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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03215-1
Contig ID Contig-U03215-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Contig-U03215-1Q.Seq.d
AATCCACAAACTTTTGGGTGGTAGATTTGCTGCAATTGTTGCATGTATTT
TTGGTTTATTATTATTATCATTTGTAATTGAAAGTTTTGCAAGATTAACT
CAAGCAACGAGTCATCAAAGACCAATATTAAATTTAGTATCATTAGTTGA
AGCACAAAAGAAAGAAAGAGATTCAGCAGGCTAGATTAATTCAATTGGTT
TGGAGAAGATGGAGATGGCAATTTAGTATGAGTATATCACAAAATAGATC
AATGTTTAATAGTAAGGAAGCATTGTTTTGTGTGAAATATATCGAATATG
CTAAAACTTTAAGTAGAATGAGAAGAGAACGTAGAGCAATTCAATCTCAA
TGTCAAGATAGTCAACCATCACAACAAAGTTCAATCATTGAAGAGATTAA
ATCAACTCTATCCAATTGTGATGTTACAACGATAACAAAAAGTGATGACA
ATGATAATAGTAGTATTAAAATCATTGAATCTTTACAACTTAAAATTAAA
TCACTTGAGGATAATCAATCAATTATGTTGGCTCAATTGAATCAATTAAT
TCAAATGCAACAATTCCAAATTCAAATTCAACAAAATCAACATCAACAAC
AACAGGTTCATTTACAACAACAACAACAACAACAACATCAACAACATGTT
TTTAATAATGAAAATCCACAAGCCCAATCATCTCCTCAACAACAACCACA
ACTTCATGTTTTTAATAATGAAAATCAATTCACTTAAATTATTATTAAAA
AAAAAAAAAAAATCACAAAGAGATATCAATATTTGAAAATTNTCTNTNTT
ATATATATAATAAARAAAAATATTATTACAAATCAATACTCGATTGGTTT
TATGTAGATTTAATACAA
Gap no gap
Contig length 868
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3759270
End point 3758402
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U03215
List of clone(s) 

est1=CFF339Z,1,742
est2=SFH294Z,115,548
est3=SSA219E,211,869
Translated Amino Acid sequence 
stnfwvvdllqllhvflvyyyyhl*lkvlqd*lkqrvikdqy*i*yh*LKHKRKKEIQQA
RLIQLVWRRWRWQFSMSISQNRSMFNSKEALFCVKYIEYAKTLSRMRRERRAIQSQCQDS
QPSQQSSIIEEIKSTLSNCDVTTITKSDDNDNSSIKIIESLQLKIKSLEDNQSIMLAQLN
QLIQMQQFQIQIQQNQHQQQQVHLQQQQQQQHQQHVFNNENPQAQSSPQQQPQLHVFNNE
NQFT*iiikkkkkitkryqylkixxxiyiixkniitnqysigfm*i*y
Translated Amino Acid sequence (All Frames) 
Frame A:
npqtfgw*iccnccmyfwfiiiiicn*kfckinssnessktnikfsiis*stkerkrfsr
ld*fnwfgedgdgnlv*vyhkidqclivrkhcfv*nisnmlkl*ve*eenveqfnlnvki
vnhhnkvqslkrlnqlypivmlqr*qkvmtmiivvlkslnlynlklnhlriinqlcwln*
in*fkcnnskfkfnkininnnrfiynnnnnnninnmflimkihkpnhllnnnhnfmflim
kinslklllkkkkksqrdini*kxsxlyi**xkillqintrlvlcrfnt


Frame B:
ihkllggrfaaivacifgllllsfviesfarltqatshqrpilnlvslveaqkkerdsag
*insiglekmemai*yeyitk*inv***gsivlceiyric*nfk*nekrt*snsismsr*
stittkfnh*rd*insiql*cyndnkk**q****y*nh*iftt*n*it*g*sinyvgsie
sinsnatipnsnstkststttgsfttttttttsttcf***kstspiisstttttscf***
ksihlnyy*kkkknhkeisifenxlxyiynkxkyyyksildwfyvdliq


Frame C:
stnfwvvdllqllhvflvyyyyhl*lkvlqd*lkqrvikdqy*i*yh*LKHKRKKEIQQA
RLIQLVWRRWRWQFSMSISQNRSMFNSKEALFCVKYIEYAKTLSRMRRERRAIQSQCQDS
QPSQQSSIIEEIKSTLSNCDVTTITKSDDNDNSSIKIIESLQLKIKSLEDNQSIMLAQLN
QLIQMQQFQIQIQQNQHQQQQVHLQQQQQQQHQQHVFNNENPQAQSSPQQQPQLHVFNNE
NQFT*iiikkkkkitkryqylkixxxiyiixkniitnqysigfm*i*y
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03215-1 (Contig-U03215-1Q)
/CSM_Contig/Contig-U03215-1Q.Seq.d
         (868 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Conti...  1079  0.0
Contig-U12139-1 (Contig-U12139-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11105-1 (Contig-U11105-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13867-1 (Contig-U13867-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U10937-1 (Contig-U10937-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13429-1 (Contig-U13429-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U11304-1 (Contig-U11304-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U11135-1 (Contig-U11135-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U05292-1 (Contig-U05292-1Q) /CSM_Contig/Conti...    38  0.015

>Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Contig-U03215-1Q.Seq.d
          Length = 868

