Contig-U15970-1
Contig ID Contig-U15970-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15970-1 (Contig-U15970-1Q) /CSM_Contig/Contig-U15970-1Q.Seq.d
ATTTTATAACATCATCAAAAAATTGTTTAAAACTAGTAATATTAAAAAAA
ATTAAATCATTATTTCTAATATTATATTTTATACAAAAAAAAACAAAAAA
TCAAAAAAATATTGTGGATCACATAACCATATTAGTTTTTTTTTTCTATT
TTTAATTTTTCGTAAAAATTTTTACCCTTTTTATTTTTTTAGTTAAACAA
TTTTAACTTTTTTGGCATCGGACCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAATTTAAAATTAATTAATTTTAAAAAAAAAAAAAAAAAAA---
-------TAGTTTTAGCTCATTTAGACCCAACTTTACCACGTTCAACAAG
ACATTCTTTTAAAACTTGTTCAGCATTATTATTAATATTTTCATCTTTTA
TTTTTATTAGATTCCAATTAAATGATCCAAGTTCATTCCATTGGGTATTT
GTATTTTTACCATTATATATTGGTGAAGTATCATTATTAGCTGATGCTTT
TTGTAGATTTTATTCAAAGACTGAAGATAAGGAATGTGATTCAAGAGTTT
TCAAATATGCTGTATTACCATTGGTTGCAAAATTAATTTTAATCTTTTCT
TCATGTATTTTCTTAGTTTTCCTTACCTTGTATTTAGAATATCGTTATAT
TTCAATTAATGAGTTATTCGCTCCACTCTATGTTTTAGAATTCTTCATTA
TTTTATTTTTAATTAAAATGTCCTTTTCAAGAAGAAAAGTTACACCAGAG
TCAATTAATTAATTGAATTAATTAATTATTGGTTCAAATAAAAATAATAA
ATAACCAAAATTTACAAAACCAAATCAAATCAAATCAAATCAAATCTAAA
CAAACCAAACCAAACCAAATCAAATCAAATCAAAACAAACCA

Gap gap included
Contig length 882
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2144783
End point 2143902
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U15970
List of clone(s)

est1=FC-AL10F,1,297
est2=FC-AL10Z,298,882
Translated Amino Acid sequence
fitssknclklvilkkikslflilyfiqkktknqknivdhitilvfffyf*ffvkiftlf
iflvkqf*LFWHRTKKKKKKKKKKKNLKLINFKKKKKK---

---VLAHLDPTLPRSTRHSFKTCSALLLIFSSFIFIRFQLNDPSSFHWVFVFLPLYIGEV
SLLADAFCRFYSKTEDKECDSRVFKYAVLPLVAKLILIFSSCIFLVFLTLYLEYRYISIN
ELFAPLYVLEFFIILFLIKMSFSRRKVTPESIN*ln*liigsnknnk*pkftkpnqiksn
qi*tnqtkpnqikskqt


Translated Amino Acid sequence (All Frames)
Frame A:
il*hhqkiv*n**y*kklnhyf*yyilykkkqkikkilwit*py*fffsifnfs*kflpf
lff*lnnfnffgigpkkkkkkkkkkki*n*lilkkkkkk---

---*f*li*tqlyhvqqdillklvqhyy*yfhllflldsn*miqvhsigylyfyhyilvk
yhy*lmlfvdfiqrlkirnviqefsnmlyyhwlqn*f*sflhvfs*fslpci*nivifql
msyslhsmf*nsslfyf*lkcpfqeeklhqsqlin*in*llvqikiinnqnlqnqiksnq
ikskqtkpnqiksnqnkp

Frame B:
fyniikklfktsnikkn*iiisniifytkknkkskkycgshnhisffflflifrknfypf
yffs*tiltflasdqkkkkkkkkkkkfkin*f*kkkkk---

---sfssfrpnfttfnktff*nlfsiiinififyfy*ipik*skfiplgiciftiiyw*s
iiis*cfl*ilfkd*r*gm*fksfqiccitigckinfnlffmyflsfpylvfrislyfn*
*virstlcfrilhyfifn*nvlfkkksytrvn*lielinywfk*k**itkiyktksnqik
snlnkpnqtksnqiktn

Frame C:
fitssknclklvilkkikslflilyfiqkktknqknivdhitilvfffyf*ffvkiftlf
iflvkqf*LFWHRTKKKKKKKKKKKNLKLINFKKKKKK---

---VLAHLDPTLPRSTRHSFKTCSALLLIFSSFIFIRFQLNDPSSFHWVFVFLPLYIGEV
SLLADAFCRFYSKTEDKECDSRVFKYAVLPLVAKLILIFSSCIFLVFLTLYLEYRYISIN
ELFAPLYVLEFFIILFLIKMSFSRRKVTPESIN*ln*liigsnknnk*pkftkpnqiksn
qi*tnqtkpnqikskqt

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15970-1 (Contig-U15970-1Q)
/CSM_Contig/Contig-U15970-1Q.Seq.d
(892 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15970-1 (Contig-U15970-1Q) /CSM_Contig/Conti... 878 0.0
Contig-U05198-1 (Contig-U05198-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U12260-1 (Contig-U12260-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U11758-1 (Contig-U11758-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U16385-1 (Contig-U16385-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U12360-1 (Contig-U12360-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U10207-1 (Contig-U10207-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U05475-1 (Contig-U05475-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U05238-1 (Contig-U05238-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U05969-1 (Contig-U05969-1Q) /CSM_Contig/Conti... 36 0.090

>Contig-U15970-1 (Contig-U15970-1Q) /CSM_Contig/Contig-U15970-1Q.Seq.d
Length = 892

Score = 878 bits (443), Expect = 0.0
Identities = 443/443 (100%)
Strand = Plus / Plus


Query: 308 tagttttagctcatttagacccaactttaccacgttcaacaagacattcttttaaaactt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tagttttagctcatttagacccaactttaccacgttcaacaagacattcttttaaaactt 367


Query: 368 gttcagcattattattaatattttcatcttttatttttattagattccaattaaatgatc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gttcagcattattattaatattttcatcttttatttttattagattccaattaaatgatc 427


Query: 428 caagttcattccattgggtatttgtatttttaccattatatattggtgaagtatcattat 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caagttcattccattgggtatttgtatttttaccattatatattggtgaagtatcattat 487


Query: 488 tagctgatgctttttgtagattttattcaaagactgaagataaggaatgtgattcaagag 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tagctgatgctttttgtagattttattcaaagactgaagataaggaatgtgattcaagag 547


Query: 548 ttttcaaatatgctgtattaccattggttgcaaaattaattttaatcttttcttcatgta 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttttcaaatatgctgtattaccattggttgcaaaattaattttaatcttttcttcatgta 607


Query: 608 ttttcttagttttccttaccttgtatttagaatatcgttatatttcaattaatgagttat 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttttcttagttttccttaccttgtatttagaatatcgttatatttcaattaatgagttat 667


Query: 668 tcgctccactctatgttttagaattcttcattattttatttttaattaaaatgtcctttt 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tcgctccactctatgttttagaattcttcattattttatttttaattaaaatgtcctttt 727


Query: 728 caagaagaaaagttacaccagag 750
|||||||||||||||||||||||
Sbjct: 728 caagaagaaaagttacaccagag 750


Score = 119 bits (60), Expect = 8e-27
Identities = 76/84 (90%)
Strand = Plus / Plus


