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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15943-1
Contig ID Contig-U15943-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15943-1 (Contig-U15943-1Q) /CSM_Contig/Contig-U15943-1Q.Seq.d
AAAAGATAGAGAAGAAAGAAAACTTGAACGTGAGAAGGAACTTGAACGTG
AACGTGAGAAAGAACTTGAGCGTGAGCGTGAACGTGAACAACGTCGTCTT
GAAAGAGAGAGGGATGAAATTGAACGTGAGCAACGTCGTCTTGAAAAAAT
TCAACACGAAAAGGAGGAAAAGGAAAGATTAGAAAGAGAATTAAAAGAAA
AAGAAGAACGTGAACTCAAAGAAAAGAAAGACAAGATAAATTAGACCAAT
CTCAAAAAGAAAAACAAATTAAAATTGAATCTGAAAAAGAAAGAAGAAAA
TTAGTTTTAGAGAAAACAAAATCAACTTTAACACATGATCAATTAATTAA
ATTAACAAAATCAAATATTACAATTACCAATACAAATAATACAAATACAA
ATACAAATAACAATAAAAATAAAAATAATAAATTAAAATCAACATCATTT
GGATTACAAATTGATCATGAAGGTATTAGAATTAAAAAGGAACAATTAAA
ATTAGA----------GATTTAAGAAAATTATTTGTTGGTGGTATTAATT
GTGATGATATTACTGATAGTAAAATTGTTAAAGATTTAAAGAAATTGGAA
AAAATTCGTGATAAAAGAATTCAATCATTATTAAAACTTTTTGATAAATT
TGGTAAAGTTCAAAAACGTACTATTAATTCATCAAAAGGTTTATTCTTTA
TCACTTATGTCGATATTGAAAGTTGTACAAAAGCAATTCAATTTTATTCA
ATTAAAGAAAATAGAAAAGCAGCAATTGACGAAATCTCAAAATTGCTGCT
TTTCTATTTTCTTTGATTTAAGAAAATTATTTGTTGGTGGTATTAATTGT
GATGATATTACTGATAGTAAAATTGTTAAAGATTTAAAGAAATTGGAAAA
AATTCGTGATAAAAGAATTCAATCATTATTAAAACTTTTTGATAAATTTG
GTAAAGTTCAAAAACGTACTATTAATTCATCAAAAGGTTTATTCTTTATC
ACTTATGTCGATATTGAAAGTTGTACAAAAGCAATTCAATTTTATTCAAT
TAAAGAAAATAGAAAAGCAGCAATTGACGAAATCTCAAAATTACCAAGAA
AAATCACCACTTTATAATCCAAATAAAAAATTCTATGTTAAAATTGTAAA
ATCAAATGAAAAAGCTAAAAAGAAACAAATTTTTGATAAACAAAAAATTG
AAAATCTTAAAGCCACTGCTAAAAATGAATTACAAAAAGAACAAGATGCT
GAATTTGATGATTGGGAAATTGCAAAATAAAAAAAAAAAAAAAAAAAAAG
AAATAAATATTATTTTTTTAATTATTAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 1338
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 3
Number of EST 4
Link to clone list U15943
List of clone(s) 

est1=FC-AA18F,1,506
est2=VSD589Z,507,1238
est3=VSG209Z,606,1230
est4=FC-AA18Z,1045,1338
Translated Amino Acid sequence 
kr*rrkkt*t*egt*t*t*ert*a*a*t*ttss*kreg*n*t*atss*knstrkggkgki
rkrikrkrrt*TQRKERQDKLDQSQKEKQIKIESEKERRKLVLEKTKSTLTHDQLIKLTK
SNITITNTNNTNTNTNNNKNKNNKLKSTSFGLQIDHEGIRIKKEQLKL---

