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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U15952-1
Contig ID Contig-U15952-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15952-1 (Contig-U15952-1Q) /CSM_Contig/Contig-U15952-1Q.Seq.d
GATCTTGCTGTGGCCGCTGTTTTTTCAGATTGTTCATCTCATCCATCATC
ACCAATTAATAATAACTTTTATTTATCTGCAGCCTCCTCTGCTAATCCTT
CATCATCTTTACTTTCTGCTTTAAGTAGACATTCTTCAAGTACTACCATT
CAAGAGGATGAAGCTGAAATTAGACCACCTGCTTCTTTACAATCTTCTCC
TAAAAAATTTAGATCTGAAGAATTTAATAATAATAATAATAACAATTTAG
ATAATGATAATGACAGCGATGACGAATATGATTATTATGATTTTAAGAAT
AACGAAAGTGGTGTTTTATTATTAGTAATTAGCAGTAACCAATTGATTGA
AGTAGATTATAATGAAGAGGAATTACAAATTTTCGATAGACATTTCTATT
TAACCGATTCAGTTCAAAAGATTAATTCCGATAGTAAATTATTAGGTTCA
GTTATAAAATGTCAAAAAACTTATTTCGTAGTACCATTTTCAACTATAAA
CACTGGTATAATCACTCAAGGTGATTTAACTTTAGTTCAAAAAGTTTATG
ATCCATCAACTTTAGTTGTTGGTAGTAAAGTTTTTGATTCAAATAAAATT
GCTGCTGG----------GCGTTTCATTCCAAGTTACATCCAAATTTAAA
TGTTAATGGTACGGTTTGTCTTAGTTTGTTAGGTACTTGGCATGGAAATA
AAAATGAACTTTGGATACCAGAGGTTTCAAATCTATTGCAAGTGTTAATT
AGTATTCAAGGTTTAATATTAGGTTGTAAAGAACCCTATTTCTTAGAGGC
AGGTTATGATACTCAAATCGGAACACATATTGGTATTAGAAATTCTTCGA
TTTTCAATGAAGATTCCTATCTTTTATCTTTGGAAACTATTTGTTTCTAT
TTAAAAAATCAACCAATACTATTTAAAGATATCATTCAAAATCATTTCAA
ACTTGAATTACCTGCAATCTTAAATAGAATCGATCAATTTTTAAATCAAA
ATAATCAAGCCAACAATGGTATCAAAAGTTTATTCTGTATTAACTTACCA
CCAAGTCAAGGATTTTTAACTCCTCTTAAAAAATTAAAAAATAAAATTCA
AGAATATTTAAAATAAAATAAAAAAAAAAAAAAAA
Gap gap included
Contig length 1125
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4353681
End point 4352706
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U15952
List of clone(s) 

est1=FC-AD12F,1,580
est2=SLI124F,266,608
est3=FC-AD12Z,609,1125
Translated Amino Acid sequence 
DLAVAAVFSDCSSHPSSPINNNFYLSAASSANPSSSLLSALSRHSSSTTIQEDEAEIRPP
ASLQSSPKKFRSEEFNNNNNNNLDNDNDSDDEYDYYDFKNNESGVLLLVISSNQLIEVDY
NEEELQIFDRHFYLTDSVQKINSDSKLLGSVIKCQKTYFVVPFSTINTGIITQGDLTLVQ
KVYDPSTLVVGSKVFDSNKIAA---

---AFHSKLHPNLNVNGTVCLSLLGTWHGNKNELWIPEVSNLLQVLISIQGLILGCKEPY
FLEAGYDTQIGTHIGIRNSSIFNEDSYLLSLETICFYLKNQPILFKDIIQNHFKLELPAI
LNRIDQFLNQNNQANNGIKSLFCINLPPSQGFLTPLKKLKNKIQEYLK*nkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
DLAVAAVFSDCSSHPSSPINNNFYLSAASSANPSSSLLSALSRHSSSTTIQEDEAEIRPP
ASLQSSPKKFRSEEFNNNNNNNLDNDNDSDDEYDYYDFKNNESGVLLLVISSNQLIEVDY
NEEELQIFDRHFYLTDSVQKINSDSKLLGSVIKCQKTYFVVPFSTINTGIITQGDLTLVQ
KVYDPSTLVVGSKVFDSNKIAA---

---AFHSKLHPNLNVNGTVCLSLLGTWHGNKNELWIPEVSNLLQVLISIQGLILGCKEPY
FLEAGYDTQIGTHIGIRNSSIFNEDSYLLSLETICFYLKNQPILFKDIIQNHFKLELPAI
LNRIDQFLNQNNQANNGIKSLFCINLPPSQGFLTPLKKLKNKIQEYLK*nkkkkk

Frame B:
illwplffqivhlihhhqliitfiylqppllilhhlyfll*vdilqvlpfkrmklkldhl
llynlllknldlknliiiiiti*imimtamtnmiimilritkvvfyy**lavtn*lk*ii
mkrnykfsidisi*piqfkrlipivny*vql*nvkklis*yhfql*tlv*slkvi*l*fk
kfmihql*llvvkfliqiklll---

---rfipsyiqi*mlmvrfvlvc*vlgmeikmnfgyqrfqiyckc*lvfkv*y*vvknpi
s*rqvmilksehilvleilrfsmkipifylwklfvsi*kinqyylkisfkiisnlnylqs
*iesinf*ikiikptmvskvysvltyhqvkdf*lllkn*kikfkni*nkikkkkk

Frame C:
sccgrcffrlfissiitn***llficsllc*sfiiftfcfk*tffkyyhsrg*s*n*ttc
fftifs*ki*i*ri******qfr****qr*ri*ll*f*e*rkwcfiisn*q*pid*srl*
*rgitnfr*tflfnrfsskd*fr**iirfsykmsknlfrstifnykhwynhsr*fnfssk
sl*sinfscw**sf*fk*nccw---

---vsfqvtskfkc*wygls*fvrylawk*k*tldtrgfksiasvn*ysrfnirl*rtlf
lrgrl*ysnrntywy*kffdfq*rflsfifgnylflfkkstnti*ryhsksfqt*itcnl
k*nrsifksk*ssqqwyqkfily*lttksrifnss*kikk*nsrifkik*kkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15952-1 (Contig-U15952-1Q)
/CSM_Contig/Contig-U15952-1Q.Seq.d
         (1135 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15952-1 (Contig-U15952-1Q) /CSM_Contig/Conti...  1596  0.0
Contig-U10692-1 (Contig-U10692-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U16331-1 (Contig-U16331-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U16018-1 (Contig-U16018-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U15337-1 (Contig-U15337-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U03728-1 (Contig-U03728-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U12888-1 (Contig-U12888-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12069-1 (Contig-U12069-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U09581-1 (Contig-U09581-1Q) /CSM_Contig/Conti...    36  0.11

