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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16005-1
Contig ID Contig-U16005-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16005-1 (Contig-U16005-1Q) /CSM_Contig/Contig-U16005-1Q.Seq.d
ATATGTTCCAATCTATTTGTATTTTTAAAGCAACACACAAATAACAATAA
TAATAATAATAAATAATAAACTTATACCTACATAATATTTGGTTTTTGTT
TGTCAAAAAAAAAAAAAGAAATTTGTAAAATTTTATTATAAAACATACAA
ATTAAAAAAAAAAAAAAAAAAAAACAAATATTTTCACTTACAATTTAAAA
AAAAAAAAAAAAA----------GATAGTGCTTTTAAAAATTTANAAAGA
TGTAATGATATGCTTGTAGATGACCCAAATTTTAGTACAAATAAAGTACA
TAAAGATAAATTGGATGATTATTTAAATGAATATAGAAGATTAAAAAAGA
ATATAAAATCAACATTAGAAAGTTTTGAACTATTGGAAGGTTCAACATAT
AATAAAAATAAAGATACAGAAATACCAATGACAAGTTTATTGAGAGAACA
TTCTACCCTTCAAAGTAGTTCCTATGTACAAGATTCAATATTGGGTCAAG
CAAGACAAGCACATGAAGCTTTAGAAAATCAAAGAAGAATATTAAGAGGT
ACTTCTCATGAAATTAATACAATGCCAAGTTTATTTCAAACAATTGATGG
TGTAACATCAAAAATTNAAAGATATAAGCAAAGAAATGTTGTAGTTTTAG
GTTTGTTAATTGGTGGTTTAATTTGTTTCCTTTTTTATTATAGCCTTAAA
AAGTAATAAATNAAAATTANCNANATATATNANANNTNNAANNTNNNNNN
TNNAATATATATTTAAAAATA
Gap gap included
Contig length 761
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1190639
End point 1189870
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U16005
List of clone(s) 

est1=FC-BE19F,1,213
est2=VFC168Z,214,570
est3=FC-BE19Z,233,761
Translated Amino Acid sequence 
yvpiylyf*sntqitiiiiinnklipt*YLVFVCQKKKKKFVKFYYKTYKLKKKKKKNKY
FHLQFKKKKK---

---DSAFKNLXRCNDMLVDDPNFSTNKVHKDKLDDYLNEYRRLKKNIKSTLESFELLEGS
TYNKNKDTEIPMTSLLREHSTLQSSSYVQDSILGQARQAHEALENQRRILRGTSHEINTM
PSLFQTIDGVTSKIXRYKQRNVVVLGLLIGGLICFLFYYSLKK**xkixxiyxxxxxxxx
iyi*k
Translated Amino Acid sequence (All Frames) 
Frame A:
icsnlfvflkqhtnnnnnnnk**tytyiifgfclskkkkeickill*niqikkkkkkkqi
fslti*kkkkk---

---DSAFKNLXRCNDMLVDDPNFSTNKVHKDKLDDYLNEYRRLKKNIKSTLESFELLEGS
TYNKNKDTEIPMTSLLREHSTLQSSSYVQDSILGQARQAHEALENQRRILRGTSHEINTM
PSLFQTIDGVTSKIXRYKQRNVVVLGLLIGGLICFLFYYSLKK**xkixxiyxxxxxxxx
iyi*k

Frame B:
yvpiylyf*sntqitiiiiinnklipt*YLVFVCQKKKKKFVKFYYKTYKLKKKKKKNKY
FHLQFKKKKK---

---ivllkixkdvmicl*mtqilvqikyikinwmii*mnied*kri*nqh*kvlnywkvq
hiikikiqkyq*qvy*enilpfkvvpmykiqywvkqdkhmkl*kikeey*evllmkliqc
qvyfkqlmv*hqkxkdiskeml*f*vc*lvv*fvsffiialksnkxklxxyxxxxxxxxx
yifkn

Frame C:
mfqsicifkathk*q*****iinlylhniwflfvkkkkrnl*nfiikhtn*kkkkkktni
ftynlkkkkk---

---*cf*kfxkm**yacr*pkf*yk*st*r*ig*lfk*i*kikkeykinirkf*tigrfn
i**k*ryrntndkfiertfypsk*flctrfnigssktst*sfrkskknikryfs*n*yna
kfisnn*wcniknxki*akkccsfrfvnwwfnlfpfll*p*kvinxnxxxixxxxxxxxn
iylki
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16005-1 (Contig-U16005-1Q)
/CSM_Contig/Contig-U16005-1Q.Seq.d
         (771 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16005-1 (Contig-U16005-1Q) /CSM_Contig/Conti...   969  0.0
Contig-U09287-1 (Contig-U09287-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U05087-1 (Contig-U05087-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U15745-1 (Contig-U15745-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U14064-1 (Contig-U14064-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U04742-1 (Contig-U04742-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U13123-1 (Contig-U13123-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U11216-1 (Contig-U11216-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U08617-1 (Contig-U08617-1Q) /CSM_Contig/Conti...    36  0.077

