Contig-U15999-1
Contig ID Contig-U15999-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15999-1 (Contig-U15999-1Q) /CSM_Contig/Contig-U15999-1Q.Seq.d
GTTGATAATAATCAACATCAACAACAACTACAACTTGAACAACAAGATAT
AGATAAATATAAAGCAAGATTGGCTGCTTTAGATAAAAAGATACCTTTCC
CAAGAGAAGATTCATTTTCAACTTTAATTTTACCAACTAATTCTTCTTCC
TCTTCCTCTTCTTCTTCATCTTTACCTTCAACTGTATCAACCACTAATAC
AAATACTAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
TAAATACAACTGTACCAACAAATGTACCAACGACAACAACAACAGATGAT
TCTACTGTTAAAAATACTTCTACAACAACAGCAACTACTGCAACAGAAGA
CCATGGATTAAATACTGCATTTAATTCTTCAAGTATTCCAATCCCTTCAA
AATTGGCATCACCCCTTCAATCACCAAATCTTTCACCAAAAGCATCTTCC
GTTTCAACTTCAATGGCTGCATTATCCTCATCAACTTTAGTATCAAGTAA
TGCTAATACTACAACCACCAATAATCCTGTTTTAACAACTACCACAACAA
CAACAACAACAACAGCCGTATTAAACTCA----------ATATATATATA
TATATATAACTTTTTTAAAATTATGTCTTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAGAAAAAAAAAAAAACAAAAACCCCCTTTTGTTTATGT
TTAAAAATTTTTTTTTTATGAATTCATAAAAAAGAAATAATAATAATAAT
AATAAAATAAATAAATTTATATAAAAAAAAA

Gap gap included
Contig length 771
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1599016
End point 1598338
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U15999
List of clone(s)

est1=FC-AZ17F,1,579
est2=FC-AZ17Z,580,771
Translated Amino Acid sequence
VDNNQHQQQLQLEQQDIDKYKARLAALDKKIPFPREDSFSTLILPTNSSSSSSSSSSLPS
TVSTTNTNTNNNNNNNNNNNNNNINTTVPTNVPTTTTTDDSTVKNTSTTTATTATEDHGL
NTAFNSSSIPIPSKLASPLQSPNLSPKASSVSTSMAALSSSTLVSSNANTTTTNNPVLTT
TTTTTTTTAVLNS---

---YIYIYITFLKLCLFKKKKKKKKKERKKKKQKPPFVYV*kfffyefikkk******nk
*iyikk


Translated Amino Acid sequence (All Frames)
Frame A:
VDNNQHQQQLQLEQQDIDKYKARLAALDKKIPFPREDSFSTLILPTNSSSSSSSSSSLPS
TVSTTNTNTNNNNNNNNNNNNNNINTTVPTNVPTTTTTDDSTVKNTSTTTATTATEDHGL
NTAFNSSSIPIPSKLASPLQSPNLSPKASSVSTSMAALSSSTLVSSNANTTTTNNPVLTT
TTTTTTTTAVLNS---

---iyiyiynffkimsf*kkkkkkkkrkkkkktktpfclclkiffl*ihkkeiiiiiik*
inlykkk

Frame B:
liiininnnynlnnki*inikqdwll*ikrylsqekihfql*fyqlillplplllhlylq
lyqpliqiliiiiiiiiiiiiii*iqlyqqmyqrqqqqmilllkillqqqqllqqktmd*
ilhlilqvfqslqnwhhpfnhqifhqkhlpfqlqwlhyphql*yqvmlilqppiilf*ql
pqqqqqqqpy*t---

---YIYIYITFLKLCLFKKKKKKKKKERKKKKQKPPFVYV*kfffyefikkk******nk
*iyikk

Frame C:
***ststtttt*ttryr*i*skigcfr*kdtfpkrrfifnfnftn*ffflflfffiftfn
cinh*yky**************ykynctnkctndnnnr*fyc*kyfynnsnycnrrpwik
yci*ffkysnpfkigitpsitksftksifrfnfngciilinfsik*c*yynhq*scfnny
hnnnnnnsrikl---

---iyiyi*lf*nyvflkkkkkkkkkkekkknknpllfmfknfffmns*krnnnnnnkin
kfi*kk

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15999-1 (Contig-U15999-1Q)
/CSM_Contig/Contig-U15999-1Q.Seq.d
(781 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15999-1 (Contig-U15999-1Q) /CSM_Contig/Conti... 569 e-162
Contig-U15224-1 (Contig-U15224-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U12197-1 (Contig-U12197-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U09565-1 (Contig-U09565-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U09098-1 (Contig-U09098-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U16558-1 (Contig-U16558-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U16308-1 (Contig-U16308-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U15883-1 (Contig-U15883-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12510-1 (Contig-U12510-1Q) /CSM_Contig/Conti... 42 0.001

>Contig-U15999-1 (Contig-U15999-1Q) /CSM_Contig/Contig-U15999-1Q.Seq.d
Length = 781

Score = 569 bits (287), Expect = e-162
Identities = 287/287 (100%)
Strand = Plus / Plus


Query: 257 caactgtaccaacaaatgtaccaacgacaacaacaacagatgattctactgttaaaaata 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caactgtaccaacaaatgtaccaacgacaacaacaacagatgattctactgttaaaaata 316


Query: 317 cttctacaacaacagcaactactgcaacagaagaccatggattaaatactgcatttaatt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttctacaacaacagcaactactgcaacagaagaccatggattaaatactgcatttaatt 376


Query: 377 cttcaagtattccaatcccttcaaaattggcatcaccccttcaatcaccaaatctttcac 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttcaagtattccaatcccttcaaaattggcatcaccccttcaatcaccaaatctttcac 436


Query: 437 caaaagcatcttccgtttcaacttcaatggctgcattatcctcatcaactttagtatcaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caaaagcatcttccgtttcaacttcaatggctgcattatcctcatcaactttagtatcaa 496


Query: 497 gtaatgctaatactacaaccaccaataatcctgttttaacaactacc 543
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtaatgctaatactacaaccaccaataatcctgttttaacaactacc 543


Score = 276 bits (139), Expect = 5e-74
Identities = 139/139 (100%)
Strand = Plus / Plus


Query: 1 gttgataataatcaacatcaacaacaactacaacttgaacaacaagatatagataaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgataataatcaacatcaacaacaactacaacttgaacaacaagatatagataaatat 60


Query: 61 aaagcaagattggctgctttagataaaaagatacctttcccaagagaagattcattttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagcaagattggctgctttagataaaaagatacctttcccaagagaagattcattttca 120


Query: 121 actttaattttaccaacta 139
|||||||||||||||||||
Sbjct: 121 actttaattttaccaacta 139


Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 609 acttttttaaaattatgtcttttt 632
||||||||||||||||||||||||
Sbjct: 609 acttttttaaaattatgtcttttt 632


Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 684 cccccttttgtttatgtttaaaaa 707
||||||||||||||||||||||||
Sbjct: 684 cccccttttgtttatgtttaaaaa 707


Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 173 taccttcaactgtatcaacca 193
|||||||||||||||||||||
Sbjct: 173 taccttcaactgtatcaacca 193


Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 565 gccgtattaaactca 579
|||||||||||||||
Sbjct: 565 gccgtattaaactca 579


>Contig-U15224-1 (Contig-U15224-1Q) /CSM_Contig/Contig-U15224-1Q.Seq.d
Length = 905

Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus


Query: 14 aacatcaacaacaactacaacttgaacaacaa 45
||||||||||||||| ||||||| ||||||||
Sbjct: 634 aacatcaacaacaacaacaacttcaacaacaa 665


Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 316 acttctacaacaacagcaac 335
||||| ||||||||||||||
Sbjct: 653 acttcaacaacaacagcaac 672


Score = 32.2 bits (16), Expect = 1.2
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 11 atcaacatcaacaacaactacaac 34
||||||| ||||||||||| ||||
Sbjct: 637 atcaacaacaacaacaacttcaac 660