Query: 1 attttataacatcatcaaaaaattgtttaaaactagtaatattnnnnnnnnttaaatcat 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 attttataacatcatcaaaaaattgtttaaaactagtaatattaaaaaaaattaaatcat 60


Query: 61 tatttctaatattatattttatac 84
||||||||||||||||||||||||
Sbjct: 61 tatttctaatattatattttatac 84


Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 110 tattgtggatcacataaccatattag 135
||||||||||||||||||||||||||
Sbjct: 110 tattgtggatcacataaccatattag 135


Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 260 tttaaaattaattaatttt 278
|||||||||||||||||||
Sbjct: 281 tttaaaattaattaatttt 263


Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 260 tttaaaattaattaatttt 278
|||||||||||||||||||
Sbjct: 260 tttaaaattaattaatttt 278


>Contig-U05198-1 (Contig-U05198-1Q) /CSM_Contig/Contig-U05198-1Q.Seq.d
Length = 804

Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus


Query: 375 attattattaatattttcatcttttatttttatt 408
|||||||||| |||||| || |||||||||||||
Sbjct: 796 attattattattatttttattttttatttttatt 763


>Contig-U12260-1 (Contig-U12260-1Q) /CSM_Contig/Contig-U12260-1Q.Seq.d
Length = 1262

Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Minus


Query: 376 ttattattaatattttcatctttt 399
||||||||| ||||||||||||||
Sbjct: 759 ttattattattattttcatctttt 736


Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 376 ttattattaatattt 390
|||||||||||||||
Sbjct: 1135 ttattattaatattt 1121


