2 bits (16), Expect = 2.8
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                    
Query: 1404 ttcatcatcatcatcctcctcttc 1427
            ||||||||||||||| || |||||
Sbjct: 455  ttcatcatcatcatcatcatcttc 432


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,137
Number of Sequences: 8402
Number of extensions: 62137
Number of successful extensions: 10244
Number of sequences better than 10.0: 722
length of query: 1752
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1735
effective length of database: 7,932,708
effective search space: 13763248380
effective search space used: 13763248380
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 3. 8
Homology vs DNA 
Query= Contig-U16020-1 (Contig-U16020-1Q) /CSM_Contig/Contig-U16020-1Q.Seq.d
         (1752 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284936) Dictyostelium discoideum gamete cDNA clone:FC-BQ1...  1522   0.0    1
(BJ435484) Dictyostelium discoideum cDNA clone:ddv27c11, 3' ...  1294   0.0    1
(AU284937) Dictyostelium discoideum gamete cDNA clone:FC-BQ1...   892   0.0    3
(BJ416779) Dictyostelium discoideum cDNA clone:ddv27c11, 5' ...   293   0.0    4
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   5e-08  20
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    48   5e-07  15
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   9e-07  18
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    42   1e-06  18
(AY171067) Dictyostelium discoideum extrachromosomal palindr...    62   3e-06  2
(AY171065) Dictyostelium discoideum extrachromosomal palindr...    62   3e-06  2
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    38   3e-06  19
(CP000025) Campylobacter jejuni RM1221, complete genome.           46   5e-06  23
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    42   9e-06  15
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    42   2e-05  20
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   2e-05  20
(AL844507) Plasmodium falciparum chromosome 8.                     38   3e-05  19
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    42   5e-05  12
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    32   5e-05  17
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    42   6e-05  19
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   6e-05  17
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   1e-04  20
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    34   1e-04  10
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   2e-04  15
(BJ333506) Dictyostelium discoideum cDNA clone:dda43b02, 5' ...    60   3e-04  1
(BJ332958) Dictyostelium discoideum cDNA clone:dda41a02, 5' ...    60   3e-04  1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   3e-04  15
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         40   5e-04  19
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    38   5e-04  21
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    44   6e-04  7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    46   6e-04  16
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    38   7e-04  21
(CS468878) Sequence 69 from Patent EP1748080.                      30   7e-04  17
(CS468877) Sequence 68 from Patent EP1748080.                      30   7e-04  17
(CS419355) Sequence 69 from Patent WO2006094836.                   30   7e-04  17
(CS419354) Sequence 68 from Patent WO2006094836.                   30   7e-04  17
(CP000312) Clostridium perfringens SM101, complete genome.         38   8e-04  20
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    42   0.001  20
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   0.001  19
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    40   0.002  17
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    40   0.003  20
(AC022451) Homo sapiens chromosome 5 clone XXp1-1200G4, LOW-...    42   0.003  6
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    38   0.004  20
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    40   0.004  20
(AL844506) Plasmodium falciparum chromosome  7.                    34   0.004  20
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       36   0.004  20
(AC203553) Medicago truncatula clone mth2-33n7, WORKING DRAF...    38   0.004  8
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    34   0.005  18
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    36   0.005  12
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.006  13
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    42   0.006  22
(CP000727) Clostridium botulinum A str. Hall, complete genome.     36   0.006  19
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         38   0.008  21
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    36   0.008  19
(EK000322) 1093025044103 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.010  3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    30   0.012  16
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    54   0.014  6
(AF090533) Dictyostelium discoideum unconventional myosin he...    40   0.015  5
(AR584244) Sequence 1 from patent US 6797466.                      36   0.015  24
(AR271569) Sequence 1 from patent US 6503729.                      36   0.015  24
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    30   0.016  11
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    38   0.017  15
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  34   0.017  17
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   0.018  18
(BC043950) Xenopus laevis pescadillo, mRNA (cDNA clone MGC:5...    54   0.018  1
(EG638763) gmapht_0020c05.pDNRm13r.scf Gadus morhua heart li...    54   0.018  1
(DV594191) AGENCOURT_61885576 NIH_ZGC_14 Danio rerio cDNA cl...    54   0.018  1