 Score = 1079 bits (544), Expect = 0.0
 Identities = 544/544 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatccacaaacttttgggtggtagatttgctgcaattgttgcatgtatttttggtttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aatccacaaacttttgggtggtagatttgctgcaattgttgcatgtatttttggtttatt 60

                                                                       
Query: 61  attattatcatttgtaattgaaagttttgcaagattaactcaagcaacgagtcatcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attattatcatttgtaattgaaagttttgcaagattaactcaagcaacgagtcatcaaag 120

                                                                       
Query: 121 accaatattaaatttagtatcattagttgaagcacaaaagaaagaaagagattcagcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accaatattaaatttagtatcattagttgaagcacaaaagaaagaaagagattcagcagg 180

                                                                       
Query: 181 ctagattaattcaattggtttggagaagatggagatggcaatttagtatgagtatatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctagattaattcaattggtttggagaagatggagatggcaatttagtatgagtatatcac 240

                                                                       
Query: 241 aaaatagatcaatgtttaatagtaaggaagcattgttttgtgtgaaatatatcgaatatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaatagatcaatgtttaatagtaaggaagcattgttttgtgtgaaatatatcgaatatg 300

                                                                       
Query: 301 ctaaaactttaagtagaatgagaagagaacgtagagcaattcaatctcaatgtcaagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctaaaactttaagtagaatgagaagagaacgtagagcaattcaatctcaatgtcaagata 360

                                                                       
Query: 361 gtcaaccatcacaacaaagttcaatcattgaagagattaaatcaactctatccaattgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcaaccatcacaacaaagttcaatcattgaagagattaaatcaactctatccaattgtg 420

                                                                       
Query: 421 atgttacaacgataacaaaaagtgatgacaatgataatagtagtattaaaatcattgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgttacaacgataacaaaaagtgatgacaatgataatagtagtattaaaatcattgaat 480

                                                                       
Query: 481 ctttacaacttaaaattaaatcacttgaggataatcaatcaattatgttggctcaattga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctttacaacttaaaattaaatcacttgaggataatcaatcaattatgttggctcaattga 540

               
Query: 541 atca 544
           ||||
Sbjct: 541 atca 544


 Score =  198 bits (100), Expect = 6e-51
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 647 tgtttttaataatgaaaatccacaagcccaatcatctcctcaacaacaaccacaacttca 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgtttttaataatgaaaatccacaagcccaatcatctcctcaacaacaaccacaacttca 706

                                                   
Query: 707 tgtttttaataatgaaaatcaattcacttaaattattatt 746
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgtttttaataatgaaaatcaattcacttaaattattatt 746


 Score =  188 bits (95), Expect = 6e-48
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                       
Query: 763 tcacaaagagatatcaatatttgaaaattntctntnttatatatataataaaraaaaata 822
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tcacaaagagatatcaatatttgaaaattntctntnttatatatataataaaraaaaata 822

                                                         
Query: 823 ttattacaaatcaatactcgattggttttatgtagatttaatacaa 868
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ttattacaaatcaatactcgattggttttatgtagatttaatacaa 868


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 687 caacaacaaccacaacttcatgtttttaataatgaaaatc 726
           ||||||||||  ||||  ||||||||||||||||||||||
Sbjct: 627 caacaacaacatcaacaacatgtttttaataatgaaaatc 666


>Contig-U12139-1 (Contig-U12139-1Q) /CSM_Contig/Contig-U12139-1Q.Seq.d
          Length = 1791

 Score = 42.2 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  ttattattattatcatttgta 76
           |||||||||||||||||||||
Sbjct: 290 ttattattattatcatttgta 270


>Contig-U11105-1 (Contig-U11105-1Q) /CSM_Contig/Contig-U11105-1Q.Seq.d
          Length = 2892

 Score = 42.2 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 48  tttttggtttattattattat 68
           |||||||||||||||||||||
Sbjct: 324 tttttggtttattattattat 304


 Score = 30.3 bits (15), Expect = 3.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 465  attaaaatcattgaa 479
            |||||||||||||||
Sbjct: 1257 attaaaatcattgaa 1271