---DLRKLFVGGINCDDITDSKIVKDLKKLEKIRDKRIQSLLKLFDKFGKVQKRTINSSK
GLFFITYVDIESCTKAIQFYSIKENRKAAIDEISKLLLFYFL*fkkiicwwy*l**yy**
*nc*rfkeigkns**knsiiiktf**iw*ssktyy*fikrfilyhlcry*klyksnsilf
n*rk*kssn*rnlkitkknhhfiiqiknsmlkl*nqmkklkrnkflinkklkilkpllkm
nykknkmlnlmigklqnkkkkkkkeiniifliikkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kr*rrkkt*t*egt*t*t*ert*a*a*t*ttss*kreg*n*t*atss*knstrkggkgki
rkrikrkrrt*TQRKERQDKLDQSQKEKQIKIESEKERRKLVLEKTKSTLTHDQLIKLTK
SNITITNTNNTNTNTNNNKNKNNKLKSTSFGLQIDHEGIRIKKEQLKL---

---DLRKLFVGGINCDDITDSKIVKDLKKLEKIRDKRIQSLLKLFDKFGKVQKRTINSSK
GLFFITYVDIESCTKAIQFYSIKENRKAAIDEISKLLLFYFL*fkkiicwwy*l**yy**
*nc*rfkeigkns**knsiiiktf**iw*ssktyy*fikrfilyhlcry*klyksnsilf
n*rk*kssn*rnlkitkknhhfiiqiknsmlkl*nqmkklkrnkflinkklkilkpllkm
nykknkmlnlmigklqnkkkkkkkeiniifliikkkkkkk

Frame B:
kdreerklerekelererekelererereqrrlererdeiereqrrlekiqhekeekerl
erelkekeerelkekkdkin*tnlkkknklklnlkkkeen*f*rkqnql*hmin*ln*qn
qilqlpiqiiqiqiqitikikiin*nqhhldyklimkvlelkrnn*n*---

---i*enyllvvlivmillivkllki*rnwkkfvikefnhy*nflinlvkfknvllihqk
vyslslmsilkvvqkqfnfiqlkkiekqqltksqnccfsiffdlrklfvggincdditds
kivkdlkklekirdkriqsllklfdkfgkvqkrtinsskglffityvdiesctkaiqfys
ikenrkaaideisklprkittl*sk*kilc*nckik*ks*ketnf**tkn*ks*shc*k*
itkrtrc*i**lgnckikkkkkkkk*ilff*llkkkkkkk

Frame C:
kiekkenlnvrrnlnvnvrknlsvsvnvnnvvlkergmklnvsnvvlkkfntkrrkrkd*
ken*kkkknvnskkrktr*irpiskrktn*n*i*krkkkisfrenkinfnt*sin*inki
kyynyqyk*ykykyk*q*k*k**ikiniiwitn*s*ry*n*kgtikir---

---fkkiicwwy*l**yy***nc*rfkeigkns**knsiiiktf**iw*ssktyy*fikr
filyhlcry*klyksnsilfn*rk*kssn*rnlkiaaflfsli*enyllvvlivmilliv
kllki*rnwkkfvikefnhy*nflinlvkfknvllihqkvyslslmsilkvvqkqfnfiq
lkkiekqqltksqnyqeksplynpnkkfyvkivksnekakkkqifdkqkienlkatakne
lqkeqdaefddweiak*kkkkkkrnkyyffny*kkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15943-1 (Contig-U15943-1Q)
/CSM_Contig/Contig-U15943-1Q.Seq.d
         (1348 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15943-1 (Contig-U15943-1Q) /CSM_Contig/Conti...  1291  0.0
Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Conti...   202  1e-51
Contig-U11841-1 (Contig-U11841-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U15818-1 (Contig-U15818-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U15468-1 (Contig-U15468-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U14952-1 (Contig-U14952-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U12527-1 (Contig-U12527-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U09479-1 (Contig-U09479-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U16439-1 (Contig-U16439-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U15423-1 (Contig-U15423-1Q) /CSM_Contig/Conti...    36  0.14

>Contig-U15943-1 (Contig-U15943-1Q) /CSM_Contig/Contig-U15943-1Q.Seq.d
          Length = 1348

 Score = 1291 bits (651), Expect = 0.0
 Identities = 681/681 (100%)
 Strand = Plus / Plus

                                                                        
Query: 440  caacatcatttggattacaaattgatcatgaaggtattagaattaaaaaggaacaattaa 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440  caacatcatttggattacaaattgatcatgaaggtattagaattaaaaaggaacaattaa 499