(DB857567) Nilaparvata lugens mRNA, EST clone:NLSG3985, 5' e...    54   0.018  1
(DB857082) Nilaparvata lugens mRNA, EST clone:NLSG3082, 5' e...    54   0.018  1
(DB850563) Nilaparvata lugens mRNA, EST clone:NLMB0436, 5' e...    54   0.018  1
(CX130588) AGENCOURT_39738032 NICHD_XGC_Te2N Xenopus laevis ...    54   0.018  1
(CV129455) Mdst6004c16.y1 Mdst Malus x domestica cDNA clone ...    54   0.018  1
(BP735873) Xenopus laevis NBRP cDNA clone:XL506m16ex, 3' end.      54   0.018  1
(BP704513) Xenopus laevis NBRP cDNA clone:XL512d15ex, 5' end.      54   0.018  1
(FK259823) USDA-FP_195786 Asian citrus psyllid midgut (Hemip...    54   0.018  1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.023  17
(CP000048) Borrelia hermsii DAH, complete genome.                  36   0.024  20
(AB017910) Dictyostelium discoideum myoM gene, complete cds.       40   0.025  5
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       38   0.027  21
(AB092721) Carabus tamsi dashtensis ND5 gene for NADH dehydr...    32   0.028  4
(AB092720) Carabus tamsi tamsi ND5 gene for NADH dehydrogena...    32   0.028  4
(AP008934) Staphylococcus saprophyticus subsp. saprophyticus...    34   0.030  24
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.038  18
(EX879760) CcLXAa30b16n1 ECA Cyprinus carpio cDNA clone 30b1...    52   0.038  2
(X95275) Plasmodium falciparum complete gene map of plastid-...    34   0.039  7
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    38   0.040  17
(AE017308) Mycoplasma mobile 163K complete genome.                 40   0.040  15
(AC152068) Medicago truncatula chromosome 8 clone mth2-29p8,...    32   0.041  14
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    32   0.042  14
(AC092294) Homo sapiens chromosome 16 clone CTD-2584P4, WORK...    40   0.044  6
(AE017263) Mesoplasma florum L1 complete genome.                   36   0.046  19
(AC116919) Dictyostelium discoideum chromosome 2 map complem...    34   0.050  10
(AL844509) Plasmodium falciparum chromosome 13.                    42   0.062  15
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    36   0.065  21
(AC180455) Strongylocentrotus purpuratus clone R3-3100P24, W...    32   0.066  12
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    38   0.070  13
(EJ724681) 1092959488055 Global-Ocean-Sampling_GS-30-02-01-1...    52   0.072  1
(EJ723367) 1092959469821 Global-Ocean-Sampling_GS-30-02-01-1...    52   0.072  1
(EJ620993) 1092963062699 Global-Ocean-Sampling_GS-29-01-01-1...    52   0.072  1
(EC394564) CcLS1a76m22f1 Carp skin library 1 Cyprinus carpio...    52   0.072  1
(CN021224) AGENCOURT_20191555 NIH_ZGC_14 Danio rerio cDNA cl...    52   0.072  1
(CA911724) PCSC21363 Scarlet Runner Bean Suspensor Region Tr...    52   0.072  1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   0.081  11
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    34   0.087  15
(AC180306) Strongylocentrotus purpuratus clone R3-3119N12, W...    36   0.091  10
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    32   0.094  13
(CP000361) Arcobacter butzleri RM4018, complete genome.            40   0.099  21
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.11   16
(EJ405034) 1093012082639 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.11   2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.11   14
(CP000382) Clostridium novyi NT, complete genome.                  36   0.11   22
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.11   20
(EK000669) 1093025058791 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.12   2
(AC223447) Oryza officinalis clone OO__Ba0060O03, *** SEQUEN...    36   0.13   8
(EJ442811) 1093015311382 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.13   2
(AC189310) Brassica rapa subsp. pekinensis clone KBrB034G01,...    40   0.15   10
(AX345648) Sequence 719 from Patent WO0200928.                     34   0.15   6
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.15   17
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    36   0.16   15
(BJ413641) Dictyostelium discoideum cDNA clone:ddv16a13, 5' ...    34   0.16   4
(CP000976) Borrelia duttonii Ly, complete genome.                  36   0.18   20
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   0.18   14
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   0.19   20
(AC095552) Rattus norvegicus clone CH230-8B20, *** SEQUENCIN...    38   0.20   9
(BX005203) Zebrafish DNA sequence from clone DKEY-110C1 in l...    46   0.20   13
(BD453025) Diagnosis of Diseases Associated with tumor suppr...    38   0.20   8
(AX344503) Sequence 350 from Patent WO0200926.                     38   0.20   8
(AX251504) Sequence 472 from Patent WO0168912.                     38   0.20   8
(CP000728) Clostridium botulinum F str. Langeland, complete ...    36   0.21   19
(AC177189) Strongylocentrotus purpuratus clone R3-4018H23, W...    36   0.21   8
(BF696051) 601852040F1 NIH_MGC_56 Homo sapiens cDNA clone IM...    34   0.21   2
(BF540746) 602067435F1 NIH_MGC_58 Homo sapiens cDNA clone IM...    34   0.21   2
(BE787134) 601476685F1 NIH_MGC_68 Homo sapiens cDNA clone IM...    34   0.21   2
(AZ528997) ENTCU71TF Entamoeba histolytica Sheared DNA Entam...    38   0.22   4
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    36   0.22   24
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.24   16
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    40   0.25   13
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion...    34   0.25   11
(EX526831) MTGland-A072_2007-08-20/MTGland-72_M01_002_1 Medi...    38   0.26   2
(AL034559) Plasmodium falciparum MAL3P7.                           38   0.26   15
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    42   0.27   14
