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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15976-1
Contig ID Contig-U15976-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15976-1 (Contig-U15976-1Q) /CSM_Contig/Contig-U15976-1Q.Seq.d
CGGACGCGTGGGTTTTGTTTTTTTTTTTTTATATATTTAAAAAAAAAAGA
TAATATTTATTTAAATTATATCAAACCTTTTTTTTTTTTTTTTTTTTTTT
AATAATCAAAATAAATAAATAAAAAAATAAAAAAAAAATAAAAAAAATAA
AAAAATGAGTGAATCAATCGATATTAACGTTTATTCACAAACCACAATTC
CAAATGCAATGGCAGAATTAATGGATAATCATAATAAGATGGAGCAAATT
TCAGCTTATTGTAAATCATTATATGCCAATGGTGATGCAGCTCAAGCATA
TGAACAAACTCAAGGTTATGCAAAGAATGCATTATTAAATGTAGCATATC
ATATTCAAACTGTTGGTACTCATATCACTTCCCTATTACAATTACAAACA
AATGAAATGGAGAAATTAAATATTGAAATTCAAACTTTAACACAAAGAGT
AAGAATGATTCATGATTCAACTGGTACAAATGTATTTTCAAATCAAGATG
CAGCAAAACCATATAAATCATCATTAAAGAATAGAAAAGTTGATACAGAA
GCAACAAAGGCACCTGTTAAATATGTACATAAACCAATTTCTTATGGTAT
TAGTGCATCTGATATTAATCAAA----------AATAATAATAAAATAAT
AATAAATAATAATAATAAATAATAAATCTTTATATTTCAATTTTAAAAAT
AAATAAATAAAAAATTTTTTATTTTTTTATTTTTTTTTTTATGTGATTTT
ATTTTATTTTATAAATTTATATAATGGTCTATCAAAACCTTTTGATTTTG
CTTCGTTTGAATTTAAAAATTCAAAAGATTTATAACCAACAGTTTCAATT
AAAAAATTTGTGAATTGATCAGGTTTGAATTTAATTTCTTTATAATTTTT
ATTTATTAATTCTGTTAGATTCTTTCTTTTACTATATCCTTTCCAAGGTT
GAGGTTCAAATAAGAATATACCACCATCCTTTAATAAACTATAAATTTTA
ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 1034
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1171756
End point 1170814
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U15976
List of clone(s) 

est1=SLF193F,1,161
est2=FC-AN22F,72,623
est3=FC-AN22Z,624,1034
Translated Amino Acid sequence 
grvgfvffflyi*kkkiifi*iisnlfffffffnnqnk*ikk*KKNKKNKKMSESIDINV
YSQTTIPNAMAELMDNHNKMEQISAYCKSLYANGDAAQAYEQTQGYAKNALLNVAYHIQT
VGTHITSLLQLQTNEMEKLNIEIQTLTQRVRMIHDSTGTNVFSNQDAAKPYKSSLKNRKV
DTEATKAPVKYVHKPISYGISASDINQ---

---NNNKIIINNNNK**ififqf*k*inkkffiflffflcdfilfykfi*wsiktf*fcf
v*i*kfkrfitnsfn*kicelirfefnffiifiy*fc*ilsftisfprlrfk*eyttil*
*tinfn*kkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
rtrgfcffffiylkkkdniylnyikpfffffff**sk*inkkikkk*kk*kne*inry*r
lftnhnskcngring*s**dganfsll*iiicqw*csssi*tnsrlckeciikcsisysn
cwysyhfpititnk*ngeiky*nsnfntksknds*fnwykcifksrcskti*iiike*ks
*yrsnkgtc*ict*tnflwy*ci*y*s---

---NNNKIIINNNNK**ififqf*k*inkkffiflffflcdfilfykfi*wsiktf*fcf
v*i*kfkrfitnsfn*kicelirfefnffiifiy*fc*ilsftisfprlrfk*eyttil*
*tinfn*kkkkkkkkkkkkk

Frame B:
grvgfvffflyi*kkkiifi*iisnlfffffffnnqnk*ikk*KKNKKNKKMSESIDINV
YSQTTIPNAMAELMDNHNKMEQISAYCKSLYANGDAAQAYEQTQGYAKNALLNVAYHIQT
VGTHITSLLQLQTNEMEKLNIEIQTLTQRVRMIHDSTGTNVFSNQDAAKPYKSSLKNRKV
DTEATKAPVKYVHKPISYGISASDINQ---