>Contig-U16005-1 (Contig-U16005-1Q) /CSM_Contig/Contig-U16005-1Q.Seq.d
          Length = 771

 Score =  969 bits (489), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 224 gatagtgcttttaaaaatttanaaagatgtaatgatatgcttgtagatgacccaaatttt 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gatagtgcttttaaaaatttanaaagatgtaatgatatgcttgtagatgacccaaatttt 283

                                                                       
Query: 284 agtacaaataaagtacataaagataaattggatgattatttaaatgaatatagaagatta 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agtacaaataaagtacataaagataaattggatgattatttaaatgaatatagaagatta 343

                                                                       
Query: 344 aaaaagaatataaaatcaacattagaaagttttgaactattggaaggttcaacatataat 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaaaagaatataaaatcaacattagaaagttttgaactattggaaggttcaacatataat 403

                                                                       
Query: 404 aaaaataaagatacagaaataccaatgacaagtttattgagagaacattctacccttcaa 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaaaataaagatacagaaataccaatgacaagtttattgagagaacattctacccttcaa 463

                                                                       
Query: 464 agtagttcctatgtacaagattcaatattgggtcaagcaagacaagcacatgaagcttta 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agtagttcctatgtacaagattcaatattgggtcaagcaagacaagcacatgaagcttta 523

                                                                       
Query: 524 gaaaatcaaagaagaatattaagaggtacttctcatgaaattaatacaatgccaagttta 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaaaatcaaagaagaatattaagaggtacttctcatgaaattaatacaatgccaagttta 583

                                                                       
Query: 584 tttcaaacaattgatggtgtaacatcaaaaattnaaagatataagcaaagaaatgttgta 643
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tttcaaacaattgatggtgtaacatcaaaaattnaaagatataagcaaagaaatgttgta 643

                                                                       
Query: 644 gttttaggtttgttaattggtggtttaatttgtttccttttttattatagccttaaaaag 703
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gttttaggtttgttaattggtggtttaatttgtttccttttttattatagccttaaaaag 703

                                      
Query: 704 taataaatnaaaattancnanatatat 730
           |||||||||||||||||||||||||||
Sbjct: 704 taataaatnaaaattancnanatatat 730


 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 1  atatgttccaatctatttgtatttttaaagcaacacaca 39
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atatgttccaatctatttgtatttttaaagcaacacaca 39


 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 118 gaaatttgtaaaattttattataaaacatacaaatt 153
           ||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaaatttgtaaaattttattataaaacatacaaatt 153


 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 70  acttatacctacataatatttggtttttgtttgtc 104
           |||||||||||||||||||||||||||||||||||
Sbjct: 70  acttatacctacataatatttggtttttgtttgtc 104


>Contig-U09287-1 (Contig-U09287-1Q) /CSM_Contig/Contig-U09287-1Q.Seq.d
          Length = 1221

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 418 agaaataccaatgacaagtttatt 441
           |||||| |||||||||||||||||
Sbjct: 376 agaaatcccaatgacaagtttatt 399


 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 660 ttggtggtttaattt 674
           |||||||||||||||
Sbjct: 654 ttggtggtttaattt 668


>Contig-U05087-1 (Contig-U05087-1Q) /CSM_Contig/Contig-U05087-1Q.Seq.d
          Length = 311

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 attaaaaaagaatataaaat 359
           ||||||||||||||||||||
Sbjct: 12  attaaaaaagaatataaaat 31