>Contig-U12197-1 (Contig-U12197-1Q) /CSM_Contig/Contig-U12197-1Q.Seq.d
Length = 1896

Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 13 caacatcaacaacaactacaac 34
||||||||||||||||||||||
Sbjct: 494 caacatcaacaacaactacaac 515


Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Plus


Query: 13 caacatcaacaacaactacaacttgaacaacaa 45
||||| ||||||||||||||||| ||||||||
Sbjct: 230 caacagcaacaacaactacaactacaacaacaa 262


Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 19 caacaacaactacaac 34
||||||||||||||||
Sbjct: 254 caacaacaactacaac 269


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,206
Number of Sequences: 8402
Number of extensions: 23206
Number of successful extensions: 7304
Number of sequences better than 10.0: 578
length of query: 781
length of database: 8,075,542
effective HSP length: 16
effective length of query: 765
effective length of database: 7,941,110
effective search space: 6074949150
effective search space used: 6074949150
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 8
Homology vs DNA
Query= Contig-U15999-1 (Contig-U15999-1Q) /CSM_Contig/Contig-U15999-1Q.Seq.d
(781 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C25758) Dictyostelium discoideum gamete cDNA, clone FC-AZ17. 569 0.0 4
(C25759) Dictyostelium discoideum gamete cDNA, clone FC-AZ17. 48 9e-09 2
(EB325191) CNSN01-F-103481-501 Normalized CNS library (juven... 38 2e-04 3
(EB583826) AGENCOURT_51486839 D. ananassae EST Drosophila an... 40 9e-04 3
(EB221946) PEG002-C-101952-501 Normalized Pedal-Pleural Gang... 40 0.001 4
(AY152858) Dictyostelium discoideum diacylglycerol kinase pr... 34 0.002 4
(AM410751) Beta vulgaris subsp. vulgaris microsatellite DNA,... 44 0.003 3
(DQ120959) Hucho taimen clone ZB-10 microsatellite sequence. 42 0.003 3
(FE770183) CCAG5444.b7 CCAG Petrolisthes cinctipes heart, gi... 44 0.003 2
(EB293589) CNSN01-F-043140-501 Normalized CNS library (juven... 42 0.003 2
(DB857784) Nilaparvata lugens mRNA, EST clone:NLSG4351, 5' e... 36 0.006 3
(BJ427510) Dictyostelium discoideum cDNA clone:ddv62l15, 5' ... 44 0.008 3
(EY329908) CAWY3078.fwd CAWY Helobdella robusta Subtracted E... 34 0.008 4
(FE192113) LV_NC_RA56F10r Litopenaeus vannamei nerve cord cD... 36 0.009 3
(EU527977) Theromyzon tessulatum glutamine-rich teleoblast p... 44 0.010 3
(FG078693) UI-FF-IH0-aao-i-10-0-UI.r1 Ceratitis capitata adu... 38 0.010 3
(EY304886) CAWX18918.fwd CAWX Helobdella robusta Primary Ear... 36 0.011 3
(BJ371297) Dictyostelium discoideum cDNA clone:ddc57m07, 5' ... 42 0.013 3
(DQ120973) Hucho taimen clone ZB-28 microsatellite sequence. 36 0.015 3
(EF466095) Caladenia huegelii clone C9 microsatellite sequence. 48 0.018 2
(AC136672) Rattus norvegicus clone CH230-256H15, *** SEQUENC... 36 0.021 2
(EY343834) CAWZ12724.fwd CAWZ Helobdella robusta Primary Lat... 40 0.022 2
(EY354249) CAWZ2965.fwd CAWZ Helobdella robusta Primary Late... 40 0.025 2
(EY292487) CAWX10580.fwd CAWX Helobdella robusta Primary Ear... 50 0.025 2
(U66911) Dictyostelium discoideum ORF DG1007 gene, partial cds. 40 0.025 2
(EG551347) MM01C22_XP Sugar Beet germination cDNA library Be... 40 0.025 2
(DH506983) Monosiga ovata DNA, fosmid clone: MOF-079B13, gen... 42 0.026 2
(EY312548) CAWX24075.fwd CAWX Helobdella robusta Primary Ear... 40 0.026 2
(EY301381) CAWX15544.fwd CAWX Helobdella robusta Primary Ear... 40 0.026 2
(CR749749) Zebrafish DNA sequence from clone CH211-153P17 in... 42 0.027 5
(GD227207) G1045P3106FK18.T1 Aplysia californica Pooled Norm... 36 0.027 3
(AC127932) Rattus norvegicus clone CH230-325E3, *** SEQUENCI... 40 0.029 3
(BJ383091) Dictyostelium discoideum cDNA clone:ddc46h21, 3' ... 42 0.030 3
(EB596298) AGENCOURT_51932348 D. ananassae EST Drosophila an... 52 0.032 1
(EB585078) AGENCOURT_51888723 D. ananassae EST Drosophila an... 52 0.032 1
(EB576337) AGENCOURT_51878599 D. ananassae EST Drosophila an... 52 0.032 1
(DH508148) Monosiga ovata DNA, fosmid clone: MOF-080P09, gen... 40 0.033 2
(AC129693) Rattus norvegicus clone CH230-20I1, *** SEQUENCIN... 40 0.034 3
(EY297544) CAWX13422.fwd CAWX Helobdella robusta Primary Ear... 42 0.041 3
(FF705495) XABT113155.fwd Gateway compatible cien cDNA libra... 30 0.057 4
(BJ371247) Dictyostelium discoideum cDNA clone:ddc57a08, 5' ... 36 0.071 3
(DQ121074) Hucho taimen clone ZA-68 microsatellite sequence. 40 0.072 3
(AC132698) Rattus norvegicus clone CH230-53M7, *** SEQUENCIN... 36 0.075 2
(AC130111) Rattus norvegicus clone CH230-215N2, WORKING DRAF... 36 0.075 2
(BJ388648) Dictyostelium discoideum cDNA clone:dds6h17, 5' e... 40 0.080 3
(FC839823) CBHI8551.fwd CBHI Metridium senile tentacle Metri... 44 0.088 2
(EY307852) CAWX20701.fwd CAWX Helobdella robusta Primary Ear... 28 0.088 3
(EY299141) CAWX14299.fwd CAWX Helobdella robusta Primary Ear... 28 0.088 3
(EY310575) CAWX22226.rev CAWX Helobdella robusta Primary Ear... 36 0.089 3
(DY892476) CeleSEQ10723 Cunninghamella elegans pBluescript (... 36 0.093 4
(CZ904971) gy39d06.x1.b.screen Bread wheat methylation filte... 40 0.10 2
(EY292675) CAWX10688.fwd CAWX Helobdella robusta Primary Ear... 40 0.11 3
(FF702982) XABT111484.fwd Gateway compatible cien cDNA libra... 34 0.11 3
(AC195450) Glycine tomentella clone gtt1-310p22, complete se... 38 0.12 6
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.12 8
(AC176692) Strongylocentrotus purpuratus clone R3-112B18, WO... 50 0.13 1
(FC554634) AIAI-aad50d05.b1 Anclostoma_caninum_EST_L3_Activa... 34 0.13 3
(FK014709) GLNBS10TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 40 0.14 3
(AU062116) Dictyostelium discoideum slug cDNA, clone SLH662. 30 0.15 4
(EY359361) CAWZ6388.fwd CAWZ Helobdella robusta Primary Late... 36 0.16 3
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 44 0.16 7
(BH615141) BMBAC306C01T7_BaNG Brugia malayi Genomic Bac Libr... 46 0.17 2
(EY306125) CAWX19748.fwd CAWX Helobdella robusta Primary Ear... 38 0.17 3
(BI213726) RE19210.5prime RE Drosophila melanogaster normali... 36 0.18 3
(BJ422869) Dictyostelium discoideum cDNA clone:ddv47e09, 5' ... 36 0.19 3
(AF045453) Dictyostelium discoideum protein kinase YakA (yak... 34 0.19 4
(BM371389) EBma08_SQ002_I19_R maternal, 28 DPA, no treatment... 34 0.19 3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 0.21 9