                                                                        
Query: 500  aattagannnnnnnnnngatttaagaaaattatttgttggtggtattaattgtgatgata 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500  aattagannnnnnnnnngatttaagaaaattatttgttggtggtattaattgtgatgata 559

                                                                        
Query: 560  ttactgatagtaaaattgttaaagatttaaagaaattggaaaaaattcgtgataaaagaa 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560  ttactgatagtaaaattgttaaagatttaaagaaattggaaaaaattcgtgataaaagaa 619

                                                                        
Query: 620  ttcaatcattattaaaactttttgataaatttggtaaagttcaaaaacgtactattaatt 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620  ttcaatcattattaaaactttttgataaatttggtaaagttcaaaaacgtactattaatt 679

                                                                        
Query: 680  catcaaaaggtttattctttatcacttatgtcgatattgaaagttgtacaaaagcaattc 739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  catcaaaaggtttattctttatcacttatgtcgatattgaaagttgtacaaaagcaattc 739

                                                                        
Query: 740  aattttattcaattaaagaaaatagaaaagcagcaattgacgaaatctcaaaattgctgc 799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  aattttattcaattaaagaaaatagaaaagcagcaattgacgaaatctcaaaattgctgc 799

                                                                        
Query: 800  ttttctattttctttgatttaagaaaattatttgttggtggtattaattgtgatgatatt 859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  ttttctattttctttgatttaagaaaattatttgttggtggtattaattgtgatgatatt 859

                                                                        
Query: 860  actgatagtaaaattgttaaagatttaaagaaattggaaaaaattcgtgataaaagaatt 919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  actgatagtaaaattgttaaagatttaaagaaattggaaaaaattcgtgataaaagaatt 919

                                                                        
Query: 920  caatcattattaaaactttttgataaatttggtaaagttcaaaaacgtactattaattca 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  caatcattattaaaactttttgataaatttggtaaagttcaaaaacgtactattaattca 979

                                                                        
Query: 980  tcaaaaggtttattctttatcacttatgtcgatattgaaagttgtacaaaagcaattcaa 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  tcaaaaggtttattctttatcacttatgtcgatattgaaagttgtacaaaagcaattcaa 1039

                                                                        
Query: 1040 ttttattcaattaaagaaaatagaaaagcagcaattgacgaaatctcaaaattaccaaga 1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 ttttattcaattaaagaaaatagaaaagcagcaattgacgaaatctcaaaattaccaaga 1099

                                 
Query: 1100 aaaatcaccactttataatcc 1120
            |||||||||||||||||||||
Sbjct: 1100 aaaatcaccactttataatcc 1120


 Score =  202 bits (102), Expect = 1e-51
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                       
Query: 65  cttgagcgtgagcgtgaacgtgaacaacgtcgtcttgaaagagagagggatgaaattgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cttgagcgtgagcgtgaacgtgaacaacgtcgtcttgaaagagagagggatgaaattgaa 124

                                                     
Query: 125 cgtgagcaacgtcgtcttgaaaaaattcaacacgaaaaggag 166
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cgtgagcaacgtcgtcttgaaaaaattcaacacgaaaaggag 166


 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                    
Query: 1239 gaacaagatgctgaatttgatgattgggaaattgcaaaat 1278
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 gaacaagatgctgaatttgatgattgggaaattgcaaaat 1278


 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 321 atcaactttaacacatgatcaattaattaaatta 354
           ||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaactttaacacatgatcaattaattaaatta 354


 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 740 aattttattcaattaaagaaaatagaaaagcagcaatt 777
           |||||| || ||| ||||||||||||||||||||||||
Sbjct: 828 aattttcttaaatcaaagaaaatagaaaagcagcaatt 791


 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 791 aattgctgcttttctattttctttgatttaagaaaatt 828
           |||||||||||||||||||||||| ||| || ||||||
Sbjct: 777 aattgctgcttttctattttctttaattgaataaaatt 740


 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 1038 aattttattcaattaaagaaaatagaaaagcagcaatt 1075
            |||||| || ||| ||||||||||||||||||||||||
Sbjct: 828  aattttcttaaatcaaagaaaatagaaaagcagcaatt 791


