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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15996-1
Contig ID Contig-U15996-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15996-1 (Contig-U15996-1Q) /CSM_Contig/Contig-U15996-1Q.Seq.d
AATCGGTTGAAGCATTATTTTCATTATCAAATTTGAAATTGAATATCATT
CAAAATTTACAAGCATATGAAGAATCTTTAGTACACCTTAAGCAAGCTGC
AAACTATCCACATAANATTAAATACGATGATCAAGTATCAATAACAAATA
AATATATTATCGAATCTCAATTAATGTATGCTAATTTATTATTCGAAGGT
TTGTCTGGTAAAAAAGATTTAAATGAAGCAAAGAAATATTACGATTTGGC
TTGTGAGGGAAGTTTAAAAAAGAGTGCACCATTCGCAAAGTATGCTATCA
TCCTTTGTAGAGGTGATGGTGGTGATATCATTCCAAAAGATACCGAAAAA
GGTTTGACAATTTTTAGAGAGATCATAGAAGATTCTGGTATTGAACATAC
TCAACCAGGTATCCTTTATTTATATGGTACTTTTTTATTTGAAATTAATA
AAAATGAAGGTATTCAATTCATTAGAGTCGCTGC----------TAATAA
TAATAATAATAATAATAATAATAAAAAGAAAAATAGTAAACAGACCAAAA
AGAATAATTTATGTTAAATAAATATATTTTCAAATGTATTTTAATCAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 635
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1522642
End point 1523218
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U15996
List of clone(s) 

est1=FC-AY07F,1,484
est2=FC-AY07Z,485,635
Translated Amino Acid sequence 
SVEALFSLSNLKLNIIQNLQAYEESLVHLKQAANYPHXIKYDDQVSITNKYIIESQLMYA
NLLFEGLSGKKDLNEAKKYYDLACEGSLKKSAPFAKYAIILCRGDGGDIIPKDTEKGLTI
FREIIEDSGIEHTQPGILYLYGTFLFEINKNEGIQFIRVA---

---IIIIIIIIIKRKIVNRPKRIIYVK*iyfqmyfnqikkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nrlkhyfhyqi*n*isfkiykhmknl*ytlsklqtihixlntmikyq*qinilsnln*cm
liyyskvclvkki*mkqrnitiwlvrev*krvhhsqsmlssfvevmvvisfqkipkkv*q
flers*kilvlnilnqvsfiymvlfylklikmkvfnslesl---

---**********kek**tdqke*fmlnkyifkcilik*kkkkkkkkkkkkkk

Frame B:
ig*siifiikfeieyhskftsi*rifstp*ascklst*x*ir*ssinnk*iyyrisinvc
*fiirrfvw*krfk*skeilrfgl*gkfkkectirkvcyhpl*r*ww*yhskryrkrfdn
f*rdhrrfwy*tystryplfiwyffi*n**k*rysih*src---

---nnnnnnnnnkkknskqtkknnlc*inifsnvf*snkkkkkkkkkkkkkkk

Frame C:
SVEALFSLSNLKLNIIQNLQAYEESLVHLKQAANYPHXIKYDDQVSITNKYIIESQLMYA
NLLFEGLSGKKDLNEAKKYYDLACEGSLKKSAPFAKYAIILCRGDGGDIIPKDTEKGLTI
FREIIEDSGIEHTQPGILYLYGTFLFEINKNEGIQFIRVA---

---IIIIIIIIIKRKIVNRPKRIIYVK*iyfqmyfnqikkkkkkkkkkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15996-1 (Contig-U15996-1Q)
/CSM_Contig/Contig-U15996-1Q.Seq.d
         (645 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15996-1 (Contig-U15996-1Q) /CSM_Contig/Conti...   954  0.0
Contig-U12255-1 (Contig-U12255-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U05086-1 (Contig-U05086-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U15800-1 (Contig-U15800-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U16598-1 (Contig-U16598-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U16515-1 (Contig-U16515-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U16077-1 (Contig-U16077-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U15865-1 (Contig-U15865-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U14979-1 (Contig-U14979-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U13602-1 (Contig-U13602-1Q) /CSM_Contig/Conti...    36  0.064

>Contig-U15996-1 (Contig-U15996-1Q) /CSM_Contig/Contig-U15996-1Q.Seq.d
          Length = 645

 Score =  954 bits (481), Expect = 0.0
 Identities = 484/484 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcggttgaagcattattttcattatcaaatttgaaattgaatatcattcaaaatttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aatcggttgaagcattattttcattatcaaatttgaaattgaatatcattcaaaatttac 60