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    40   0.27   15
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   0.28   16
(CR855311) Zebrafish DNA sequence from clone DKEY-97I18 in l...    50   0.29   1
(BC045875) Danio rerio wu:fi20g04, mRNA (cDNA clone IMAGE:38...    50   0.29   1
(Z68296) Caenorhabditis elegans Cosmid C46C2.                      50   0.29   1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...    50   0.29   1
(AC157881) Monodelphis domestica clone VMRC6-553P21, WORKING...    50   0.29   1
(AC157455) Monodelphis domestica clone VMRC6-620K1, WORKING ...    50   0.29   1
(AC184179) Strongylocentrotus purpuratus clone R3-6C4, WORKI...    50   0.29   1
(AC178738) Strongylocentrotus purpuratus clone R3-13L11, WOR...    50   0.29   1
(CR714213) Tetraodon nigroviridis full-length cDNA.                50   0.29   1
(CR708229) Tetraodon nigroviridis full-length cDNA.                50   0.29   1
(CR687680) Tetraodon nigroviridis full-length cDNA.                50   0.29   1
(AZ155551) SP_0002_A2_D11_SP6E Strongylocentrotus purpuratus...    50   0.29   1
(AZ140618) SP_0002_A2_D11_T7 Strongylocentrotus purpuratus, ...    50   0.29   1
(DT426565) JGI_CABJ6422.fwd NIH_XGC_tropSki1 Xenopus (Silura...    50   0.29   1
(CT695444) Danio rerio EST, clone ZF_mu_284j04 5'.                 50   0.29   1
(CA471465) AGENCOURT_10698816 NCI_CGAP_ZKid1 Danio rerio cDN...    50   0.29   1
(CA250185) SCRUFL1115B07.b FL1 Saccharum officinarum cDNA cl...    50   0.29   1
(CA189175) SCCCLB1C03B09.g LB1 Saccharum officinarum cDNA cl...    50   0.29   1
(CA115364) SCSBLB1033B08.g LB1 Saccharum officinarum cDNA cl...    50   0.29   1
(BU239680) 603322339F1 CSEQCHN33 Gallus gallus cDNA clone Ch...    50   0.29   1
(BU180567) AGENCOURT_8046034 NIH_MGC_102 Homo sapiens cDNA c...    50   0.29   1
(BJ119691) Caenorhabditis elegans cDNA clone:yk1246g09 : 5' ...    50   0.29   1
(GD250618) HLUTR3CH_T3_023_C12_02APR2006_092 HLUTR3CH Humulu...    50   0.29   1
(FF480392) G613P6225RH12.T0 Acorn worm blastula/gastrula pCM...    50   0.29   1
(FF478085) G613P6185RD3.T0 Acorn worm blastula/gastrula pCMV...    50   0.29   1
(FF442129) G178P60011RE6.T0 Acorn worm gastrula/neurula pCMV...    50   0.29   1
(AM180355) Clostridium difficile 630 complete genome.              38   0.29   20
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    32   0.29   11
(BX897662) Zebrafish DNA sequence from clone DKEYP-118G6 in ...    46   0.30   8
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    36   0.31   22
(AL355989) Human DNA sequence from clone RP11-272J7 on chrom...    40   0.32   7
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   0.33   14
(AE010300) Leptospira interrogans serovar lai str. 56601 chr...    34   0.33   23
(BJ337145) Dictyostelium discoideum cDNA clone:dda56n09, 5' ...    44   0.33   2
(CP000817) Lysinibacillus sphaericus C3-41, complete genome.       38   0.35   23
(AX458577) Sequence 123 from Patent WO0246454.                     34   0.36   10
(BJ337197) Dictyostelium discoideum cDNA clone:dda56i14, 5' ...    44   0.36   2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    40   0.36   23
(BJ336872) Dictyostelium discoideum cDNA clone:dda55o12, 5' ...    44   0.36   2
(AP006852) Candida albicans genomic DNA, chromosome 7, compl...    46   0.37   22
(AE000787) Borrelia burgdorferi B31 plasmid lp38, complete s...    40   0.38   6
(BJ336788) Dictyostelium discoideum cDNA clone:dda55k04, 5' ...    44   0.38   2
(AE016823) Leptospira interrogans serovar Copenhageni str. F...    34   0.39   26
(AY673996) Gracilaria tenuistipitata var. liui chloroplast, ...    34   0.40   13
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       30   0.40   16
(CT030241) Mouse DNA sequence from clone RP23-377I11 on chro...    46   0.41   7
(CV693258) SJS_005_43.T7 SJS Schistosoma japonicum cDNA, mRN...    38   0.41   3
(AC102483) Mus musculus chromosome 1, clone RP24-450F12, com...    42   0.42   9
(AM285317) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   0.42   6
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   0.42   14
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.47   17
(AM285310) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   0.47   7
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.48   16
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.48   16
(DN872500) nad20d04.y1 Dog eye cornea. Unnormalized (nad) Ca...    44   0.49   2
(CU929996) Brassica rapa subsp. pekinensis clone KBrB120P19,...    34   0.49   9
(EF568108) Glossina pallidipes salivary gland hypertrophy vi...    34   0.52   13
(EG582555) AGENCOURT_88114321 NIH_ZGC_26 Danio rerio cDNA cl...    40   0.52   2
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet...    36   0.53   23
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    42   0.55   8
(DQ903071) Borrelia burgdorferi Arp (arp) gene, complete cds...    40   0.57   2
(CR940353) Theileria annulata genomic DNA chromosome 4.            36   0.59   23
(AC157758) Medicago truncatula clone mth2-62b13, complete se...    38   0.59   8
(CR727459) Tetraodon nigroviridis full-length cDNA.                48   0.59   2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    36   0.60   10
(AC189443) Brassica rapa subsp. pekinensis clone KBrB070J11,...    38   0.60   7
(AC179053) Strongylocentrotus purpuratus clone R3-4005H12, W...    36   0.61   2
(AC201117) Strongylocentrotus purpuratus clone R3-13N6, WORK...    36   0.61   2
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome.    36   0.62   19
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    32   0.62   12
(AC179560) Strongylocentrotus purpuratus clone R3-8D19, WORK...    42   0.66   5