 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 791  aattgctgcttttctattttctttgatttaagaaaatt 828
            |||||||||||||||||||||||| ||| || ||||||
Sbjct: 1075 aattgctgcttttctattttctttaattgaataaaatt 1038


 Score = 34.2 bits (17), Expect = 0.54
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 237 taaattagaccaatctc 253
           |||||||||||||||||
Sbjct: 237 taaattagaccaatctc 253


>Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Contig-U10985-1Q.Seq.d
          Length = 4897

 Score =  202 bits (102), Expect = 1e-51
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                        
Query: 65   cttgagcgtgagcgtgaacgtgaacaacgtcgtcttgaaagagagagggatgaaattgaa 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4213 cttgagcgtgagcgtgaacgtgaacaacgtcgtcttgaaagagagagggatgaaattgaa 4272

                                                      
Query: 125  cgtgagcaacgtcgtcttgaaaaaattcaacacgaaaaggag 166
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4273 cgtgagcaacgtcgtcttgaaaaaattcaacacgaaaaggag 4314


 Score = 38.2 bits (19), Expect = 0.034
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 81   aacgtgaacaacgtcgtct 99
            |||||||||||||||||||
Sbjct: 4022 aacgtgaacaacgtcgtct 4040


 Score = 36.2 bits (18), Expect = 0.14
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 81   aacgtgaacaacgtcgtcttga 102
            ||||||||||||||||| ||||
Sbjct: 3935 aacgtgaacaacgtcgtattga 3956


 Score = 32.2 bits (16), Expect = 2.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 115  tgaaattgaacgtgag 130
            ||||||||||||||||
Sbjct: 4002 tgaaattgaacgtgag 4017


 Score = 30.2 bits (15), Expect = 8.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 86   gaacaacgtcgtcttgaaa 104
            |||||||||||||| ||||
Sbjct: 4123 gaacaacgtcgtctcgaaa 4141


 Score = 30.2 bits (15), Expect = 8.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 123  aacgtgagcaacgtcgtct 141
            ||||||| |||||||||||
Sbjct: 4022 aacgtgaacaacgtcgtct 4040


 Score = 30.2 bits (15), Expect = 8.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 83   cgtgaacaacgtcgt 97
            |||||||||||||||
Sbjct: 4673 cgtgaacaacgtcgt 4687


>Contig-U11841-1 (Contig-U11841-1Q) /CSM_Contig/Contig-U11841-1Q.Seq.d
          Length = 2210

 Score = 40.1 bits (20), Expect = 0.009
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 478  agaattaaaaaggaacaattaaaa 501
            ||||||||||||||||||| ||||
Sbjct: 1748 agaattaaaaaggaacaatcaaaa 1771