                                                                       
Query: 61  aagcatatgaagaatctttagtacaccttaagcaagctgcaaactatccacataanatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagcatatgaagaatctttagtacaccttaagcaagctgcaaactatccacataanatta 120

                                                                       
Query: 121 aatacgatgatcaagtatcaataacaaataaatatattatcgaatctcaattaatgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatacgatgatcaagtatcaataacaaataaatatattatcgaatctcaattaatgtatg 180

                                                                       
Query: 181 ctaatttattattcgaaggtttgtctggtaaaaaagatttaaatgaagcaaagaaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaatttattattcgaaggtttgtctggtaaaaaagatttaaatgaagcaaagaaatatt 240

                                                                       
Query: 241 acgatttggcttgtgagggaagtttaaaaaagagtgcaccattcgcaaagtatgctatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acgatttggcttgtgagggaagtttaaaaaagagtgcaccattcgcaaagtatgctatca 300

                                                                       
Query: 301 tcctttgtagaggtgatggtggtgatatcattccaaaagataccgaaaaaggtttgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctttgtagaggtgatggtggtgatatcattccaaaagataccgaaaaaggtttgacaa 360

                                                                       
Query: 361 tttttagagagatcatagaagattctggtattgaacatactcaaccaggtatcctttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttttagagagatcatagaagattctggtattgaacatactcaaccaggtatcctttatt 420

                                                                       
Query: 421 tatatggtacttttttatttgaaattaataaaaatgaaggtattcaattcattagagtcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatatggtacttttttatttgaaattaataaaaatgaaggtattcaattcattagagtcg 480

               
Query: 481 ctgc 484
           ||||
Sbjct: 481 ctgc 484


 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 575 tattttcaaatgtattttaatcaaat 600
           ||||||||||||||||||||||||||
Sbjct: 575 tattttcaaatgtattttaatcaaat 600


>Contig-U12255-1 (Contig-U12255-1Q) /CSM_Contig/Contig-U12255-1Q.Seq.d
          Length = 1017

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 431 ttttttatttgaaattaata 450
           ||||||||||||||||||||
Sbjct: 684 ttttttatttgaaattaata 665


>Contig-U05086-1 (Contig-U05086-1Q) /CSM_Contig/Contig-U05086-1Q.Seq.d
          Length = 1025

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 431 ttttttatttgaaattaataaaaa 454
           |||||||||||||||||| |||||
Sbjct: 69  ttttttatttgaaattaaaaaaaa 92