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.38    0.711     1.31 

Gapped
Lambda     K      H
    1.38    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,885
Number of Sequences: 6905
Number of extensions: 29885
Number of successful extensions: 10398
Number of sequences better than 10.0: 711
length of query: 868
length of database: 5,674,871
effective HSP length: 16
effective length of query: 852
effective length of database: 5,564,391
effective search space: 4740861132
effective search space used: 4740861132
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 15 (30.3 bits)
dna update 2009. 5.28
Homology vs DNA 
Query= Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Contig-U03215-1Q.Seq.d
         (868 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ372139) Dictyostelium discoideum cDNA clone:ddc11n09, 3' ...   652   0.0    4
(BJ401033) Dictyostelium discoideum cDNA clone:dds15k24, 3' ...   704   0.0    1
(AU075091) Dictyostelium discoideum slug cDNA, clone SSA219.      468   e-127  1
(C25586) Dictyostelium discoideum slug cDNA, clone SSA219.        198   e-113  5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.013  10
(AL356253) Human DNA sequence from clone RP11-318C5 on chrom...    52   0.036  1
(AL355869) Human DNA sequence *** SEQUENCING CANCELLED *** f...    52   0.036  1
(AC025729) Homo sapiens chromosome 13 clone RP11-2A19, WORKI...    52   0.036  1
(CV671621) RE-3-SJ-G_E02_RE-3-SJ-GE02-T7 Schistosoma japonic...    34   0.17   3
(AC178661) Strongylocentrotus purpuratus clone R3-11P19, WOR...    34   0.23   6
(AY810504) Schistosoma japonicum SJCHGC07360 protein mRNA, p...    34   0.25   3
(CV673822) RET7SJ_23B05.T7 Schistosoma japonicum reverse cDN...    34   0.25   3
(BX957269) Zebrafish DNA sequence from clone CH211-12C22 in ...    48   0.57   1
(BX005430) Zebrafish DNA sequence from clone DKEY-19E4 in li...    48   0.57   1
(AL353711) Human DNA sequence from clone RP11-187K14 on chro...    48   0.57   1
(BX571716) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.57   1
(EJ784087) 1093017301515 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.57   1
(DV377522) NACNF91TOB Aedes aegypti infected with Plasmodium...    48   0.57   1
(DV370383) NACMT23TO Aedes aegypti infected with Plasmodium ...    48   0.57   1
(DV364793) NACA702TF Aedes aegypti infected with Brugia Mala...    48   0.57   1
(DV359197) NACA876TR Aedes aegypti infected with Brugia Mala...    48   0.57   1
(DV359196) NACA876TF Aedes aegypti infected with Brugia Mala...    48   0.57   1
(DV348537) NABW894TR Aedes aegypti infected with Brugia Mala...    48   0.57   1
(DV348536) NABW894TF Aedes aegypti infected with Brugia Mala...    48   0.57   1
(DV321882) NABRI39TO Aedes aegypti infected with Plasmodium ...    48   0.57   1
(DV316491) NABOI81TR Aedes aegypti infected with Brugia Mala...    48   0.57   1
(DV316490) NABOI81TF Aedes aegypti infected with Brugia Mala...    48   0.57   1
(DV316489) NABOI81T1O Aedes aegypti infected with Brugia Mal...    48   0.57   1
(DV298877) NABPT08TR Aedes aegypti infected with Brugia Mala...    48   0.57   1
(AC112514) Oryza sativa Japonica Group chromosome 10 clone O...    40   0.98   6
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   1.2    6
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    38   1.2    7
(ES860460) WS02781.CR.1_H24 SS-IL-A-FL-14 Picea sitchensis c...    30   1.5    3
(CR500057) mth2-177K23FM1 BAC end, cultivar Jemalong A17 of ...    38   1.6    2
(AC180910) Strongylocentrotus purpuratus clone R3-3064L20, W...    32   1.6    7
(EE592434) EST036 Pima 3-79 fiber normalized cDNA library Go...    34   1.7    2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    44   1.7    9
(CG920164) MBEEF79TF mth2 Medicago truncatula genomic clone ...    38   1.8    2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    34   2.0    6
(CR354558) Zebrafish DNA sequence from clone CH211-12A23 in ...    42   2.2    4
(CR293506) Zebrafish DNA sequence from clone CH211-144M15 in...    46   2.2    1
(BX537341) Zebrafish DNA sequence from clone CH211-103C12 in...    46   2.2    1
(AL731861) Zebrafish DNA sequence from clone BUSM1-46I22 in ...    46   2.2    1
(AL591593) Zebrafish DNA sequence from clone BUSM1-211O13 Co...    46   2.2    1
(AC120163) Mus musculus chromosome 15, clone RP24-466O11, co...    46   2.2    1
(AC115746) Mus musculus chromosome 15, clone RP23-3J8, compl...    46   2.2    1
(AC110379) Mus musculus BAC clone RP24-193N24 from 15, compl...    46   2.2    1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    46   2.2    1
(CU463048) Medicago truncatula chromosome 5 clone mth2-65a4,...    46   2.2    1
(AF088979) Dictyostelium discoideum beige protein homolog (l...    46   2.2    1
(FP016025) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.2    1