(AC219214) Solanum lycopersicum chromosome 6 clone C06HBa015...    32   0.66   9
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.69   16
(AX344575) Sequence 26 from Patent WO0200932.                      34   0.70   7
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34...    40   0.71   9
(AJ938182) Staphylococcus aureus RF122 complete genome.            36   0.71   20
(U81289) Pisum sativum NAP1Ps mRNA, complete cds.                  36   0.77   2
(AG320733) Mus musculus molossinus DNA, clone:MSMg01-106L16....    36   0.78   2
(FC187443) CAAB7480.fwd CAAB Nematostella vectensis nemve_P1...    34   0.80   2
(ES543605) Kr_K06_03J09_attB1_seq K06 Euphausia superba cDNA...    36   0.81   2
(ES543568) Kr_K06_03D05_attB1_seq K06 Euphausia superba cDNA...    36   0.83   2
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ...    36   0.85   10
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    36   0.86   23
(CT573209) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   0.87   9
(EK014176) 1092955217682 Global-Ocean-Sampling_GS-31-01-01-1...    30   0.88   5
(CP000029) Staphylococcus epidermidis RP62A, complete genome.      38   0.90   19
(AC232868) Medicago truncatula clone mth2-79c11, WORKING DRA...    32   0.90   8
(AC178048) Strongylocentrotus purpuratus clone R3-1117F11, W...    42   0.91   8
(AL591119) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   0.92   6
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49...    34   0.93   11
(AC012496) Homo sapiens BAC clone RP11-341N18 from 2, comple...    42   0.96   4
(AC176328) Strongylocentrotus purpuratus clone R3-3054O20, W...    36   0.96   9
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ...    30   0.97   17
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    40   0.99   18
(EJ126856) 1092343397777 Global-Ocean-Sampling_GS-27-01-01-1...    42   1.0    3
(CR759888) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    34   1.0    9
(AL035475) Plasmodium falciparum MAL4P2.                           36   1.0    12
(CR388067) Zebrafish DNA sequence from clone CH211-169K21 in...    46   1.0    9
(AL590489) Human DNA sequence from clone RP11-412O4 on chrom...    38   1.1    7
(BI073751) kt34d10.y1 Strongyloides ratti L2 pAMP1 v1 Chiape...    42   1.1    2
(AE001434) Plasmodium falciparum 3D7 chromosome 2 section 71...    40   1.1    6
(BJ387982) Dictyostelium discoideum cDNA clone:dds7b10, 5' e...    38   1.1    2
(AL596328) Human DNA sequence *** SEQUENCING CANCELLED *** f...    34   1.1    14
(AC015838) Homo sapiens clone RP11-23I21, LOW-PASS SEQUENCE ...    36   1.1    7
(AX344572) Sequence 23 from Patent WO0200932.                      38   1.1    12
(L25637) Xenopus laevis HNF-3beta gene, complete cds.              48   1.1    1
(EU025665) Ischnocnema aff. ramagi ACC_JMB2007a isolate PF14...    48   1.1    1
(DQ503413) Danio rerio Jxc1-B mRNA, complete cds.                  48   1.1    1
(CU694451) Zebrafish DNA sequence from clone CH73-39J20 in l...    48   1.1    1
(CR942612) Xenopus tropicalis finished cDNA, clone TNeu122g07.     48   1.1    1
(CR388187) Zebrafish DNA sequence from clone DKEY-109G19 in ...    48   1.1    1
(BX649468) Zebrafish DNA sequence from clone CH211-152C2 in ...    48   1.1    1
(BC168785) Xenopus tropicalis family with sequence similarit...    48   1.1    1
(AL117203) Caenorhabditis elegans YAC Y48C3A.                      48   1.1    1
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    48   1.1    1
(AC140156) Didelphis virginiana clone LB3-20F15, WORKING DRA...    48   1.1    1
(CU463234) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.1    1
(AC233016) Monodelphis domestica clone VMRC18-318M17, WORKIN...    48   1.1    1
(AC232685) Choloepus hoffmanni clone CH281-606N23, WORKING D...    48   1.1    1
(AC231477) Monodelphis domestica clone VMRC18-889P7, WORKING...    48   1.1    1
(AC226305) Monodelphis domestica clone VMRC18-791B7, WORKING...    48   1.1    1
(AC222935) Bos taurus clone CH240-434D19, WORKING DRAFT SEQU...    48   1.1    1
(AC218860) Macaca mulatta clone CH250-33J14, WORKING DRAFT S...    48   1.1    1
(AC189459) Brassica rapa subsp. pekinensis clone KBrB073K15,...    48   1.1    1
(AC180483) Strongylocentrotus purpuratus clone R3-3100O21, W...    48   1.1    1
(AC178527) Strongylocentrotus purpuratus clone R3-113H21, WO...    48   1.1    1
(AC177452) Strongylocentrotus purpuratus clone R3-5M05, WORK...    48   1.1    1
(AC174121) Strongylocentrotus purpuratus clone R3-3056B1, WO...    48   1.1    1
(CR678889) Tetraodon nigroviridis full-length cDNA.                48   1.1    1
(CR671521) Tetraodon nigroviridis full-length cDNA.                48   1.1    1
(FH529975) CHO_OF4729xo24f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   1.1    1
(ER626963) 1093018272532 Global-Ocean-Sampling_GS-36-01-01-2...    48   1.1    1
(ER550959) 1093016230270 Global-Ocean-Sampling_GS-35-01-01-1...    48   1.1    1
(ER291133) 1092343603935 Global-Ocean-Sampling_GS-34-01-01-1...    48   1.1    1
(EK282597) 1095462300654 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.1    1
(EK049580) 1092959678862 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.1    1
(EJ710337) 1092956072425 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.1    1
(EJ677454) 1092955096961 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.1    1
(EJ292218) 1095386006466 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.1    1
(EI015882) bb43d10.r Dekkera bruxellensis Random Genomic Lib...    48   1.1    1
(ED397224) AUAC-aba52a11.g1 Ascaris suum whole genome shotgu...    48   1.1    1
(ED303052) AUAC-aak72f01.b1 Ascaris suum whole genome shotgu...    48   1.1    1
(ED239809) AUAC-aae04f10.g1 Ascaris suum whole genome shotgu...    48   1.1    1