>Contig-U15952-1 (Contig-U15952-1Q) /CSM_Contig/Contig-U15952-1Q.Seq.d
          Length = 1135

 Score = 1596 bits (805), Expect = 0.0
 Identities = 835/835 (100%)
 Strand = Plus / Plus

                                                                        
Query: 243  caatttagataatgataatgacagcgatgacgaatatgattattatgattttaagaataa 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243  caatttagataatgataatgacagcgatgacgaatatgattattatgattttaagaataa 302

                                                                        
Query: 303  cgaaagtggtgttttattattagtaattagcagtaaccaattgattgaagtagattataa 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303  cgaaagtggtgttttattattagtaattagcagtaaccaattgattgaagtagattataa 362

                                                                        
Query: 363  tgaagaggaattacaaattttcgatagacatttctatttaaccgattcagttcaaaagat 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363  tgaagaggaattacaaattttcgatagacatttctatttaaccgattcagttcaaaagat 422

                                                                        
Query: 423  taattccgatagtaaattattaggttcagttataaaatgtcaaaaaacttatttcgtagt 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423  taattccgatagtaaattattaggttcagttataaaatgtcaaaaaacttatttcgtagt 482

                                                                        
Query: 483  accattttcaactataaacactggtataatcactcaaggtgatttaactttagttcaaaa 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483  accattttcaactataaacactggtataatcactcaaggtgatttaactttagttcaaaa 542

                                                                        
Query: 543  agtttatgatccatcaactttagttgttggtagtaaagtttttgattcaaataaaattgc 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  agtttatgatccatcaactttagttgttggtagtaaagtttttgattcaaataaaattgc 602

                                                                        
Query: 603  tgctggnnnnnnnnnngcgtttcattccaagttacatccaaatttaaatgttaatggtac 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603  tgctggnnnnnnnnnngcgtttcattccaagttacatccaaatttaaatgttaatggtac 662

                                                                        
Query: 663  ggtttgtcttagtttgttaggtacttggcatggaaataaaaatgaactttggataccaga 722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  ggtttgtcttagtttgttaggtacttggcatggaaataaaaatgaactttggataccaga 722

                                                                        
Query: 723  ggtttcaaatctattgcaagtgttaattagtattcaaggtttaatattaggttgtaaaga 782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  ggtttcaaatctattgcaagtgttaattagtattcaaggtttaatattaggttgtaaaga 782

                                                                        
Query: 783  accctatttcttagaggcaggttatgatactcaaatcggaacacatattggtattagaaa 842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  accctatttcttagaggcaggttatgatactcaaatcggaacacatattggtattagaaa 842

                                                                        
Query: 843  ttcttcgattttcaatgaagattcctatcttttatctttggaaactatttgtttctattt 902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  ttcttcgattttcaatgaagattcctatcttttatctttggaaactatttgtttctattt 902

                                                                        
Query: 903  aaaaaatcaaccaatactatttaaagatatcattcaaaatcatttcaaacttgaattacc 962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  aaaaaatcaaccaatactatttaaagatatcattcaaaatcatttcaaacttgaattacc 962

                                                                        
Query: 963  tgcaatcttaaatagaatcgatcaatttttaaatcaaaataatcaagccaacaatggtat 1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  tgcaatcttaaatagaatcgatcaatttttaaatcaaaataatcaagccaacaatggtat 1022

                                                                   
Query: 1023 caaaagtttattctgtattaacttaccaccaagtcaaggatttttaactcctctt 1077
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 caaaagtttattctgtattaacttaccaccaagtcaaggatttttaactcctctt 1077


 Score =  444 bits (224), Expect = e-124
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcttgctgtggccgctgttttttcagattgttcatctcatccatcatcaccaattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatcttgctgtggccgctgttttttcagattgttcatctcatccatcatcaccaattaat 60

                                                                       
Query: 61  aataacttttatttatctgcagcctcctctgctaatccttcatcatctttactttctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aataacttttatttatctgcagcctcctctgctaatccttcatcatctttactttctgct 120

                                                                       
Query: 121 ttaagtagacattcttcaagtactaccattcaagaggatgaagctgaaattagaccacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaagtagacattcttcaagtactaccattcaagaggatgaagctgaaattagaccacct 180

                                                       
Query: 181 gcttctttacaatcttctcctaaaaaatttagatctgaagaatt 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcttctttacaatcttctcctaaaaaatttagatctgaagaatt 224


>Contig-U10692-1 (Contig-U10692-1Q) /CSM_Contig/Contig-U10692-1Q.Seq.d
          Length = 1964

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  atccatcatcaccaattaat 60
           ||||||||||||||||||||
Sbjct: 278 atccatcatcaccaattaat 297


>Contig-U16331-1 (Contig-U16331-1Q) /CSM_Contig/Contig-U16331-1Q.Seq.d
          Length = 1675

 Score = 38.2 bits (19), Expect = 0.029
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 982  gatcaatttttaaatcaaa 1000
            |||||||||||||||||||
Sbjct: 492  gatcaatttttaaatcaaa 510