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,758
Number of Sequences: 8402
Number of extensions: 27758
Number of successful extensions: 3426
Number of sequences better than 10.0: 213
length of query: 1348
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1332
effective length of database: 7,941,110
effective search space: 10577558520
effective search space used: 10577558520
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 5
Homology vs DNA 
Query= Contig-U15943-1 (Contig-U15943-1Q) /CSM_Contig/Contig-U15943-1Q.Seq.d
         (1348 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264277) Dictyostelium discoideum vegetative cDNA clone:VS...  1150   0.0    1
(AU266129) Dictyostelium discoideum vegetative cDNA clone:VS...   452   e-146  2
(C22943) Dictyostelium discoideum gamete cDNA, clone FC-AA18.     133   1e-50  3
(C22942) Dictyostelium discoideum gamete cDNA, clone FC-AA18.      86   1e-28  2
(AU053560) Dictyostelium discoideum slug cDNA, clone SLJ113.       96   4e-15  1
(AU053233) Dictyostelium discoideum slug cDNA, clone SLI189.       96   4e-15  1
(AU034917) Dictyostelium discoideum slug cDNA, clone SLE688.       96   4e-15  1
(AU034895) Dictyostelium discoideum slug cDNA, clone SLE655.       96   4e-15  1
(BJ344713) Dictyostelium discoideum cDNA clone:dda20c09, 3' ...    96   4e-15  1
(BJ340927) Dictyostelium discoideum cDNA clone:dda4n09, 3' e...    80   2e-10  1
(AU052710) Dictyostelium discoideum slug cDNA, clone SLD814.       76   4e-09  1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   1e-05  18
(AU039941) Dictyostelium discoideum slug cDNA, clone SLG793.       62   6e-05  1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.010  19
(AL935290) Zebrafish DNA sequence from clone CH211-270H11.         38   0.036  2
(AC184092) Populus trichocarpa clone Pop1-65E20, WORKING DRA...    42   0.047  4
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    38   0.053  10
(EJ718918) 1092959440742 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.062  2
(EK107224) 1092963062852 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.063  2
(ER402395) 1095351027004 Global-Ocean-Sampling_GS-34-01-01-1...    44   0.064  2
(EJ909281) 1093018530429 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.067  2
(EK457117) 1095468533802 Global-Ocean-Sampling_GS-32-01-01-1...    44   0.070  2
(EK395304) 1095469518759 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.071  2
(ER531480) 1093015759504 Global-Ocean-Sampling_GS-35-01-01-1...    44   0.072  2
(ER620804) 1093017406579 Global-Ocean-Sampling_GS-36-01-01-2...    44   0.072  2
(ED820817) MUGQ_CH252P149G11T7_CN165_042 CHORI-252 Vervet Mo...    42   0.074  2
(EJ691686) 1092956005133 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.074  2
(EK101515) 1092963019190 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.075  2
(ER281274) 1091120513151 Global-Ocean-Sampling_GS-34-01-01-1...    44   0.076  2
(EK217859) 1095460124772 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.076  2
(EJ668303) 1092955049350 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.077  2
(EJ858031) 1093017957055 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.078  2
(EJ353762) 1092963614606 Global-Ocean-Sampling_GS-28-01-01-1...    44   0.078  2
(EJ845786) 1093017854218 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.079  2
(ER555944) 1093016321086 Global-Ocean-Sampling_GS-35-01-01-1...    44   0.082  2
(EJ653439) 1092954009267 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.083  2
(ER573516) 1093015803152 Global-Ocean-Sampling_GS-36-01-01-2...    44   0.084  2
(EK149999) 1095456043783 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.086  2
(EJ377112) 1092963746239 Global-Ocean-Sampling_GS-28-01-01-1...    44   0.086  2
(EJ886319) 1093018419549 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.087  2
(EJ852013) 1093017894330 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.093  2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.12   17