(DE229340) Trifolium pratense DNA, clone:RCG22453.                 48   1.1    1
(CL580373) OB__Ba0040F04.r OB__Ba Oryza brachyantha genomic ...    48   1.1    1
(AG377369) Mus musculus molossinus DNA, clone:MSMg01-185F15....    48   1.1    1
(ES369909) 5-CP713-008A11 Normalized cDNA library of Cryphon...    48   1.1    1
(ES367343) CP713-008A11 Normalized cDNA library of Cryphonec...    48   1.1    1
(ES269501) 69JKME5D_T3_040_G05_01APR2005_035 69JKME5D Brassi...    48   1.1    1
(ES266722) 69JKME5D_T3_006_G11_27MAR2005_083 69JKME5D Brassi...    48   1.1    1
(ES266460) 69JKME5D_T3_003_F03_27MAR2005_021 69JKME5D Brassi...    48   1.1    1
(ES265937) 44JK5DM_UP_007_D09_26MAY2004_073 44JK5DM Brassica...    48   1.1    1
(EL858555) CBXT14615.b1 NICHD_XGC_trop_25 Xenopus (Silurana)...    48   1.1    1
(EL673844) CBST5667.fwd NICHD_XGC_tropThy1 Xenopus (Silurana...    48   1.1    1
(EL647106) AGENCOURT_97514677 NCI_CGAP_ZKid1 Danio rerio cDN...    48   1.1    1
(EH708770) CCIS8070.b1_K01.ab1 CCI(LMS) chicory Cichorium in...    48   1.1    1
(EH706912) CCIS6334.b1_L23.ab1 CCI(LMS) chicory Cichorium in...    48   1.1    1
(EH706300) CCIS5772.b1_G03.ab1 CCI(LMS) chicory Cichorium in...    48   1.1    1
(EH706006) CCIS5154.b1_D17.ab1 CCI(LMS) chicory Cichorium in...    48   1.1    1
(EH701859) CCIS13913.b1_A23.ab1 CCI(LMS) chicory Cichorium i...    48   1.1    1
(EH700506) CCIS12672.b1_P24.ab1 CCI(LMS) chicory Cichorium i...    48   1.1    1
(EH698725) CCIS10942.b1_L23.ab1 CCI(LMS) chicory Cichorium i...    48   1.1    1
(EH698212) CCIS10030.b1_K11.ab1 CCI(LMS) chicory Cichorium i...    48   1.1    1
(EH695034) CCIM6915.b1_E01.ab1 CCI(LMS) chicory Cichorium in...    48   1.1    1
(EH035064) HA_MX0_78c06_SP6 Lobster Multiple Tissues, Normal...    48   1.1    1
(EE992950) Le_emtis_212O14_M13R29 Little skate (Leucoraja er...    48   1.1    1
(EE992470) Le_emtis_408H08_M13R29 Little skate (Leucoraja er...    48   1.1    1
(EE991931) Le_emtis_403G03_M13R29 Little skate (Leucoraja er...    48   1.1    1
(EE991853) Le_emtis_402E06_M13R29 Little skate (Leucoraja er...    48   1.1    1
(EE991770) Le_emtis_401A09_M13R29 Little skate (Leucoraja er...    48   1.1    1
(EE990805) Le_emtis_301A06_M13R29 Little skate (Leucoraja er...    48   1.1    1
(EE989832) Le_emtis_109F12_M13R29 Little skate (Leucoraja er...    48   1.1    1
(EE466842) BNSCS3CT_UP_025_D02_12JAN2005_010 Brassica napus ...    48   1.1    1
(EE422084) 59ACAB6_UP_029_H07_27JUL2004_049 Brassica napus 5...    48   1.1    1
(EE417314) 58ACPE48_UP_004_B07_20SEP2004_061 Brassica napus ...    48   1.1    1
(EE193046) CC-L01_018_A12 Coffea young leaves Coffea canepho...    48   1.1    1
(EB472678) AGENCOURT_73490596 NICHD_XGC_sple_PHA Xenopus lae...    48   1.1    1
(EB358394) MCCN20-F-099043-501 Normalized MCC Neurons Aplysi...    48   1.1    1
(EB334757) CNSN01-F-141718-501 Normalized CNS library (juven...    48   1.1    1
(EB269940) MCC014-F-028414-501 Non-Normalized MCC Neurons 1 ...    48   1.1    1
(EB189103) PEG001-C-008720-501 Non-Normalized Pedal-Pleural ...    48   1.1    1
(DW541479) EST_ssal_rgb2_5898 rgb2 Salmo salar cDNA clone ss...    48   1.1    1
(DT353826) JGI_CABU561.fwd CABU Pimephales promelas ovary 7-...    48   1.1    1
(DT282484) JGI_CAAV10418.fwd CAAV Pimephales promelas testis...    48   1.1    1
(DT278513) JGI_CAAV8112.fwd CAAV Pimephales promelas testis ...    48   1.1    1
(DT274289) JGI_CAAV5683.fwd CAAV Pimephales promelas testis ...    48   1.1    1
(DT272587) JGI_CAAV4712.fwd CAAV Pimephales promelas testis ...    48   1.1    1
(DR877830) JGI_CABI1375.fwd NIH_XGC_tropOvi1 Xenopus (Silura...    48   1.1    1
(DR026851) Osmo00984 F. cylindrus osmotic stress library Fra...    48   1.1    1
(DN697675) CLJ13-B02.x1d-t SHGC-CLJ Gasterosteus aculeatus c...    48   1.1    1
(DN088676) JGI_CABE2419.fwd NIH_XGC_tropOva1 Xenopus (Silura...    48   1.1    1
(DC152968) Xenopus (Silurana) tropicalis NBRP cDNA clone: rs...    48   1.1    1
(DC125757) Xenopus laevis NBRP cDNA clone:xl309c02, 5' end.        48   1.1    1
(DB586454) Halocynthia roretzi cDNA clone:ma326e08, 5' end.        48   1.1    1
(AU061571) Dictyostelium discoideum slug cDNA, clone SLE668.       48   1.1    1
(AU034262) Dictyostelium discoideum slug cDNA, clone SLC342.       48   1.1    1
(AM906245) Solanum tuberosum EST, clone 10F5.                      48   1.1    1
(CX930552) JGI_CAAO1286.fwd NIH_XGC_tropTe5 Xenopus (Siluran...    48   1.1    1
(CX487117) JGI_XZG29491.fwd NIH_XGC_tropGas7 Xenopus (Silura...    48   1.1    1
(CX456951) JGI_XZG53950.rev NIH_XGC_tropGas7 Xenopus (Silura...    48   1.1    1
(CX453806) JGI_XZG55046.fwd NIH_XGC_tropGas7 Xenopus (Silura...    48   1.1    1
(CX453442) JGI_XZG54844.fwd NIH_XGC_tropGas7 Xenopus (Silura...    48   1.1    1
(CX439244) JGI_XZG7098.rev NIH_XGC_tropGas7 Xenopus (Siluran...    48   1.1    1
(CX397011) JGI_XZT56850.fwd NIH_XGC_tropTad5 Xenopus (Silura...    48   1.1    1
(CX315292) JGI_XZT65540.fwd NIH_XGC_tropTad5 Xenopus (Silura...    48   1.1    1
(CX231669) MBM09942 Mus Musculus hematopoietic BM-HPC5 cDNA ...    48   1.1    1
(CV115627) AGENCOURT_31536448 NIH_MGC_269 Rattus norvegicus ...    48   1.1    1
(CU715139) Phaeodactylum tricornutum mRNA 5-prime sequence f...    48   1.1    1
(CT776846) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   1.1    1
(CT768522) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   1.1    1
(CT754689) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   1.1    1
(CT750898) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   1.1    1
(CT740257) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   1.1    1
(CT739189) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   1.1    1