---iiik***iiiinnkslyfnfknk*iknflffyfffyvilfyfinlynglskpfdfas
fefknskdl*ptvsikkfvn*sglnlisl*flfinsvrfflllypfqg*gsnknippsfn
kl*ilikkkkkkkkkkkkk

Frame C:
dawvlffffyifkkkr*ylfklyqtfffffffliikink*knkkkikkikk*vnqsiltf
ihkpqfqmqwqn*wiiiirwskfqlivnhympmvmqlkhmnklkvmqrmhy*m*hiifkl
lvlislpyynykqmkwrn*ilkfkl*hke*e*fmiqlvqmyfqikmqqnhinhh*riekl
iqkqqrhllnmyinqflmvlvhlilik---

---***nnnk****iinlyisilkink*kifyffifffm*fyfil*iyimvyqnllillr
lnlkiqkiynqqfqlknl*idqv*i*flynfyllilldsffyyilskvevqiriyhhpli
nykf*lkkkkkkkkkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15976-1 (Contig-U15976-1Q)
/CSM_Contig/Contig-U15976-1Q.Seq.d
         (1044 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15976-1 (Contig-U15976-1Q) /CSM_Contig/Conti...   928  0.0
Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11886-1 (Contig-U11886-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U09764-1 (Contig-U09764-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U06364-1 (Contig-U06364-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U04398-1 (Contig-U04398-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U01086-1 (Contig-U01086-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U16470-1 (Contig-U16470-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13985-1 (Contig-U13985-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Conti...    40  0.007

>Contig-U15976-1 (Contig-U15976-1Q) /CSM_Contig/Contig-U15976-1Q.Seq.d
          Length = 1044

 Score =  928 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Plus

                                                                       
Query: 156 tgagtgaatcaatcgatattaacgtttattcacaaaccacaattccaaatgcaatggcag 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tgagtgaatcaatcgatattaacgtttattcacaaaccacaattccaaatgcaatggcag 215

                                                                       
Query: 216 aattaatggataatcataataagatggagcaaatttcagcttattgtaaatcattatatg 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aattaatggataatcataataagatggagcaaatttcagcttattgtaaatcattatatg 275

                                                                       
Query: 276 ccaatggtgatgcagctcaagcatatgaacaaactcaaggttatgcaaagaatgcattat 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccaatggtgatgcagctcaagcatatgaacaaactcaaggttatgcaaagaatgcattat 335

                                                                       
Query: 336 taaatgtagcatatcatattcaaactgttggtactcatatcacttccctattacaattac 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taaatgtagcatatcatattcaaactgttggtactcatatcacttccctattacaattac 395

                                                                       
Query: 396 aaacaaatgaaatggagaaattaaatattgaaattcaaactttaacacaaagagtaagaa 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaacaaatgaaatggagaaattaaatattgaaattcaaactttaacacaaagagtaagaa 455

                                                                       
Query: 456 tgattcatgattcaactggtacaaatgtattttcaaatcaagatgcagcaaaaccatata 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgattcatgattcaactggtacaaatgtattttcaaatcaagatgcagcaaaaccatata 515

                                                                       
Query: 516 aatcatcattaaagaatagaaaagttgatacagaagcaacaaaggcacctgttaaatatg 575
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatcatcattaaagaatagaaaagttgatacagaagcaacaaaggcacctgttaaatatg 575

                                                           
Query: 576 tacataaaccaatttcttatggtattagtgcatctgatattaatcaaa 623
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tacataaaccaatttcttatggtattagtgcatctgatattaatcaaa 623


 Score =  262 bits (132), Expect = 1e-69
 Identities = 132/132 (100%)
 Strand = Plus / Plus

                                                                       
Query: 741 atgtgattttattttattttataaatttatataatggtctatcaaaaccttttgattttg 800
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtgattttattttattttataaatttatataatggtctatcaaaaccttttgattttg 800

                                                                       
Query: 801 cttcgtttgaatttaaaaattcaaaagatttataaccaacagtttcaattaaaaaatttg 860
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttcgtttgaatttaaaaattcaaaagatttataaccaacagtttcaattaaaaaatttg 860