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,121
Number of Sequences: 8402
Number of extensions: 21121
Number of successful extensions: 2545
Number of sequences better than 10.0: 281
length of query: 771
length of database: 8,075,542
effective HSP length: 16
effective length of query: 755
effective length of database: 7,941,110
effective search space: 5995538050
effective search space used: 5995538050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 8
Homology vs DNA 
Query= Contig-U16005-1 (Contig-U16005-1Q) /CSM_Contig/Contig-U16005-1Q.Seq.d
         (771 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284608) Dictyostelium discoideum gamete cDNA clone:FC-BE1...   932   0.0    2
(BJ429966) Dictyostelium discoideum cDNA clone:ddv5g17, 3' e...   678   0.0    1
(AU284607) Dictyostelium discoideum gamete cDNA clone:FC-BE1...    78   4e-25  2
(AC195677) MACACA MULATTA BAC clone CH250-120J20 from chromo...    48   0.001  3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   0.004  11
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    34   0.013  9
(EK443742) 1095462299466 Global-Ocean-Sampling_GS-32-01-01-1...    52   0.031  1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    32   0.036  12
(AE001410) Plasmodium falciparum 3D7 chromosome 2 section 47...    36   0.18   5
(CU469082) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.28   2
(CU468313) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.28   2
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    40   0.30   8
(AC230191) Bos taurus clone CH240-518K7, WORKING DRAFT SEQUE...    38   0.32   4
(AC013444) Homo sapiens BAC clone RP11-470B22 from 2, comple...    40   0.35   6
(FH327967) CHO_OF4563xf08r1.ab1 CHO_OF4 Nicotiana tabacum ge...    34   0.36   2
(ET717431) CHO_OF113xd18r1.ab1 CHO_OF Nicotiana tabacum geno...    34   0.37   2
(AU261496) Dictyostelium discoideum vegetative cDNA clone:VS...    34   0.37   2
(DU968160) 319975 Tomato MboI BAC Library Solanum lycopersic...    44   0.37   2
(CT737307) CH251-89L9, complete sequence.                          48   0.49   1
(AC191699) Pan troglodytes BAC clone CH251-638K10 from chrom...    48   0.49   1
(AC113223) Homo sapiens X BAC RP13-597O16 (Roswell Park Canc...    48   0.49   1
(AC112495) Homo sapiens X BAC RP11-149B9 (Roswell Park Cance...    48   0.49   1
(AC023510) Homo sapiens 12 BAC RP11-713N11 (Roswell Park Can...    48   0.49   1
(AC147725) Otolemur garnettii clone CH256-269A1, WORKING DRA...    48   0.49   1
(AC119033) Homo sapiens chromosome X clone RP11-3I16, *** SE...    48   0.49   1
(AC099428) Rattus norvegicus clone CH230-101K6, WORKING DRAF...    48   0.49   1
(AC025889) Homo sapiens chromosome 12 clone RP11-509B2 map 1...    48   0.49   1
(AC204176) Otolemur garnettii clone CH256-377F18, WORKING DR...    48   0.49   1
(AC019165) Homo sapiens chromosome X clone RP11-149B9, WORKI...    48   0.49   1
(BZ011264) oei72c06.g1 B.oleracea002 Brassica oleracea genom...    48   0.49   1
(DY749424) 184919 Pigtailed macaque testis library Macaca ne...    48   0.49   1
(DY749423) 184918 Pigtailed macaque testis library Macaca ne...    48   0.49   1
(AJ762402) Gerbera hybrid cv. 'Terra Regina' EST, clone G000...    48   0.49   1
(CD131761) MG1-0013G-V284-G08-U.B MG1-0013 Schistosoma manso...    48   0.49   1
(AC232084) Solanum tuberosum strain Diploid genotype RH89-03...    44   0.52   2
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion...    32   0.63   7
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         38   0.72   6
(AC073071) Homo sapiens BAC clone RP11-238I13 from 7, comple...    38   0.80   5
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    40   0.84   8
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   0.97   10
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   1.00   9
(DE132774) Oryzias latipes DNA, reverse end of BAC clone: Mn...    34   1.3    2
(AP008983) Clostridium phage c-st genomic DNA, complete genome.    40   1.5    8
(AM637572) Entamoeba dispar GSS, clone dispar46c06.p1k.            36   1.5    2
(AM660682) Entamoeba moshkovskii FIC GSS, clone mosh102c11.q1k.    36   1.6    3
(EY265444) BF01037B2B10.f1 Normalized subtracted keck librar...    36   1.7    3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   1.7    11
(AC206449) Pongo abelii BAC clone CH276-181N14 from chromoso...    46   1.7    4
(AC172881) Brassica rapa subsp. pekinensis clone KBrH105A17,...    38   1.8    5