(FP003595) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.2    1
(AC230978) Bos taurus clone CH240-494I12, WORKING DRAFT SEQU...    46   2.2    1
(AC204157) Xenopus (Silurana) tropicalis clone ISB1-35E1, WO...    46   2.2    1
(AC204101) Xenopus (Silurana) tropicalis clone CH216-101G13,...    46   2.2    1
(AC167776) Bos taurus clone CH240-114C10, WORKING DRAFT SEQU...    46   2.2    1
(AG624346) Macaca fuscata fuscata DNA, clone: MSB2-019J14_R,...    46   2.2    1
(EL843561) CBXT4433.g1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    46   2.2    1
(EL843560) CBXT4433.b1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    46   2.2    1
(CX884864) JGI_CAAL23095.fwd NIH_XGC_tropBrn4 Xenopus (Silur...    46   2.2    1
(CX852935) JGI_CAAL9101.fwd NIH_XGC_tropBrn4 Xenopus (Silura...    46   2.2    1
(CX438856) JGI_XZG6881.fwd NIH_XGC_tropGas7 Xenopus (Siluran...    46   2.2    1
(CX431469) JGI_XZG62201.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   2.2    1
(CX413386) JGI_XZT29792.fwd NIH_XGC_tropTad5 Xenopus (Silura...    46   2.2    1
(CX335330) JGI_XZT18383.fwd NIH_XGC_tropTad5 Xenopus (Silura...    46   2.2    1
(CR571086) Xenopus tropicalis EST, clone THdA024e04 5'.            46   2.2    1
(AL805335) Xenopus tropicalis EST, clone TNeu102k23 5'.            46   2.2    1
(AL790365) Xenopus tropicalis EST, clone TNeu101b24 5'.            46   2.2    1
(AL659930) Xenopus tropicalis EST, clone TNeu036p24 5'.            46   2.2    1
(AL638229) Xenopus tropicalis EST, clone TNeu010h08 5'.            46   2.2    1
(BX726521) Xenopus tropicalis EST, clone TTpA061o18 3'.            46   2.2    1
(BX726520) Xenopus tropicalis EST, clone TTpA061o18 5'.            46   2.2    1
(BX690471) Xenopus tropicalis EST, clone TNeu101b24 3'.            46   2.2    1
(FC253444) CAGH8002.rev CAGH Nematostella vectensis Nemve La...    46   2.2    1
(BX936406) Zebrafish DNA sequence from clone DKEY-13K17 in l...    38   2.4    5
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    36   2.5    6
(BX548158) Zebrafish DNA sequence from clone CH211-106G4 in ...    42   2.6    4
(AC034243) Homo sapiens chromosome 5 clone RP1-204O11, compl...    38   2.6    4
(AC191688) Pan troglodytes BAC clone CH251-670G16 from chrom...    34   2.6    6
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   2.7    7
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    34   2.8    6
(AC130452) Homo sapiens chromosome 16 clone CTA-279B10, comp...    40   2.8    3
(AC177437) Strongylocentrotus purpuratus clone R3-5C16, WORK...    36   2.8    7
(AC174117) Strongylocentrotus purpuratus clone R3-30K10, WOR...    40   2.9    3
(AC177516) Strongylocentrotus purpuratus clone R3-9M4, WORKI...    40   2.9    4
(AC200589) Macaca mulatta clone CH250-294I19, WORKING DRAFT ...    32   3.0    6
(CU927933) Zebrafish DNA sequence from clone CH73-35H3 in li...    42   3.1    4
(AC119652) Rattus norvegicus clone CH230-225N16, *** SEQUENC...    38   3.1    6
(AC006738) Caenorhabditis elegans clone Y37E11a, *** SEQUENC...    36   3.5    5
(FD465158) LARWA01TF Haematobia irritans 1st Instar Larvae H...    38   3.6    3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   3.7    6
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    36   3.7    7
(CR759876) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   3.9    3
(AC181014) Strongylocentrotus purpuratus clone R3-3055G15, W...    42   3.9    5
(AP004388) Homo sapiens genomic DNA, chromosome 8q23, clone:...    42   3.9    3
(AC153965) Mus musculus 10 BAC RP24-377E21 (Roswell Park Can...    36   4.0    3
(CU329696) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   4.0    5
(AQ973154) RPCI-23-334H18.TJ RPCI-23 Mus musculus genomic cl...    32   4.0    3
(CT573494) Zebrafish DNA sequence from clone DKEY-288C23 in ...    34   4.3    6
(AL137804) Human DNA sequence from clone RP1-296L11 on chrom...    40   4.3    5
(AC178139) Strongylocentrotus purpuratus clone R3-3078J17, W...    36   4.4    4
(AC154867) Medicago truncatula chromosome 2 clone mte1-6j20,...    32   4.5    5
(AE002137) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    44   4.8    2
(BZ038581) lju38b05.g1 B.oleracea002 Brassica oleracea genom...    40   4.9    2
(AC096953) Homo sapiens BAC clone RP11-272G21 from 4, comple...    34   5.0    6
(FE147163) LV_HP_RA52A08r Litopenaeus vannamei hepatopancrea...    42   5.1    2
(AC177110) Strongylocentrotus purpuratus clone R3-4014C19, W...    38   5.2    5
(CU463039) Zebrafish DNA sequence from clone CH73-389C16 in ...    40   5.5    4
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   5.5    11
(AL137228) Human chromosome 14 DNA sequence BAC R-369N15 of ...    38   5.5    4
(AC176980) Strongylocentrotus purpuratus clone R3-1103C23, W...    34   5.6    5
(ET958888) CHO_OF586xl12r1.ab1 CHO_OF Nicotiana tabacum geno...    34   5.7    2