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,333
Number of Sequences: 8402
Number of extensions: 24333
Number of successful extensions: 2649
Number of sequences better than 10.0: 280
length of query: 1135
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1119
effective length of database: 7,941,110
effective search space: 8886102090
effective search space used: 8886102090
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 3
Homology vs DNA 
Query= Contig-U15952-1 (Contig-U15952-1Q) /CSM_Contig/Contig-U15952-1Q.Seq.d
         (1135 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C23734) Dictyostelium discoideum gamete cDNA, clone FC-AD12.     579   0.0    3
(C23735) Dictyostelium discoideum gamete cDNA, clone FC-AD12.     906   0.0    1
(AU062169) Dictyostelium discoideum slug cDNA, clone SLI124.      676   0.0    1
(BJ346531) Dictyostelium discoideum cDNA clone:dda24b07, 3' ...   507   e-139  1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   0.030  16
(AC184103) Mus musculus chromosome UNK clone CH35-73N5, comp...    52   0.046  1
(AC168558) Strongylocentrotus purpuratus clone R3-3091F22, W...    52   0.046  1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.24   18
(AC145573) Mus musculus BAC clone RP24-102J16 from chromosom...    44   0.29   5
(CU929674) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.40   2
(AC231621) Mus musculus chromosome Y clone CH36-265K22, *** ...    44   0.44   6
(AC132276) Mus musculus BAC clone RP24-344B8 from chromosome...    44   0.47   6
(AC023052) Homo sapiens chromosome 12 clone RP11-1056H16, WO...    36   0.48   5
(AC204658) Mus musculus BAC clone CH36-98B12 from chromosome...    44   0.55   7
(AC193248) Mus musculus BAC clone CH36-230L4 from chromosome...    44   0.61   6
(ET825485) CHO_OF772xl22f1.ab1 CHO_OF Nicotiana tabacum geno...    44   0.68   2
(AC114652) Mus musculus chromosome 18, clone RP24-156O17, co...    48   0.73   1
(AC165232) Mus musculus chromosome 7 clone RP23-110G24 map 7...    48   0.73   1
(DU862057) 70626 Tomato HindIII BAC Library Solanum lycopers...    48   0.73   1
(FE211390) L018C10 Antarctic fish Dissostichus mawsoni adult...    48   0.73   1
(AC151481) Medicago truncatula chromosome 8 clone mth2-3m11,...    44   0.98   3
(AE015450) Mycoplasma gallisepticum strain R complete genome.      40   1.1    17
(AC201922) Mus musculus BAC clone RP24-140J4 from chromosome...    44   1.1    5
(AC147146) Mus musculus BAC clone RP24-387M22 from chromosom...    44   1.2    5
(AC134863) Mus musculus BAC clone RP24-127M23 from chromosom...    44   1.2    5
(AC173998) Mus musculus BAC clone RP24-446E18 from chromosom...    44   1.2    7
(AC175820) Mus musculus BAC clone RP24-163C12 from chromosom...    44   1.4    5
(AC133173) Mus musculus BAC clone RP24-290N7 from chromosome...    44   1.4    5
(AC197501) Mus musculus BAC clone CH36-372A10 from chromosom...    44   1.4    5
(AC147257) Mus musculus BAC clone RP24-169I1 from chromosome...    44   1.5    6
(AC147623) Mus musculus BAC clone RP24-320G12 from chromosom...    44   1.5    6
(AC226611) Mus musculus chromosome Y clone CH36-92C14, WORKI...    44   1.6    7
(AC182367) Mus musculus BAC clone RP24-279D2 from chromosome...    44   1.6    5
(AC147166) Mus musculus BAC clone RP24-277F21 from chromosom...    44   1.7    6
(AC204727) Mus musculus BAC clone CH36-40N3 from chromosome ...    44   1.7    5
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   1.7    18
(AC195609) Mus musculus BAC clone CH36-34D5 from chromosome ...    44   1.7    5
(AC190176) Mus musculus BAC clone RP24-34D3 from chromosome ...    44   1.7    5
(AC205047) Mus musculus BAC clone CH36-28P2 from chromosome ...    44   1.7    5
(AC185963) Mus musculus chromosome UNK clone CH26-87M2, comp...    44   1.7    7
(AC144431) Medicago truncatula clone mth2-21i14, complete se...    38   1.7    7
(AC192082) Mus musculus BAC clone CH36-277F20 from chromosom...    44   1.8    5
(AM422018) Candidatus Phytoplasma australiense complete genome.    38   1.8    11
(AC192776) Mus musculus BAC clone RP24-121G7 from chromosome...    44   1.8    5
(AC134562) Mus musculus BAC clone RP24-120M11 from chromosom...    44   1.8    5
(AC198451) Mus musculus BAC clone CH36-134A4 from chromosome...    44   1.8    5
(AC165339) Mus musculus BAC clone RP24-116I9 from chromosome...    44   1.8    5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   1.9    12
(AC147157) Mus musculus BAC clone RP24-360P21 from chromosom...    44   1.9    5
(AC195678) Mus musculus BAC clone CH36-122K11 from chromosom...    44   1.9    5
(AC175055) Mus musculus BAC clone RP24-233C1 from chromosome...    44   1.9    5
(AC147118) Mus musculus BAC clone RP24-129M10 from chromosom...    44   2.0    5
(AC147253) Mus musculus BAC clone RP24-134K1 from chromosome...    44   2.0    6
(AC194794) Mus musculus BAC clone CH36-7C2 from chromosome y...    44   2.0    5
(AC225615) Mus musculus chromosome Y clone CH36-399D20, WORK...    44   2.1    7
(AC204655) Mus musculus chromosome Y clone RP24-195G14, WORK...    44   2.1    3
(AC139239) Mus musculus BAC clone RP24-201K23 from chromosom...    44   2.2    5
(AC212992) Mus musculus BAC clone CH36-186A16 from chromosom...    44   2.2    7
(EG345860) SAAH-aaa91c11.b1 Agen 0058 Schmidtea mediterranea...    38   2.3    2
(AC175746) Mus musculus chromosome Y clone RP24-387C1, compl...    44   2.4    6
(DV411986) NADZR78TF Aedes aegypti infected with Dengue viru...    36   2.4    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   2.4    12
(AC183826) Mus musculus BAC clone RP24-448N20 from chromosom...    44   2.4    6
(AC147149) Mus musculus BAC clone RP24-248P15 from chromosom...    44   2.4    6
(AC175706) Mus musculus BAC clone RP24-307B22 from chromosom...    44   2.4    5
(AC199231) Mus musculus BAC clone CH36-164P20 from chromosom...    44   2.5    6
(AC175386) Mus musculus BAC clone RP24-165A24 from chromosom...    44   2.5    5
(AC145466) Mus musculus BAC clone RP24-97F9 from chromosome ...    44   2.5    5
(AC182037) Mus musculus BAC clone RP24-50E9 from chromosome ...    44   2.5    5
(AC184106) Mus musculus chromosome UNK clone CH26-75A4, comp...    44   2.5    5
(AC186032) Mus musculus BAC clone RP24-448C12 from chromosom...    44   2.6    7
(AC200640) Mus musculus BAC clone CH36-453E22 from chromosom...    44   2.6    5
(AC140405) Mus musculus BAC clone RP24-176I18 from chromosom...    44   2.6    6
(AC194795) Mus musculus BAC clone CH36-194J13 from chromosom...    44   2.6    5
(AC147249) Mus musculus BAC clone RP24-85J13 from Y, complet...    44   2.6    6
(AC184104) Mus musculus chromosome UNK clone CH33-226F23, co...    44   2.6    5
(AC190163) Mus musculus chromosome Y clone RP24-212L3, compl...    44   2.7    6
(AC174444) Mus musculus BAC clone RP24-175D6 from chromosome...    44   2.7    4
(AC147996) Mus musculus BAC clone RP24-253L14 from chromosom...    44   2.8    6
(AC067869) Homo sapiens chromosome 2 clone RP11-748A23 map 2...    46   2.9    1
(AC180982) Strongylocentrotus purpuratus clone R3-3058I1, WO...    46   2.9    1
(AC168844) Strongylocentrotus purpuratus clone R3-13B14, WOR...    46   2.9    1
(FH287069) CHO_OF4199xb04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.9    1
(ED125830) AUAC-aab39e03.b1 Ascaris suum whole genome shotgu...    46   2.9    1
(DE060626) Oryzias latipes DNA, clone: ola1-105F09.R, genomi...    46   2.9    1
(CZ001429) OA_BBa0072A01.r OA_BBa Oryza alta genomic clone O...    46   2.9    1
(FF842639) EST_tthy_evl_886873 tthy_evl Thymallus thymallus ...    46   2.9    1
(EV367205) EST_cclu_evb_702626 ccluevb mixed_tissue Coregonu...    46   2.9    1
(AC204724) Mus musculus BAC clone CH36-425E18 from chromosom...    44   3.0    5
(AC201925) Mus musculus BAC clone RP24-122G9 from chromosome...    44   3.0    6
(AC123928) Mus musculus BAC clone RP24-390L8 from chromosome...    44   3.1    6
(AC184151) Mus musculus BAC clone RP24-91H6 from chromosome ...    44   3.1    5
(AC192332) Mus musculus BAC clone RP24-96D18 from chromosome...    44   3.2    4
(AC200894) Mus musculus BAC clone CH36-181O11 from chromosom...    44   3.2    6
(AC180188) Strongylocentrotus purpuratus clone R3-3P8, WORKI...    38   3.2    7