(DH236062) Oryzias latipes Fosmid clone:GOLWFno506_k22, reve...    38   0.21   2
(AC148523) Rhinolophus ferrumequinum clone VMRC7-292C3, WORK...    50   0.22   1
(EJ628445) 1092963264028 Global-Ocean-Sampling_GS-29-01-01-1...    42   0.25   2
(EJ644270) 1093012200579 Global-Ocean-Sampling_GS-29-01-01-1...    42   0.28   2
(ER308089) 1092343770052 Global-Ocean-Sampling_GS-34-01-01-1...    42   0.29   2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.32   20
(EJ513925) 1092343577758 Global-Ocean-Sampling_GS-29-01-01-1...    30   0.34   4
(AC103449) Rattus norvegicus clone CH230-133M13, WORKING DRA...    40   0.50   3
(DQ227764) Lactococcus lactis phage jj50, complete genome.         38   0.53   2
(AC006910) Caenorhabditis elegans clone Y92H12, *** SEQUENCI...    36   0.54   9
(AC208714) Zea mays chromosome 7 clone ZMMBBb-80K12; ZMMBBb0...    40   0.57   6
(FJ010786) Lactococcus phage p2 SaV (sav) gene, complete cds...    38   0.60   2
(AC198762) Zea mays chromosome 10 clone CH201-464B20; ZMMBBc...    40   0.75   2
(AM611901) Entamoeba invadens IP1 GSS, clone inv010d11.q1k.        36   0.84   2
(EJ512475) 1095407110160 Global-Ocean-Sampling_GS-28-01-01-1...    44   0.85   2
(BV076882) S212P6835FB1.T0 CZECHII/Ei Mus musculus STS genom...    48   0.86   1
(AL773552) Mouse DNA sequence from clone RP23-103H15 on chro...    48   0.86   1
(CK310461) SB02006A1D09.f1 normalized Keck-Tagu Library SB02...    48   0.86   1
(AM635467) Entamoeba dispar GSS, clone dispar14a10.p1k.            36   0.86   3
(AC208646) Zea mays chromosome 7 clone CH201-287I12; ZMMBBc0...    40   0.88   2
(AM652546) Entamoeba moshkovskii FIC GSS, clone mosh119b02.q1k.    36   0.90   2
(AM604535) Entamoeba invadens IP1 GSS, clone inv040d07.q1k.        36   0.91   2
(EK038076) 1092959485525 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.95   4
(AM616934) Entamoeba invadens IP1 GSS, clone inv086g06.q1k.        36   0.96   2
(AM623096) Entamoeba invadens IP1 GSS, clone inv112e01.q1k.        36   0.98   2
(AM631496) Entamoeba dispar GSS, clone dispar69e10.p1k.            36   0.98   2
(AM636441) Entamoeba dispar GSS, clone dispar37f08.q1k.            36   0.98   2
(AC211800) Populus trichocarpa clone ACSB1173-G13, complete ...    42   1.0    5
(ER522219) 1093015592157 Global-Ocean-Sampling_GS-35-01-01-1...    44   1.1    2
(AC177579) Bos taurus clone CH240-389I10, WORKING DRAFT SEQU...    44   1.1    3
(DV946982) SB03006B2E08.f1 Normalized subtracted Keck-Tagu L...    30   1.2    4
(AM629296) Entamoeba dispar GSS, clone dispar35b05.p1k.            36   1.2    2
(AC217104) Zea mays chromosome 7 clone CH201-222B5; ZMMBBc02...    40   1.2    3
(AC203671) Zea mays chromosome 1 clone CH201-8B5; ZMMBBc0008...    40   1.3    4
(DV957148) SB03038A1B04.f1 Normalized subtracted Keck-Tagu L...    30   1.3    4
(AC205141) Zea mays chromosome 4 clone CH201-216H14; ZMMBBc0...    38   1.3    6
(DR782760) HF-22B22 House Finch spleen SSH cDNA Library Carp...    30   1.4    3
(AC194234) Zea mays chromosome 7 clone CH201-96N4; ZMMBBc009...    40   1.4    3
(BX322577) Zebrafish DNA sequence from clone RP71-52F21 in l...    34   1.8    2
(AM447134) Vitis vinifera, whole genome shotgun sequence, co...    36   1.8    3
(AE017263) Mesoplasma florum L1 complete genome.                   34   1.8    17
(CU207298) Zebrafish DNA sequence from clone CH73-257C13 in ...    34   1.9    2
(AC192235) Zea mays chromosome 3 clone ZMMBBb-415N3; ZMMBBb0...    40   2.0    2
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    38   2.1    9
(FC627219) CAXT5424.rev CAXT Lottia gigantea from mantle Lot...    36   2.3    2
(AC184049) Zea mays chromosome unknown clone ZMMBBb-618B9; Z...    38   2.5    3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         40   2.6    16
(AC209807) Zea mays chromosome 4 clone CH201-303L12; ZMMBBc0...    40   2.8    3
(DH405442) Oryzias latipes Fosmid clone:GOLWFno808_m24, reve...    40   2.8    2
(AC177682) Strongylocentrotus purpuratus clone R3-1017C9, WO...    40   3.0    6