(BJ437435) Dictyostelium discoideum cDNA clone:ddv34b10, 3' ...    34   5.7    2
(BJ437231) Dictyostelium discoideum cDNA clone:ddv33i16, 3' ...    34   5.7    2
(BJ349855) Dictyostelium discoideum cDNA clone:dda37i22, 3' ...    34   5.7    2
(BJ438519) Dictyostelium discoideum cDNA clone:ddv37m02, 3' ...    34   5.7    2
(BJ436843) Dictyostelium discoideum cDNA clone:ddv32l08, 3' ...    34   5.7    2
(BJ438142) Dictyostelium discoideum cDNA clone:ddv36b13, 3' ...    34   5.7    2
(BJ441756) Dictyostelium discoideum cDNA clone:ddv47b24, 3' ...    34   5.7    2
(BJ442074) Dictyostelium discoideum cDNA clone:ddv48c22, 3' ...    34   5.8    2
(BJ436390) Dictyostelium discoideum cDNA clone:ddv31d02, 3' ...    34   5.8    2
(BJ443698) Dictyostelium discoideum cDNA clone:ddv53f22, 3' ...    34   5.8    2
(BJ436943) Dictyostelium discoideum cDNA clone:ddv32p13, 3' ...    34   5.8    2
(BJ436696) Dictyostelium discoideum cDNA clone:ddv31p22, 3' ...    34   5.8    2
(BJ406550) Dictyostelium discoideum cDNA clone:dds35l13, 3' ...    34   5.8    2
(BJ442145) Dictyostelium discoideum cDNA clone:ddv48p24, 3' ...    34   5.8    2
(BJ446727) Dictyostelium discoideum cDNA clone:ddv63l14, 3' ...    34   5.8    2
(BJ445695) Dictyostelium discoideum cDNA clone:ddv60g10, 3' ...    34   5.8    2
(BJ437208) Dictyostelium discoideum cDNA clone:ddv33e14, 3' ...    34   5.8    2
(BJ350460) Dictyostelium discoideum cDNA clone:dda39n20, 3' ...    34   5.8    2
(BJ442192) Dictyostelium discoideum cDNA clone:ddv49i06, 3' ...    34   5.8    2
(BJ442818) Dictyostelium discoideum cDNA clone:ddv51f03, 3' ...    34   5.8    2
(BJ437102) Dictyostelium discoideum cDNA clone:ddv33o05, 3' ...    34   5.8    2
(BJ438523) Dictyostelium discoideum cDNA clone:ddv37m06, 3' ...    34   5.8    2
(BJ443613) Dictyostelium discoideum cDNA clone:ddv53c13, 3' ...    34   5.8    2
(BJ437609) Dictyostelium discoideum cDNA clone:ddv34e20, 3' ...    34   5.8    2
(BJ444558) Dictyostelium discoideum cDNA clone:ddv56c19, 3' ...    34   5.8    2
(BJ437250) Dictyostelium discoideum cDNA clone:ddv33l18, 3' ...    34   5.8    2
(BJ444641) Dictyostelium discoideum cDNA clone:ddv57c03, 3' ...    34   5.8    2
(BJ357846) Dictyostelium discoideum cDNA clone:dda64k23, 3' ...    34   5.8    2
(BJ442591) Dictyostelium discoideum cDNA clone:ddv50i11, 3' ...    34   5.8    2
(BJ441842) Dictyostelium discoideum cDNA clone:ddv48e01, 3' ...    34   5.8    2
(BJ445383) Dictyostelium discoideum cDNA clone:ddv59e12, 3' ...    34   5.8    2
(BJ444120) Dictyostelium discoideum cDNA clone:ddv55f08, 3' ...    34   5.8    2
(BJ443806) Dictyostelium discoideum cDNA clone:ddv54n02, 3' ...    34   5.8    2
(BJ444557) Dictyostelium discoideum cDNA clone:ddv56b24, 3' ...    34   5.8    2
(BJ437540) Dictyostelium discoideum cDNA clone:ddv34h14, 3' ...    34   5.8    2
(BJ443719) Dictyostelium discoideum cDNA clone:ddv53k19, 3' ...    34   5.8    2
(BJ439554) Dictyostelium discoideum cDNA clone:ddv40h19, 3' ...    34   5.8    2
(BJ440063) Dictyostelium discoideum cDNA clone:ddv42d13, 3' ...    34   5.8    2
(BJ444478) Dictyostelium discoideum cDNA clone:ddv56b16, 3' ...    34   5.8    2
(BJ438534) Dictyostelium discoideum cDNA clone:ddv37o06, 3' ...    34   5.8    2
(BJ443107) Dictyostelium discoideum cDNA clone:ddv51n19, 3' ...    34   5.8    2
(BJ440514) Dictyostelium discoideum cDNA clone:ddv43n20, 3' ...    34   5.8    2
(BJ440739) Dictyostelium discoideum cDNA clone:ddv44g18, 3' ...    34   5.8    2
(BJ444952) Dictyostelium discoideum cDNA clone:ddv58a01, 3' ...    34   5.8    2
(BJ440981) Dictyostelium discoideum cDNA clone:ddv45f12, 3' ...    34   5.8    2
(BJ356854) Dictyostelium discoideum cDNA clone:dda61l18, 3' ...    34   5.8    2
(BJ439976) Dictyostelium discoideum cDNA clone:ddv42b08, 3' ...    34   5.8    2
(BJ438442) Dictyostelium discoideum cDNA clone:ddv37o23, 3' ...    34   5.8    2
(BJ440233) Dictyostelium discoideum cDNA clone:ddv43f02, 3' ...    34   5.8    2
(BJ443928) Dictyostelium discoideum cDNA clone:ddv54j17, 3' ...    34   5.8    2
(BJ440109) Dictyostelium discoideum cDNA clone:ddv42m13, 3' ...    34   5.8    2
(BJ440938) Dictyostelium discoideum cDNA clone:ddv45n01, 3' ...    34   5.8    2
(BJ441115) Dictyostelium discoideum cDNA clone:ddv45p16, 3' ...    34   5.8    2
(BJ440461) Dictyostelium discoideum cDNA clone:ddv43c22, 3' ...    34   5.8    2
(BJ440268) Dictyostelium discoideum cDNA clone:ddv43m03, 3' ...    34   5.8    2
(BJ440397) Dictyostelium discoideum cDNA clone:ddv43f13, 3' ...    34   5.9    2
(EK154316) 1095456066838 Global-Ocean-Sampling_GS-31-01-01-1...    38   6.2    2
(AC128034) Rattus norvegicus clone CH230-472G4, *** SEQUENCI...    36   6.4    3
(AB023032) Arabidopsis thaliana genomic DNA, chromosome 5, T...    34   6.6    5
(AL713983) Mouse DNA sequence from clone RP23-244C21 on chro...    36   6.7    6