(AC195653) Mus musculus BAC clone CH36-278L19 from chromosom...    44   3.2    5
(AC180635) Strongylocentrotus purpuratus clone R3-3090K24, W...    38   3.2    7
(AC182252) Mus musculus BAC clone RP24-316G13 from chromosom...    44   3.2    6
(AC199103) Mus musculus BAC clone CH36-250N13 from chromosom...    44   3.2    5
(AC175830) Mus musculus BAC clone RP24-74O10 from chromosome...    44   3.3    5
(AC182553) Mus musculus BAC clone RP24-560H20 from chromosom...    44   3.3    4
(AC216018) Mus musculus BAC clone RP24-439E13 from chromosom...    44   3.4    5
(AC189026) Mus musculus BAC clone CH36-116L8 from chromosome...    44   3.5    6
(AC183977) Mus musculus BAC clone RP24-70E20 from chromosome...    44   3.5    5
(AC226884) Mus musculus chromosome Y clone CH36-74B22, WORKI...    44   3.7    6
(AC147141) Mus musculus BAC clone RP24-244J6 from chromosome...    44   3.7    2
(AC147142) Mus musculus BAC clone RP24-391G7 from chromosome...    44   3.7    6
(AC145603) Mus musculus BAC clone RP24-319B23 from chromosom...    44   3.8    5
(AC145583) Mus musculus BAC clone RP24-154F7 from Y, complet...    44   3.8    4
(AC134567) Mus musculus BAC clone RP24-199C24 from chromosom...    44   3.9    6
(AC182488) Mus musculus BAC clone RP24-65I16 from chromosome...    44   3.9    6
(AC182632) Mus musculus BAC clone RP24-70C5 from chromosome ...    44   4.1    5
(AC179217) Strongylocentrotus purpuratus clone R3-41D21, WOR...    34   4.1    7
(AC134846) Mus musculus BAC clone RP24-435N3 from chromosome...    44   4.1    5
(AC175056) Mus musculus BAC clone RP24-212M24 from chromosom...    44   4.2    6
(AC182389) Mus musculus BAC clone RP24-399J2 from chromosome...    44   4.2    6
(AC147606) Mus musculus BAC clone RP24-359I4 from chromosome...    44   4.2    5
(AC173706) Mus musculus BAC clone RP24-264J10 from chromosom...    44   4.2    4
(AC145581) Mus musculus BAC clone RP24-151A14 from chromosom...    44   4.2    5
(AC175662) Mus musculus BAC clone RP24-425D4 from chromosome...    44   4.3    7
(AC214005) Mus musculus chromosome Y clone CH36-260P9, WORKI...    44   4.3    6
(AC190181) Mus musculus BAC clone CH36-45A22 from chromosome...    44   4.3    4
(AC200573) Mus musculus BAC clone CH36-326M22 from chromosom...    44   4.4    6
(AC199228) Mus musculus BAC clone CH36-29A5 from chromosome ...    44   4.5    6
(AC190165) Mus musculus BAC clone RP24-288O12 from chromosom...    44   4.5    6
(AC145567) Mus musculus BAC clone RP24-89I11 from chromosome...    44   4.6    5
(AC194619) Mus musculus BAC clone CH36-324J18 from chromosom...    44   4.6    6
(AC134430) Mus musculus BAC clone RP24-354H6 from chromosome...    44   4.7    2
(AC192710) Mus musculus BAC clone RP24-279G23 from chromosom...    44   4.8    6
(AP009639) Lotus japonicus genomic DNA, clone: LjB06H14, BM1...    42   4.9    5
(AC182254) Mus musculus BAC clone RP24-66O22 from chromosome...    44   5.1    6
(AC191863) Mus musculus BAC clone RP24-213F22 from chromosom...    44   5.1    2
(AC136638) Mus musculus BAC clone RP24-369F2 from chromosome...    44   5.2    5
(AC191862) Mus musculus BAC clone RP24-225F20 from chromosom...    44   5.2    5
(AC192713) Mus musculus BAC clone CH36-6J7 from chromosome y...    44   5.2    4
(AC183522) Mus musculus BAC clone RP24-376H9 from chromosome...    44   5.2    5
(AC211232) Mus musculus chromosome Y clone CH36-2G4, WORKING...    44   5.3    4
(AC184184) Strongylocentrotus purpuratus clone R3-3021D6, WO...    36   5.3    8
(AC231651) Mus musculus chromosome Y clone RP24-543B22, *** ...    44   5.3    3
(CP000940) Clostridium botulinum B1 str. Okra plasmid pCLD, ...    32   5.3    8
(AC147626) Mus musculus BAC clone RP24-361F8 from chromosome...    44   5.4    2
(CR855331) Zebrafish DNA sequence from clone CH211-153F2 in ...    32   5.4    2
(AC212858) Mus musculus chromosome Y clone RP24-479P4, WORKI...    44   5.4    6
(AC147264) Mus musculus BAC clone RP24-225P12 from chromosom...    44   5.4    6
(AC137982) Mus musculus BAC clone RP24-313G24 from Y, comple...    44   5.5    6
(AC212853) Mus musculus chromosome Y clone CH36-116M15, WORK...    44   5.5    5
(FP016057) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   5.5    2
(AC195264) Mus musculus BAC clone CH36-328D8 from chromosome...    44   5.7    6
(AC182555) Mus musculus BAC clone RP24-89D11 from chromosome...    44   5.8    7
(AC147461) Mus musculus BAC clone RP24-304I19 from chromosom...    44   5.8    5
(AC145344) Mus musculus BAC clone RP24-134P13 from chromosom...    44   5.9    4
(AC174445) Mus musculus BAC clone RP24-115O3 from chromosome...    44   6.0    6
(AC183524) Mus musculus BAC clone RP24-242J6 from chromosome...    44   6.0    5
(AC136639) Mus musculus BAC clone RP24-392N7 from chromosome...    44   6.0    2
(AC184107) Mus musculus chromosome UNK clone CH33-213P12, co...    44   6.0    4
(AC175316) Mus musculus BAC clone RP24-346L16 from chromosom...    44   6.1    2
(AC135807) Mus musculus BAC clone RP24-303J7 from chromosome...    44   6.3    2
(AC175743) Mus musculus BAC clone RP24-44F3 from chromosome ...    44   6.3    5
(AC182487) Mus musculus BAC clone RP24-104A17 from chromosom...    44   6.3    4
(AC175671) Mus musculus BAC clone RP24-313O14 from chromosom...    44   6.3    5
(AC182365) Mus musculus BAC clone RP24-448P6 from chromosome...    44   6.4    2
(AC214154) Mus musculus chromosome Y clone CH36-23G10, WORKI...    44   6.4    4
(AC194528) Mus musculus BAC clone CH36-336M24 from chromosom...    44   6.4    6
(AC145582) Mus musculus BAC clone RP24-357M16 from chromosom...    44   6.5    2
(AC202687) Mus musculus BAC clone CH36-202N10 from chromosom...    44   6.6    2
(AC183415) Mus musculus BAC clone RP24-121M4 from chromosome...    44   6.7    6
(AC175114) Mus musculus BAC clone RP24-304C8 from chromosome...    44   6.7    2
(AC226447) Mus musculus chromosome Y clone RP24-233B19, WORK...    44   6.8    2
(AC222559) Mus musculus BAC clone RP24-54G6 from chromosome ...    44   6.9    2
(AC184102) Mus musculus BAC clone RP24-155F12 from chromosom...    44   7.0    2
(AC200572) Mus musculus chromosome Y clone RP24-260I18, WORK...    44   7.0    2
(AC134541) Mus musculus BAC clone RP24-405G18 from Y, comple...    44   7.1    5
(AC175707) Mus musculus BAC clone RP24-89D4 from chromosome ...    44   7.1    6
(AC200643) Mus musculus BAC clone CH36-40G13 from chromosome...    44   7.2    6
(AC175669) Mus musculus BAC clone RP24-328P1 from chromosome...    44   7.2    3
(EI042737) hha0010bb02.g1 hha Oryza australiensis genomic cl...    34   7.2    2
(AC223406) Mus musculus chromosome Y clone CH36-238O21, WORK...    44   7.4    2
(AC184150) Mus musculus BAC clone RP24-148N3 from chromosome...    44   7.5    2
(AC212988) Mus musculus chromosome Y clone RP24-306G20, WORK...    44   7.5    3
(AC225567) Mus musculus chromosome Y clone CH36-371C23, WORK...    44   7.5    2
(ER295451) 1092343643172 Global-Ocean-Sampling_GS-34-01-01-1...    40   7.7    2
(AC174442) Mus musculus BAC clone RP24-542K12 from chromosom...    44   7.7    6
(AC147113) Mus musculus BAC clone RP24-120I13 from chromosom...    44   7.7    6
(GF081092) pRRL2:Newb:20080411:91001 USMARC Pig Breed SNP Di...    34   7.7    2
(AC131768) Mus musculus BAC clone RP24-289C2 from chromosome...    44   7.8    3
(AC195651) Mus musculus BAC clone CH36-433P10 from chromosom...    44   7.9    2
(AC147252) Mus musculus BAC clone RP24-116A5 from chromosome...    44   7.9    6
(AC133603) Mus musculus BAC clone RP24-282H21 from chromosom...    44   8.1    3
(AC192084) Mus musculus chromosome Y clone CH36-346D22, *** ...    44   8.2    5
(AC215266) Mus musculus chromosome Y clone CH36-28F14, WORKI...    44   8.6    6
(AC140923) Mus musculus BAC clone RP24-373O2 from chromosome...    44   8.8    5
(EG583195) AGENCOURT_88126229 NIH_ZGC_26 Danio rerio cDNA cl...    40   9.3    2
(BX950169) Zebrafish DNA sequence from clone CH211-203N19 in...    38   9.4    6
(AC174382) Mus musculus BAC clone RP24-94K20 from chromosome...    44   9.5    6
(AC185239) Mus musculus BAC clone RP24-318B23 from chromosom...    44   9.5    3
(AC147107) Mus musculus BAC clone RP24-69F17 from chromosome...    44   9.6    5