                       
Query: 861 tgaattgatcag 872
           ||||||||||||
Sbjct: 861 tgaattgatcag 872


 Score =  143 bits (72), Expect = 6e-34
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                        
Query: 932  ctatatcctttccaaggttgaggttcaaataagaatataccaccatcctttaataaacta 991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  ctatatcctttccaaggttgaggttcaaataagaatataccaccatcctttaataaacta 991

                        
Query: 992  taaattttaatt 1003
            ||||||||||||
Sbjct: 992  taaattttaatt 1003


 Score = 93.7 bits (47), Expect = 5e-19
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                         
Query: 31 atatatttaaaaaaaaaagataatatttatttaaattatatcaaacc 77
          |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 atatatttaaaaaaaaaagataatatttatttaaattatatcaaacc 77


 Score = 34.2 bits (17), Expect = 0.42
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 1  cggacgcgtgggttttg 17
          |||||||||||||||||
Sbjct: 1  cggacgcgtgggttttg 17


>Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Contig-U12444-1Q.Seq.d
          Length = 1346

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 746  attttattttattttataaat 766
            |||||||||||||||||||||
Sbjct: 1321 attttattttattttataaat 1301


>Contig-U11886-1 (Contig-U11886-1Q) /CSM_Contig/Contig-U11886-1Q.Seq.d
          Length = 1474

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 746 attttattttattttataaatttat 770
           |||||||||||||||||||| ||||
Sbjct: 309 attttattttattttataaaattat 285


 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 748 tttattttattttat 762
           |||||||||||||||
Sbjct: 64  tttattttattttat 50


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,358
Number of Sequences: 8402
Number of extensions: 37358
Number of successful extensions: 7747
Number of sequences better than 10.0: 1102
length of query: 1044
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1028
effective length of database: 7,941,110
effective search space: 8163461080
effective search space used: 8163461080
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 6
Homology vs DNA 
Query= Contig-U15976-1 (Contig-U15976-1Q) /CSM_Contig/Contig-U15976-1Q.Seq.d
         (1044 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C22991) Dictyostelium discoideum gamete cDNA, clone FC-AN22.     928   0.0    1
(C22990) Dictyostelium discoideum gamete cDNA, clone FC-AN22.     143   1e-50  2
(AU061643) Dictyostelium discoideum slug cDNA, clone SLF193.       58   2e-08  2
(EJ592761) 1092961060005 Global-Ocean-Sampling_GS-29-01-01-1...    46   0.18   2
(AC092959) Homo sapiens 3 BAC RP11-649A16 (Roswell Park Canc...    48   0.67   1
(AC027060) Homo sapiens chromosome 3 clone RP11-649A16 map 3...    48   0.67   1
(EK187781) 1095460007601 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.67   1
(BV358257) S231P6176FH8.T0 BedlingtonTerrier Canis familiari...    36   2.0    2
(EK022691) 1092955342112 Global-Ocean-Sampling_GS-31-01-01-1...    40   2.6    2
(BV335126) S230P6554FD10.T0 Rottweiler Canis familiaris STS ...    46   2.6    1
(AL161667) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    46   2.6    1
(AC222088) Bos taurus clone CH240-371K8, WORKING DRAFT SEQUE...    46   2.6    1
(AC183212) Bos taurus clone CH240-98N10, WORKING DRAFT SEQUE...    46   2.6    1
(EK463383) 1095469404620 Global-Ocean-Sampling_GS-32-01-01-1...    46   2.6    1
(EJ528602) 1092955204722 Global-Ocean-Sampling_GS-29-01-01-1...    46   2.6    1
(EJ312561) 1095403235787 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.6    1
(ED603326) SALK_109427.51.90.x Arabidopsis thaliana TDNA ins...    46   2.6    1
(ED272587) AUAC-aab32g05.b1 Ascaris suum whole genome shotgu...    46   2.6    1
(AJ584140) Equus caballus GSS, BAC clone CH241-102E2, T7 end...    46   2.6    1
(CU270961) Equus caballus GSS, BAC clone CH241-422G21, SP6 e...    46   2.6    1
(CU122406) Equus caballus GSS, BAC clone CH241-236P20, SP6 e...    46   2.6    1
(BH906195) SALK_109427.51.10.x Arabidopsis thaliana TDNA ins...    46   2.6    1
(EH043933) AS1RN5P1H04.ab1 Healthy Roots (RN) Arachis stenos...    46   2.6    1
(EE123931) U77 Peanut (Luhua14) seeds full length cDNA Libra...    46   2.6    1
(CD038797) UTPPI012_D02 USDA-Tifton Peanut Immature Pod cDNA...    46   2.6    1
(ES761734) ISBL_12_D02_E003.g1 USDA-Tifton Peanut Library IS...    46   2.6    1
(ES719785) C20R7_25_F09_E002.g1 USDA-Tifton Peanut Library C...    46   2.6    1
(EL937314) cavy_001697 cavy eyeball cDNA Library Cavia porce...    38   5.6    2
(EL847751) CBXT6991.b1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    32   6.7    2
(DR446531) AR1033A10 A. gomesiana hemocytes normalized libra...    32   6.7    2
(EB368019) nba26a04.y1 Guinea pig eye minus retina and lens....    38   7.6    2
(AF290942) Homo sapiens chromosome 8 clone CTD-3082P9 map 8p...    42   7.9    4