(BX511025) Zebrafish DNA sequence from clone DKEY-262L17 in ...    38   6.8    5
(AL136129) Human DNA sequence from clone RP11-417E7 on chrom...    42   6.9    3
(CR388417) Zebrafish DNA sequence from clone DKEY-211M6 in l...    38   6.9    3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   7.3    7
(AL138736) Human DNA sequence *** SEQUENCING CANCELLED *** f...    36   7.3    5
(AL591175) Zebrafish DNA sequence from clone BUSM1-37I06 in ...    34   7.5    5
(AP005657) Oryza sativa Japonica Group genomic DNA, chromoso...    38   7.8    4
(BX296527) Zebrafish DNA sequence from clone DKEYP-32C3 in l...    40   7.8    4
(DX559662) GH_MBb0027G02r GH_MBb Gossypium hirsutum genomic ...    42   8.0    2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   8.2    5
(AC176316) Strongylocentrotus purpuratus clone R3-3054E13, W...    36   8.3    6
(AC091964) Homo sapiens chromosome 5 clone RP11-475H8, WORKI...    44   8.3    4
(BX088543) Mouse DNA sequence from clone RP23-234K17 on chro...    34   8.6    6
(FD462793) LARVU88TR Haematobia irritans 1st Instar Larvae H...    38   8.6    2
(AC110622) Mus musculus BAC clone RP23-204H3 from chromosome...    32   8.7    7
(CR388131) Zebrafish DNA sequence from clone DKEY-114G9 in l...    44   8.9    1
(BX248418) Zebrafish DNA sequence from clone DKEY-181I3 in l...    44   8.9    1
(BX005220) Zebrafish DNA sequence from clone DKEY-82D4 in li...    44   8.9    1
(BV218466) S233P6149RD4.T0 LabradorRetriever Canis familiari...    44   8.9    1
(BX000694) Mouse DNA sequence from clone RP23-30B5 on chromo...    44   8.9    1
(AL807234) Mouse DNA sequence from clone RP23-293E12 on chro...    44   8.9    1
(AL596246) Mouse DNA sequence from clone RP23-186E14 on chro...    44   8.9    1
(AC109153) Mus musculus chromosome 15, clone RP23-51J23, com...    44   8.9    1
(AC206792) Pongo abelii BAC clone CH276-289M21 from chromoso...    44   8.9    1
(AC206533) Pongo abelii BAC clone CH276-61P4 from chromosome...    44   8.9    1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    44   8.9    1
(AY350710) Brassica oleracea clone BAC Bo37N21, partial sequ...    44   8.9    1
(AF222718) Chrysodidymus synuroideus mitochondrion, complete...    44   8.9    1
(EA735253) Sequence 6699 from patent US 7368527.                   44   8.9    1
(GC700441) Sequence 15686 from patent US 6812339.                  44   8.9    1
(GC696787) Sequence 12031 from patent US 6812339.                  44   8.9    1
(FM212567) Sus scrofa ACTC1 gene for cardiac muscle alpha ac...    44   8.9    1
(FM212566) Sus scrofa ACTC1 gene for cardiac muscle alpha ac...    44   8.9    1
(CU151872) Pig DNA sequence from clone CH242-290P9 on chromo...    44   8.9    1
(X79583) L.forbesi mitochondria lrRNA gene.                        44   8.9    1
(CU467807) H.melpomene DNA sequence from clone AEHM-27I5.          44   8.9    1
(AF110075) Loligo forbesi 16S ribosomal RNA gene, partial se...    44   8.9    1
(AY682094) Homo sapiens fibroblast growth factor 9 (glia-act...    44   8.9    1
(AL139378) Human DNA sequence from clone RP11-271B5 on chrom...    44   8.9    1
(AK290792) Homo sapiens cDNA FLJ77087 complete cds, highly s...    44   8.9    1
(AC127460) Homo sapiens chromosome 5 clone RP11-689B23, comp...    44   8.9    1
(AC026458) Homo sapiens chromosome 16 clone RP11-10K17, comp...    44   8.9    1
(AC025882) Homo sapiens chromosome 17, clone RP11-445F12, co...    44   8.9    1
(AC023315) Homo sapiens chromosome 17, clone RP11-333J10, co...    44   8.9    1
(AC011403) Homo sapiens chromosome 5 clone CTB-3P13, complet...    44   8.9    1
(AC010428) Homo sapiens chromosome 5 clone CTD-2199C13, comp...    44   8.9    1
(AC007011) Homo sapiens chromosome 16 clone 165E7, complete ...    44   8.9    1
(AC148540) Pan troglodytes clone CH251-18B19, WORKING DRAFT ...    44   8.9    1
(AC138471) Homo sapiens chromosome 19 clone CTD-2538G12, ***...    44   8.9    1
(AC122997) Rattus norvegicus clone CH230-34F7, *** SEQUENCIN...    44   8.9    1
(AC118571) Lemur catta clone LB2-262H14, WORKING DRAFT SEQUE...    44   8.9    1
(AC105865) Rattus norvegicus clone CH230-102C19, *** SEQUENC...    44   8.9    1
(CU855542) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(CU633172) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(CU074288) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(CU041245) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(AC217094) Sus scrofa clone RP44-234H7, WORKING DRAFT SEQUEN...    44   8.9    1
(AC176478) Strongylocentrotus purpuratus clone R3-3070K21, W...    44   8.9    1
(AC023518) Mus musculus chromosome 11 clone RP23-321F3 map 1...    44   8.9    1
(CU349214) Aphanomyces euteiches cDNA.                             44   8.9    1
(CU349094) Aphanomyces euteiches cDNA.                             44   8.9    1