>(C23734) Dictyostelium discoideum gamete cDNA, clone FC-AD12.
          Length = 579

 Score =  579 bits (292), Expect(3) = 0.0
 Identities = 292/292 (100%)
 Strand = Plus / Plus


Query: 262 gacagcgatgacgaatatgattattatgattttaagaataacgaaagtggtgttttatta 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gacagcgatgacgaatatgattattatgattttaagaataacgaaagtggtgttttatta 321


Query: 322 ttagtaattagcagtaaccaattgattgaagtagattataatgaagaggaattacaaatt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttagtaattagcagtaaccaattgattgaagtagattataatgaagaggaattacaaatt 381


Query: 382 ttcgatagacatttctatttaaccgattcagttcaaaagattaattccgatagtaaatta 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcgatagacatttctatttaaccgattcagttcaaaagattaattccgatagtaaatta 441


Query: 442 ttaggttcagttataaaatgtcaaaaaacttatttcgtagtaccattttcaactataaac 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttaggttcagttataaaatgtcaaaaaacttatttcgtagtaccattttcaactataaac 501


Query: 502 actggtataatcactcaaggtgatttaactttagttcaaaaagtttatgatc 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 actggtataatcactcaaggtgatttaactttagttcaaaaagtttatgatc 553

 Score =  436 bits (220), Expect(3) = 0.0
 Identities = 220/220 (100%)
 Strand = Plus / Plus


Query: 1   gatcttgctgtggccgctgttttttcagattgttcatctcatccatcatcaccaattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatcttgctgtggccgctgttttttcagattgttcatctcatccatcatcaccaattaat 60


Query: 61  aataacttttatttatctgcagcctcctctgctaatccttcatcatctttactttctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aataacttttatttatctgcagcctcctctgctaatccttcatcatctttactttctgct 120


Query: 121 ttaagtagacattcttcaagtactaccattcaagaggatgaagctgaaattagaccacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaagtagacattcttcaagtactaccattcaagaggatgaagctgaaattagaccacct 180


Query: 181 gcttctttacaatcttctcctaaaaaatttagatctgaag 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcttctttacaatcttctcctaaaaaatttagatctgaag 220

 Score = 54.0 bits (27), Expect(3) = 0.0
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 554 catcaactttagttgttggtagtaaag 580
           |||||||||||||||||||||||||||
Sbjct: 553 catcaactttagttgttggtagtaaag 579