(CR579388) Xenopus tropicalis EST, clone THdA053d02 5'.            48   1.1    1
(AL964943) Xenopus tropicalis EST, clone TGas099m03 5'.            48   1.1    1
(AL912367) Danio rerio EST sequence, clone 045-G11-2.              48   1.1    1
(AL897001) Xenopus tropicalis EST, clone TEgg085i16 5'.            48   1.1    1
(AL890190) Xenopus tropicalis EST, clone TEgg089n16 5'.            48   1.1    1
(CK251461) EST735098 potato callus cDNA library, normalized ...    48   1.1    1
(CK250340) EST733977 potato callus cDNA library, normalized ...    48   1.1    1
(CK245316) EST728953 potato callus cDNA library, normalized ...    48   1.1    1
(CK243913) EST727550 potato callus cDNA library, normalized ...    48   1.1    1
(CK243899) EST727536 potato callus cDNA library, normalized ...    48   1.1    1
(CK243898) EST727535 potato callus cDNA library, normalized ...    48   1.1    1
(CF785426) AGENCOURT_15917640 XtSt10-30 Xenopus (Silurana) t...    48   1.1    1
(CF785425) AGENCOURT_15916285 XtSt10-30 Xenopus (Silurana) t...    48   1.1    1
(BU906470) AGENCOURT_10465131 NICHD_XGC_Emb1 Xenopus laevis ...    48   1.1    1
(BQ899934) AGENCOURT_8750770 NIH_MGC_130 Mus musculus cDNA c...    48   1.1    1
(BM163866) EST566389 PyBS Plasmodium yoelii yoelii cDNA clon...    48   1.1    1
(BJ425070) Dictyostelium discoideum cDNA clone:ddv54d15, 5' ...    48   1.1    1
(BJ074793) Xenopus laevis cDNA clone:XL071h10, 5' end, singl...    48   1.1    1
(BG515759) dc95d08.y1 NICHD_XGC_OO1 Xenopus laevis cDNA clon...    48   1.1    1
(AA890470) aj92g06.s1 Soares_parathyroid_tumor_NbHPA Homo sa...    48   1.1    1
(AA541647) ni99g05.s1 NCI_CGAP_Pr21 Homo sapiens cDNA clone ...    48   1.1    1
(BG038485) dd94b05.x1 Wellcome CRC pcDNAI egg Xenopus laevis...    48   1.1    1
(BF707901) A518_LE Aplysia metacerebral cell cDNA library Ap...    48   1.1    1
(GH151482) G994P165FH2.T0 Neurospora crassa cDNA - 1 hour Ni...    48   1.1    1
(GH151381) G994P165RH2.T0 Neurospora crassa cDNA - 1 hour Ni...    48   1.1    1
(GH141631) G994P140FI21.T0 Neurospora crassa cDNA - 1 hour N...    48   1.1    1
(GH141383) G994P140RI21.T0 Neurospora crassa cDNA - 1 hour N...    48   1.1    1
(GD184154) Ferret_013_G24 Ferret library from spleen, liver,...    48   1.1    1
(FF080109) G1045P312FE22.T0 Aplysia californica Pooled Norma...    48   1.1    1
(FE838024) CCAG47543.b1 CCAG Petrolisthes cinctipes heart, g...    48   1.1    1
(FE736459) SB06022A1B11.f1 Normalized subtracted Keck-Tagu L...    48   1.1    1
(FE660165) HA_MX2_98c08_SP6 Lobster Multiple Tissues, Normal...    48   1.1    1
(FC572630) CAWH763.fwd CAWH Lottia gigantea from foot (H) Lo...    48   1.1    1
(AW794938) RC6-UM0015-210200-021-B11 UM0015 Homo sapiens cDN...    48   1.1    1
(FC234107) CAGG5373.fwd CAGG Nematostella vectensis Nemve Ea...    48   1.1    1
(FC232688) CAGG4542.fwd CAGG Nematostella vectensis Nemve Ea...    48   1.1    1
(FC209772) CAGF11927.rev CAGF Nematostella vectensis Nemve E...    48   1.1    1
(FC202410) CAAD8487.fwd CAAD Nematostella vectensis nemve_P1...    48   1.1    1
(FC202409) CAAD8487.rev CAAD Nematostella vectensis nemve_P1...    48   1.1    1
(FC161387) 1106908673681 BABEVPN-C-01-1-7KB Papio anubis cDN...    48   1.1    1
(EY405999) pOP-EAP01816_EST_C_1_pBSK_SK EA (Oil Palm Embryoi...    48   1.1    1
(EY307148) CAWX20307.rev CAWX Helobdella robusta Primary Ear...    48   1.1    1
(EV098791) 0178221 Brassica napus Leaf library Brassica napu...    48   1.1    1
(EV094689) 0192690 Brassica napus Apical meristem Brassica n...    48   1.1    1
(EV092878) 0190397 Brassica napus Apical meristem Brassica n...    48   1.1    1
(AC159632) Mus musculus BAC clone RP24-161A16 from chromosom...    46   1.1    8
(AJ560798) Ostrinia furnacalis mitochondrial 16S rRNA gene (...    36   1.1    4
(AC183101) Pan troglodytes BAC clone CH251-716N19 from chrom...    36   1.2    8
(AF469003) Jatropha curcas curcin precursor, gene, complete ...    34   1.2    4
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            34   1.3    19
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    30   1.3    18
(AC002509) Homo sapiens chromosome Y, clone 2Y, complete seq...    40   1.3    9
(AC100936) Mus musculus clone RP23-72J14, LOW-PASS SEQUENCE ...    34   1.3    7
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    38   1.3    20
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   1.3    9
(EJ910191) 1093018534063 Global-Ocean-Sampling_GS-30-02-01-1...    34   1.3    3
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    36   1.4    10
(BJ393918) Dictyostelium discoideum cDNA clone:dds33j05, 5' ...    40   1.4    2
(CP000849) Rickettsia bellii OSU 85-389, complete genome.          38   1.4    21
(AY160106) Dictyostelium discoideum nucleotide exchange fact...    32   1.5    6
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    34   1.5    22
(AF288092) Naegleria gruberi mitochondrial DNA, complete gen...    30   1.5    9
(FC816585) Sr_pAMT7_06i14_T7 S. ratti mixed stage pAMP Stron...    42   1.5    2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   1.5    13
(AC202303) Medicago truncatula clone mth2-155j9, complete se...    34   1.5    8
(AF214118) Dictyostelium discoideum ubiquitin-like fusion pr...    34   1.5    3
(AC010350) Homo sapiens chromosome 5 clone CTD-2020P22, comp...    46   1.6    4
(AC002488) Homo sapiens chromosome X, clone 36X, complete se...    40   1.6    8
(AP010264) Solanum lycopersicum DNA, chromosome 8, clone: C0...    38   1.6    9
(CU914637) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.6    12
(AM942759) Proteus mirabilis strain HI4320, complete genome.       38   1.6    22
(CU087252) Equus caballus GSS, BAC clone CH241-184C13, SP6 e...    46   1.6    2