(AK034556) Mus musculus 12 days embryo embryonic body betwee...    44   8.9    1
(BH251449) SALK_011603 Arabidopsis thaliana TDNA insertion l...    44   8.9    1
(AZ826217) 2M0101L18R Mouse 10kb plasmid UUGC1M library Mus ...    44   8.9    1
(AQ842626) CpG1223A CpIOWAgDNA1 Cryptosporidium parvum genom...    44   8.9    1
(EK546270) 1095516094970 Global-Ocean-Sampling_GS-32-01-01-1...    44   8.9    1
(EK073583) 1092961013662 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(EJ988877) 1093023032478 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.9    1
(EJ967054) 1093022051295 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.9    1
(AM635277) Entamoeba dispar GSS, clone dispar132g01.p1k.           44   8.9    1
(EJ462036) 1093018566199 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.9    1
(EJ146479) 1092343719140 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.9    1
(EJ137281) 1092343613050 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.9    1
(DU101759) JBnY023J07F Brassica napus BAC library JBnY Brass...    44   8.9    1
(DH436391) Macropus eugenii DNA with T3 primer, fosmid clone...    44   8.9    1
(DE375016) Bombyx mori genomic DNA, BAC clone:BET_644_L21.         44   8.9    1
(BZ021561) oed21g12.b1 B.oleracea002 Brassica oleracea genom...    44   8.9    1
(BX171518) Danio rerio genomic clone DKEY-175O6, genomic sur...    44   8.9    1
(BH565578) BOHMA51TF BOHM Brassica oleracea genomic clone BO...    44   8.9    1
(DV265436) AEDBU25TO Aedes re-sequencing Aedes aegypti cDNA ...    44   8.9    1
(DV265435) AEDBU25TF Aedes re-sequencing Aedes aegypti cDNA ...    44   8.9    1
(DV254912) AEDAA40TO Aedes re-sequencing Aedes aegypti cDNA ...    44   8.9    1
(DN897808) nap26a03.y1 Zebrafish anterior segment (minus len...    44   8.9    1
(DK280071) Drosophila auraria mRNA, adult full-length cDNA c...    44   8.9    1
(DA917725) Homo sapiens cDNA clone SMINT2002463, 5' end, mRN...    44   8.9    1
(DA634563) Homo sapiens cDNA clone KIDNE2016486, 5' end, mRN...    44   8.9    1
(DA625778) Homo sapiens cDNA clone KIDNE2005883, 5' end, mRN...    44   8.9    1
(DA624967) Homo sapiens cDNA clone KIDNE2004898, 5' end, mRN...    44   8.9    1
(DA602576) Homo sapiens cDNA clone HSYRA2008304, 5' end, mRN...    44   8.9    1
(DA265999) Homo sapiens cDNA clone BRCAN2019350, 5' end, mRN...    44   8.9    1
(DA200100) Homo sapiens cDNA clone BRAWH2003993, 5' end, mRN...    44   8.9    1
(DA094957) Homo sapiens cDNA clone BRACE3004560, 5' end, mRN...    44   8.9    1
(CX070238) UCRCS08_15F02_g Parent Washington Navel Orange Ca...    44   8.9    1
(CT805027) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   8.9    1
(CT804230) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   8.9    1
(CT800209) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   8.9    1
(CT795819) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   8.9    1
(CR745677) RZPD Homo sapiens cDNA clone IMAGp998M114212 = IM...    44   8.9    1
(AL796551) Xenopus tropicalis EST, clone TNeu141a02 5'.            44   8.9    1
(AL785843) Xenopus tropicalis EST, clone TNeu137d03 5'.            44   8.9    1
(CJ335651) Molgula tectiformis cDNA, embryo just before hatc...    44   8.9    1
(BB760951) Mus musculus melanocyte cDNA, RIKEN full-length e...    44   8.9    1
(GD997581) 454GmaGlobSeed740230 Soybean Seeds Containing Glo...    44   8.9    1
(GD872728) 454GmaGlobSeed615377 Soybean Seeds Containing Glo...    44   8.9    1
(GD864372) 454GmaGlobSeed607021 Soybean Seeds Containing Glo...    44   8.9    1
(GD686569) 454GmaGlobSeed429218 Soybean Seeds Containing Glo...    44   8.9    1
(FM116580) Rattus norvegicus EST, 5'-end sequence, clone etn...    44   8.9    1
(FE746322) CAYC3613.g1 CAYC Petrolisthes cinctipes heart, ne...    44   8.9    1
(EY943407) RS3DF83JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    44   8.9    1
(EV154244) 0078105 Brassica napus Bud library Brassica napus...    44   8.9    1
(EV154186) 0078047 Brassica napus Bud library Brassica napus...    44   8.9    1
(EV153825) 0077686 Brassica napus Bud library Brassica napus...    44   8.9    1
(EV152758) 0096029 Brassica napus Bud library Brassica napus...    44   8.9    1
(EV152671) 0095942 Brassica napus Bud library Brassica napus...    44   8.9    1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    44   8.9    1
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    44   8.9    1
(AC178848) Strongylocentrotus purpuratus clone R3-29A23, WOR...    32   8.9    6
(AL132673) Human DNA sequence from clone RP3-474G15 on chrom...    36   9.1    3
(DY891057) CeleSEQ7578 Cunninghamella elegans pBluescript (E...    34   9.4    3
(AC179950) Strongylocentrotus purpuratus clone R3-3033I20, W...    42   9.6    5
(AC232727) Tupaia belangeri clone CH275-268C19, WORKING DRAF...    38   9.8    4