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,166
Number of Sequences: 8402
Number of extensions: 28166
Number of successful extensions: 5471
Number of sequences better than 10.0: 614
length of query: 892
length of database: 8,075,542
effective HSP length: 16
effective length of query: 876
effective length of database: 7,941,110
effective search space: 6956412360
effective search space used: 6956412360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 6
Homology vs DNA
Query= Contig-U15970-1 (Contig-U15970-1Q) /CSM_Contig/Contig-U15970-1Q.Seq.d
(892 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C22966) Dictyostelium discoideum gamete cDNA, clone FC-AL10. 882 0.0 1
(C22967) Dictyostelium discoideum gamete cDNA, clone FC-AL10. 86 3e-36 3
(EI942711) VUH2-90B6TR VUUBBa (VUH2) Vigna unguiculata genom... 34 6e-04 3
(AC104484) Sus scrofa clone RP44-454A11, WORKING DRAFT SEQUE... 36 0.016 5
(AM462457) Vitis vinifera contig VV78X057786.5, whole genome... 46 0.022 2
(BX324007) Zebrafish DNA sequence from clone CH211-233C16 in... 50 0.055 4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 0.085 8
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 38 0.097 6
(AC104478) Sus scrofa clone RP44-203B11, WORKING DRAFT SEQUE... 36 0.11 7
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 36 0.11 14
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 50 0.11 4
(CP000361) Arcobacter butzleri RM4018, complete genome. 44 0.11 17
(EI042063) hha0010cd12.g1 hha Oryza australiensis genomic cl... 48 0.12 2
(AX345281) Sequence 352 from Patent WO0200928. 38 0.12 3
(AC200529) Pan troglodytes BAC clone CH251-688B15 from chrom... 50 0.14 1
(AL742403) Danio rerio genomic clone DKEY-17K6, genomic surv... 50 0.14 1
(EI411691) E04_hsX-93066691_PTro_040408.r Pan troglodytes NG... 50 0.14 1
(EI411689) E04_hsX-93066691_PPan_040410.r Pan paniscus NG052... 50 0.14 1
(EI411687) E04_hsX-93066691_GGor_040416.r Gorilla gorilla NG... 50 0.14 1
(BM163551) EST566074 PyBS Plasmodium yoelii yoelii cDNA clon... 50 0.14 1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 0.14 9
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 0.18 12
(AC159538) Medicago truncatula chromosome 8 clone mth2-48f16... 36 0.23 5
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 0.25 8
(CP000027) Dehalococcoides ethenogenes 195, complete genome. 36 0.28 2
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 36 0.29 14
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 36 0.34 14
(AY458647) Uncultured marine bacterium 580 clone EBAC000-36A... 40 0.37 4
(AC168380) Strongylocentrotus purpuratus clone R3-4013F6, WO... 44 0.38 5
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 32 0.40 6
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 32 0.42 9
(ER501057) 1093015399009 Global-Ocean-Sampling_GS-35-01-01-1... 44 0.44 2
(AM424789) Vitis vinifera contig VV78X171037.3, whole genome... 46 0.45 2
(AM462200) Vitis vinifera contig VV78X119953.5, whole genome... 36 0.47 3
(AY392439) Dictyostelium discoideum P-selectin gene, complet... 38 0.49 4
(FG082263) UI-FF-IH0-aba-a-04-0-UI.r1 Ceratitis capitata adu... 36 0.49 3
(AC094712) Rattus norvegicus clone CH230-5M2, *** SEQUENCING... 46 0.51 4
(AM436525) Vitis vinifera contig VV78X179149.4, whole genome... 36 0.54 5
(AC214625) Populus trichocarpa clone POP008-A22, complete se... 40 0.54 8
(AL772256) Mouse DNA sequence from clone RP23-141N19 on chro... 48 0.57 1
(AC163095) Mus musculus chromosome 18, clone RP23-208G10, co... 48 0.57 1
(AC121263) Mus musculus chromosome 18, clone RP24-219I3, com... 48 0.57 1
(AC182560) Mimulus guttatus clone MGBa-24L12, complete seque... 48 0.57 1
(AC113346) Homo sapiens chromosome 5 clone CTD-2532K18, comp... 48 0.57 1
(AC135063) Homo sapiens chromosome 8 clone RP11-54G11 map 8,... 48 0.57 1
(AC127655) Rattus norvegicus clone CH230-111N15, *** SEQUENC... 48 0.57 1
(AC112145) Mus musculus chromosome UNK clone RP23-43J19, WOR... 48 0.57 1
(AC094627) Rattus norvegicus clone CH230-5D7, WORKING DRAFT ... 48 0.57 1
(CU855753) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1
(AC163096) Mus musculus chromosome 18 clone RP23-261A19 map ... 48 0.57 1
(EK248002) 1095460266548 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.57 1
(EJ779169) 1093011905712 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.57 1
(AM641304) Entamoeba dispar GSS, clone dispar81f02.q1k. 48 0.57 1
(EJ058519) 1095456049658 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.57 1
(CZ527268) GMW2-143H24a.b1 GMW2 Glycine max genomic, genomic... 48 0.57 1
(BB045693) Mus musculus 13 days embryo male testis cDNA, RIK... 48 0.57 1
(AC149304) Medicago truncatula clone mth2-76g4, complete seq... 42 0.59 5
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 0.63 8
(EF204913) Pleurotus ostreatus mitochondrion, complete genome. 30 0.71 8
(AJ928751) Theileria annulata EST, clone tam022d09_q1k. 44 0.76 2
(AC044784) Homo sapiens chromosome 10 clone RP11-428L9, comp... 40 0.77 5
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 40 0.78 8
(AC174730) Strongylocentrotus purpuratus clone R3-4003J5, WO... 40 0.78 4
(CU792290) A BAC library has been constructed from PN40024 g... 38 0.78 2
(AF540394) Schistosoma mansoni trimeric G-protein alpha o su... 36 0.94 2
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 32 0.99 10
(DQ913811) Capsicum frutescens clone PEPBAC27, *** SEQUENCIN... 36 1.0 7
(AC148032) Homo sapiens BAC clone RP13-809J14 from 2, comple... 44 1.1 2
(CU801803) A BAC library has been constructed from PN40024 g... 38 1.1 2
(AC166029) Atelerix albiventris clone LB4-434I8, WORKING DRA... 42 1.1 5
(AY445918) Candida zemplinina mitochondrion, complete genome. 34 1.1 5
(ES552748) TL2010D06M13F TL2 Tribolium castaneum cDNA, mRNA ... 32 1.1 3
(AC010983) Homo sapiens BAC clone RP11-484E10 from 2, comple... 36 1.2 2
(CU468511) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.2 2
(CK498422) rswbb0_008274.y1 swb Bombyx mori cDNA, mRNA seque... 38 1.2 3
(AC093910) Homo sapiens BAC clone RP11-762H11 from 2, comple... 36 1.2 2
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34... 34 1.2 9
(AC011583) Homo sapiens clone RP11-13H8, WORKING DRAFT SEQUE... 36 1.2 2
(BM274696) PfESToaa74f11.y1 Plasmodium falciparum 3D7 gameto... 40 1.2 2
(AM614768) Entamoeba invadens IP1 GSS, clone inv052d07.p1k. 38 1.2 2
(AC034124) Homo sapiens chromosome 17 clone RP11-664G15 map ... 32 1.2 6
(AM481892) Vitis vinifera contig VV78X060648.8, whole genome... 44 1.2 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 1.2 9
(CS468846) Sequence 37 from Patent EP1748080. 36 1.2 2
(CS468845) Sequence 36 from Patent EP1748080. 36 1.2 2
(CS419323) Sequence 37 from Patent WO2006094836. 36 1.2 2
(CS419322) Sequence 36 from Patent WO2006094836. 36 1.2 2
(CA856757) PfESToac41g07.y1 Plasmodium falciparum 3D7 gameto... 40 1.3 2
(CT543537) A BAC library has been constructed from cultivar ... 38 1.3 2
(AC090800) Homo sapiens chromosome 11 clone RP11-811O18 map ... 40 1.4 5
(AX345914) Sequence 985 from Patent WO0200928. 36 1.4 2
(AX344570) Sequence 21 from Patent WO0200932. 38 1.4 8
(AM436517) Vitis vinifera contig VV78X052671.5, whole genome... 46 1.4 2