(C93684) Dictyostelium discoideum slug cDNA, clone SSL603. 40 0.21 2
(FC536686) CBPC4854.rev CBPC Thalassiosira pseudonana Temper... 34 0.21 3
(EH013558) USDA-FP_186347 Lysiphlebus testaceipes adult whol... 32 0.22 4
(EB324296) CNSN01-F-102315-501 Normalized CNS library (juven... 38 0.22 3
(CB832769) USDA-FP_100568 Adult Alate Brown Citrus Aphid Tox... 38 0.22 3
(EL884351) IP15661.3prime IP Drosophila melanogaster iPCR Am... 36 0.23 3
(AM397324) Simian immunodeficiency virus - mac proviral part... 38 0.24 3
(U66913) Dictyostelium discoideum ORF DG1040 gene, partial cds. 40 0.25 2
(CQ607976) Sequence 35734 from Patent WO0171042. 38 0.27 3
(BW276588) Ciona intestinalis cDNA, clone:cign075p07, 5' end... 40 0.27 2
(EJ299499) 1095390003596 Global-Ocean-Sampling_GS-27-01-01-1... 36 0.27 3
(AC128356) Rattus norvegicus clone CH230-146I15, WORKING DRA... 38 0.28 2
(AC107536) Rattus norvegicus clone CH230-211L16, *** SEQUENC... 38 0.28 2
(AC127717) Rattus norvegicus clone CH230-36F15, WORKING DRAF... 38 0.28 2
(AC130002) Rattus norvegicus clone CH230-306F19, *** SEQUENC... 38 0.28 2
(AC119704) Rattus norvegicus clone CH230-509F16, WORKING DRA... 38 0.28 2
(AV968116) Ciona intestinalis cDNA, clone:cilv14i24, 5' end,... 40 0.29 2
(EY324720) CAWY10451.rev CAWY Helobdella robusta Subtracted ... 38 0.29 3
(FF704849) XABT112722.fwd Gateway compatible cien cDNA libra... 40 0.30 2
(AU033655) Dictyostelium discoideum slug cDNA, clone SLB274. 32 0.30 3
(CU556410) Spc_23YH17 cDNA clone of Developmental Stages Lib... 38 0.30 2
(FK067393) XABT128290.b1 Gateway compatible cien cDNA librar... 40 0.31 2
(BW430895) Ciona intestinalis cDNA, clone:cijv007g16, 5'end,... 40 0.31 2
(ER714365) SB_BBc33-P13.R SB_BBc Sorghum bicolor genomic 3',... 40 0.31 2
(EH013611) USDA-FP_186394 Lysiphlebus testaceipes adult whol... 36 0.31 2
(FF776299) XABT76720.fwd Gateway compatible cien cDNA librar... 40 0.31 2
(FK045997) XABT115033.b1 Gateway compatible cien cDNA librar... 40 0.32 2
(FF726467) XABT42081.fwd Gateway compatible cien cDNA librar... 40 0.32 2
(DQ121098) Hucho taimen clone ZA-90 microsatellite sequence. 36 0.32 3
(FF795176) XABT89543.fwd Gateway compatible cien cDNA librar... 40 0.33 2
(DH470379) Monosiga ovata DNA, fosmid clone: MOF-015L11, gen... 38 0.34 2
(EY330956) CAWY3848.rev CAWY Helobdella robusta Subtracted E... 42 0.34 2
(FF710942) XABT31421.fwd Gateway compatible cien cDNA librar... 40 0.34 2
(BJ377556) Dictyostelium discoideum cDNA clone:ddc24d05, 3' ... 34 0.34 3
(BJ365412) Dictyostelium discoideum cDNA clone:ddc35e09, 5' ... 36 0.35 3
(EY362005) CAWZ8020.fwd CAWZ Helobdella robusta Primary Late... 34 0.36 2
(EY360454) CAWZ7128.fwd CAWZ Helobdella robusta Primary Late... 46 0.36 2
(CZ291719) cp77c07.r Candida parapsilosis Random Genomic Lib... 34 0.36 2
(CZ281033) cp14g01.f Candida parapsilosis Random Genomic Lib... 34 0.36 2
(CZ286776) cp48h05.r Candida parapsilosis Random Genomic Lib... 34 0.36 2
(EY321387) CAWX7872.fwd CAWX Helobdella robusta Primary Earl... 34 0.36 2
(DQ120986) Hucho taimen clone ZB-41 microsatellite sequence. 42 0.38 2
(FE260308) CAZN834.fwd CAZN Naegleria gruberi Flagellate Sta... 44 0.38 2
(AK286684) Glycine max cDNA, clone: GMFL01-34-F10. 40 0.40 3
(AU071982) Dictyostelium discoideum slug cDNA, clone SSD102. 44 0.40 2
(BB935687) Trifolium pratense cDNA clone:RCC08514. 36 0.41 2
(AM461349) Vitis vinifera contig VV78X244708.13, whole genom... 44 0.41 2
(AJ003161) Laminaria digitata DNA, simple tandem repeat Ld2-... 36 0.42 2
(EY314785) CAWX25698.fwd CAWX Helobdella robusta Primary Ear... 38 0.43 3
(X16522) Dictyostelium discoiedeum AAC-rich mRNA (AAC11). 36 0.44 3
(EX849769) CBNC8106.fwd CBNC Phycomyces blakesleeanus NRRL15... 36 0.47 3
(DE236681) Trifolium pratense DNA, clone:RCG32231. 34 0.48 3
(EY323768) CAWX9187.fwd CAWX Helobdella robusta Primary Earl... 34 0.49 3
(EY324721) CAWY10451.fwd CAWY Helobdella robusta Subtracted ... 38 0.49 3
(BX000460) Zebrafish DNA sequence from clone CH211-15E22 in ... 48 0.49 1
(AC181766) Strongylocentrotus purpuratus clone R3-1035N12, W... 48 0.49 1
(ER819154) PPTC520TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.49 1
(CR056470) Forward strand read from insert in 5'HPRT inserti... 48 0.49 1
(AU285010) Dictyostelium discoideum gamete cDNA clone:FC-BT0... 48 0.49 1
(AU284976) Dictyostelium discoideum gamete cDNA clone:FC-BS0... 48 0.49 1
(DR954084) EST1145623 Aquilegia cDNA library Aquilegia formo... 48 0.49 1
(BJ401650) Dictyostelium discoideum cDNA clone:dds23o23, 3' ... 44 0.50 2
(BJ402128) Dictyostelium discoideum cDNA clone:dds20g16, 3' ... 44 0.50 2
(Y17615) Lactuca sativa SSR microsatellite sequence, clone 2... 36 0.50 2
(BJ353321) Dictyostelium discoideum cDNA clone:dda49b20, 3' ... 32 0.51 3
(EU234060) Serolis paradoxa microsatellite Spa-D001 sequence. 36 0.51 3
(EY343471) CAWZ12514.fwd CAWZ Helobdella robusta Primary Lat... 38 0.52 3
(EY297160) CAWX13208.fwd CAWX Helobdella robusta Primary Ear... 34 0.57 3
(EY312152) CAWX23861.fwd CAWX Helobdella robusta Primary Ear... 38 0.59 3
(EY295643) CAWX12366.fwd CAWX Helobdella robusta Primary Ear... 38 0.61 3
(EY305581) CAWX19448.fwd CAWX Helobdella robusta Primary Ear... 34 0.62 3
(AJ429164) Polycentropus flavomaculatus microsatellite DNA, ... 32 0.63 3
(DE217304) Trifolium pratense DNA, clone:RCG07673. 36 0.64 2
(BJ337270) Dictyostelium discoideum cDNA clone:dda56i20, 5' ... 36 0.64 3
(EY306076) CAWX19721.fwd CAWX Helobdella robusta Primary Ear... 34 0.64 3
(BJ360439) Dictyostelium discoideum cDNA clone:ddc6i05, 5' e... 34 0.66 3
(DK355768) Drosophila simulans mRNA, adult full-length cDNA ... 38 0.68 2
(EY317940) CAWX595.fwd CAWX Helobdella robusta Primary Early... 38 0.68 3
(ED142582) AUAC-aaz69e03.b1 Ascaris suum whole genome shotgu... 36 0.68 2
(DE228022) Trifolium pratense DNA, clone:RCG20807. 36 0.69 2
(DK422132) Drosophila simulans mRNA, adult full-length cDNA ... 38 0.69 2
(EC688922) JLE00004774 Jakoba libera Company (STANDARD) Jako... 36 0.69 3
(BJ332528) Dictyostelium discoideum cDNA clone:dda39n09, 5' ... 36 0.69 3
(DQ121071) Hucho taimen clone ZA-64 microsatellite sequence. 36 0.70 3
(DE217041) Trifolium pratense DNA, clone:RCG07190. 36 0.72 2
(BJ332967) Dictyostelium discoideum cDNA clone:dda41c01, 5' ... 36 0.73 3