(CU459152) Zebrafish DNA sequence from clone CH73-181M17 in ...    38   1.6    6
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   1.7    15
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    36   1.7    8
(ER374002) 1093030504174 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.7    2
(AC124951) Medicago truncatula chromosome 6 clone mth2-7p23,...    36   1.7    9
(DE262414) Oryzias latipes DNA, clone: ola1-151B19.F, genomi...    40   1.7    2
(AC136232) Rattus norvegicus clone CH230-467B13, *** SEQUENC...    38   1.8    2
(AC025406) Homo sapiens chromosome 1 clone RP11-301O24 map 1...    34   1.8    11
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   1.8    18
(EY305111) CAWX19172.fwd CAWX Helobdella robusta Primary Ear...    46   1.8    2
(EJ240280) 1095328037356 Global-Ocean-Sampling_GS-27-01-01-1...    42   1.8    2
(AC232319) Solanum tuberosum chromosome 11 clone RH097I18, *...    36   1.8    11
(BX545857) Campylobacter jejuni.                                   32   1.8    9
(DY893266) CeleSEQ12556 Cunninghamella elegans pBluescript (...    44   1.9    2
(AC114265) Dictyostelium discoideum chromosome 2 map 4520461...    32   1.9    6
(EY301059) CAWX15368.fwd CAWX Helobdella robusta Primary Ear...    46   1.9    2
(AC133176) Mus musculus BAC clone RP24-111D1 from chromosome...    36   1.9    11
(AL035476) Plasmodium falciparum MAL4P3.                           32   1.9    17
(ER750056) SB_BBc152-B01.R SB_BBc Sorghum bicolor genomic 3'...    42   1.9    2
(ER365138) 1093018983074 Global-Ocean-Sampling_GS-34-01-01-1...    46   2.0    2
(AC012289) Homo sapiens chromosome 18, clone RP11-7E6, compl...    36   2.0    8
(AY077835) Goatpox virus Pellor, complete genome.                  36   2.0    11
(AY077836) Goatpox virus G20-LKV, complete genome.                 36   2.0    11
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    38   2.1    13
(AC201242) Strongylocentrotus purpuratus clone R3-15K6, WORK...    42   2.1    9
(CX157272) TfEST098A01 Tf30924 cDNA Library Tritrichomonas f...    38   2.1    3
(AX344551) Sequence 2 from Patent WO0200932.                       36   2.2    15
(EK517773) 1095515506258 Global-Ocean-Sampling_GS-32-01-01-1...    30   2.2    4
(AL670882) Mouse DNA sequence from clone RP23-286G19 on chro...    38   2.2    7
(AC124763) Mus musculus BAC clone RP23-158P17 from 12, compl...    36   2.2    2
(AC007356) Drosophila melanogaster, chromosome 2R, region 49...    36   2.2    2
(CV659208) tak38d01.y1 Hydra EST UCI 6 Hydra magnipapillata ...    42   2.2    2
(AC007476) Drosophila melanogaster, chromosome 2R, region 49...    36   2.2    2
(CU694645) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.3    7
(AF231701) Carabus cristoforii NADH dehydrogenase subunit 5 ...    32   2.3    3
(AC017911) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    36   2.3    2
(AB092705) Carabus cristoforii cristoforii ND5 gene for NADH...    32   2.3    3
(AP010439) Lotus japonicus genomic DNA, chromosome 5, clone:...    38   2.4    10
(CU928192) S.lycopersicum DNA sequence from clone LE_HBa-142...    34   2.4    8
(DN244687) ACAD-aaa31n07.g1 Hydra_EST_UCI-8 Hydra magnipapil...    42   2.4    2
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    34   2.5    13
(AC130692) Homo sapiens chromosome 17 clone RP13-301H17 map ...    38   2.5    5
(FC857213) CAMHEP420b03 CAMHE Biomphalaria glabrata cDNA clo...    38   2.5    3
(DE238477) Trifolium pratense DNA, clone:RCG35959.                 40   2.6    2
(AC225609) Callithrix jacchus BAC clone CH259-161K20 from ch...    36   2.6    10
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    36   2.7    22
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    42   2.7    12
(EA024115) Sequence 952 from patent US 7135558.                    36   2.7    2
(CQ590798) Sequence 18556 from Patent WO0171042.                   36   2.7    2
(CQ591086) Sequence 18844 from Patent WO0171042.                   36   2.7    2
(AX346604) Sequence 1675 from Patent WO0200928.                    32   2.7    7
(DQ102703) Coreana raphaelis mitochondrion, complete genome.       32   2.8    6
(EA024116) Sequence 953 from patent US 7135558.                    36   2.8    2
(CQ590799) Sequence 18557 from Patent WO0171042.                   36   2.8    2
(AC210350) Solanum lycopersicum chromosome 7 clone C07HBa003...    38   2.8    10
(AC180501) Strongylocentrotus purpuratus clone R3-3099I20, W...    36   2.9    10
(BQ050113) AGENCOURT_7048721 NIH_MGC_85 Homo sapiens cDNA cl...    34   2.9    2
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    34   2.9    25
(AY232267) Dictyostelium discoideum putative protein Roco5 (...    32   3.0    5
(EX884971) CcLXGa41c17n1 WeyGill Cyprinus carpio cDNA clone ...    34   3.0    2
(CZ534322) SRAA-aac90f01.b1 Strongyloides ratti whole genome...    32   3.0    2
(EH582468) FDR306-P00012-DEPE-F_D11 FDR306 Danio rerio cDNA ...    34   3.0    2
(CO802329) AGENCOURT_30342148 NIH_ZGC_14 Danio rerio cDNA cl...    34   3.0    2
(CA975592) AGENCOURT_11067730 NCI_CGAP_ZKid1 Danio rerio cDN...    34   3.0    2
(DT058064) AGENCOURT_55705274 NIH_ZGC_21 Danio rerio cDNA cl...    34   3.0    2
(DV586525) AGENCOURT_61891469 NIH_ZGC_14 Danio rerio cDNA cl...    34   3.0    2
(AA439858) LD14537.5prime LD Drosophila melanogaster embryo ...    36   3.0    2
(AM439876) Vitis vinifera contig VV78X229579.18, whole genom...    30   3.0    8
(CK691085) ZF101-P00055-DEPE-F2_B08 GISZF001_ra Danio rerio ...    34   3.0    2
(CO806015) AGENCOURT_30343204 NIH_ZGC_14 Danio rerio cDNA cl...    34   3.0    2
(AA263275) LD06365.5prime LD Drosophila melanogaster embryo ...    36   3.0    2
(DC213072) Plasmodium berghei strain ANKA cDNA clone:MG01461...    36   3.0    2