(BV491612) S221P61299RF10.T0 Yvonne Pan troglodytes troglody...    46   1.9    1
(BV462905) rpq80d05.b1 Clint Pan troglodytes verus STS genom...    46   1.9    1
(BV460028) qvr01f11.b1 Clint Pan troglodytes verus STS genom...    46   1.9    1
(AC191967) Pan troglodytes BAC clone CH251-273J15 from chrom...    46   1.9    1
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    46   1.9    1
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    46   1.9    1
(AL049631) Human DNA sequence from clone RP3-513M9 on chromo...    46   1.9    1
(AC095065) Homo sapiens BAC clone RP11-648P3 from 4, complet...    46   1.9    1
(AC004168) Homo sapiens chromosome 4 clone B159L21 map 4q25,...    46   1.9    1
(AC132763) Rattus norvegicus clone CH230-304I22, *** SEQUENC...    46   1.9    1
(AC131606) Rattus norvegicus clone CH230-2H20, *** SEQUENCIN...    46   1.9    1
(AC119423) Papio anubis clone rp41-199n8, WORKING DRAFT SEQU...    46   1.9    1
(CU582851) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(CU469351) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(AC212293) Pongo abelii chromosome UNKNOWN clone CH276-422A1...    46   1.9    1
(AC211563) Pongo abelii chromosome UNKNOWN clone CH276-92J12...    46   1.9    1
(AC021634) Homo sapiens chromosome 4 clone RP11-258J7 map 4,...    46   1.9    1
(AC015834) Homo sapiens clone RP11-23H13, WORKING DRAFT SEQU...    46   1.9    1
(EJ923398) 1093018770794 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(AM628579) Entamoeba dispar GSS, clone dispar2b01.p1k.             46   1.9    1
(AM608252) Entamoeba invadens IP1 GSS, clone inv087c04.p1k.        46   1.9    1
(EL501130) 059_PFLAB1-S-PLATE11B.AB1 Blood stage Plasmodium ...    46   1.9    1
(EL500209) 016_PFLAB1-M-P27B.AB1 Blood stage Plasmodium falc...    46   1.9    1
(DN681610) CGX19-C07.y1d-s SHGC-CGX Gasterosteus aculeatus c...    46   1.9    1
(DN046662) JGI_CABA4645.rev NIH_XGC_tropKid1 Xenopus (Silura...    46   1.9    1
(CR775129) Pongo abelii mRNA; EST DKFZp459I0953_r1 (from clo...    46   1.9    1
(BU498691) PfESToac01e04.y1 Plasmodium falciparum 3D7 asexua...    46   1.9    1
(BU496433) PfESToab50b04.y1 Plasmodium falciparum 3D7 asexua...    46   1.9    1
(BQ739676) PfESToab48g09.y1 Plasmodium falciparum 3D7 asexua...    46   1.9    1
(FM073253) Rattus norvegicus EST, 3'-end sequence, clone etn...    46   1.9    1
(FM073252) Rattus norvegicus EST, 3'-end sequence, clone etn...    46   1.9    1
(CU928605) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.0    7
(CU928454) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.0    6
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   2.0    7
(CU984557) Brassica rapa subsp. pekinensis clone KBrH017J01,...    42   2.2    5
(AC107976) Homo sapiens chromosome 15, clone CTD-2576F9, com...    38   2.3    6
(AC141998) Rattus norvegicus clone CH230-295O7, *** SEQUENCI...    42   2.3    4
(AC117407) Homo sapiens chromosome 3 clone RP11-30F1, *** SE...    36   2.4    6
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    34   2.5    8
(AL590395) Human DNA sequence from clone RP11-390H11 on chro...    32   2.5    5
(BM959029) PLATE_10_F09_11.AB1 GS Lambda-Triplex, 10 day ger...    36   2.6    3
(AM450179) Vitis vinifera contig VV78X274283.2, whole genome...    42   2.7    2
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    44   2.8    9
(AC230136) Bos taurus clone CH240-521E11, WORKING DRAFT SEQU...    32   3.7    2
(AC221288) Bos taurus clone CH240-402H24, WORKING DRAFT SEQU...    32   3.7    2
(AC192888) Echinops telfairi clone CH238-282P21, WORKING DRA...    32   3.7    2
(AC193268) Echinops telfairi clone CH238-130B9, WORKING DRAF...    32   3.7    2
(AC067809) Homo sapiens chromosome 15 clone RP11-751L6 map 1...    44   3.7    3
(AC195001) Echinops telfairi clone CH238-484N16, WORKING DRA...    32   3.7    2
(AG576444) Mus musculus molossinus DNA, clone:MSMg01-500K11....    40   3.9    2
(AC232463) Brassica rapa subsp. pekinensis clone KBrB023I24,...    38   4.0    4
(AM480562) Vitis vinifera contig VV78X089994.3, whole genome...    36   4.2    4
(AC141923) Medicago truncatula clone mth2-7f19, complete seq...    32   4.3    6
(AM630233) Entamoeba dispar GSS, clone dispar53f10.q1k.            36   4.4    2
(AC224282) Bos taurus clone CH240-490O18, WORKING DRAFT SEQU...    36   4.5    8
(FH721384) CHO_OF5065xi04f1.ab1 CHO_OF5 Nicotiana tabacum ge...    34   4.6    2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   4.6    7