(DQ249401) Daphnia pulex microsatellite Dp840 sequence. 32 0.74 3
(AF474377) Dictyostelium discoideum Ras GTP exchange factor ... 44 0.75 3
(EA239309) Sequence 103624 from patent US 7214786. 36 0.77 2
(BE424082) WHE0068_G05_M10ZS Wheat endosperm cDNA library Tr... 36 0.77 2
(BJ402606) Dictyostelium discoideum cDNA clone:dds17a13, 3' ... 44 0.79 2
(BJ410423) Dictyostelium discoideum cDNA clone:ddv12a15, 5' ... 32 0.79 3
(ET458107) fcg2x.pk719.h10.f C. graminicola genomic sequence... 36 0.80 3
(CR925728) Zebrafish DNA sequence from clone DKEY-96G2 in li... 38 0.81 5
(DQ182570) Ictalurus punctatus CC chemokine SCYA114B gene, c... 46 0.81 2
(BJ397920) Dictyostelium discoideum cDNA clone:dds10o03, 3' ... 44 0.81 2
(BJ360253) Dictyostelium discoideum cDNA clone:ddc5m02, 5' e... 44 0.81 2
(CB014246) As_tgz_76E11_SKPL Ascaris suum adult male testis ... 32 0.82 3
(CB014640) As_tgz_83C08_SKPL Ascaris suum adult male testis ... 32 0.82 3
(CB014014) As_tgz_73B08_SKPL Ascaris suum adult male testis ... 32 0.83 3
(C84086) Dictyostelium discoideum slug cDNA, clone SSC742. 44 0.84 2
(DN607099) EST02310 Sporophyte cDNA Library Porphyra haitane... 36 0.85 2
(DE225190) Trifolium pratense DNA, clone:RCG17252. 36 0.85 2
(BF169335) As_tgz_24A03_SKPL Ascaris suum adult male testis ... 32 0.86 3
(EJ889334) 1093018433732 Global-Ocean-Sampling_GS-30-02-01-1... 36 0.88 2
(AU037762) Dictyostelium discoideum slug cDNA, clone SSE262. 44 0.89 2
(BJ325157) Dictyostelium discoideum cDNA clone:dda13b05, 5' ... 44 0.91 2
(BJ399584) Dictyostelium discoideum cDNA clone:dds6i17, 3' e... 44 0.92 2
(BJ390557) Dictyostelium discoideum cDNA clone:dds22i22, 5' ... 44 0.95 2
(AB009080) Dictyostelium discoideum gene for TRFA, complete ... 42 0.98 3
(C91150) Dictyostelium discoideum slug cDNA, clone SSJ688. 44 0.98 2
(AU051912) Dictyostelium discoideum slug cDNA, clone SSC382. 44 0.99 2
(CX873960) py128 PY Sporophyte cDNA Library Porphyra yezoens... 36 1.00 2
(AU062100) Dictyostelium discoideum slug cDNA, clone SLH578. 44 1.0 2
(BJ389881) Dictyostelium discoideum cDNA clone:dds20n08, 5' ... 44 1.0 2
(B67199) CpG0015B CpIOWAgDNA1 Cryptosporidium parvum genomic... 30 1.0 4
(AC106918) Rattus norvegicus clone CH230-60H6, *** SEQUENCIN... 36 1.0 2
(AC128575) Rattus norvegicus clone CH230-149J17, WORKING DRA... 36 1.0 2
(AC103439) Rattus norvegicus clone CH230-161I2, WORKING DRAF... 36 1.0 2
(CR536604) Zebrafish DNA sequence from clone DKEY-57A22 in l... 32 1.0 2
(EY304411) CAWX17640.fwd CAWX Helobdella robusta Primary Ear... 40 1.0 2
(EY316590) CAWX26711.fwd CAWX Helobdella robusta Primary Ear... 36 1.0 2
(AG190659) Pan troglodytes DNA, clone: RP43-066D19.TJ. 34 1.0 3
(AC181276) Strongylocentrotus purpuratus clone R3-115J23, WO... 34 1.0 2
(BE195101) HVSMEh0088E19f Hordeum vulgare 5-45 DAP spike EST... 32 1.1 3
(AC180276) Strongylocentrotus purpuratus clone R3-3123O18, W... 34 1.1 2
(EX817612) CBNA5660.rev CBNA Phycomyces blakesleeanus NRRL15... 44 1.1 2
(BW037261) Ciona intestinalis cDNA, clone:cibd033c23, 5' end... 42 1.1 2
(BJ392024) Dictyostelium discoideum cDNA clone:dds26h04, 5' ... 32 1.1 3
(AC091017) Homo sapiens chromosome 17 clone RP11-64A4 map 17... 32 1.1 2
(BJ402793) Dictyostelium discoideum cDNA clone:dds18e09, 3' ... 44 1.1 2
(BJ401442) Dictyostelium discoideum cDNA clone:dds23c09, 3' ... 44 1.1 2
(EX814418) CBNA4023.rev CBNA Phycomyces blakesleeanus NRRL15... 44 1.2 2
(EH009807) USDA-FP_182968 Lysiphlebus testaceipes adult whol... 44 1.2 2
(DT609848) ACAG-aaa80c03.g1 Hydra_EST_UCI-9 Hydra magnipapil... 34 1.2 3
(CU550677) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.2 6
(AC020085) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 40 1.2 2
(EY373088) CAXA14368.fwd CAXA Helobdella robusta Subtracted ... 42 1.2 2
(EY336580) CAWY7779.fwd CAWY Helobdella robusta Subtracted E... 36 1.2 2
(EY331562) CAWY4258.fwd CAWY Helobdella robusta Subtracted E... 44 1.2 2
(EY327202) CAWY12459.rev CAWY Helobdella robusta Subtracted ... 44 1.2 2
(EB603376) AGENCOURT_55024155 D. mojavensis EST Drosophila m... 36 1.2 2
(DH478550) Monosiga ovata DNA, fosmid clone: MOF-030A04, gen... 40 1.2 2
(CU556086) Spc_24YM20 cDNA clone of Developmental Stages Lib... 36 1.2 2
(EY342933) CAWZ12199.fwd CAWZ Helobdella robusta Primary Lat... 42 1.2 2
(FF701706) XABT110645.fwd Gateway compatible cien cDNA libra... 42 1.2 2
(CX874151) py365 PY Sporophyte cDNA Library Porphyra yezoens... 42 1.2 2
(EY330994) CAWY3871.fwd CAWY Helobdella robusta Subtracted E... 42 1.3 2
(EY300033) CAWX14797.rev CAWX Helobdella robusta Primary Ear... 36 1.3 3
(EY316855) CAWX26857.fwd CAWX Helobdella robusta Primary Ear... 36 1.3 2
(FF735783) XABT49166.fwd Gateway compatible cien cDNA librar... 42 1.3 2
(EY323226) CAWX8881.fwd CAWX Helobdella robusta Primary Earl... 38 1.3 2
(BJ369392) Dictyostelium discoideum cDNA clone:ddc50l09, 5' ... 30 1.3 3
(EY328003) CAWY13012.fwd CAWY Helobdella robusta Subtracted ... 40 1.3 2
(EY379540) CAXA17851.fwd CAXA Helobdella robusta Subtracted ... 42 1.3 2
(BJ334294) Dictyostelium discoideum cDNA clone:dda45f23, 5' ... 34 1.3 3
(DY912506) CHAX7803.b1_F07.ab1 CHA(XYZ) common wild sunflowe... 36 1.3 2
(BJ337850) Dictyostelium discoideum cDNA clone:dda59o03, 5' ... 34 1.3 3
(EY300355) CAWX14975.fwd CAWX Helobdella robusta Primary Ear... 36 1.3 2
(AY160100) Dictyostelium discoideum nucleotide exchange fact... 44 1.3 3
(BG263012) WHE0939_G09_N17ZS Wheat 5-15 DAP spike cDNA libra... 32 1.4 3
(ED999843) MUGQ_CH252P161I04T7_CN190_008 CHORI-252 Vervet Mo... 34 1.4 2
(BJ366550) Dictyostelium discoideum cDNA clone:ddc39k07, 5' ... 32 1.4 3
(ET601453) fcg3x.222350j04.f C. graminicola genomic sequence... 34 1.4 2
(CX874253) py482 PY Sporophyte cDNA Library Porphyra yezoens... 34 1.4 2
(DY888587) CeleSEQ5720 Cunninghamella elegans pBluescript (E... 42 1.4 2
(EB560597) AGENCOURT_51868127 D. virilis EST Drosophila viri... 34 1.4 2
(EJ847238) 1093017860566 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.4 2
(EY324512) CAWX9977.fwd CAWX Helobdella robusta Primary Earl... 40 1.4 2
(EJ931265) 1093018808010 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.4 2
(ET567806) fcg3x.231050o05 C. graminicola genomic sequence G... 36 1.4 3
(EY497130) CBBP3362.rev CBBP Hirudo medicinalis hermaphrodit... 36 1.4 3