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,733
Number of Sequences: 8402
Number of extensions: 14733
Number of successful extensions: 1897
Number of sequences better than 10.0: 238
length of query: 645
length of database: 8,075,542
effective HSP length: 16
effective length of query: 629
effective length of database: 7,941,110
effective search space: 4994958190
effective search space used: 4994958190
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 8
Homology vs DNA 
Query= Contig-U15996-1 (Contig-U15996-1Q) /CSM_Contig/Contig-U15996-1Q.Seq.d
         (645 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C25741) Dictyostelium discoideum gamete cDNA, clone FC-AY07.     954   0.0    1
(AK173914) Ciona intestinalis cDNA, clone:ciad027i15, full i...    56   0.002  1
(AK116410) Ciona intestinalis cDNA, clone:citb038j02, full i...    56   0.002  1
(BW429418) Ciona intestinalis cDNA, clone:cijv002l02, 5'end,...    56   0.002  1
(BW114285) Ciona intestinalis cDNA, clone:rcitb067c12, 3' en...    56   0.002  1
(BW032790) Ciona intestinalis cDNA, clone:cibd021b16, 5' end...    56   0.002  1
(AV994647) Ciona intestinalis cDNA, clone:citb38j02, 5' end,...    56   0.002  1
(AV892104) Ciona intestinalis cDNA, clone:rciad27i15, 3' end...    56   0.002  1
(CT025839) Medicago truncatula chromosome 5 clone mth4-19c21...    38   0.064  6
(FK164668) XABT189145.b1 Gateway compatible cien cDNA librar...    50   0.10   1
(FK124486) XABT164524.b1 Gateway compatible cien cDNA librar...    50   0.10   1
(FK116590) XABT159770.b1 Gateway compatible cien cDNA librar...    50   0.10   1
(AC154844) Mus musculus BAC clone RP23-46K13 from chromosome...    48   0.41   1
(AC160371) Bos taurus clone CH240-90L18, WORKING DRAFT SEQUE...    48   0.41   1
(AC129536) Mus musculus chromosome 16 clone RP23-236F1 map 1...    48   0.41   1
(AV994620) Ciona intestinalis cDNA, clone:citb38h17, 5' end,...    48   0.41   1
(DQ666063) Nymphon gracile mitochondrion, complete genome.         32   0.60   4
(AL035477) Plasmodium falciparum MAL4P4.                           38   0.65   4
(AC097511) Homo sapiens BAC clone RP11-393A12 from 4, comple...    40   0.65   3
(AC176506) Strongylocentrotus purpuratus clone R3-3072M14, W...    40   1.3    4
(CU138544) Zebrafish DNA sequence from clone CH211-180P3 in ...    46   1.6    1
(AL953884) Zebrafish DNA sequence from clone CH211-207L13 in...    46   1.6    1
(AL805899) Mouse DNA sequence from clone RP23-400P11 on chro...    46   1.6    1
(CU019620) S.lycopersicum DNA sequence from clone LE_HBa-50I...    46   1.6    1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    46   1.6    1
(AP005161) Oryza sativa Japonica Group genomic DNA, chromoso...    46   1.6    1
(AC101319) Mus musculus clone RP23-106J3, LOW-PASS SEQUENCE ...    46   1.6    1
(AP010062) Lotus japonicus genomic DNA, clone: LjT17B03, TM0...    46   1.6    1
(EJ493115) 1095403555530 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.6    1
(EJ309547) 1095390182965 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.6    1
(AG446253) Mus musculus molossinus DNA, clone:MSMg01-329G13....    46   1.6    1
(EG604748) EMBRYOF099519D21 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    46   1.6    1
(DR944471) EST1136010 Aquilegia cDNA library Aquilegia formo...    46   1.6    1
(EV242223) VV_PEd04h09.b1 Vitis vinifera cv. perlette LibD V...    46   1.6    1
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    34   1.7    6
(AC146759) Medicago truncatula clone mth2-173e19, complete s...    38   3.0    6
(AC157472) Medicago truncatula chromosome 7 clone mth2-41h16...    36   3.1    3
(DB726435) Solanum lycopersicum cDNA, clone: LEFL2052G10, 5'...    38   3.2    2
(AC200512) Pongo abelii BAC clone CH276-72G9 from chromosome...    36   3.3    4
(EJ646279) 1092215010322 Global-Ocean-Sampling_GS-30-01-01-1...    38   3.3    2
(AF125442) Caenorhabditis elegans fosmid H04M03, complete se...    32   3.4    2
(EJ646109) 1092214962591 Global-Ocean-Sampling_GS-30-01-01-1...    38   3.5    2
(AC229796) Oryza minuta clone OM__Ba0017E21, *** SEQUENCING ...    38   3.8    4
(EJ077057) 1095458130545 Global-Ocean-Sampling_GS-26-01-01-1...    32   4.2    2
(EU275727) Dictyostelium fasciculatum strain SH3 mitochondri...    36   4.2    5
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    34   4.9    6
(AC010108) Drosophila melanogaster 3L BAC RP98-23K9 (Roswell...    44   5.8    3
(AC130388) Drosophila melanogaster X BAC CH221-14P20 (Childr...    44   5.9    2
(CR847801) Zebrafish DNA sequence from clone DKEY-280M8 in l...    44   6.3    1
(CR847525) Zebrafish DNA sequence from clone DKEY-223D9 in l...    44   6.3    1
(BX294113) Zebrafish DNA sequence from clone DKEYP-73G8 in l...    44   6.3    1
(CU104678) PTB-037O06, complete sequence.                          44   6.3    1
(AC194992) Pan troglodytes BAC clone CH251-283P24 from chrom...    44   6.3    1
(EF517794) Solanum bulbocastanum BAC 27I18, complete sequence.     44   6.3    1
(X01472) Drosophila melanogaster copia-like element 17.6.          44   6.3    1
(CU311183) Drosophila DNA sequence from clone XX-BACR19P07.        44   6.3    1
(CP000368) Drosophila melanogaster genomic scaffold 21100002...    44   6.3    1
(CP000332) Drosophila melanogaster genomic scaffold 21100002...    44   6.3    1
(CP000226) Drosophila melanogaster genomic scaffold 21100002...    44   6.3    1
(CP000224) Drosophila melanogaster genomic scaffold 21100002...    44   6.3    1
(CP000223) Drosophila melanogaster genomic scaffold 21100002...    44   6.3    1
(CP000221) Drosophila melanogaster genomic scaffold 21100002...    44   6.3    1