(AC092415) Homo sapiens chromosome 3 clone RP11-9A14, comple...    40   4.7    4
(AM640036) Entamoeba dispar GSS, clone dispar71d12.q1k.            36   4.7    2
(AM625624) Entamoeba dispar GSS, clone dispar119h02.p1k.           40   4.8    2
(AM641711) Entamoeba dispar GSS, clone dispar8b03.p1k.             32   4.9    2
(BH149126) ENTPZ21TF Entamoeba histolytica Sheared DNA Entam...    32   4.9    2
(BU129869) 603118657F1 CSEQCHL21 Gallus gallus cDNA clone Ch...    42   4.9    2
(AM625921) Entamoeba dispar GSS, clone dispar122b06.q1k.           32   5.0    2
(FI257161) CccaBb054-L5JR CccABb Cajanus cajan genomic clone...    32   5.0    2
(AC132220) Homo sapiens chromosome 15, clone RP11-1142D4, co...    38   5.0    6
(FI232391) CccaBb002-M12JF CccABb Cajanus cajan genomic clon...    32   5.0    2
(FI268112) CccaBb055-O23JR CccABb Cajanus cajan genomic clon...    32   5.0    2
(FP090896) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   5.1    8
(BH157571) ENTQX69TF Entamoeba histolytica Sheared DNA Entam...    36   5.4    2
(CR533430) Zebrafish DNA sequence from clone DKEYP-87E3 in l...    44   5.6    4
(CG812942) SOYEI17TH LargeInsertSoybeanGenLib Glycine max ge...    30   5.6    3
(AF031627) Plasmodium falciparum long-chain acyl-CoA synthet...    32   5.7    3
(AF007828) Plasmodium falciparum acyl CoA synthetase (ACOAL)...    32   5.7    3
(ER282364) 1092343406136 Global-Ocean-Sampling_GS-34-01-01-1...    42   5.7    2
(AC113122) Mus musculus chromosome 8, clone RP23-349P4, comp...    36   6.0    5
(DU017828) 317329 Tomato MboI BAC Library Solanum lycopersic...    36   6.2    2
(CR383668) Zebrafish DNA sequence from clone DKEY-199M13 in ...    40   6.2    6
(AC168874) Bos taurus clone CH240-209N9, WORKING DRAFT SEQUE...    42   6.4    4
(AC113417) Homo sapiens chromosome 5 clone RP11-569B5, compl...    42   6.7    4
(BP636166) Arabidopsis thaliana cDNA clone:RAFL18-03-K02, 3'...    32   6.7    3
(AY217738) Eimeria tenella apicoplast, complete genome.            34   6.9    5
(AM472377) Vitis vinifera contig VV78X123069.2, whole genome...    36   7.0    3
(AX392734) Sequence 24 from Patent WO0212526.                      38   7.1    4
(AR707081) Sequence 24 from patent US 6933145.                     38   7.1    4
(DX532941) GH_MBb0045O21f GH_MBb Gossypium hirsutum genomic ...    40   7.3    2
(AC023469) Homo sapiens BAC clone RP11-501P16 from 2, comple...    42   7.4    4
(CR626884) Zebrafish DNA sequence from clone DKEY-83H2 in li...    44   7.6    1
(BX004775) Zebrafish DNA sequence from clone CH211-134D7 in ...    44   7.6    1
(BV416763) S229P6189RG2.T0 GermanShepherd Canis familiaris S...    44   7.6    1
(AC148713) Macaca mulatta Major Histocompatibility Complex B...    44   7.6    1
(AC148712) Macaca mulatta Major Histocompatibility Complex B...    44   7.6    1
(AC148678) Macaca mulatta Major Histocompatibility Complex B...    44   7.6    1
(AB128049) Macaca mulatta genes, MHC class I region, partial...    44   7.6    1
(AM467871) Vitis vinifera contig VV78X015918.8, whole genome...    44   7.6    1
(AM464626) Vitis vinifera contig VV78X097672.40, whole genom...    44   7.6    1
(AM463913) Vitis vinifera contig VV78X119454.6, whole genome...    44   7.6    1
(AX348987) Sequence 445 from Patent WO0202807.                     44   7.6    1
(AX346116) Sequence 1187 from Patent WO0200928.                    44   7.6    1
(AX344750) Sequence 175 from Patent WO0200927.                     44   7.6    1
(AX344300) Sequence 147 from Patent WO0200926.                     44   7.6    1
(DQ182884) Ligidium beieri isolate PI4 12S ribosomal RNA gen...    44   7.6    1
(DQ182883) Ligidium beieri isolate PI3 12S ribosomal RNA gen...    44   7.6    1
(DQ182882) Ligidium beieri isolate PI2 12S ribosomal RNA gen...    44   7.6    1
(DQ182881) Ligidium beieri isolate PI1 12S ribosomal RNA gen...    44   7.6    1
(AM910996) Plasmodium knowlesi strain H chromosome 14, compl...    44   7.6    1
(AL591599) Human DNA sequence from clone RP11-519I15 on chro...    44   7.6    1
(AL356307) Human DNA sequence from clone RP11-393M20 on chro...    44   7.6    1
(AL121846) Human DNA sequence from clone RP1-87H18 on chromo...    44   7.6    1
(AC068713) Homo sapiens chromosome 15 clone RP11-1129I3 map ...    44   7.6    1
(AC007365) Homo sapiens BAC clone RP11-451M22 from 2, comple...    44   7.6    1
(AC000114) Human PAC clone DJ527C21 from Xq23, complete sequ...    44   7.6    1