(EY383457) CAXA4615.fwd CAXA Helobdella robusta Subtracted L... 42 1.4 2
(EY385662) CAXA5810.fwd CAXA Helobdella robusta Subtracted L... 42 1.4 2
(EY333371) CAWY5646.fwd CAWY Helobdella robusta Subtracted E... 38 1.4 3
(EJ283656) 1095368005517 Global-Ocean-Sampling_GS-27-01-01-1... 42 1.4 2
(FK862559) 0000099973K2 D. serrata mRNA from different devel... 38 1.5 2
(EJ726285) 1092959506383 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.5 2
(EY346411) CAWZ15042.fwd CAWZ Helobdella robusta Primary Lat... 38 1.6 3
(AF338654) Aedes aegypti clone CAA 1/82 microsatellite seque... 40 1.6 2
(DR916216) EST1107755 Aquilegia cDNA library Aquilegia formo... 36 1.6 3
(FP016102) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.6 5
(BJ385595) Dictyostelium discoideum cDNA clone:ddc55a16, 3' ... 36 1.7 3
(AU265854) Dictyostelium discoideum vegetative cDNA clone:VS... 32 1.7 3
(BE604779) WHE1713-1716_A14_A14ZS Wheat heat stressed spike ... 32 1.7 3
(EY364569) CAWZ9541.fwd CAWZ Helobdella robusta Primary Late... 36 1.7 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 1.8 9
(EY327603) CAWY12740.fwd CAWY Helobdella robusta Subtracted ... 36 1.8 3
(DH487330) Monosiga ovata DNA, fosmid clone: MOF-045A14, gen... 32 1.9 3
(DR921513) EST1113052 Aquilegia cDNA library Aquilegia formo... 36 1.9 3
(DT761078) EST1194927 Aquilegia cDNA library Aquilegia formo... 36 1.9 3
(DE224193) Trifolium pratense DNA, clone:RCG16003. 36 1.9 2
(ET593322) fcg3x.220250c08.f C. graminicola genomic sequence... 36 1.9 3
(EU862134) Megalagrion eudytum clone MegEu13 microsatellite ... 40 1.9 2
(BP024203) Ciona intestinalis cDNA, clone:cits32d23, 5' end,... 36 1.9 2
(BX000480) Zebrafish DNA sequence from clone DKEY-14C5 in li... 46 2.0 1
(AC136699) Mus musculus chromosome 9, clone RP23-18E24, comp... 46 2.0 1
(EU124737) Solanum lycopersicum chromosome 3 clone C03HBa005... 46 2.0 1
(AR554704) Sequence 9835 from patent US 6747137. 46 2.0 1
(AC161796) Mus musculus chromosome 7 clone RP23-135G7 map 7,... 46 2.0 1
(AC132673) Rattus norvegicus clone CH230-139M10, *** SEQUENC... 46 2.0 1
(CT573292) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1
(AC232029) Solanum tuberosum strain Diploid genotype RH89-03... 46 2.0 1
(AC181358) Strongylocentrotus purpuratus clone R3-113L12, WO... 46 2.0 1
(AC180430) Strongylocentrotus purpuratus clone R3-3103K18, W... 46 2.0 1
(ED501592) ix56d05.b1 Sub-library of four pooled sorghum BAC... 46 2.0 1
(AL205276) Tetraodon nigroviridis genome survey sequence PUC... 46 2.0 1
(CW122148) 104_500_11110460_116_34668_068 Sorghum methylatio... 46 2.0 1
(DW703977) EST027458 Trichophyton rubrum cDNA library 7 Tric... 46 2.0 1
(FK718660) pl_433-520-G2 Ilyanassa (snail) 0-48h Ilyanassa o... 46 2.0 1
(FK713216) pl_069-H7 Ilyanassa (snail) 0-48h Ilyanassa obsol... 46 2.0 1
(FE663830) UAHYP_20C_R_C12 UaHyphae_ARS Uromyces appendicula... 46 2.0 1
(FE663750) UAHYP_20C_F_C12 UaHyphae_ARS Uromyces appendicula... 46 2.0 1
(FD045177) CBPO13282.g1 CBPO: Normalized channel catfish cDN... 46 2.0 1
(EY315439) CAWX26052.fwd CAWX Helobdella robusta Primary Ear... 32 2.0 3
(CD128378) MF1-0018U-V054-B06-U.B MF1-0018 Schistosoma manso... 42 2.0 2
(DL131050) Bax-responsive genes for drug target identificati... 34 2.0 3
(AX536810) Sequence 411 from Patent WO02064766. 34 2.0 3
(AR941610) Sequence 411 from patent US 7101990. 34 2.0 3
(CL643163) CH213-43M01.SP6 CH213 Gasterosteus aculeatus geno... 38 2.0 2
(BJ409946) Dictyostelium discoideum cDNA clone:ddv10l14, 5' ... 32 2.0 3
(BP019545) Ciona intestinalis cDNA, clone:rcits32d23, 3' end... 36 2.0 2
(DQ121029) Hucho taimen clone ZA-27 microsatellite sequence. 30 2.0 3
(CD128443) MF1-0018U-V054-H08-U.B MF1-0018 Schistosoma manso... 42 2.1 2
(ET621512) fcg3x.231950a12.f C. graminicola genomic sequence... 36 2.1 3
(AC149293) Medicago truncatula clone mth2-78c5, complete seq... 44 2.2 2
(BJ236736) Triticum aestivum cDNA clone:whe22o04, 5' end, si... 32 2.2 3
(FK719034) pl_015-A8 Ilyanassa (snail) 0-48h Ilyanassa obsol... 32 2.3 3
(AY428796) Dictyostelium discoideum DIF insensitive mutant A... 40 2.3 3
(BQ587699) E012340-024-010-K21-SP6 MPIZ-ADIS-024-leaf Beta v... 36 2.3 3
(BQ587282) E012340w-024-010-K21-SP6 MPIZ-ADIS-024-leaf Beta ... 36 2.3 3
(BG604863) WHE0944_C02_F04ZS Wheat 5-15 DAP spike cDNA libra... 32 2.3 3
(AC202515) Medicago truncatula clone mth2-61l2, WORKING DRAF... 44 2.3 3
(AY949185) Aphidius transcaspicus clone At016 microsatellite... 34 2.4 2
(DR917644) EST1109183 Aquilegia cDNA library Aquilegia formo... 36 2.4 3
(GD224313) G1045P378RH5.T1 Aplysia californica Pooled Normal... 36 2.4 2
(DQ120980) Hucho taimen clone ZB-35 microsatellite sequence. 32 2.4 3
(GD267159) USDA-FP_198913 Asian citrus psyllid testes (Hemip... 32 2.5 3
(CK895469) SGP157986 Atlantic salmon Swimbladder cDNA librar... 30 2.5 3
(AF361947) Dictyostelium discoideum SgcA (sgcA) mRNA, comple... 44 2.6 3
(BF292921) WHE2166_D10_H20ZS Triticum turgidum L. var. durum... 32 2.6 3
(DE217354) Trifolium pratense DNA, clone:RCG07767. 40 2.6 2
(AR548317) Sequence 3448 from patent US 6747137. 42 2.7 2
(CV065158) WNEL1a4 Wheat EST endosperm library Triticum aest... 32 2.7 3
(AR550039) Sequence 5170 from patent US 6747137. 32 2.7 4
(AC172714) Atelerix albiventris clone LB4-266D19, WORKING DR... 36 2.7 5
(BJ232377) Triticum aestivum cDNA clone:whe12e16, 5' end, si... 32 2.7 3
(BE606547) WHE0903_G04_N07ZS Wheat 5-15 DAP spike cDNA libra... 32 2.8 3
(BT024217) Drosophila melanogaster RE19210 full insert cDNA. 36 2.8 3
(CD895442) G174.001N17F010514 G174 Triticum aestivum cDNA cl... 32 2.9 3
(CD895444) G174.001N19F010514 G174 Triticum aestivum cDNA cl... 32 2.9 3
(BJ329388) Dictyostelium discoideum cDNA clone:dda24f19, 5' ... 42 2.9 2
(EY371151) CAXA13292.rev CAXA Helobdella robusta Subtracted ... 42 3.0 2
(DE217231) Trifolium pratense DNA, clone:RCG07542. 42 3.0 2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 36 3.0 4
(BF473454) WHE0924_F03_L06ZS Wheat 5-15 DAP spike cDNA libra... 32 3.0 3
(FE274757) m748-1.seq differentially expressed sequences in ... 32 3.0 3
(AU052948) Dictyostelium discoideum slug cDNA, clone SLF367. 32 3.0 3
(CR751225) Zebrafish DNA sequence from clone DKEY-246I6 in l... 44 3.0 2
(CJ527234) Triticum aestivum cDNA clone rwhdp3c09 3', Y.Ogih... 32 3.0 3