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,385,648,160
Number of extensions: 82754795
Number of successful extensions: 6782452
Number of sequences better than 10.0: 197
Length of query: 1135
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1111
Effective length of database: 96,409,374,237
Effective search space: 107110814777307
Effective search space used: 107110814777307
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U15952-1 (Contig-U15952-1Q) /CSM_Contig/Contig-U15952-1Q.Seq.d
         (1135 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP002909_15(AP002909|pid:none) Oryza sativa Japonica Group genom...   119   3e-25
(Q9ZVX1) RecName: Full=Probable ubiquitin carrier protein E2 23;...   115   2e-24
AC144724_5(AC144724|pid:none) Medicago truncatula clone mth2-7g1...   108   4e-22
AC019018_29(AC019018|pid:none) Arabidopsis thaliana chromosome 1...   107   8e-22
BT087279_1(BT087279|pid:none) Zea mays full-length cDNA clone ZM...   107   1e-21
CP001323_910(CP001323|pid:none) Micromonas sp. RCC299 chromosome...   107   1e-21
(Q9LUQ5) RecName: Full=Probable ubiquitin carrier protein E2 25;...   105   3e-21
AK241747_1(AK241747|pid:none) Oryza sativa Japonica Group cDNA, ...   103   1e-20
AP008211_1919(AP008211|pid:none) Oryza sativa (japonica cultivar...   103   1e-20
AC116957_103(AC116957|pid:none) Dictyostelium discoideum chromos...   102   3e-20
AC104709_17(AC104709|pid:none) Oryza sativa (japonica cultivar-g...   101   6e-20
AK117792_1(AK117792|pid:none) Arabidopsis thaliana At1g53020 mRN...   100   7e-20
EF147689_1(EF147689|pid:none) Populus trichocarpa clone WS0124_F...   100   1e-19
AC093493_16(AC093493|pid:none) Oryza sativa (japonica cultivar-g...    99   3e-19
BC025977_1(BC025977|pid:none) Homo sapiens ubiquitin-conjugating...    97   1e-18
BT088289_1(BT088289|pid:none) Zea mays full-length cDNA clone ZM...    97   1e-18
EU975996_1(EU975996|pid:none) Zea mays clone 508097 unknown mRNA.      97   1e-18
AL607039_1(AL607039|pid:none) Mouse DNA sequence from clone RP23...    96   2e-18
AK045398_1(AK045398|pid:none) Mus musculus adult male corpora qu...    96   2e-18
(Q6ZPJ3) RecName: Full=Ubiquitin-conjugating enzyme E2 O;       ...    96   2e-18
AK022940_1(AK022940|pid:none) Homo sapiens cDNA FLJ12878 fis, cl...    96   3e-18
AK024657_1(AK024657|pid:none) Homo sapiens cDNA: FLJ21004 fis, c...    96   3e-18
(Q8VY10) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...    96   3e-18
BC036820_1(BC036820|pid:none) Homo sapiens ubiquitin-conjugating...    96   3e-18
(Q9H6E6) RecName: Full=Ubiquitin-conjugating enzyme E2 O;       ...    96   3e-18
AP005839_5(AP005839|pid:none) Oryza sativa Japonica Group genomi...    96   3e-18
AB051521_1(AB051521|pid:none) Homo sapiens mRNA for KIAA1734 pro...    96   3e-18
AL832432_1(AL832432|pid:none) Homo sapiens mRNA; cDNA DKFZp762G0...    96   3e-18
AP002481_1(AP002481|pid:none) Oryza sativa Japonica Group genomi...    94   1e-17
AP002481_13(AP002481|pid:none) Oryza sativa Japonica Group genom...    90   1e-16
FN357303_18(FN357303|pid:none) Schistosoma mansoni genome sequen...    88   5e-16
AK069430_1(AK069430|pid:none) Oryza sativa Japonica Group cDNA c...    87   8e-16
AC135420_4(AC135420|pid:none) Oryza sativa (japonica cultivar-gr...    87   8e-16
BT087381_1(BT087381|pid:none) Zea mays full-length cDNA clone ZM...    87   8e-16
(Q9NR09) RecName: Full=Baculoviral IAP repeat-containing protein...    87   1e-15
AK023848_1(AK023848|pid:none) Homo sapiens cDNA FLJ13786 fis, cl...    87   1e-15
AB033115_1(AB033115|pid:none) Homo sapiens mRNA for KIAA1289 pro...    87   1e-15
AC019018_30(AC019018|pid:none) Arabidopsis thaliana chromosome 1...    86   3e-15
T31067(T31067) BIR repeat containing ubiquitin-conjugating enzym...    86   3e-15
AC144478_25(AC144478|pid:none) Medicago truncatula clone mth2-20...    85   4e-15
BC004525_1(BC004525|pid:none) Homo sapiens ubiquitin-conjugating...    79   3e-13
AE017352_218(AE017352|pid:none) Cryptococcus neoformans var. neo...    77   1e-12
BT037909_1(BT037909|pid:none) Zea mays full-length cDNA clone ZM...    76   3e-12
AC146750_26(AC146750|pid:none) Medicago truncatula clone mth2-16...    75   4e-12
AC151521_19(AC151521|pid:none) Medicago truncatula chromosome 7 ...    75   6e-12
AY817492_1(AY817492|pid:none) Zea mays ubiquitin-conjugating enz...    72   4e-11
CU640366_901(CU640366|pid:none) Podospora anserina genomic DNA c...    67   2e-09
AM270022_46(AM270022|pid:none) Aspergillus niger contig An02c027...    65   6e-09
FN357618_8(FN357618|pid:none) Schistosoma mansoni genome sequenc...    51   9e-05
T15350(T15350)hypothetical protein B0404.2 - Caenorhabditis eleg...    50   1e-04
(Q11076) RecName: Full=Probable ubiquitin-conjugating enzyme pro...    50   1e-04
AY815595_1(AY815595|pid:none) Schistosoma japonicum SJCHGC08994 ...    50   1e-04
AM920427_32(AM920427|pid:none) Penicillium chrysogenum Wisconsin...    49   4e-04
(Q6PCF7) RecName: Full=Ubiquitin-conjugating enzyme E2 Z;       ...    47   0.001
AB171060_1(AB171060|pid:none) Macaca fascicularis brain cDNA clo...    47   0.001
(Q3B7D1) RecName: Full=Ubiquitin-conjugating enzyme E2 Z;       ...    46   0.003
AB025426_1(AB025426|pid:none) Homo sapiens mRNA for HOYS7, compl...    46   0.003
BC076491_1(BC076491|pid:none) Danio rerio zgc:92419, mRNA (cDNA ...    46   0.003
AK023917_1(AK023917|pid:none) Homo sapiens cDNA FLJ13855 fis, cl...    46   0.003
(Q9H832) RecName: Full=Ubiquitin-conjugating enzyme E2 Z;       ...    46   0.003
BC015169_1(BC015169|pid:none) Homo sapiens ubiquitin-conjugating...    46   0.003
AK168942_1(AK168942|pid:none) Mus musculus 17 days pregnant adul...    46   0.003
AK149770_1(AK149770|pid:none) Mus musculus bone marrow macrophag...    46   0.003
AK153328_1(AK153328|pid:none) Mus musculus bone marrow macrophag...    46   0.003
BT083710_1(BT083710|pid:none) Zea mays full-length cDNA clone ZM...    39   0.26
CU640366_1044(CU640366|pid:none) Podospora anserina genomic DNA ...    38   0.58
AP007157_802(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    38   0.76
CU633867_44(CU633867|pid:none) Podospora anserina genomic DNA ch...    38   0.76
AM910989_124(AM910989|pid:none) Plasmodium knowlesi strain H chr...    38   0.76
AM270070_2(AM270070|pid:none) Aspergillus niger contig An04c0090...    38   0.76
CR940352_518(CR940352|pid:none) Theileria annulata strain Ankara...    38   0.76
CP001332_113(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    37   1.3
AL111168_1240(AL111168|pid:none) Campylobacter jejuni subsp. jej...    37   1.3