(CP000218) Drosophila melanogaster genomic scaffold 21100002...    44   6.3    1
(AE014298) Drosophila melanogaster chromosome X, complete se...    44   6.3    1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    44   6.3    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    44   6.3    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    44   6.3    1
(AC099009) Drosophila melanogaster clone BACR17M11, complete...    44   6.3    1
(AC093550) Drosophila melanogaster 3L BAC RP98-24K7 (Roswell...    44   6.3    1
(AC013255) Drosophila melanogaster clone BACR27A22, complete...    44   6.3    1
(AC011697) Drosophila melanogaster clone BACR12J05, complete...    44   6.3    1
(AC010564) Drosophila melanogaster 3L BAC RP98-27O1 (Roswell...    44   6.3    1
(AC010560) Drosophila melanogaster 3L BAC RPCI98-16K12 (Rosw...    44   6.3    1
(AC010023) Drosophila melanogaster 3L BAC RP98-19G23 (Roswel...    44   6.3    1
(AC009847) Drosophila melanogaster clone BACR03L10, complete...    44   6.3    1
(AC009219) Drosophila melanogaster clone BACR32N16, complete...    44   6.3    1
(AC009212) Drosophila melanogaster, chromosome 3R, region 82...    44   6.3    1
(AC009209) Drosophila melanogaster, chromosome 2R, region 47...    44   6.3    1
(AC008140) Drosophila melanogaster clone BACR15J23, complete...    44   6.3    1
(AC007589) Drosophila melanogaster clone BACR20D10, complete...    44   6.3    1
(AC005894) Drosophila melanogaster, chromosome 2R, region 46...    44   6.3    1
(AC005860) Drosophila melanogaster DNA sequence (P1s DS04504...    44   6.3    1
(AC004333) Drosophila melanogaster DNA sequence (P1 DS05969 ...    44   6.3    1
(AL627344) Human DNA sequence from clone RP11-39H24 on chrom...    44   6.3    1
(AC129850) Homo sapiens X BAC RP13-60P5 (Roswell Park Cancer...    44   6.3    1
(AC058784) Homo sapiens chromosome 13 clone RP11-288O16, com...    44   6.3    1
(AC160447) Bos taurus clone CH240-84B5, WORKING DRAFT SEQUEN...    44   6.3    1
(AC121010) Rattus norvegicus clone CH230-483M10, *** SEQUENC...    44   6.3    1
(AC115212) Rattus norvegicus clone CH230-122L13, WORKING DRA...    44   6.3    1
(AC113701) Rattus norvegicus clone CH230-120O10, *** SEQUENC...    44   6.3    1
(AC109953) Rattus norvegicus clone CH230-306P21, WORKING DRA...    44   6.3    1
(BX510344) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   6.3    1
(AC222116) Bos taurus clone CH240-371J9, WORKING DRAFT SEQUE...    44   6.3    1
(AC215593) Oryctolagus cuniculus clone LB1-194I2, WORKING DR...    44   6.3    1
(AC178371) Strongylocentrotus purpuratus clone R3-3107D12, W...    44   6.3    1
(AC165991) Bos taurus clone CH240-174O22, WORKING DRAFT SEQU...    44   6.3    1
(AC163110) Bos taurus clone CH240-219N7, WORKING DRAFT SEQUE...    44   6.3    1
(AC005453) Drosophila melanogaster strain y chromosome 2 clo...    44   6.3    1
(FH695006) CHO_OF5126xe07r1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   6.3    1
(FH444356) CHO_OF4697xe07r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   6.3    1
(ET926067) CHO_OF226xk11r1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.3    1
(ET763036) CHO_OF158xm13f1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.3    1
(ER543944) 1093016097726 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.3    1
(EJ668970) 1092955051437 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.3    1
(EJ659111) 1092955017645 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.3    1
(EJ595438) 1092961078516 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.3    1
(EJ370804) 1092963723628 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.3    1
(ED704619) GM_WBb0048N20.f GM_WBb Glycine max genomic clone ...    44   6.3    1
(AL106659) Drosophila melanogaster genome survey sequence T7...    44   6.3    1
(CW939590) TcB20.2_A06_SP6 Tribolium BAC library Tribolium c...    44   6.3    1
(EC262003) 524759 MN08 Drosophila melanogaster cDNA clone 29...    44   6.3    1
(EC257029) 487217 CK02 Drosophila melanogaster cDNA clone 21...    44   6.3    1
(EC255813) 487171 CK02 Drosophila melanogaster cDNA clone 21...    44   6.3    1
(EC235675) 323707 CK01 Drosophila melanogaster cDNA clone 73...    44   6.3    1
(EC086668) 323880 CK01 Drosophila melanogaster cDNA clone 73...    44   6.3    1
(DY602846) LIVERF031277D9 POSSUM_01-POSSUM-LIVER-2KB Trichos...    44   6.3    1
(CO340232) EP10241.3prime Exelixis FlyTag CK02 pCDNA-SK+ Dro...    44   6.3    1
(CO340185) EP10155.3prime Exelixis FlyTag CK02 pCDNA-SK+ Dro...    44   6.3    1
(CO293254) EK202245.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.3    1
(CO155343) EN05853.5prime Exelixis FlyTag MN08 BlueScript Dr...    44   6.3    1
(CB931231) ri55b05.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    44   6.3    1
(CA076224) SCMCAM1100D07.g AM1 Saccharum officinarum cDNA cl...    44   6.3    1
(AI531615) SD02751.5prime SD Drosophila melanogaster Schneid...    44   6.3    1
(BP551016) Drosophila melanogaster cDNA clone:FGM210E02, emb...    44   6.3    1
(BI640042) SD22806.5prime SD Drosophila melanogaster Schneid...    44   6.3    1
(FD498971) Ltu01b_191_C01_C012.g1 Liriodendron Flower Bud Li...    44   6.3    1
(EY795289) CR05-C3-701-025-F01-CT.F Mandarin fruit, developm...    44   6.3    1
(AC172273) Bos taurus clone CH240-261B22, WORKING DRAFT SEQU...    36   6.4    3
(AC216389) Oryza punctata clone OP__Ba0079P19, *** SEQUENCIN...    38   7.8    4
(AC138134) Mus musculus strain C57BL/6J clone rp23-382i2 map...    38   8.0    3
(AM461316) Vitis vinifera contig VV78X112336.5, whole genome...    34   8.0    3
(CU273575) Equus caballus GSS, BAC clone CH241-429C9, T7 end...    40   9.5    2