>(C22991) Dictyostelium discoideum gamete cDNA, clone FC-AN22.
          Length = 550

 Score =  928 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Plus


Query: 156 tgagtgaatcaatcgatattaacgtttattcacaaaccacaattccaaatgcaatggcag 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tgagtgaatcaatcgatattaacgtttattcacaaaccacaattccaaatgcaatggcag 142


Query: 216 aattaatggataatcataataagatggagcaaatttcagcttattgtaaatcattatatg 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aattaatggataatcataataagatggagcaaatttcagcttattgtaaatcattatatg 202


Query: 276 ccaatggtgatgcagctcaagcatatgaacaaactcaaggttatgcaaagaatgcattat 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccaatggtgatgcagctcaagcatatgaacaaactcaaggttatgcaaagaatgcattat 262


Query: 336 taaatgtagcatatcatattcaaactgttggtactcatatcacttccctattacaattac 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taaatgtagcatatcatattcaaactgttggtactcatatcacttccctattacaattac 322


Query: 396 aaacaaatgaaatggagaaattaaatattgaaattcaaactttaacacaaagagtaagaa 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaacaaatgaaatggagaaattaaatattgaaattcaaactttaacacaaagagtaagaa 382


Query: 456 tgattcatgattcaactggtacaaatgtattttcaaatcaagatgcagcaaaaccatata 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgattcatgattcaactggtacaaatgtattttcaaatcaagatgcagcaaaaccatata 442


Query: 516 aatcatcattaaagaatagaaaagttgatacagaagcaacaaaggcacctgttaaatatg 575
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatcatcattaaagaatagaaaagttgatacagaagcaacaaaggcacctgttaaatatg 502


Query: 576 tacataaaccaatttcttatggtattagtgcatctgatattaatcaaa 623
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tacataaaccaatttcttatggtattagtgcatctgatattaatcaaa 550