(AC129247) Rattus norvegicus clone CH230-259E4, WORKING DRAF...    44   7.6    1
(AC095770) Rattus norvegicus clone CH230-9J14, *** SEQUENCIN...    44   7.6    1
(AC067885) Homo sapiens chromosome 10 clone RP11-276J19 map ...    44   7.6    1
(CU570960) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.6    1
(CU234175) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.6    1
(AP010139) Lotus japonicus genomic DNA, clone: LjT46P10, TM0...    44   7.6    1
(AP009905) Lotus japonicus genomic DNA, clone: LjT09C09, TM2...    44   7.6    1
(AC232090) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.6    1
(AC232088) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.6    1
(AC232068) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.6    1
(AC232056) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.6    1
(AC232043) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.6    1
(AC232034) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.6    1
(AC232003) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.6    1
(AC222928) Bos taurus clone CH240-435A1, WORKING DRAFT SEQUE...    44   7.6    1
(AC217698) Solanum tuberosum chromosome 1 clone RH050N11, **...    44   7.6    1
(AC200940) Strongylocentrotus purpuratus clone R3-1033C12, W...    44   7.6    1
(AC190065) Macaca mulatta clone CH250-148M8, WORKING DRAFT S...    44   7.6    1
(AC184494) Strongylocentrotus purpuratus clone R3-1107K20, W...    44   7.6    1
(AC183996) Otolemur garnettii clone CH256-9K9, WORKING DRAFT...    44   7.6    1
(AC182941) Bos taurus clone CH240-310P3, WORKING DRAFT SEQUE...    44   7.6    1
(AC181552) Strongylocentrotus purpuratus clone R3-1109N20, W...    44   7.6    1
(ET763665) CHO_OF162xm12f1.ab1 CHO_OF Nicotiana tabacum geno...    44   7.6    1
(ER869355) PPTC382TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   7.6    1
(ER838409) PPTC822TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   7.6    1
(ER809912) POTLU38TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   7.6    1
(ER795084) POTL204TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   7.6    1
(ER457219) 1092963873179 Global-Ocean-Sampling_GS-35-01-01-1...    44   7.6    1
(EK579590) 1095521408740 Global-Ocean-Sampling_GS-32-01-01-1...    44   7.6    1
(EK569581) 1095521068445 Global-Ocean-Sampling_GS-32-01-01-1...    44   7.6    1
(AM627501) Entamoeba dispar GSS, clone dispar23a07.q1k.            44   7.6    1
(AM607134) Entamoeba invadens IP1 GSS, clone inv075a04.q1k.        44   7.6    1
(EJ089336) 1095460148549 Global-Ocean-Sampling_GS-26-01-01-1...    44   7.6    1
(EI836762) POTH546TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   7.6    1
(EI384681) POTDD50TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   7.6    1
(DU953934) 221976 Tomato MboI BAC Library Solanum lycopersic...    44   7.6    1
(DH352475) Oryzias latipes Fosmid clone:GOLWFno728_f08, reve...    44   7.6    1
(DE957981) Macropus eugenii DNA, BAC clone: MEB1-158G19_F, 5...    44   7.6    1
(CZ971799) 171624 Tomato MboI BAC Library Solanum lycopersic...    44   7.6    1
(CT500401) A BAC library has been constructed from cultivar ...    44   7.6    1
(CT280116) Sus scrofa genomic clone CH242-180A10, genomic su...    44   7.6    1
(CE558448) tigr-gss-dog-17000327467717 Dog Library Canis lup...    44   7.6    1
(EB242887) PEG003-C-219983-501 Normalized Pedal-Pleural Gang...    44   7.6    1
(DW346176) PP_LEc0007C03f Peach shoot Prunus persica cDNA cl...    44   7.6    1
(GE320833) OXBB-aaa60f04.g1 Oxytricha_pSMART_OXBB Sterkiella...    44   7.6    1
(BH743681) gt25g10.b1 BoBuds01 Brassica oleracea genomic clo...    40   8.1    2
(CU660013) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   8.1    7
(AC129220) Mus musculus BAC clone RP24-475J22 from chromosom...    38   8.2    4
(AP001038) Homo sapiens genomic DNA, chromosome 21, clone:P1...    38   8.4    4
(AC095696) Rattus norvegicus clone CH230-9D9, *** SEQUENCING...    34   8.9    6
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    38   9.0    9
(AL590236) Human DNA sequence from clone RP11-145I17 on chro...    32   9.0    6
(AC010594) Homo sapiens chromosome 5 clone CTC-478B9, comple...    36   9.1    3
(AC090450) Homo sapiens chromosome 8, clone RP11-242M12, com...    38   9.9    5
(AG310733) Mus musculus molossinus DNA, clone:MSMg01-093D19....    36   9.9    2
(AC187165) Glycine max clone gmw2-91b16, complete sequence.        40   9.9    5