>(AU284936) Dictyostelium discoideum gamete cDNA clone:FC-BQ14, 5'
           end single read.
          Length = 768

 Score = 1522 bits (768), Expect = 0.0
 Identities = 768/768 (100%)
 Strand = Plus / Plus


Query: 1   gaacaattaaatcaatcttttgatgaagttttaaaagattattataaaaataaagatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaattaaatcaatcttttgatgaagttttaaaagattattataaaaataaagatata 60


Query: 61  tttgtattaaagaaatgtaatatgttaggtacagttgatcaaagtcataaaaaagaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttgtattaaagaaatgtaatatgttaggtacagttgatcaaagtcataaaaaagaattt 120


Query: 121 aaagattttgttaatcaaactttggatgaaatgtcaatgtttggatttacagcacaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagattttgttaatcaaactttggatgaaatgtcaatgtttggatttacagcacaagat 180


Query: 181 ttatgggaaggcaatgcagatttaaaattttgggttgataaaattaaacataaaattgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatgggaaggcaatgcagatttaaaattttgggttgataaaattaaacataaaattgta 240


Query: 241 ttaaataatgatgaaagatttgttgtagaatttgtattacctgaaattttaaatgaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaaataatgatgaaagatttgttgtagaatttgtattacctgaaattttaaatgaaaat 300


Query: 301 aatagtgtttataaacgtatttatcgtgtaccaaatgatatatcaattaaagatattaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatagtgtttataaacgtatttatcgtgtaccaaatgatatatcaattaaagatattaca 360


Query: 361 aattttttatgtattaaaactcaaaccattcaagattcatcgatttatacattatcaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattttttatgtattaaaactcaaaccattcaagattcatcgatttatacattatcaact 420


Query: 421 attaaaggtaaagaattggatggtgatgattgtttagcagattatggattaggttcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attaaaggtaaagaattggatggtgatgattgtttagcagattatggattaggttcattt 480


Query: 481 tttgataattggcaattggtgctagttgaacgtggtaaaactagaagagctggtattttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttgataattggcaattggtgctagttgaacgtggtaaaactagaagagctggtattttc 540


Query: 541 aatttggaggtccattttccagataatccagaatatagagggtagatatcatcgtgtatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatttggaggtccattttccagataatccagaatatagagggtagatatcatcgtgtatt 600


Query: 601 ggaattcggatgggttatatgacctgcttcaaaaccttgttaaatatattgggtgaacca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggaattcggatgggttatatgacctgcttcaaaaccttgttaaatatattgggtgaacca 660


Query: 661 atgggatatccgctaaaatcctcatctataattgtataaggattaagatttaattttaaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgggatatccgctaaaatcctcatctataattgtataaggattaagatttaattttaaa 720


Query: 721 attccaaattcccaaattctttccacccacttacctttccatcattca 768
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 attccaaattcccaaattctttccacccacttacctttccatcattca 768

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,497,627,529
Number of extensions: 172634428
Number of successful extensions: 17147372
Number of sequences better than 10.0: 1500
Length of query: 1752
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1728
Effective length of database: 96,409,374,237
Effective search space: 166595398681536
Effective search space used: 166595398681536
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.20
Homology vs Protein 
Query= Contig-U16020-1 (Contig-U16020-1Q) /CSM_Contig/Contig-U16020-1Q.Seq.d
         (1752 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114263_4(AC114263|pid:none) Dictyostelium discoideum chromosom...    59   7e-07
CP000962_1479(CP000962|pid:none) Clostridium botulinum A3 str. L...    39   0.79
CP000825_720(CP000825|pid:none) Prochlorococcus marinus str. MIT...    38   1.0
CP001107_2669(CP001107|pid:none) Eubacterium rectale ATCC 33656,...    37   2.3
AE017125_81(AE017125|pid:none) Helicobacter hepaticus ATCC 51449...    35   6.7
AE017244_620(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, c...    35   8.7

>AC114263_4(AC114263|pid:none) Dictyostelium discoideum chromosome 2
           map 215673-367476 strain AX4, complete sequence.
          Length = 869

 Score = 58.5 bits (140), Expect = 7e-07
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
 Frame = +1

Query: 100 QSHKKEFKDFVNQTLDEMSMFGFTAQDLWEGNADLKFWVDKIKHKIVLNNDER----FVV 267
           Q  + +  + + Q L E  +   T Q +W G+ DL   + +  +  +LN  E      ++
Sbjct: 87  QKWESDTPEDIYQLLAEQKL---TEQMIWCGHPDLFPIIHQ--YSDILNAKENPNGSNIL 141

Query: 268 EFVLPEILNENNSVYKRIYRVPNDISIKDITNFLCIKTQTIQDSSIYTLSTIKGKELDGD 447
              LP    E   V K+ Y++   +++    N +C K Q +++   Y LST+ G  L+ +
Sbjct: 142 SINLPASSGEFGDVKKKSYKIAKKLTVAQTINLIC-KKQNVKEPRKYWLSTLYGCILNDE 200

Query: 448 DCLADYGLGSFFDNWQLVLV 507
             L+ YG G+FFD+W+L LV
Sbjct: 201 MLLSSYGFGTFFDSWELSLV 220

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,417,668,561
Number of extensions: 43979012
Number of successful extensions: 99577
Number of sequences better than 10.0: 6
Number of HSP's gapped: 99519
Number of HSP's successfully gapped: 6
Length of query: 584
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 450
Effective length of database: 617,481,958
Effective search space: 277866881100
Effective search space used: 277866881100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.89  gvh: 0.49  alm: 0.52  top: 0.47  tms: 0.00  mit: 0.45  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U16020-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0