(BE499464) WHE0974_B10_D20ZS Wheat pre-anthesis spike cDNA l... 32 3.1 3
(DH296799) Oryzias latipes Fosmid clone:GOLWFno642_h09, forw... 38 3.1 2
(AC116918) Dictyostelium discoideum chromosome 2 map 6143698... 40 3.2 3
(AU187824) Porphyra yezoensis cDNA, clone:PF017h03_r, 5'end. 34 3.2 2
(EX861306) CBNF5910.fwd CBNF Phycomyces blakesleeanus NRRL15... 30 3.2 3
(BJ381507) Dictyostelium discoideum cDNA clone:ddc41b21, 3' ... 42 3.3 2
(BV231955) S233P6360RD5.T0 LabradorRetriever Canis familiari... 32 3.3 3
(CJ528519) Triticum aestivum cDNA clone rwhdp7l17 3', Y.Ogih... 32 3.3 3
(BW204926) Ciona intestinalis cDNA, clone:cicl089e05, 5' end... 36 3.3 2
(CJ526887) Triticum aestivum cDNA clone rwhdp20p16 3', Y.Ogi... 32 3.4 3
(CD909608) G468.113B03F010820 G468 Triticum aestivum cDNA cl... 32 3.4 3
(CD900325) G356.001D09F010705 G356 Triticum aestivum cDNA cl... 32 3.4 3
(BJ386124) Dictyostelium discoideum cDNA clone:ddc57a08, 3' ... 32 3.4 3
(CJ523482) Triticum aestivum cDNA clone rwhdp10b09 3', Y.Ogi... 32 3.4 3
(DQ120998) Hucho taimen clone ZB-8 microsatellite sequence. 32 3.4 3
(BJ328723) Dictyostelium discoideum cDNA clone:dda29p01, 5' ... 32 3.5 3
(BJ234035) Triticum aestivum cDNA clone:whe8e09, 5' end, sin... 32 3.5 3
(BJ362912) Dictyostelium discoideum cDNA clone:ddc24d05, 5' ... 42 3.5 2
(AC117148) Rattus norvegicus clone CH230-94C16, *** SEQUENCI... 34 3.5 2
(AC107130) Rattus norvegicus clone CH230-37N4, *** SEQUENCIN... 34 3.5 2
(BJ369186) Dictyostelium discoideum cDNA clone:ddc49k17, 5' ... 36 3.5 2
(CU467587) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.6 2
(DQ121015) Hucho taimen clone ZA-12b microsatellite sequence. 42 3.6 2
(AC095742) Rattus norvegicus clone CH230-3B2, *** SEQUENCING... 34 3.6 2
(BJ446017) Dictyostelium discoideum cDNA clone:ddv61k07, 3' ... 34 3.6 3
(EY336671) CAWY7839.fwd CAWY Helobdella robusta Subtracted E... 42 3.6 2
(AC097830) Rattus norvegicus clone CH230-80I3, *** SEQUENCIN... 34 3.6 2
(AC180829) Strongylocentrotus purpuratus clone R3-3071E19, W... 34 3.7 2
(EH016250) USDA-FP_188770 Lysiphlebus testaceipes adult whol... 42 3.7 2
(AC126106) Rattus norvegicus clone CH230-26O4, *** SEQUENCIN... 34 3.7 2
(AC116069) Rattus norvegicus clone CH230-209F3, *** SEQUENCI... 34 3.7 2
(AM852717) Venerupis (Ruditapes) decussatus EST, 5' end sequ... 38 3.7 2
(AC098750) Rattus norvegicus clone CH230-54E23, *** SEQUENCI... 34 3.7 2
(AC173985) Strongylocentrotus purpuratus clone R3-1004F15, *... 40 3.7 4
(AC111253) Rattus norvegicus clone CH230-19L22, *** SEQUENCI... 34 3.7 2
(AC158509) Pan troglodytes clone rp43-71i19, WORKING DRAFT S... 34 3.7 2
(CU638862) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.7 2
(AC094719) Rattus norvegicus clone CH230-5M11, *** SEQUENCIN... 34 3.7 2
(AC044860) Homo sapiens chromosome 15, clone RP11-561C5, com... 34 3.7 2
(AC098937) Rattus norvegicus clone CH230-6P2, WORKING DRAFT ... 34 3.7 2
(AC096697) Rattus norvegicus clone CH230-147B1, WORKING DRAF... 34 3.7 2
(CJ636938) Triticum aestivum cDNA clone whdp7l17 5', Y.Ogiha... 32 3.7 3
(BJ235519) Triticum aestivum cDNA clone:whe17a23, 5' end, si... 32 3.7 3
(AC094806) Rattus norvegicus clone CH230-5E5, WORKING DRAFT ... 34 3.7 2
(AC111919) Rattus norvegicus clone CH230-36N4, *** SEQUENCIN... 34 3.7 2
(AC117094) Rattus norvegicus clone CH230-271B16, WORKING DRA... 34 3.7 2
(AC174960) Pan troglodytes chromosome UNKNOWN clone CH251-81... 34 3.7 2
(AC133776) Rattus norvegicus clone CH230-189J5, *** SEQUENCI... 34 3.7 2
(EY329044) CAWY2038.rev CAWY Helobdella robusta Subtracted E... 42 3.7 2
(CR457461) Zebrafish DNA sequence from clone DKEY-23O10 in l... 34 3.7 2
(AC130618) Rattus norvegicus clone CH230-198A11, *** SEQUENC... 34 3.7 2
(AC214903) Pan troglodytes clone rp43-116l9, WORKING DRAFT S... 34 3.7 2
(AC131040) Mus musculus chromosome 5 clone RP23-393O14 map 5... 34 3.7 2
(AC012361) Homo sapiens BAC clone RP11-348P18 from 2, comple... 34 3.7 2
(AC118214) Mus musculus chromosome 5, clone RP24-334D6, comp... 34 3.7 2
(AC130990) Rattus norvegicus clone CH230-342J24, WORKING DRA... 34 3.7 2
(AC115666) Rattus norvegicus clone CH230-261G15, WORKING DRA... 34 3.7 2
(AC112905) Rattus norvegicus clone CH230-179F3, WORKING DRAF... 34 3.7 2
(CU407287) Pig DNA sequence from clone CH242-512G20 on chrom... 34 3.7 2
(AC128290) Rattus norvegicus clone CH230-303N2, WORKING DRAF... 34 3.7 2
(AC180126) Strongylocentrotus purpuratus clone R3-4005M24, W... 34 3.7 2
(AC068845) Homo sapiens chromosome 19 clone RP11-737I1 map 1... 34 3.7 2
(DE053035) Oryzias latipes DNA, clone: ola1-022L02.F, genomi... 42 3.7 2
(BJ360997) Dictyostelium discoideum cDNA clone:ddc9a08, 5' e... 42 3.7 2
(AC031977) Homo sapiens chromosome 1 clone RP11-288O18, WORK... 34 3.7 2
(AC198295) Macaca mulatta chromosome 19 clone CH250-263C18, ... 34 3.7 2
(CU855873) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.7 2
(CU694837) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.7 2
(AC128250) Rattus norvegicus clone CH230-524A1, *** SEQUENCI... 34 3.7 2
(AC023124) Homo sapiens chromosome 2 clone RP11-310O5, WORKI... 34 3.7 2
(AC009371) Drosophila melanogaster 3L BAC RP98-44K7 (Roswell... 34 3.8 2
(AC010054) Drosophila melanogaster 3L BAC RP98-15E10 (Roswel... 34 3.8 2
(AC105324) Mus musculus chromosome 15, clone RP24-311E18, co... 34 3.8 2
(AC176892) Strongylocentrotus purpuratus clone R3-31J6, WORK... 34 3.8 2
(AL583850) Human DNA sequence from clone RP11-430G6 on chrom... 34 3.8 2
(BE590864) WHE0855_C04_E07ZS Wheat 20-45 DAP spike cDNA libr... 32 3.8 3
(AC139390) Rattus norvegicus clone CH230-84B5, *** SEQUENCIN... 34 3.8 2
(AC011492) Homo sapiens chromosome 19 clone CTB-187L3, compl... 34 3.8 2
(AC177193) Strongylocentrotus purpuratus clone R3-1034P02, W... 34 3.8 2
(AC195105) Macaca mulatta clone CH250-443O19, WORKING DRAFT ... 34 3.8 2
(CU856685) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.8 2
(BJ240185) Triticum aestivum cDNA clone:whe9j19, 3' end, sin... 32 3.8 3
(BW309890) Ciona intestinalis cDNA, clone:ciht005k10, 5' end... 36 3.8 2
(AC174738) Strongylocentrotus purpuratus clone R3-1030P16, W... 34 3.8 2
(AC232106) Solanum tuberosum strain Diploid genotype RH89-03... 34 3.8 2
(CJ524959) Triticum aestivum cDNA clone rwhdp15c04 3', Y.Ogi... 32 3.9 3