>(AU284608) Dictyostelium discoideum gamete cDNA clone:FC-BE19, 3'
           end single read.
          Length = 529

 Score =  932 bits (470), Expect(2) = 0.0
 Identities = 485/485 (100%)
 Strand = Plus / Plus


Query: 246 aaagatgtaatgatatgcttgtagatgacccaaattttagtacaaataaagtacataaag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   aaagatgtaatgatatgcttgtagatgacccaaattttagtacaaataaagtacataaag 63


Query: 306 ataaattggatgattatttaaatgaatatagaagattaaaaaagaatataaaatcaacat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ataaattggatgattatttaaatgaatatagaagattaaaaaagaatataaaatcaacat 123


Query: 366 tagaaagttttgaactattggaaggttcaacatataataaaaataaagatacagaaatac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tagaaagttttgaactattggaaggttcaacatataataaaaataaagatacagaaatac 183


Query: 426 caatgacaagtttattgagagaacattctacccttcaaagtagttcctatgtacaagatt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 caatgacaagtttattgagagaacattctacccttcaaagtagttcctatgtacaagatt 243


Query: 486 caatattgggtcaagcaagacaagcacatgaagctttagaaaatcaaagaagaatattaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caatattgggtcaagcaagacaagcacatgaagctttagaaaatcaaagaagaatattaa 303


Query: 546 gaggtacttctcatgaaattaatacaatgccaagtttatttcaaacaattgatggtgtaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaggtacttctcatgaaattaatacaatgccaagtttatttcaaacaattgatggtgtaa 363


Query: 606 catcaaaaattnaaagatataagcaaagaaatgttgtagttttaggtttgttaattggtg 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catcaaaaattnaaagatataagcaaagaaatgttgtagttttaggtttgttaattggtg 423


Query: 666 gtttaatttgtttccttttttattatagccttaaaaagtaataaatnaaaattancnana 725
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtttaatttgtttccttttttattatagccttaaaaagtaataaatnaaaattancnana 483


Query: 726 tatat 730
           |||||
Sbjct: 484 tatat 488

 Score = 36.2 bits (18), Expect(2) = 0.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus


Query: 754 aatatatatttaaaaata 771
           ||||||||||||||||||
Sbjct: 512 aatatatatttaaaaata 529