(AC148022) Homo sapiens BAC clone RP11-1383G16 from 2, compl... 44 1.4 3
(AM459806) Vitis vinifera contig VV78X049899.7, whole genome... 34 1.4 5
(AL365339) Human DNA sequence *** SEQUENCING CANCELLED *** f... 38 1.5 8
(BZ012251) oei60b08.b1 B.oleracea002 Brassica oleracea genom... 42 1.5 2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 1.5 11
(AM469123) Vitis vinifera contig VV78X162053.7, whole genome... 46 1.5 2
(CU030607) Equus caballus GSS, BAC clone CH241-123I9, SP6 en... 36 1.5 2
(EV416842) 210758263 NGP Nasonia giraulti cDNA clone 124O17 ... 32 1.6 4
(CU915308) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.6 4
(EJ841062) 1093017832596 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.6 2
(ET684876) CHO_OF352xh23r1.ab1 CHO_OF Nicotiana tabacum geno... 36 1.6 2
(EF100424) Plasmodium chabaudi strain AS-ART ubiquitin speci... 36 1.7 4
(AC187305) Canis lupus familiaris chromosome 6 clone XX-283K... 42 1.7 4
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 42 1.7 6
(EI898643) VUH2-22D11TV VUUBBa (VUH2) Vigna unguiculata geno... 38 1.8 2
(FC567474) CAWF7161.rev CAWF Lottia gigantea from mantle (H)... 40 1.8 2
(AC206111) Saccoglossus kowalevskii BAC CUGI_SK_BA 001B2 (C... 40 1.8 3
(EK020982) 1092955319474 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.8 2
(AM445784) Vitis vinifera, whole genome shotgun sequence, co... 36 1.9 5
(CT497172) A BAC library has been constructed from cultivar ... 38 1.9 2
(CU463101) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.9 5
(AL031745) Plasmodium falciparum DNA from MAL1P2. 32 1.9 10
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 1.9 9
(EI898387) VUH2-22C12TV VUUBBa (VUH2) Vigna unguiculata geno... 38 2.0 2
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 2.0 10
(AM482576) Vitis vinifera contig VV78X188856.3, whole genome... 38 2.0 3
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 34 2.0 8
(AF489470) Ceratobaeus sp. M145 NADH dehydrogenase 3 gene, p... 30 2.1 4
(AF272706) Arabidopsis thaliana BAC F7P1. 38 2.1 3
(CT548592) A BAC library has been constructed from cultivar ... 38 2.1 2
(DD010735) Diagnosis of known genetic Parameters within the ... 40 2.1 8
(CU104773) M.truncatula DNA sequence from clone MTH2-194L2 o... 38 2.2 3
(BX548073) Zebrafish DNA sequence from clone CH211-207C6 in ... 46 2.2 1
(AL928829) Mouse DNA sequence from clone RP23-390B17 on chro... 46 2.2 1
(AC152159) Mus musculus chromosome 15, clone RP23-10O8, comp... 46 2.2 1
(AC142115) Mus musculus BAC clone RP23-327M1 from 3, complet... 46 2.2 1
(AC115784) Mus musculus chromosome 15, clone RP23-170J10, co... 46 2.2 1
(Z11874) Euglena gracilis Z chloroplast DNA. 46 2.2 1
(X70810) Euglena gracilis chloroplast complete genome. 46 2.2 1
(AM481520) Vitis vinifera, whole genome shotgun sequence, co... 46 2.2 1
(AM451735) Vitis vinifera contig VV78X254968.9, whole genome... 46 2.2 1
(AM436633) Vitis vinifera, whole genome shotgun sequence, co... 46 2.2 1
(AM436047) Vitis vinifera contig VV78X104331.18, whole genom... 46 2.2 1
(AM428174) Vitis vinifera contig VV78X136517.5, whole genome... 46 2.2 1
(AC174358) Medicago truncatula chromosome 8 clone mth2-27k4,... 46 2.2 1
(AC144592) Medicago truncatula chromosome 8 clone mth2-23m13... 46 2.2 1
(AP006307) Homo sapiens genomic DNA, chromosome 8 clone:RP11... 46 2.2 1
(AP000074) Homo sapiens genomic DNA, chromosome 8p11.2, sene... 46 2.2 1
(AC138136) Homo sapiens chromosome 8, clone RP11-158D1, comp... 46 2.2 1
(AC090453) Homo sapiens chromosome 8, clone RP11-380B11, com... 46 2.2 1
(AC027451) Homo sapiens chromosome 8, clone RP11-696P8, comp... 46 2.2 1
(AC023245) Homo sapiens chromosome 8, clone RP11-25D10, comp... 46 2.2 1
(AC148230) Gallus gallus clone CH261-173E16, WORKING DRAFT S... 46 2.2 1
(AC146623) Otolemur garnettii clone CH256-392L9, WORKING DRA... 46 2.2 1
(AC115664) Rattus norvegicus clone CH230-378H1, WORKING DRAF... 46 2.2 1
(AC112731) Rattus norvegicus clone CH230-74H2, WORKING DRAFT... 46 2.2 1
(AC112620) Rattus norvegicus clone CH230-366N2, WORKING DRAF... 46 2.2 1
(CU928856) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1
(CU861612) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1
(CU466481) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1
(AC224636) Bos taurus clone CH240-479M11, WORKING DRAFT SEQU... 46 2.2 1
(AC216312) Nomascus leucogenys leucogenys clone CH271-426O22... 46 2.2 1
(AC212661) Solanum lycopersicum chromosome 7 clone C07SLm014... 46 2.2 1
(AC197275) Zea mays chromosome 10 clone CH201-114I15; ZMMBBc... 46 2.2 1
(AC188843) Zea mays chromosome 10 clone ZMMBBb-333D14; ZMMBB... 46 2.2 1
(AC168825) Strongylocentrotus purpuratus clone R3-13E17, WOR... 46 2.2 1
(EF428140) Theileria sp. China 1 clone T132 unknown mRNA. 46 2.2 1
(AZ718795) RPCI-24-87N22.TVC RPCI-24 Mus musculus genomic cl... 46 2.2 1
(ET087911) QM0AAA11DA05FM1 CCL1 Citrus clementina genomic cl... 46 2.2 1
(ET070068) QM0AAA3CC11RM1 CCL1 Citrus clementina genomic clo... 46 2.2 1
(EJ820946) 1093017537488 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.2 1
(EJ791327) 1093017378783 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.2 1
(AM642422) Entamoeba dispar GSS, clone dispar93f07.q1k. 46 2.2 1
(DU971367) 381206 Tomato MboI BAC Library Solanum lycopersic... 46 2.2 1
(DU830334) KBrS006I07R KBrS, Brassica rapa Sau3AI BAC librar... 46 2.2 1
(DU490870) 1098415574911 CHORI-243 Ovis aries genomic clone ... 46 2.2 1
(DH582988) Rattus norvegicus DNA, BAC clone: RNB1-102J20, 5'... 46 2.2 1
(CT509124) A BAC library has been constructed from cultivar ... 46 2.2 1
(CT145670) Sus scrofa genomic clone CH242-237M14, genomic su... 46 2.2 1
(CG951958) MBELV45TF mth2 Medicago truncatula genomic clone ... 46 2.2 1
(CC272629) CH261-90I20_RM1.1 CH261 Gallus gallus genomic clo... 46 2.2 1
(EH245637) JGI_ACAC16119.fwd ACAC Phakopsora pachyrhizi TW72... 46 2.2 1
(EC391662) CcLS1a73a02f1 Carp skin library 1 Cyprinus carpio... 46 2.2 1
(CT801882) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 2.2 1
(CT768535) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 2.2 1
(Z93694) D.crawfordi 16S rRNA gene, partial. 32 2.2 3
(AX458544) Sequence 90 from Patent WO0246454. 38 2.3 6
(DX557535) GH_MBb0083P06f GH_MBb Gossypium hirsutum genomic ... 44 2.5 2
(CP000847) Rickettsia akari str. Hartford, complete genome. 42 2.5 11
(ER938871) AF__Bb0030D23r AF__Bb Aquilegia formosa genomic, ... 38 2.6 2
(AM441840) Vitis vinifera contig VV78X086203.8, whole genome... 44 2.6 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 2.6 11
(AE001369) Plasmodium falciparum 3D7 chromosome 2 section 6 ... 38 2.7 3
(EI056752) hgu0001ce12.b1 hgu Oryza glaberrima genomic clone... 34 2.7 3
(EJ340416) 1092963512491 Global-Ocean-Sampling_GS-28-01-01-1... 36 2.8 3
(DT770027) 125684100 TH1 Tribolium castaneum cDNA clone 79O7... 32 2.8 3
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 32 2.9 2
(L36901) Saccharomyces cerevisiae mitochondrion DNA segment. 32 2.9 3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 2.9 9
(AY242996) Antheraea pernyi mitochondrion, complete genome. 30 3.0 6
(EA102621) Sequence 4 from patent US 7195870. 36 3.0 4
(AX344985) Sequence 56 from Patent WO0200928. 36 3.0 4