CP000025_1453(CP000025|pid:none) Campylobacter jejuni RM1221, co...    37   1.3
(P40984) RecName: Full=SUMO-conjugating enzyme ubc9;          EC...    37   1.7
CR954209_51(CR954209|pid:none) Ostreococcus tauri strain OTTH059...    37   1.7
FM992695_754(FM992695|pid:none) Candida dubliniensis CD36 chromo...    36   2.2
AE014188_352(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.2
AE016818_402(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    36   2.9
AB263748_1(AB263748|pid:none) Ipomoea trifida DNA, self-incompat...    36   2.9
CP000078_40(CP000078|pid:none) Leishmania major strain Friedlin ...    35   3.8
FN392320_763(FN392320|pid:none) Pichia pastoris GS115 chromosome...    35   3.8
AM055943_115(AM055943|pid:none) Toxoplasma gondii RH, genomic DN...    35   3.8
CR380950_30(CR380950|pid:none) Candida glabrata strain CBS138 ch...    35   3.8
AM502220_31(AM502220|pid:none) Leishmania infantum chromosome 2.       35   3.8
AC008031_6(AC008031|pid:none) Trypanosoma brucei chromosome 2 cl...    35   3.8
EF084113_1(EF084113|pid:none) Picea sitchensis clone WS0273_F01 ...    35   3.8
EF083895_1(EF083895|pid:none) Picea sitchensis clone WS0291_D16 ...    35   3.8
AF325019_1(AF325019|pid:none) Arabidopsis thaliana AT4g27960 (AT...    35   4.9
BT053431_1(BT053431|pid:none) Medicago truncatula clone MTYFP_FQ...    35   4.9
EU971073_1(EU971073|pid:none) Zea mays clone 356956 unknown mRNA.      35   4.9
EU966933_1(EU966933|pid:none) Zea mays clone 298244 unknown mRNA.      35   4.9
DQ207855_1(DQ207855|pid:none) Solanum tuberosum clone 078A09 ubi...    35   4.9
EF145004_1(EF145004|pid:none) Populus trichocarpa clone WS0111_H...    35   4.9
EU170471_1(EU170471|pid:none) Eucommia ulmoides ubiquitin conjug...    35   4.9
EF585789_1(EF585789|pid:none) Sonneratia caseolaris isolate Sonn...    35   4.9
AY389716_1(AY389716|pid:none) Hyacinthus orientalis ubiquitin-co...    35   4.9
AM464235_1(AM464235|pid:none) Vitis vinifera contig VV78X153506....    35   4.9
EF147515_1(EF147515|pid:none) Populus trichocarpa clone WS0123_B...    35   4.9
AY082004_1(AY082004|pid:none) Gossypium hirsutum ubiquitin-conju...    35   4.9
DQ284472_1(DQ284472|pid:none) Solanum tuberosum clone 116D11 ubi...    35   4.9
EU284954_1(EU284954|pid:none) TSA: Elaeis guineensis EgEfMPOB001...    35   4.9
AY489135_1(AY489135|pid:none) Capsicum annuum ubiquitin-conjugat...    35   4.9
EF146753_1(EF146753|pid:none) Populus trichocarpa clone WS01213_...    35   4.9
AY082009_1(AY082009|pid:none) Gossypium thurberi ubiquitin-conju...    35   4.9
EF146072_1(EF146072|pid:none) Populus trichocarpa clone WS0115_F...    35   4.9
AY082005_1(AY082005|pid:none) Gossypium hirsutum ubiquitin-conju...    35   4.9
AC098695_11(AC098695|pid:none) Oryza sativa (japonica cultivar-g...    35   4.9
AJ580839_1(AJ580839|pid:none) Nicotiana benthamiana mRNA for SUM...    35   4.9
(P35131) RecName: Full=Ubiquitin-conjugating enzyme E2 8;       ...    35   4.9
BT070302_1(BT070302|pid:none) Picea sitchensis clone WS02719_E19...    35   4.9
EF144962_1(EF144962|pid:none) Populus trichocarpa clone WS0111_C...    35   4.9
AX250463_1(AX250463|pid:none) Sequence 69 from Patent WO0168863.       35   4.9
EU586201_1(EU586201|pid:none) Malus x domestica cultivar Fuji ub...    35   4.9
EU593895_1(EU593895|pid:none) Brassica napus E2 ubiquitin-conjug...    35   4.9
EU962124_1(EU962124|pid:none) Zea mays clone 240421 ubiquitin-co...    35   4.9
DQ027023_1(DQ027023|pid:none) Arabidopsis thaliana ubiquitinatin...    35   4.9
DQ887084_1(DQ887084|pid:none) Arachis hypogaea ubiquitin-conjuga...    35   4.9
BT071650_1(BT071650|pid:none) Picea sitchensis clone WS0294_N24 ...    35   4.9
DQ222513_1(DQ222513|pid:none) Solanum tuberosum clone 117E03 ubi...    35   4.9
BT070291_1(BT070291|pid:none) Picea sitchensis clone WS02718_B23...    35   4.9
AM448784_1(AM448784|pid:none) Vitis vinifera contig VV78X077229....    35   4.9
EF585788_1(EF585788|pid:none) Sonneratia alba isolate Sonn199_1 ...    35   4.9
(P35135) RecName: Full=Ubiquitin-conjugating enzyme E2-17 kDa;  ...    35   4.9
EU952667_1(EU952667|pid:none) Zea mays clone 1285993 ubiquitin-c...    35   4.9
DQ788622_1(DQ788622|pid:none) Triticum turgidum subsp. durum put...    35   4.9
AF008910_1(AF008910|pid:none) Prunus armeniaca ubiquitin-conjuga...    35   4.9
(P35132) RecName: Full=SUMO-conjugating enzyme UBC9;          EC...    35   4.9
EU586200_1(EU586200|pid:none) Malus x domestica cultivar Fuji ub...    35   4.9
(P35133) RecName: Full=Ubiquitin-conjugating enzyme E2 10;      ...    35   4.9
BT070503_1(BT070503|pid:none) Picea sitchensis clone WS02732_O01...    35   6.4
AL117195_1(AL117195|pid:none) Caenorhabditis elegans YAC Y57A10A...    35   6.4
AF091106_1(AF091106|pid:none) Arabidopsis thaliana E2 ubiquitin-...    35   6.4
EU972165_1(EU972165|pid:none) Zea mays clone 376667 ubiquitin-co...    35   6.4
CU928174_519(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    35   6.4
AK059627_1(AK059627|pid:none) Oryza sativa Japonica Group cDNA c...    35   6.4
EF147621_1(EF147621|pid:none) Populus trichocarpa clone WS0123_O...    35   6.4
(Q9FKT3) RecName: Full=Ubiquitin carrier protein E2 30;         ...    35   6.4
EU853458_1(EU853458|pid:none) Cucumis melo var. cantalupensis ub...    35   6.4
AC007764_2(AC007764|pid:none) Genomic sequence for Arabidopsis t...    35   6.4
GM966539_1(GM966539|pid:none) Sequence 1871 from Patent WO200814...    35   6.4
BT061792_1(BT061792|pid:none) Zea mays full-length cDNA clone ZM...    35   6.4
CP000497_479(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    35   6.4
(Q94F47) RecName: Full=Ubiquitin carrier protein E2 28;         ...    35   6.4
GM966541_1(GM966541|pid:none) Sequence 1873 from Patent WO200814...    35   6.4
(P50623) RecName: Full=SUMO-conjugating enzyme UBC9;          EC...    35   6.4
U15971_1(U15971|pid:none) Oryza sativa ubiquitin conjugating enz...    34   8.4
FN359260_2(FN359260|pid:none) Schistosoma mansoni genome sequenc...    34   8.4
S61417(S61417;S61418;S72311)ubiquitin-protein ligase (EC 6.3.2.1...    34   8.4
CP000501_179(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    34   8.4
CP000473_3916(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    34   8.4
CR382128_908(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    34   8.4
FN315596_1(FN315596|pid:none) Schistosoma japonicum isolate Anhu...    34   8.4
BT034602_1(BT034602|pid:none) Zea mays full-length cDNA clone ZM...    34   8.4