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 851,527,737
Number of extensions: 55728002
Number of successful extensions: 5130220
Number of sequences better than 10.0: 32
Length of query: 1044
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1020
Effective length of database: 96,409,374,237
Effective search space: 98337561721740
Effective search space used: 98337561721740
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.20
Homology vs Protein 
Query= Contig-U15976-1 (Contig-U15976-1Q) /CSM_Contig/Contig-U15976-1Q.Seq.d
         (1044 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FT9) RecName: Full=Abl interactor homolog;                        310   7e-83
BX537304_1(BX537304|pid:none) Zebrafish DNA sequence from clone ...    94   1e-17
CR860681_1(CR860681|pid:none) Pongo abelii mRNA; cDNA DKFZp459J0...    85   4e-15
AF264752_1(AF264752|pid:none) Homo sapiens unknown gene.  &AK000...    84   1e-14
AB179198_1(AB179198|pid:none) Macaca fascicularis testis cDNA cl...    84   1e-14
AK291366_1(AK291366|pid:none) Homo sapiens cDNA FLJ77548 complet...    83   2e-14
BC017157_1(BC017157|pid:none) Mus musculus methylphosphate cappi...    82   3e-14
BC100053_1(BC100053|pid:none) Danio rerio similar to bin3, bicoi...    82   3e-14
BC026876_1(BC026876|pid:none) Mus musculus methylphosphate cappi...    82   3e-14
BC154425_1(BC154425|pid:none) Danio rerio similar to bin3, bicoi...    82   4e-14
BC134875_1(BC134875|pid:none) Danio rerio similar to bin3, bicoi...    82   4e-14
BC128789_1(BC128789|pid:none) Danio rerio similar to bin3, bicoi...    82   4e-14
AK055964_1(AK055964|pid:none) Homo sapiens cDNA FLJ31402 fis, cl...    81   5e-14
BC088435_1(BC088435|pid:none) Rattus norvegicus methylphosphate ...    81   7e-14
AL023828_31(AL023828|pid:none) Caenorhabditis elegans YAC Y17G7B...    74   6e-12
BT010868_1(BT010868|pid:none) Arabidopsis thaliana At5g51130 mRN...    74   6e-12
AK106511_1(AK106511|pid:none) Oryza sativa Japonica Group cDNA c...    71   7e-11
EU967750_1(EU967750|pid:none) Zea mays clone 305792 unknown mRNA.      66   2e-09
EU960011_1(EU960011|pid:none) Zea mays clone 221158 unknown mRNA.      66   2e-09
BC157764_1(BC157764|pid:none) Xenopus tropicalis abl interactor ...    66   2e-09
BC171128_1(BC171128|pid:none) Xenopus tropicalis abl interactor ...    66   2e-09
AY889306_1(AY889306|pid:none) Synthetic construct Homo sapiens c...    65   3e-09
CR857714_1(CR857714|pid:none) Pongo abelii mRNA; cDNA DKFZp459H1...    65   3e-09
AK299824_1(AK299824|pid:none) Homo sapiens cDNA FLJ59236 complet...    65   3e-09
BC079646_1(BC079646|pid:none) Mus musculus abl-interactor 2, mRN...    65   4e-09
BT045166_1(BT045166|pid:none) Salmo salar clone ssal-rgf-513-373...    65   4e-09
AM294282_1(AM294282|pid:none) Drosophila melanogaster CG1239 gen...    65   4e-09
AM294274_1(AM294274|pid:none) Drosophila melanogaster CG1239 gen...    65   4e-09
(Q9VNH1) RecName: Full=Probable methyltransferase CG1239;       ...    65   4e-09
BC081178_1(BC081178|pid:none) Xenopus laevis MGC84356 protein, m...    65   5e-09
AB173132_1(AB173132|pid:none) Macaca fascicularis brain cDNA clo...    63   1e-08
BC124443_1(BC124443|pid:none) Danio rerio zgc:153739, mRNA (cDNA...    63   1e-08
CR936378_2(CR936378|pid:none) Zebrafish DNA sequence from clone ...    63   2e-08
AJ720766_1(AJ720766|pid:none) Gallus gallus mRNA for hypothetica...    62   3e-08
AB040151_1(AB040151|pid:none) Homo sapiens mRNA for hNap1 Bindin...    62   4e-08
FJ380058_1(FJ380058|pid:none) Homo sapiens abl-interactor 1 vari...    62   4e-08
AF540955_1(AF540955|pid:none) Homo sapiens Abl-interactor 1 (SSH...    62   4e-08
U87166_1(U87166|pid:none) Homo sapiens spectrin SH3 domain bindi...    62   4e-08
AK151363_1(AK151363|pid:none) Mus musculus bone marrow macrophag...    62   4e-08
AF420251_1(AF420251|pid:none) Mus musculus abelson interactor 1 ...    62   4e-08
AL139404_8(AL139404|pid:none) Human DNA sequence from clone RP11...    62   4e-08
AK165924_1(AK165924|pid:none) Mus musculus lung RCB-0558 LLC cDN...    62   4e-08
AB209268_1(AB209268|pid:none) Homo sapiens mRNA for Abl-interact...    62   4e-08
AB220488_1(AB220488|pid:none) Macaca fascicularis mRNA, clone Qm...    62   4e-08
AK167568_1(AK167568|pid:none) Mus musculus 11 days pregnant adul...    62   4e-08
AL845257_3(AL845257|pid:none) Mouse DNA sequence from clone RP23...    62   4e-08
AF006516_1(AF006516|pid:none) Homo sapiens eps8 binding protein ...    62   4e-08
AL845257_5(AL845257|pid:none) Mouse DNA sequence from clone RP23...    62   4e-08
BC079926_1(BC079926|pid:none) Xenopus tropicalis abl-interactor ...    62   4e-08
BC129092_1(BC129092|pid:none) Rattus norvegicus abl-interactor 1...    62   4e-08
AL139404_6(AL139404|pid:none) Human DNA sequence from clone RP11...    62   4e-08
BC079642_1(BC079642|pid:none) Mus musculus abl-interactor 1, mRN...    62   4e-08
FJ380059_1(FJ380059|pid:none) Homo sapiens abl-interactor 1 vari...    62   4e-08
BC124378_1(BC124378|pid:none) Danio rerio zgc:153534, mRNA (cDNA...    60   1e-07
U32305_1(U32305|pid:none) Caenorhabditis elegans cosmid B0336, c...    56   2e-06
BC129490_1(BC129490|pid:none) Danio rerio similar to abl-interac...    55   5e-06
AK126803_1(AK126803|pid:none) Homo sapiens cDNA FLJ44853 fis, cl...    54   7e-06
(Q8BYZ1) RecName: Full=ABI gene family member 3; AltName: Full=N...    52   3e-05
AK033965_1(AK033965|pid:none) Mus musculus adult male diencephal...    52   3e-05
AK008928_1(AK008928|pid:none) Mus musculus adult male stomach cD...    52   3e-05
BC079102_1(BC079102|pid:none) Rattus norvegicus ABI family, memb...    52   3e-05
CP001324_315(CP001324|pid:none) Micromonas sp. RCC299 chromosome...    52   3e-05
(Q9P2A4) RecName: Full=ABI gene family member 3; AltName: Full=N...    51   6e-05
AM392922_1(AM392922|pid:none) Synthetic construct Homo sapiens c...    51   6e-05
AX885494_1(AX885494|pid:none) Sequence 1357 from Patent EP1033401.     50   1e-04
CS301494_1(CS301494|pid:none) Sequence 13 from Patent EP1662255.       50   1e-04
CR954206_446(CR954206|pid:none) Ostreococcus tauri strain OTTH05...    47   9e-04
(Q9Y7L2) RecName: Full=Probable methyltransferase C2A9.10;      ...    42   0.047
FN314017_1(FN314017|pid:none) Schistosoma japonicum isolate Anhu...    41   0.079
AM920435_1128(AM920435|pid:none) Penicillium chrysogenum Wiscons...    37   1.1
CP000029_238(CP000029|pid:none) Staphylococcus epidermidis RP62A...    35   3.3
FM954972_2099(FM954972|pid:none) Vibrio splendidus LGP32 chromos...    35   3.3
CP000387_1500(CP000387|pid:none) Streptococcus sanguinis SK36, c...    35   3.3
CP000816_294(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    35   3.3
CU207366_1358(CU207366|pid:none) Gramella forsetii KT0803 comple...    34   7.4
AL844509_64(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    34   9.7