(AX323516) Sequence 4 from Patent WO0192565. 36 3.0 4
(AX277841) Sequence 4 from Patent WO0177375. 36 3.0 4
(DJ387354) Diagnosis of Diseases Associated with Apoptosis. 30 3.0 4
(AX345057) Sequence 128 from Patent WO0200928. 30 3.0 4
(AX281262) Sequence 4 from Patent WO0177164. 30 3.0 4
(AM459962) Vitis vinifera contig VV78X060872.7, whole genome... 34 3.1 4
(EI882884) CAH1-63D16TR CAA1Ba Cicer arietinum genomic clone... 30 3.1 3
(CU407335) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 3.2 5
(AZ671127) ENTMP38TF Entamoeba histolytica Sheared DNA Entam... 32 3.2 3
(DU937800) 369441 Tomato EcoRI BAC Library Solanum lycopersi... 32 3.3 3
(AL844507) Plasmodium falciparum chromosome 8. 40 3.3 9
(DT802180) 126420149 TL1 Tribolium castaneum cDNA clone 2C9 ... 32 3.3 3
(AF003491) Fopius arisanus 16S ribosomal RNA gene, partial s... 32 3.4 3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 32 3.4 2
(DT783086) 125669307 TH1 Tribolium castaneum cDNA clone 17K1... 32 3.5 3
(DT801526) 126528953 TL1 Tribolium castaneum cDNA clone 41M2... 32 3.6 3
(DT799158) 126433234 TL1 Tribolium castaneum cDNA clone 55I1... 32 3.6 3
(Z98551) Plasmodium falciparum MAL3P6. 38 3.6 6
(AL732400) Mouse DNA sequence from clone RP23-92K6 on chromo... 42 3.6 6
(DT804178) 127363871 TL1 Tribolium castaneum cDNA clone 101K... 32 3.7 3
(AC004594) Homo sapiens PAC clone RP5-1101C3 from 7, complet... 34 3.7 8
(CU012042) M.truncatula DNA sequence from clone MTH2-25G4 on... 40 3.8 6
(AC123934) Mus musculus BAC clone RP23-354D22 from chromosom... 44 3.8 5
(AC188538) Canis Familiaris chromosome 18, clone XX-365H17, ... 44 3.9 4
(BI813937) PfESToaa20b03.y1 Plasmodium falciparum 3D7 asexua... 42 4.0 2
(AX344552) Sequence 3 from Patent WO0200932. 34 4.1 2
(AX344551) Sequence 2 from Patent WO0200932. 34 4.1 2
(AC147169) Xenopus (Silurana) tropicalis clone CH216-149I15,... 44 4.1 2
(EJ345135) 1092963541806 Global-Ocean-Sampling_GS-28-01-01-1... 38 4.1 2
(CR855129) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.2 2
(AC216412) Populus trichocarpa clone POP035-I15, complete se... 40 4.2 4
(AX458473) Sequence 19 from Patent WO0246454. 38 4.2 3
(AC184451) Strongylocentrotus purpuratus clone R3-3086F17, W... 34 4.2 2
(AC129208) Mus musculus BAC clone RP24-282E2 from chromosome... 34 4.3 2
(AC167720) Mus musculus BAC clone RP24-216G15 from chromosom... 34 4.3 2
(AC144737) Oryza sativa Japonica Group chromosome 5 clone OS... 32 4.3 2
(AC019354) Homo sapiens chromosome 17 clone RP11-504F22 map ... 32 4.3 2
(CR385035) Zebrafish DNA sequence from clone DKEY-182I1 in l... 34 4.3 2
(AC176351) Strongylocentrotus purpuratus clone R3-3049B1, WO... 34 4.3 2
(AC180980) Strongylocentrotus purpuratus clone R3-3058H23, W... 34 4.3 2
(AC027563) Homo sapiens chromosome 15 clone RP11-98L9 map 15... 32 4.3 2
(AC105021) Homo sapiens chromosome 17, clone CTD-2033D24, co... 32 4.3 2
(CU210902) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.3 2
(AC027567) Homo sapiens chromosome 17 clone RP11-122P22 map ... 32 4.3 2
(AC184745) Felis catus clone RP86-362G8, WORKING DRAFT SEQUE... 34 4.3 2
(ET878267) CHO_OF083xd16f1.ab1 CHO_OF Nicotiana tabacum geno... 42 4.5 2
(CT027682) Zebrafish DNA sequence from clone CH211-53M15 in ... 34 4.5 2
(AC180688) Strongylocentrotus purpuratus clone R3-3020J13, W... 34 4.5 2
(AL844506) Plasmodium falciparum chromosome 7. 36 4.6 10
(AX344640) Sequence 65 from Patent WO0200927. 38 4.6 3
(AM426447) Vitis vinifera contig VV78X198354.8, whole genome... 34 4.7 2
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 34 4.7 8
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 34 4.7 2
(AC223452) Bos taurus clone CH240-469D1, WORKING DRAFT SEQUE... 40 4.8 2
(EA688214) Sequence 67093 from patent US 7365185. 32 4.9 2
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8... 34 4.9 8
(AC178109) Strongylocentrotus purpuratus clone R3-3073H5, WO... 38 4.9 7
(CU914307) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.9 8
(CR752654) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 4.9 6
(CS374661) Sequence 764 from Patent WO2006034879. 28 4.9 5
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 32 4.9 8
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 5.0 9
(AL360078) Human DNA sequence from clone RP11-530N10 on chro... 38 5.1 7
(AC151802) Solanum tuberosum chromosome 5 clone PGEC46, comp... 36 5.1 3
(BD460464) Diagnosis of Diseases Associated with Cell Cycle. 34 5.2 2
(BD452386) Diagnosis of Diseases Associated with Cell Cycle. 34 5.2 2
(AX349021) Sequence 479 from Patent WO0202807. 34 5.2 2
(AX252000) Sequence 261 from Patent WO0168911. 34 5.2 2
(BD452606) Diagnosis of Diseases Associated with tumor suppr... 34 5.2 2
(AX323563) Sequence 51 from Patent WO0192565. 34 5.2 2
(AX251085) Sequence 53 from Patent WO0168912. 34 5.2 2
(AX345757) Sequence 828 from Patent WO0200928. 34 5.2 2
(AZ946573) 2M0208K23F Mouse 10kb plasmid UUGC2M library Mus ... 36 5.3 2
(DX544408) GH_MBb0075M13r GH_MBb Gossypium hirsutum genomic ... 30 5.4 4
(CU694362) Zebrafish DNA sequence from clone DKEY-166D12 in ... 40 5.4 6
(AM464698) Vitis vinifera contig VV78X153564.4, whole genome... 40 5.6 2
(BJ401302) Dictyostelium discoideum cDNA clone:dds22f21, 3' ... 32 5.8 2
(AP010021) Lotus japonicus genomic DNA, clone: LjT35C01, TM0... 38 5.8 5
(CR339850) mte1-71B13RM1 BAC end, cultivar Jemalong A17 of M... 32 5.8 2
(EH010539) USDA-FP_181963 Lysiphlebus testaceipes adult whol... 34 5.8 2
(FC577424) CAXP12840.rev CAXP Lottia gigantea from head, foo... 38 5.8 2
(CR876044) Sus scrofa BES. 32 5.8 2
(FP085499) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 5.8 6
(ET883729) CHO_OF427xa11r1.ab1 CHO_OF Nicotiana tabacum geno... 34 5.9 2
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 32 6.1 8
(AJ926037) Theileria annulata EST, clone tam010f03_q1k. 34 6.1 3
(BX537271) Zebrafish DNA sequence from clone CH211-261P7 in ... 36 6.3 5
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 32 6.3 6
(ET281989) S0045P21_T7 CHORI-214 Salmo salar genomic clone S... 40 6.3 2
(AF547983) Schizosaccharomyces japonicus mitochondrial DNA, ... 32 6.4 6
(EJ323725) 1095403525225 Global-Ocean-Sampling_GS-27-01-01-1... 36 6.4 3
(FC660503) CAXW1776.fwd CAXW Lottia gigantea from female gon... 38 6.4 2
(EJ711038) 1092956075532 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.4 2
(CU467719) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6.4 5
(DX539813) GH_MBb0077M19r GH_MBb Gossypium hirsutum genomic ... 38 6.5 3
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 6.6 8
(AC115366) Rattus norvegicus clone CH230-59K8, *** SEQUENCIN... 40 6.6 3
(CZ952268) 263982 Tomato EcoRI BAC Library Solanum lycopersi... 34 6.6 2
(DX398117) GH__Sa0008B02.b1 Gossypium herbaceum WGS library ... 36 6.7 2
(DX397754) GH__Sa0004C04.b1 Gossypium herbaceum WGS library ... 36 6.8 2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 6.8 10
(DN583346) 90790247 Sea Urchin primary mesenchyme cell cDNA ... 40 6.8 2
(EG997257) 031016NL19EPD00002B06 NL19EPD Neotyphodium lolii ... 34 7.1 3
(AC188767) Pan troglodytes BAC clone CH251-689I7 from chromo... 36 7.1 6
(EL923400) NY4Th2_100_A03.b1_A039 NY4 theronts Ichthyophthir... 30 7.2 3