>(C25741) Dictyostelium discoideum gamete cDNA, clone FC-AY07.
          Length = 484

 Score =  954 bits (481), Expect = 0.0
 Identities = 484/484 (100%)
 Strand = Plus / Plus


Query: 1   aatcggttgaagcattattttcattatcaaatttgaaattgaatatcattcaaaatttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aatcggttgaagcattattttcattatcaaatttgaaattgaatatcattcaaaatttac 60


Query: 61  aagcatatgaagaatctttagtacaccttaagcaagctgcaaactatccacataanatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagcatatgaagaatctttagtacaccttaagcaagctgcaaactatccacataanatta 120


Query: 121 aatacgatgatcaagtatcaataacaaataaatatattatcgaatctcaattaatgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatacgatgatcaagtatcaataacaaataaatatattatcgaatctcaattaatgtatg 180


Query: 181 ctaatttattattcgaaggtttgtctggtaaaaaagatttaaatgaagcaaagaaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaatttattattcgaaggtttgtctggtaaaaaagatttaaatgaagcaaagaaatatt 240


Query: 241 acgatttggcttgtgagggaagtttaaaaaagagtgcaccattcgcaaagtatgctatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acgatttggcttgtgagggaagtttaaaaaagagtgcaccattcgcaaagtatgctatca 300


Query: 301 tcctttgtagaggtgatggtggtgatatcattccaaaagataccgaaaaaggtttgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctttgtagaggtgatggtggtgatatcattccaaaagataccgaaaaaggtttgacaa 360


Query: 361 tttttagagagatcatagaagattctggtattgaacatactcaaccaggtatcctttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttttagagagatcatagaagattctggtattgaacatactcaaccaggtatcctttatt 420


Query: 421 tatatggtacttttttatttgaaattaataaaaatgaaggtattcaattcattagagtcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatatggtacttttttatttgaaattaataaaaatgaaggtattcaattcattagagtcg 480