>(BJ372139) Dictyostelium discoideum cDNA clone:ddc11n09, 3' end,
           single read.
          Length = 740

 Score =  652 bits (329), Expect(4) = 0.0
 Identities = 332/333 (99%)
 Strand = Plus / Minus


Query: 180 gctagattaattcaattggtttggagaagatggagatggcaatttagtatgagtatatca 239
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 562 gctagattaattcaattggtttggagaagatggagatggcaatctagtatgagtatatca 503


Query: 240 caaaatagatcaatgtttaatagtaaggaagcattgttttgtgtgaaatatatcgaatat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caaaatagatcaatgtttaatagtaaggaagcattgttttgtgtgaaatatatcgaatat 443


Query: 300 gctaaaactttaagtagaatgagaagagaacgtagagcaattcaatctcaatgtcaagat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctaaaactttaagtagaatgagaagagaacgtagagcaattcaatctcaatgtcaagat 383


Query: 360 agtcaaccatcacaacaaagttcaatcattgaagagattaaatcaactctatccaattgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agtcaaccatcacaacaaagttcaatcattgaagagattaaatcaactctatccaattgt 323


Query: 420 gatgttacaacgataacaaaaagtgatgacaatgataatagtagtattaaaatcattgaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gatgttacaacgataacaaaaagtgatgacaatgataatagtagtattaaaatcattgaa 263


Query: 480 tctttacaacttaaaattaaatcacttgaggat 512
           |||||||||||||||||||||||||||||||||
Sbjct: 262 tctttacaacttaaaattaaatcacttgaggat 230

 Score =  355 bits (179), Expect(4) = 0.0
 Identities = 179/179 (100%)
 Strand = Plus / Minus


Query: 1   aatccacaaacttttgggtggtagatttgctgcaattgttgcatgtatttttggtttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatccacaaacttttgggtggtagatttgctgcaattgttgcatgtatttttggtttatt 681


Query: 61  attattatcatttgtaattgaaagttttgcaagattaactcaagcaacgagtcatcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attattatcatttgtaattgaaagttttgcaagattaactcaagcaacgagtcatcaaag 621


Query: 121 accaatattaaatttagtatcattagttgaagcacaaaagaaagaaagagattcagcag 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 accaatattaaatttagtatcattagttgaagcacaaaagaaagaaagagattcagcag 562

 Score =  143 bits (72), Expect(4) = 0.0
 Identities = 72/72 (100%)
 Strand = Plus / Minus


Query: 647 tgtttttaataatgaaaatccacaagcccaatcatctcctcaacaacaaccacaacttca 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  tgtttttaataatgaaaatccacaagcccaatcatctcctcaacaacaaccacaacttca 36


Query: 707 tgtttttaataa 718
           ||||||||||||
Sbjct: 35  tgtttttaataa 24

 Score = 44.1 bits (22), Expect(4) = 0.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus


Query: 721 aaaatcaattcacttaaattat 742
           ||||||||||||||||||||||
Sbjct: 22  aaaatcaattcacttaaattat 1

 Score = 48.1 bits (24), Expect = 0.57
 Identities = 36/40 (90%)
 Strand = Plus / Minus


Query: 687 caacaacaaccacaacttcatgtttttaataatgaaaatc 726
           ||||||||||  ||||  ||||||||||||||||||||||
Sbjct: 115 caacaacaacatcaacaacatgtttttaataatgaaaatc 76

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,035,952,768
Number of extensions: 74995875
Number of successful extensions: 11314579
Number of sequences better than 10.0: 293
Length of query: 868
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 844
Effective length of database: 99,340,224,878
Effective search space: 83843149797032
Effective search space used: 83843149797032
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.22
Homology vs Protein 
Query= Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Contig-U03215-1Q.Seq.d
         (868 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 788,449,950
Number of extensions: 10199303
Number of successful extensions: 24154
Number of sequences better than 10.0: 0
Number of HSP's gapped: 24153
Number of HSP's successfully gapped: 0
Length of query: 289
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 162
Effective length of database: 640,137,871
Effective search space: 103702335102
Effective search space used: 103702335102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.61  gvh: 0.38  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.07
 nuc: 0.09  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U03215-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0