(AC114774) Homo sapiens BAC clone RP11-466J24 from 4, comple... 36 7.2 5
(AC136471) Solanum demissum chromosome 11 clone PGEC561, com... 42 7.2 5
(DU918397) 337482 Tomato EcoRI BAC Library Solanum lycopersi... 36 7.3 2
(DY455145) 1529609 MARC 11BOV Bos taurus cDNA 3', mRNA seque... 32 7.3 3
(CS374633) Sequence 736 from Patent WO2006034879. 36 7.4 3
(CS374361) Sequence 464 from Patent WO2006034879. 36 7.4 3
(AC192513) Cavia porcellus clone CH234-53G21, WORKING DRAFT ... 42 7.5 5
(EK071507) 1092960198243 Global-Ocean-Sampling_GS-31-01-01-1... 36 7.5 2
(AC230870) Bos taurus clone CH240-497H18, WORKING DRAFT SEQU... 36 7.6 5
(ED527237) KBrB116O07F KBrB, Brassica rapa BamHI BAC library... 36 7.6 2
(AC216836) Populus trichocarpa clone POP013-I22, complete se... 36 7.6 5
(BX936392) Zebrafish DNA sequence from clone CH211-197O16 in... 36 7.6 5
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 32 7.6 10
(V00696) Yeast (S. cerevisiae) mitochondrial gene for cytoch... 34 7.7 3
(AL035476) Plasmodium falciparum MAL4P3. 30 7.7 10
(AC183491) Rhinolophus ferrumequinum clone VMRC7-88D19, WORK... 38 7.8 4
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 7.8 7
(CK236011) AGENCOURT_16981829 NCI_CGAP_ZKid1 Danio rerio cDN... 34 7.9 3
(AC189731) Canis familiaris clone XX-499D10, *** SEQUENCING ... 44 7.9 5
(CU672243) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 8.1 5
(AC116989) Dictyostelium discoideum chromosome 2 map 4545040... 38 8.1 5
(AC217475) Neofelis nebulosa clone CH87-13P9, WORKING DRAFT ... 36 8.2 7
(AX345925) Sequence 996 from Patent WO0200928. 36 8.2 4
(BX004808) Zebrafish DNA sequence from clone CH211-51B23 in ... 42 8.2 5
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 36 8.2 15
(AC025691) Homo sapiens chromosome 1 clone RP11-12H8, WORKIN... 44 8.4 4
(AL035475) Plasmodium falciparum MAL4P2. 36 8.4 7
(BX510653) Zebrafish DNA sequence from clone DKEY-100F21 in ... 42 8.5 5
(DQ102703) Coreana raphaelis mitochondrion, complete genome. 30 8.5 6
(FB332198) Sequence 5 from Patent WO2007115213. 34 8.6 8
(CS448321) Sequence 5 from Patent WO2006117381. 34 8.6 8
(CR450774) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 8.6 7
(BZ071192) lkg56f06.b1 B.oleracea002 Brassica oleracea genom... 36 8.7 3
(CS468864) Sequence 55 from Patent EP1748080. 34 8.7 9
(CS468863) Sequence 54 from Patent EP1748080. 34 8.7 9
(CS419341) Sequence 55 from Patent WO2006094836. 34 8.7 9
(CS419340) Sequence 54 from Patent WO2006094836. 34 8.7 9
(ET926621) CHO_OF295xi18f1.ab1 CHO_OF Nicotiana tabacum geno... 34 8.7 3
(EK128238) 1092996300114 Global-Ocean-Sampling_GS-31-01-01-1... 36 8.7 3
(EJ739408) 1092962005145 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.7 3
(CU855820) Zebrafish DNA sequence from clone CH73-56L3 in li... 44 8.8 1
(CU012054) Zebrafish DNA sequence from clone DKEYP-117D7 in ... 44 8.8 1
(CT030221) Zebrafish DNA sequence from clone CH211-168P1 in ... 44 8.8 1
(CR847783) Zebrafish DNA sequence from clone DKEYP-2C8 in li... 44 8.8 1
(CR407702) Zebrafish DNA sequence from clone DKEY-171M10 in ... 44 8.8 1
(CR382337) Zebrafish DNA sequence from clone DKEY-26N5 in li... 44 8.8 1
(BX649489) Zebrafish DNA sequence from clone CH211-89O10 in ... 44 8.8 1
(BX294162) Zebrafish DNA sequence from clone CH211-270C5 in ... 44 8.8 1
(BX276115) Zebrafish DNA sequence from clone DKEY-274M17 in ... 44 8.8 1
(AL672161) Zebrafish DNA sequence from clone BUSM1-1I3 in li... 44 8.8 1
(AB291206) Hyposoter fugitivus ichnovirus DNA, segment D12, ... 44 8.8 1
(BV231340) S233P6373RE12.T0 LabradorRetriever Canis familiar... 44 8.8 1
(BV014876) S212P6392FD8.T0 CZECHII/Ei Mus musculus STS genom... 44 8.8 1
(AL845373) Mouse DNA sequence from clone RP23-211L7 on chrom... 44 8.8 1
(AC165965) Mus musculus BAC clone RP23-307L24 from chromosom... 44 8.8 1
(AC161172) Mus musculus chromosome 15, clone RP24-265I13, co... 44 8.8 1
(AC159284) Mus musculus BAC clone RP23-318K10 from chromosom... 44 8.8 1
(AC153852) Mus musculus 10 BAC RP23-136F8 (Roswell Park Canc... 44 8.8 1
(AC153802) Mus musculus 6 NOVECTOR RP24-79H20 (Roswell Park ... 44 8.8 1
(AC144913) Mus musculus chromosome 15, clone RP24-203A19, co... 44 8.8 1
(AC140786) Mus musculus BAC clone RP23-455E11 from chromosom... 44 8.8 1
(AC140207) Mus musculus BAC clone RP24-446P10 from chromosom... 44 8.8 1
(AC125583) Rattus norvegicus 4 BAC CH230-1A7 (Children's Hos... 44 8.8 1
(AC125014) Mus musculus chromosome 16, clone RP24-149C21, co... 44 8.8 1
(AC122902) Mus musculus BAC clone RP23-40O6 from chromosome ... 44 8.8 1
(AC118202) Mus musculus chromosome 10, clone RP23-378J3, com... 44 8.8 1
(AC109612) Mus musculus strain C57BL/6J clone rp23-37i3 map ... 44 8.8 1
(AC090750) Mus musculus strain C57BL/6J clone rp23-329l13 ma... 44 8.8 1
(BS000629) Pan troglodytes chromosome Y clone: PTB-194O02. 44 8.8 1
(BS000552) Pan troglodytes chromosome Y clone:PTB-302F24, co... 44 8.8 1
(AC213321) MACACA MULATTA BAC clone CH250-541A11 from chromo... 44 8.8 1
(AC206891) MACACA MULATTA BAC clone CH250-56H16 from chromos... 44 8.8 1
(AC184056) Pan troglodytes BAC clone CH251-484C3 from chromo... 44 8.8 1
(AC183531) Pan troglodytes BAC clone CH251-637O1 from chromo... 44 8.8 1
(AC146254) Pan troglodytes BAC clone CH251-128L22 from Y, co... 44 8.8 1
(X73283) S.rostrata glb3 gene for leghemoglobin. 44 8.8 1
(EU124733) Solanum lycopersicum chromosome 3 clone C03HBa003... 44 8.8 1
(CU928761) S.lycopersicum DNA sequence from clone SL_MboI-5K... 44 8.8 1
(CU459062) S.lycopersicum DNA sequence from clone LE_HBa-75G... 44 8.8 1
(AM482958) Vitis vinifera contig VV78X019958.11, whole genom... 44 8.8 1
(AM480593) Vitis vinifera contig VV78X029589.2, whole genome... 44 8.8 1
(AM465779) Vitis vinifera contig VV78X017559.2, whole genome... 44 8.8 1
(AM452457) Vitis vinifera contig VV78X022673.4, whole genome... 44 8.8 1
(AM450737) Vitis vinifera contig VV78X093362.5, whole genome... 44 8.8 1
(AM450551) Vitis vinifera contig VV78X048228.5, whole genome... 44 8.8 1
(AM448073) Vitis vinifera contig VV78X195432.5, whole genome... 44 8.8 1
(AM427794) Vitis vinifera contig VV78X091562.14, whole genom... 44 8.8 1
(AM426983) Vitis vinifera contig VV78X014137.24, whole genom... 44 8.8 1
(AM425993) Vitis vinifera contig VV78X000063.4, whole genome... 44 8.8 1
(AF404303) Spizellomyces punctatus mitochondrial chromosome ... 44 8.8 1
(AC215390) Solanum lycopersicum chromosome 2 clone C02HBa012... 44 8.8 1
(AC139745) Medicago truncatula clone mth2-17d15, complete se... 44 8.8 1
(AC137831) Medicago truncatula clone mth2-34o21, complete se... 44 8.8 1
(AC127429) Medicago truncatula clone mth2-9o20, complete seq... 44 8.8 1
(AY954969) Bacteriophage G1, complete genome. 44 8.8 1
(AY176327) Staphylococcus phage K, complete genome. 44 8.8 1
(CU457488) Pig DNA sequence from clone CH242-189K22 on chrom... 44 8.8 1
(AJ634916) Sus scrofa TRAIN A gene for Train A protein precu... 44 8.8 1
(AJ430467) Sus scrofa mRNA for putative pancreatic ribonucle... 44 8.8 1
(AC187980) Canis Familiaris chromosome 9, clone XX-458L23, c... 44 8.8 1
(AC186986) Canis familiaris chromosome 6, clone XX-302M17, c... 44 8.8 1
(L23068) Dictyostelium discoideum nucleoside diphosphate kin... 44 8.8 1