Query: 481 ctgc 484
           ||||
Sbjct: 481 ctgc 484

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 687,394,617
Number of extensions: 43639578
Number of successful extensions: 3994704
Number of sequences better than 10.0: 133
Length of query: 645
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 621
Effective length of database: 96,409,374,237
Effective search space: 59870221401177
Effective search space used: 59870221401177
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.20
Homology vs Protein 
Query= Contig-U15996-1 (Contig-U15996-1Q) /CSM_Contig/Contig-U15996-1Q.Seq.d
         (645 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117073_5(AC117073|pid:none) Dictyostelium discoideum chromosom...    55   2e-06
CP001191_3232(CP001191|pid:none) Rhizobium leguminosarum bv. tri...    40   0.076
AM236080_4042(AM236080|pid:none) Rhizobium leguminosarum bv. vic...    40   0.076
DQ886861_1(DQ886861|pid:none) Argas monolakensis  Sel1 homolog m...    39   0.17
CP000673_1897(CP000673|pid:none) Clostridium kluyveri DSM 555, c...    37   0.38
CP000792_2003(CP000792|pid:none) Campylobacter concisus 13826, c...    35   1.4
CP000478_1469(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    35   1.9
CP000628_2841(CP000628|pid:none) Agrobacterium radiobacter K84 c...    35   2.4
EU622637_2(EU622637|pid:none) Avian paramyxovirus 6 strain APMV-...    34   3.2
AY029299_2(AY029299|pid:none) Avian paramyxovirus 6 complete gen...    34   3.2
FN357550_18(FN357550|pid:none) Schistosoma mansoni genome sequen...    34   4.2
(Q9UBV2) RecName: Full=Protein sel-1 homolog 1; AltName: Full=Su...    33   7.1
AF052059_1(AF052059|pid:none) Homo sapiens SEL1L (SEL1L) mRNA, c...    33   7.1
BC095916_1(BC095916|pid:none) Xenopus laevis hypothetical protei...    33   9.3
(Q9Z2G6) RecName: Full=Protein sel-1 homolog 1; AltName: Full=Su...    33   9.3
BC049959_1(BC049959|pid:none) Mus musculus sel-1 suppressor of l...    33   9.3
(Q9ESM7) RecName: Full=Protein sel-1 homolog 1; AltName: Full=Su...    33   9.3
AF304853_1(AF304853|pid:none) Rattus norvegicus SEL1L (Sel1l) mR...    33   9.3
BC057452_1(BC057452|pid:none) Mus musculus sel-1 suppressor of l...    33   9.3
CP000463_711(CP000463|pid:none) Rhodopseudomonas palustris BisA5...    33   9.3
(Q80Z70) RecName: Full=Protein sel-1 homolog 1; AltName: Full=Su...    33   9.3
AF063095_1(AF063095|pid:none) Mus musculus SELlL (Sel1l) mRNA, c...    33   9.3

>AC117073_5(AC117073|pid:none) Dictyostelium discoideum chromosome 2
           map 6045872-6061342 strain AX4, complete sequence.
          Length = 338

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 1/162 (0%)
 Frame = +3

Query: 3   SVEALFSLSNLKLNIIQNLQAYEESLVHLKQAANYPHXIKYDDQVS-ITNKYIIESQLMY 179
           S EA++ LS L      N+   EESL   +Q ++ P  I   D V+ I N  + +S  +
Sbjct: 101 SAEAIYLLSLLHTQSNGNI---EESLDLYEQVSSLPPFITLSDGVTTIPNARVTDSLYLT 157

Query: 180 ANLLFEGLSGKKDLNEAKKYYDLACEGSLKKSAPFAKYAIILCRGDGGDIIPKDTEKGLT 359
           A+  F G+  ++DL +A ++Y+   E  LK         ++   G G   + KD EKGL
Sbjct: 158 ASFYFNGIGKERDLPKAIEFYNKGIE--LKNEKCIRDLGLLYIEGVG---VEKDIEKGLD 212

Query: 360 IFREIIEDSGIEHTQPGILYLYGTFLFEINKNEGIQFIRVAA 485
           + +     S  E   P   + YG  LF  +  EG ++++ AA
Sbjct: 213 LLK-----SASELGDPVSKFNYGMLLFNDSPIEGFKYMQEAA 249

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 742,666,238
Number of extensions: 11967929
Number of successful extensions: 30351
Number of sequences better than 10.0: 22
Number of HSP's gapped: 30328
Number of HSP's successfully gapped: 30
Length of query: 215
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 92
Effective length of database: 653,084,107
Effective search space: 60083737844
Effective search space used: 60083737844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.14  top: 1.00  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U15996-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0