(EY296389) CAWX12779.fwd CAWX Helobdella robusta Primary Ear... 36 3.9 2
(AL021889) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 34 3.9 2
(AC094507) Rattus norvegicus 1 BAC CH230-4E15 (Children's Ho... 34 3.9 2
(AC006365) Homo sapiens BAC clone GS1-587J1 from 7, complete... 34 3.9 2
(BX842624) Neurospora crassa DNA linkage group I BAC clone B... 34 3.9 2
(AC178121) Strongylocentrotus purpuratus clone R3-3074K07, W... 34 3.9 2
(BJ236489) Triticum aestivum cDNA clone:whe21o04, 5' end, si... 32 3.9 3
(BJ241747) Triticum aestivum cDNA clone:whe21o04, 3' end, si... 32 3.9 3
(BJ416350) Dictyostelium discoideum cDNA clone:ddv25k22, 5' ... 40 4.0 2
(AC019594) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 34 4.0 2
(AF241823) Dictyostelium discoideum prespore protein MF12 ge... 40 4.0 3
(AC182765) Pan troglodytes chromosome 2 clone CH251-688L3, W... 34 4.0 2
(AY160094) Dictyostelium discoideum nucleotide exchange fact... 34 4.0 3
(BW328483) Ciona intestinalis cDNA, clone:cidg830n05, 5'end,... 36 4.0 2
(AF441536) Pinus taeda PtTX3125 microsatellite sequence. 32 4.0 3
(BB624565) Mus musculus 16 days embryo lung cDNA, RIKEN full... 36 4.0 2
(BQ805391) WHE3566_D04_H08ZS Wheat developing grains cDNA li... 32 4.0 3
(Y13097) Dictyostelium discoideum dstA mRNA for STATa protei... 44 4.0 2
(BJ348516) Dictyostelium discoideum cDNA clone:dda33p11, 3' ... 42 4.1 2
(AD000091) Homo sapiens DNA from chromosome 19p13.1 cosmid f... 34 4.1 2
(CA840472) MCT037G10_174039 Ice plant Lambda Uni-Zap XR expr... 40 4.1 2
(DL173710) Methods for Identifying the Target of a Compound ... 32 4.1 3
(AX489270) Sequence 6570 from Patent WO02053728. 32 4.1 3
(BJ337138) Dictyostelium discoideum cDNA clone:dda56l08, 5' ... 34 4.1 3
(EY380828) CAXA3099.rev CAXA Helobdella robusta Subtracted L... 42 4.1 2
(EY334267) CAWY6250.rev CAWY Helobdella robusta Subtracted E... 34 4.2 3
(AF260580) Mus musculus disabled-2 p96 (Dab2) gene, exons 2 ... 34 4.2 2
(BJ238025) Triticum aestivum cDNA clone:whe12e16, 3' end, si... 32 4.2 3
(AA444968) vg57f09.r1 Beddington mouse embryonic region Mus ... 32 4.2 3
(AL391150) Arabidopsis thaliana DNA chromosome 5, BAC clone ... 34 4.2 2
(BK003873) TPA_inf: Drosophila melanogaster HDC06910 (HDC069... 40 4.2 2
(CJ633460) Triticum aestivum cDNA clone whdp15c04 5', Y.Ogih... 32 4.2 3
(BJ383412) Dictyostelium discoideum cDNA clone:ddc52n21, 3' ... 34 4.2 3
(EY389539) CAXA7901.rev CAXA Helobdella robusta Subtracted L... 42 4.3 2
(M38703) Dictyostelium discoideum protein kinase (GPK2) gene... 32 4.3 3
(BJ242414) Triticum aestivum cDNA clone:whe23i15, 3' end, si... 32 4.3 3
(FF943624) CBWU76571.b1 Yutaka Satou unpublished cDNA librar... 36 4.3 2
(FF756500) XABT63454.fwd Gateway compatible cien cDNA librar... 36 4.3 2
(CB284083) DF0784 Dermatophagoides farinae cDNA library Derm... 34 4.3 3
(CD791476) EST662837 RAB Rhipicephalus appendiculatus cDNA c... 34 4.3 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 4.3 5
(CN810806) Ls_J1_17D10_SAC Lymnaea stagnalis J1 Lymnaea stag... 36 4.4 2
(DQ978340) Saccharina japonica clone H10 microsatellite sequ... 36 4.4 3
(EY325239) CAWY10801.rev CAWY Helobdella robusta Subtracted ... 42 4.4 2
(BW045343) Ciona intestinalis cDNA, clone:cibd058g13, 5' end... 36 4.4 2
(EY309413) CAWX21578.fwd CAWX Helobdella robusta Primary Ear... 44 4.4 2
(EA191804) Sequence 56119 from patent US 7214786. 32 4.4 3
(BJ238388) Triticum aestivum cDNA clone:whe1m12, 3' end, sin... 32 4.4 3
(EV273521) GLMBW37TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 40 4.4 2
(BW310209) Ciona intestinalis cDNA, clone:ciht006n04, 5' end... 36 4.4 2
(BJ239904) Triticum aestivum cDNA clone:whe8e09, 3' end, sin... 32 4.4 3
(BJ238240) Triticum aestivum cDNA clone:whe1c05, 3' end, sin... 32 4.5 3
(BW038390) Ciona intestinalis cDNA, clone:cibd036j09, 5' end... 36 4.5 2
(EY336689) CAWY7848.fwd CAWY Helobdella robusta Subtracted E... 40 4.5 2
(CJ526244) Triticum aestivum cDNA clone rwhdp19l13 3', Y.Ogi... 32 4.5 3
(CJ634745) Triticum aestivum cDNA clone whdp19l13 5', Y.Ogih... 32 4.5 3
(EF120464) Pocillopora damicornis clone PD3 microsatellite s... 32 4.6 3
(BJ238259) Triticum aestivum cDNA clone:whe1d07, 3' end, sin... 32 4.6 3
(EY302107) CAWX15963.rev CAWX Helobdella robusta Primary Ear... 42 4.6 2
(BJ239037) Triticum aestivum cDNA clone:whe4h04, 3' end, sin... 32 4.6 3
(AF168391) Arabidopsis thaliana root cap 1 (RCP1) gene, comp... 34 4.6 2
(EH738131) CNMS11611.b1_E23.ab1 CNM(LMS) spotted knapweed Ce... 38 4.6 2
(EA378472) Sequence 27295 from patent US 7314974. 34 4.6 2
(FE268718) CAZO773.fwd CAZO Naegleria gruberi Flagellate Sta... 40 4.6 2
(DY891367) CeleSEQ10033 Cunninghamella elegans pBluescript (... 38 4.6 2
(EB605212) AGENCOURT_54966155 D. mojavensis EST Drosophila m... 36 4.6 3
(FE806457) CCAG26851.g1 CCAG Petrolisthes cinctipes heart, g... 34 4.6 2
(CR812465) Zebrafish DNA sequence from clone CH211-103M11 in... 40 4.7 4
(EJ458137) 1093017977853 Global-Ocean-Sampling_GS-28-01-01-1... 36 4.7 2
(EH736896) CNMM9987.b1_E01.ab1 CNM(LMS) spotted knapweed Cen... 38 4.7 2
(BJ366304) Dictyostelium discoideum cDNA clone:ddc38c17, 5' ... 36 4.7 3
(BJ295724) Triticum aestivum cDNA clone:whsl5c15, 3' end, si... 32 4.7 3
(BW445621) Ciona intestinalis cDNA, clone:cijv422j02, 5'end,... 40 4.7 2
(EY325998) CAWY11302.fwd CAWY Helobdella robusta Subtracted ... 40 4.7 2
(S79240) Lox4=Ultrabithorax/abdominal-A homolog [Hirudo medi... 34 4.8 2
(DQ121025) Hucho taimen clone ZA-23 microsatellite sequence. 38 4.8 2
(DQ186993) Aplysia californica myomodulin gene 2 neuropeptid... 34 4.8 2
(FF902751) CBWU35302.b1 Yutaka Satou unpublished cDNA librar... 36 4.8 2
(DB915217) Idiosepius paradoxus cDNA, clone:Ip_aB_018_K14, 5... 34 4.8 3
(BJ233388) Triticum aestivum cDNA clone:whe4h04, 5' end, sin... 32 4.8 3
(AY054610) Arabidopsis thaliana putative protein (At4g17950;... 34 4.8 2
(BJ242833) Triticum aestivum cDNA clone:whe25c08, 3' end, si... 32 4.8 3
(AY070079) Arabidopsis thaliana putative glutamine-rich prot... 34 4.8 2
(AJ224119) Arabidopsis thaliana mRNA AT-hook protein 2. 34 4.8 2
(BX827649) Arabidopsis thaliana Full-length cDNA Complete se... 34 4.8 2
(BX828014) Arabidopsis thaliana Full-length cDNA Complete se... 34 4.8 2