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 44 8.8 1
(AP003119) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 8.8 1
(AL450345) Human DNA sequence from clone RP11-300M24 on chro... 44 8.8 1
(AL449323) Human DNA sequence from clone RP11-429L21 on chro... 44 8.8 1
(AL390962) Human DNA sequence from clone RP11-84G24 on chrom... 44 8.8 1
(AC211234) Homo sapiens FOSMID clone ABC9-44026200L10 from c... 44 8.8 1
(AC160020) Homo sapiens BAC clone RP11-540L21 from 2, comple... 44 8.8 1
(AC148026) Homo sapiens BAC clone RP11-625I24 from 2, comple... 44 8.8 1
(AC099791) Homo sapiens chromosome 1 clone RP11-430G17, comp... 44 8.8 1
(AC099646) Homo sapiens BAC clone RP11-478P16 from 2, comple... 44 8.8 1
(AC096579) Homo sapiens BAC clone RP11-601N4 from 2, complet... 44 8.8 1
(AC093913) Homo sapiens BAC clone RP11-768G3 from 4, complet... 44 8.8 1
(AC073995) Homo sapiens BAC clone RP11-780I14 from 2, comple... 44 8.8 1
(AC021127) Homo sapiens BAC clone RP11-377G16 from 4, comple... 44 8.8 1
(AC017099) Homo sapiens BAC clone RP11-542D13 from 2, comple... 44 8.8 1
(AC004474) Homo sapiens chromosome Y, clone 475I1, complete ... 44 8.8 1
(AC002531) Homo sapiens chromosome Y, clone 486_O_8, complet... 44 8.8 1
(AC158814) Bos taurus clone CH240-64F19, WORKING DRAFT SEQUE... 44 8.8 1
(AC150760) Medicago truncatula clone mth2-171i12, WORKING DR... 44 8.8 1
(AC150239) Sorex araneus clone SA_Ba-527L4, WORKING DRAFT SE... 44 8.8 1
(AC148741) Macropus eugenii clone ME_KBa-191O7, WORKING DRAF... 44 8.8 1
(AC148433) Sorex araneus clone SA_Ba-304P18, WORKING DRAFT S... 44 8.8 1
(AC136383) Rattus norvegicus clone CH230-53O20, *** SEQUENCI... 44 8.8 1
(AC135485) Rattus norvegicus clone CH230-220O3, *** SEQUENCI... 44 8.8 1
(AC132970) Rattus norvegicus clone CH230-150P12, *** SEQUENC... 44 8.8 1
(AC131135) Rattus norvegicus clone CH230-193D22, *** SEQUENC... 44 8.8 1
(AC129809) Rattus norvegicus clone CH230-284M17, *** SEQUENC... 44 8.8 1
(AC128791) Rattus norvegicus clone CH230-182E3, *** SEQUENCI... 44 8.8 1
(AC126212) Rattus norvegicus clone CH230-512B17, *** SEQUENC... 44 8.8 1
(AC124848) Homo sapiens chromosome 5 clone CTC-492N21, WORKI... 44 8.8 1
(AC122101) Rattus norvegicus clone CH230-506G16, *** SEQUENC... 44 8.8 1
(AC121738) Rattus norvegicus clone CH230-88K16, WORKING DRAF... 44 8.8 1
(AC120698) Rattus norvegicus clone CH230-82C10, *** SEQUENCI... 44 8.8 1
(AC120129) Mus musculus clone RP23-211L7, WORKING DRAFT SEQU... 44 8.8 1
(AC119449) Rattus norvegicus clone CH230-46C3, *** SEQUENCIN... 44 8.8 1
(AC114159) Rattus norvegicus clone CH230-162I20, *** SEQUENC... 44 8.8 1
(AC109738) Rattus norvegicus clone CH230-313H8, *** SEQUENCI... 44 8.8 1
(AC108286) Rattus norvegicus clone CH230-186I1, WORKING DRAF... 44 8.8 1
(AC106131) Rattus norvegicus clone CH230-235G23, *** SEQUENC... 44 8.8 1
(AC105564) Rattus norvegicus clone CH230-250G11, *** SEQUENC... 44 8.8 1
(AC100424) Mus musculus clone RP23-136F8, LOW-PASS SEQUENCE ... 44 8.8 1
(AC098552) Rattus norvegicus clone CH230-75O20, *** SEQUENCI... 44 8.8 1
(AC097984) Rattus norvegicus clone CH230-50M23, WORKING DRAF... 44 8.8 1
(AC096333) Rattus norvegicus clone CH230-86J3, *** SEQUENCIN... 44 8.8 1
(AC095748) Rattus norvegicus clone CH230-8F4, *** SEQUENCING... 44 8.8 1
(AC095294) Rattus norvegicus clone CH230-11P23, WORKING DRAF... 44 8.8 1
(AC094990) Rattus norvegicus clone CH230-6E21, WORKING DRAFT... 44 8.8 1
(AC094964) Rattus norvegicus clone CH230-6L21, WORKING DRAFT... 44 8.8 1
(AC094645) Rattus norvegicus clone CH230-4M23, *** SEQUENCIN... 44 8.8 1
(AC094160) Rattus norvegicus clone CH230-2M24, *** SEQUENCIN... 44 8.8 1
(AC068835) Homo sapiens chromosome 4 clone RP11-256N1 map 4,... 44 8.8 1
(AC068081) Homo sapiens chromosome 11 clone RP11-259H21 map ... 44 8.8 1
(CU468152) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(CU467768) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(CT955972) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(CT476818) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 8.8 1
(CR749166) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 8.8 1
(CR385043) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 8.8 1
(AP010148) Lotus japonicus genomic DNA, clone: LjT21I06, TM1... 44 8.8 1
(AC230302) Bos taurus clone CH240-513G12, WORKING DRAFT SEQU... 44 8.8 1
(AC222893) Bos taurus clone CH240-436A11, WORKING DRAFT SEQU... 44 8.8 1
(AC219912) Bos taurus clone CH240-319B9, WORKING DRAFT SEQUE... 44 8.8 1
(AC218217) Bos taurus clone CH240-290I21, WORKING DRAFT SEQU... 44 8.8 1
(AC212860) Pongo abelii chromosome UNKNOWN clone CH276-103B1... 44 8.8 1
(AC211086) Solanum lycopersicum chromosome 6 clone C06SLm012... 44 8.8 1
(AC211021) Solanum lycopersicum chromosome 6 clone C06HBa001... 44 8.8 1
(AC207994) Homo sapiens chromosome 2 clone ABC10-44572800C9,... 44 8.8 1
(AC201145) Strongylocentrotus purpuratus clone R3-14D3, WORK... 44 8.8 1
(AC200966) Strongylocentrotus purpuratus clone R3-1116J3, WO... 44 8.8 1
(AC194583) Canis familiaris chromosome 9 clone XX-346L14 map... 44 8.8 1
(AC190622) Zea mays chromosome 3 clone CH201-262D15; ZMMBBc0... 44 8.8 1
(AC189945) Macaca mulatta clone CH250-45C7, WORKING DRAFT SE... 44 8.8 1
(AC183586) Canis lupus familiaris chromosome 9 clone XX-21J1... 44 8.8 1
(AC183189) Bos taurus clone CH240-99L9, WORKING DRAFT SEQUEN... 44 8.8 1
(AC181317) Strongylocentrotus purpuratus clone R3-115E9, WOR... 44 8.8 1
(AC176917) Strongylocentrotus purpuratus clone R3-33C4, WORK... 44 8.8 1
(AC173885) Bos taurus clone CH240-274D7, WORKING DRAFT SEQUE... 44 8.8 1
(AC171790) Bos taurus clone CH240-279F9, WORKING DRAFT SEQUE... 44 8.8 1
(AC170304) Bos taurus clone CH240-201M4, WORKING DRAFT SEQUE... 44 8.8 1
(AC167645) Bos taurus clone CH240-191N19, WORKING DRAFT SEQU... 44 8.8 1
(AC164760) Bos taurus clone CH240-146P18, *** SEQUENCING IN ... 44 8.8 1
(AC164032) Bos taurus clone CH240-127C16, WORKING DRAFT SEQU... 44 8.8 1
(AC024602) Homo sapiens chromosome 11 clone RP11-319P10, WOR... 44 8.8 1
(AC013691) Homo sapiens clone RP11-21L23, WORKING DRAFT SEQU... 44 8.8 1
(AC007701) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 44 8.8 1
(AZ109973) RPCI-23-446H24.TJ RPCI-23 Mus musculus genomic cl... 44 8.8 1
(FH972823) CHO_OF6814xo15f1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 8.8 1
(FH972793) CHO_OF6814xi15f1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 8.8 1
(FH373879) CHO_OF4574xb14f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 8.8 1
(ET827633) CHO_OF790xg11f1.ab1 CHO_OF Nicotiana tabacum geno... 44 8.8 1
(ER577719) 1093015818880 Global-Ocean-Sampling_GS-36-01-01-2... 44 8.8 1
(ER448744) 1092963840534 Global-Ocean-Sampling_GS-35-01-01-1... 44 8.8 1
(EK547655) 1095516101789 Global-Ocean-Sampling_GS-32-01-01-1... 44 8.8 1
(EK322175) 1095462433027 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.8 1
(EK271796) 1095462260728 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.8 1
(EK252131) 1095460285560 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.8 1
(AM645920) Entamoeba moshkovskii FIC GSS, clone mosh032c06.q1k. 44 8.8 1
(EJ421361) 1093012233917 Global-Ocean-Sampling_GS-28-01-01-1... 44 8.8 1