>AP002909_15(AP002909|pid:none) Oryza sativa Japonica Group genomic
            DNA, chromosome 1, PAC clone:P0044F08.
          Length = 1067

 Score =  119 bits (297), Expect = 3e-25
 Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
 Frame = +1

Query: 622  FHS---KLHPNLNVNGTVCLSLLGTWHGNKNELWIPEVSNLLQVLISIQGLILGCKEPYF 792
            +HS   +++PNL V+G VCLSLL TW G  NE+W P  S++LQVL+S+QGL+L  ++PYF
Sbjct: 878  YHSGGLRVNPNLYVDGKVCLSLLNTWTGRGNEVWDPSSSSILQVLVSLQGLVLN-EKPYF 936

Query: 793  LEAGYDTQIGTHIGIRNSSIFNEDSYLLSLETICFYLKNQPILFKDIIQNHFKLELPAIL 972
             EAGY+ Q+GT  G +N+  +NE++YLLSL+++ + L+  P+ F+D  ++HF      IL
Sbjct: 937  NEAGYEKQVGTVEGEKNALPYNENTYLLSLKSMLYILRRPPMHFEDFAKSHFSKRGKYIL 996

Query: 973  NRIDQFLNQN 1002
               + +L  N
Sbjct: 997  KACEAYLQGN 1006

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,321,182,172
Number of extensions: 21373604
Number of successful extensions: 49032
Number of sequences better than 10.0: 154
Number of HSP's gapped: 48939
Number of HSP's successfully gapped: 154
Length of query: 378
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 248
Effective length of database: 630,428,194
Effective search space: 156346192112
Effective search space used: 156346192112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15952-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0