>(Q55FT9) RecName: Full=Abl interactor homolog;
          Length = 332

 Score =  310 bits (793), Expect = 7e-83
 Identities = 156/156 (100%), Positives = 156/156 (100%)
 Frame = +2

Query: 155 MSESIDINVYSQTTIPNAMAELMDNHNKMEQISAYCKSLYANGDAAQAYEQTQGYAKNAL 334
           MSESIDINVYSQTTIPNAMAELMDNHNKMEQISAYCKSLYANGDAAQAYEQTQGYAKNAL
Sbjct: 1   MSESIDINVYSQTTIPNAMAELMDNHNKMEQISAYCKSLYANGDAAQAYEQTQGYAKNAL 60

Query: 335 LNVAYHIQTVGTHITSLLQLQTNEMEKLNIEIQTLTQRVRMIHDSTGTNVFSNQDAAKPY 514
           LNVAYHIQTVGTHITSLLQLQTNEMEKLNIEIQTLTQRVRMIHDSTGTNVFSNQDAAKPY
Sbjct: 61  LNVAYHIQTVGTHITSLLQLQTNEMEKLNIEIQTLTQRVRMIHDSTGTNVFSNQDAAKPY 120

Query: 515 KSSLKNRKVDTEATKAPVKYVHKPISYGISASDINQ 622
           KSSLKNRKVDTEATKAPVKYVHKPISYGISASDINQ
Sbjct: 121 KSSLKNRKVDTEATKAPVKYVHKPISYGISASDINQ 156

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,046,261,498
Number of extensions: 16773506
Number of successful extensions: 56495
Number of sequences better than 10.0: 76
Number of HSP's gapped: 56386
Number of HSP's successfully gapped: 76
Length of query: 348
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 219
Effective length of database: 633,664,753
Effective search space: 138772580907
Effective search space used: 138772580907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.71  gvh: 0.37  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U15976-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0