>(C22966) Dictyostelium discoideum gamete cDNA, clone FC-AL10.
Length = 585

Score = 882 bits (445), Expect = 0.0
Identities = 445/445 (100%)
Strand = Plus / Plus


Query: 308 tagttttagctcatttagacccaactttaccacgttcaacaagacattcttttaaaactt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagttttagctcatttagacccaactttaccacgttcaacaagacattcttttaaaactt 60


Query: 368 gttcagcattattattaatattttcatcttttatttttattagattccaattaaatgatc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttcagcattattattaatattttcatcttttatttttattagattccaattaaatgatc 120


Query: 428 caagttcattccattgggtatttgtatttttaccattatatattggtgaagtatcattat 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caagttcattccattgggtatttgtatttttaccattatatattggtgaagtatcattat 180


Query: 488 tagctgatgctttttgtagattttattcaaagactgaagataaggaatgtgattcaagag 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagctgatgctttttgtagattttattcaaagactgaagataaggaatgtgattcaagag 240


Query: 548 ttttcaaatatgctgtattaccattggttgcaaaattaattttaatcttttcttcatgta 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttcaaatatgctgtattaccattggttgcaaaattaattttaatcttttcttcatgta 300


Query: 608 ttttcttagttttccttaccttgtatttagaatatcgttatatttcaattaatgagttat 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttttcttagttttccttaccttgtatttagaatatcgttatatttcaattaatgagttat 360


Query: 668 tcgctccactctatgttttagaattcttcattattttatttttaattaaaatgtcctttt 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcgctccactctatgttttagaattcttcattattttatttttaattaaaatgtcctttt 420


Query: 728 caagaagaaaagttacaccagagtc 752
|||||||||||||||||||||||||
Sbjct: 421 caagaagaaaagttacaccagagtc 445

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 911,731,979
Number of extensions: 70256455
Number of successful extensions: 7706341
Number of sequences better than 10.0: 581
Length of query: 892
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 868
Effective length of database: 96,409,374,237
Effective search space: 83683336837716
Effective search space used: 83683336837716
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U15970-1 (Contig-U15970-1Q) /CSM_Contig/Contig-U15970-1Q.Seq.d
(892 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001402_978(CP001402|pid:none) Sulfolobus islandicus M.16.4, co... 36 2.0
CP001097_1557(CP001097|pid:none) Chlorobium limicola DSM 245, co... 35 2.6
AL035477_11(AL035477|pid:none) Plasmodium falciparum MAL4P4. 35 4.4
AE000783_352(AE000783|pid:none) Borrelia burgdorferi B31, comple... 34 5.8
AE014186_162(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 34 5.8
AY576274_1(AY576274|pid:none) Schistosoma mansoni putative seven... 34 7.5
EF014312_1(EF014312|pid:none) Kinyongia fischeri voucher none NA... 34 7.5
AE014298_2867(AE014298|pid:none) Drosophila melanogaster chromos... 34 7.6

>CP001402_978(CP001402|pid:none) Sulfolobus islandicus M.16.4,
complete genome.
Length = 102

Score = 35.8 bits (81), Expect = 2.0
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +1

Query: 589 LIFSSCIFLVFLTLYLEYRYISINELFAPLYVLEFFIILFLIKMSFSRRK 738
++F S +F++ +TLY+ YR ++IN + +L F ILF++ ++ S R+
Sbjct: 55 IVFLSPLFIMLITLYIIYRLLAIN-----IILLIFLSILFIVDIAASTRR 99

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 912,336,545
Number of extensions: 14230197
Number of successful extensions: 52208
Number of sequences better than 10.0: 8
Number of HSP's gapped: 50177
Number of HSP's successfully gapped: 8
Length of query: 297
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 169
Effective length of database: 636,901,312
Effective search space: 107636321728
Effective search space used: 107636321728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.19 gvh: 0.49 alm: 0.20 top: 0.37 tms: 0.27 mit: 0.34 mip: 0.11
nuc: 0.95 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

48.0 %: plasma membrane
16.0 %: mitochondrial
16.0 %: endoplasmic reticulum
12.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U15970-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0