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 934,079,364
Number of extensions: 68992348
Number of successful extensions: 6072216
Number of sequences better than 10.0: 220
Length of query: 771
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 747
Effective length of database: 96,409,374,237
Effective search space: 72017802555039
Effective search space used: 72017802555039
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.20
Homology vs Protein 
Query= Contig-U16005-1 (Contig-U16005-1Q) /CSM_Contig/Contig-U16005-1Q.Seq.d
         (771 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001328_97(CP001328|pid:none) Micromonas sp. RCC299 chromosome ...    60   6e-08
AK071820_1(AK071820|pid:none) Oryza sativa Japonica Group cDNA c...    60   8e-08
BT077698_1(BT077698|pid:none) Lepeophtheirus salmonis Pacific fo...    59   2e-07
EU969670_1(EU969670|pid:none) Zea mays clone 333859 golgi SNARE ...    59   2e-07
BT065971_1(BT065971|pid:none) Zea mays full-length cDNA clone ZM...    59   2e-07
BT052356_1(BT052356|pid:none) Medicago truncatula clone MTYFD_FE...    55   2e-06
CP000590_331(CP000590|pid:none) Ostreococcus lucimarinus CCE9901...    55   3e-06
BT080027_1(BT080027|pid:none) Esox lucius clone eluc-evq-523-336...    54   7e-06
BT073636_1(BT073636|pid:none) Oncorhynchus mykiss clone omyk-evn...    53   9e-06
BC093179_1(BC093179|pid:none) Danio rerio golgi SNAP receptor co...    53   1e-05
BT074259_1(BT074259|pid:none) Oncorhynchus mykiss clone omyk-evo...    52   2e-05
CR848485_1(CR848485|pid:none) Xenopus tropicalis finished cDNA, ...    52   3e-05
CR954210_342(CR954210|pid:none) Ostreococcus tauri strain OTTH05...    51   5e-05
AJ720233_1(AJ720233|pid:none) Gallus gallus mRNA for hypothetica...    49   1e-04
(Q2TBU3) RecName: Full=Golgi SNAP receptor complex member 1;  &B...    48   4e-04
(O08522) RecName: Full=Golgi SNAP receptor complex member 1; Alt...    47   5e-04
(O95249) RecName: Full=Golgi SNAP receptor complex member 1; Alt...    47   5e-04
AY369814_1(AY369814|pid:none) Pan troglodytes golgi SNAP recepto...    47   5e-04
AF047438_1(AF047438|pid:none) Homo sapiens GOS28/P28 protein mRN...    45   0.003
BX842635_10(BX842635|pid:none) Neurospora crassa DNA linkage gro...    40   0.082
(O35165) RecName: Full=Golgi SNAP receptor complex member 2; Alt...    40   0.11
FM992694_158(FM992694|pid:none) Candida dubliniensis CD36 chromo...    39   0.14
BC053235_1(BC053235|pid:none) Danio rerio golgi SNAP receptor co...    39   0.18
AF007549_1(AF007549|pid:none) Rattus norvegicus golgi SNARE (GS2...    39   0.18
BC142254_1(BC142254|pid:none) Bos taurus golgi SNAP receptor com...    39   0.24
AE001362_39(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    39   0.24
CP000304_200(CP000304|pid:none) Pseudomonas stutzeri A1501, comp...    39   0.24
AF007550_1(AF007550|pid:none) Mus musculus golgi SNARE (GS27) mR...    38   0.31
CR382125_21(CR382125|pid:none) Kluyveromyces lactis strain NRRL ...    38   0.31
(O35166) RecName: Full=Golgi SNAP receptor complex member 2; Alt...    38   0.41
BC077416_1(BC077416|pid:none) Xenopus laevis MGC81773 protein, m...    37   0.53
CP000744_4484(CP000744|pid:none) Pseudomonas aeruginosa PA7, com...    37   0.90
BC054249_1(BC054249|pid:none) Xenopus laevis golgi SNAP receptor...    36   1.5
AY813784_1(AY813784|pid:none) Schistosoma japonicum SJCHGC02507 ...    36   1.5
CP001251_887(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ...    35   2.0
AE000513_1154(AE000513|pid:none) Deinococcus radiodurans R1 chro...    35   2.6
AE014188_418(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.6
CP000496_615(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    35   3.4
CP000968_658(CP000968|pid:none) Candidatus Korarchaeum cryptofil...    35   3.4
(Q9VE50) RecName: Full=Probable 28 kDa Golgi SNARE protein; AltN...    35   3.4
(Q10411) RecName: Full=Sporulation-specific protein 15;  &CU3296...    35   3.4
(Q6NRG6) RecName: Full=Spindle assembly abnormal protein 6 homol...    35   3.4
AY094935_1(AY094935|pid:none) Drosophila melanogaster RH54060 fu...    35   3.4
(O14653) RecName: Full=Golgi SNAP receptor complex member 2; Alt...    34   4.5
AF229796_1(AF229796|pid:none) Homo sapiens golgi SNARE isoform B...    34   4.5
BT045769_1(BT045769|pid:none) Salmo salar clone ssal-rgf-530-352...    34   4.5
T32297(T32297)hypothetical protein M151.4 - Caenorhabditis elegans     34   4.5
AF024502_2(AF024502|pid:none) Caenorhabditis elegans cosmid M151...    34   4.5
AK303650_1(AK303650|pid:none) Homo sapiens cDNA FLJ61028 complet...    34   4.5
AE005174_1342(AE005174|pid:none) Escherichia coli O157:H7 EDL933...    34   5.9
CP000800_1089(CP000800|pid:none) Escherichia coli E24377A, compl...    34   5.9
CP001034_2007(CP001034|pid:none) Natranaerobius thermophilus JW/...    34   5.9
EU902683_1(EU902683|pid:none) Escherichia coli strain TB182A put...    34   5.9
(P69434) RecName: Full=Biofilm PGA synthesis protein pgaA; Flags...    34   5.9
CP001357_780(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    33   7.7
CR940352_700(CR940352|pid:none) Theileria annulata strain Ankara...    33   7.7
CP000885_3166(CP000885|pid:none) Clostridium phytofermentans ISD...    33   7.7

>CP001328_97(CP001328|pid:none) Micromonas sp. RCC299 chromosome 7,
           complete sequence.
          Length = 230

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
 Frame = +2

Query: 266 VDDPNFSTNKVHKDKLDDYLNEYRRLKKNIKSTLESFELLEGSTYNKNKDTEIPM----- 430
           V D    T   HKD L +Y +E RR K  ++ + ES ELL G        +
Sbjct: 79  VGDTRAHTLARHKDILAEYQHELRRAKNAVQQSRESAELLGGGRAGGGLSSSDHFGDSSA 138

Query: 431 -TSLLREHSTLQSSSYVQDSILGQARQAHEALENQRRILRGTSHEINTMPSLFQTIDGVT 607
            + L+RE  T+ S +   D ++GQA+    AL NQR I +  +  ++ + S F  ++ +
Sbjct: 139 GSQLMRERGTIMSGTSKVDDVIGQAQATAAALVNQREIFQNVNRNLDAIGSRFPMVNNLL 198

Query: 608 SKIXRYKQRNXXXXXXXXXXXXCFLFYYSLKK 703
             I R + ++             F   Y L K
Sbjct: 199 QAIRRKRSKDTMVLATVVAICTAFTLIYWLSK 230

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 781,662,728
Number of extensions: 14540902
Number of successful extensions: 36192
Number of sequences better than 10.0: 57
Number of HSP's gapped: 36152
Number of HSP's successfully gapped: 57
Length of query: 257
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 131
Effective length of database: 643,374,430
Effective search space: 84282050330
Effective search space used: 84282050330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.57  gvh: 0.10  alm: 0.18  top: 0.47  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 1.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U16005-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0