>(C25758) Dictyostelium discoideum gamete cDNA, clone FC-AZ17.
Length = 579

Score = 569 bits (287), Expect(4) = 0.0
Identities = 287/287 (100%)
Strand = Plus / Plus


Query: 257 caactgtaccaacaaatgtaccaacgacaacaacaacagatgattctactgttaaaaata 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caactgtaccaacaaatgtaccaacgacaacaacaacagatgattctactgttaaaaata 316


Query: 317 cttctacaacaacagcaactactgcaacagaagaccatggattaaatactgcatttaatt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttctacaacaacagcaactactgcaacagaagaccatggattaaatactgcatttaatt 376


Query: 377 cttcaagtattccaatcccttcaaaattggcatcaccccttcaatcaccaaatctttcac 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttcaagtattccaatcccttcaaaattggcatcaccccttcaatcaccaaatctttcac 436


Query: 437 caaaagcatcttccgtttcaacttcaatggctgcattatcctcatcaactttagtatcaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caaaagcatcttccgtttcaacttcaatggctgcattatcctcatcaactttagtatcaa 496


Query: 497 gtaatgctaatactacaaccaccaataatcctgttttaacaactacc 543
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtaatgctaatactacaaccaccaataatcctgttttaacaactacc 543

Score = 278 bits (140), Expect(4) = 0.0
Identities = 140/140 (100%)
Strand = Plus / Plus


Query: 1 gttgataataatcaacatcaacaacaactacaacttgaacaacaagatatagataaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgataataatcaacatcaacaacaactacaacttgaacaacaagatatagataaatat 60


Query: 61 aaagcaagattggctgctttagataaaaagatacctttcccaagagaagattcattttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagcaagattggctgctttagataaaaagatacctttcccaagagaagattcattttca 120


Query: 121 actttaattttaccaactaa 140
||||||||||||||||||||
Sbjct: 121 actttaattttaccaactaa 140

Score = 54.0 bits (27), Expect(4) = 0.0
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 180 aactgtatcaaccactaatacaaatac 206
|||||||||||||||||||||||||||
Sbjct: 180 aactgtatcaaccactaatacaaatac 206

Score = 30.2 bits (15), Expect(4) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 565 gccgtattaaactca 579
|||||||||||||||
Sbjct: 565 gccgtattaaactca 579

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 672,590,292
Number of extensions: 44067175
Number of successful extensions: 4431157
Number of sequences better than 10.0: 859
Length of query: 781
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 757
Effective length of database: 96,409,374,237
Effective search space: 72981896297409
Effective search space used: 72981896297409
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.20
Homology vs Protein
Query= Contig-U15999-1 (Contig-U15999-1Q) /CSM_Contig/Contig-U15999-1Q.Seq.d
(781 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 479,346,481
Number of extensions: 5373603
Number of successful extensions: 14367
Number of sequences better than 10.0: 0
Number of HSP's gapped: 14337
Number of HSP's successfully gapped: 0
Length of query: 260
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 134
Effective length of database: 643,374,430
Effective search space: 86212173620
Effective search space used: 86212173620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.57 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.47 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for Contig-U15999-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0