(EJ771972) 1092970302087 Global-Ocean-Sampling_GS-30-02-01-1...    34   3.0    3
(AM670461) Entamoeba terrapinae GSS, clone terra159f09.q1k.        36   3.1    2
(BX537163) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   3.2    4
(AC192551) Gallus gallus BAC clone CH261-144P3 from chromoso...    46   3.4    1
(BK006741) TPA_reasm: Francisella tularensis subsp. holarcti...    46   3.4    1
(DQ681464) Synthetic construct Francisella tularensis clone ...    46   3.4    1
(AC179354) Strongylocentrotus purpuratus clone R3-1102E20, W...    46   3.4    1
(AC171076) Bos taurus clone CH240-228G22, WORKING DRAFT SEQU...    46   3.4    1
(EK412018) 1095505201347 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.4    1
(AV698807) Homo sapiens cDNA clone:GKCBIG05, 5'end, expresse...    46   3.4    1
(DA651409) Homo sapiens cDNA clone MESAN2005384, 5' end, mRN...    46   3.4    1
(CN551203) tad56a07.x1 Hydra EST -Kiel 1 Hydra vulgaris cDNA...    46   3.4    1
(CK722073) tad56a07.y1 Hydra EST -Kiel 1 Hydra vulgaris cDNA...    46   3.4    1
(CJ232532) Mus musculus adult male colon cDNA, RIKEN full-le...    46   3.4    1
(CF917789) Bflor498.001039 Amphioxus 5-6 hrs cDNA library (N...    46   3.4    1
(BW887151) Branchiostoma floridae cDNA, neurula clone:bfne14...    46   3.4    1
(BW865421) Branchiostoma floridae cDNA, neurula clone:bfne07...    46   3.4    1
(BW806948) Branchiostoma floridae cDNA, larva clone:bflv037k...    46   3.4    1
(BW731471) Branchiostoma floridae cDNA, egg clone:bfeg012b19...    46   3.4    1
(BW731113) Branchiostoma floridae cDNA, egg clone:bfeg011b15...    46   3.4    1
(BI378300) BFLG3_002103 Amphioxus 5-6 hrs cDNA library (Name...    46   3.4    1
(BI378200) BFLG3_002003 Amphioxus 5-6 hrs cDNA library (Name...    46   3.4    1
(FE560496) CAXC9374.fwd Amphioxus Branchiostoma floridae unp...    46   3.4    1
(FE557454) CAXC720.fwd Amphioxus Branchiostoma floridae unpu...    46   3.4    1
(CP000915) Francisella tularensis subsp. mediasiatica FSC147...    46   3.4    1
(CP000608) Francisella tularensis subsp. tularensis WY96-341...    46   3.4    1
(CP000437) Francisella tularensis subsp. holarctica OSU18, c...    46   3.4    1
(AM286280) Francisella tularensis subsp. tularensis strain F...    46   3.4    1
(AJ749949) Francisella tularensis subsp. tularensis SCHU S4 ...    46   3.4    1
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    32   3.5    17
(AC209390) Zea mays chromosome 2 clone CH201-308C18; ZMMBBc0...    36   3.6    6
(EK253912) 1095462000674 Global-Ocean-Sampling_GS-31-01-01-1...    44   3.9    2
(EJ631250) 1092963526709 Global-Ocean-Sampling_GS-29-01-01-1...    40   3.9    2
(AM610061) Entamoeba invadens IP1 GSS, clone inv115f04.q1k.        36   4.0    2
(AC197370) Zea mays chromosome 4 clone CH201-159K6; ZMMBBc01...    40   4.2    3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   4.3    20
(AC179380) Strongylocentrotus purpuratus clone R3-59O6, WORK...    36   4.4    7
(EY860517) CM30-C1-401-006-C08-CT.F Sweet lime leaf, infecte...    38   4.4    2
(CT030669) Platynereis dumerilii bac CH305_49A02, WORKING DR...    40   4.5    3
(AC216597) Populus trichocarpa clone POP032-B19, complete se...    36   4.5    5
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    40   4.6    16
(EJ486781) 1095403505942 Global-Ocean-Sampling_GS-28-01-01-1...    40   4.6    2
(AF405554) Cryptosporidium parvum hypothetical protein gene,...    34   4.6    6
(AC213620) Zea mays chromosome 4 clone CH201-476I7; ZMMBBc04...    40   5.0    3
(AC025716) Caenorhabditis elegans cosmid Y39G10AR, complete ...    36   5.3    5
(EV474800) Fc_nor_28C02_M13F Folsomia candida normalized cDN...    34   5.7    2
(CP000162) Drosophila melanogaster genomic scaffold 21100002...    34   6.0    3
(AP010197) Lotus japonicus genomic DNA, chromosome 3, clone:...    36   6.5    6
(AC190493) Zea mays chromosome 4 clone CH201-537F12; ZMMBBc0...    36   7.2    3
(AM461763) Vitis vinifera contig VV78X179759.2, whole genome...    38   7.2    3
(AC174676) Mus musculus chromosome 7 clone RP23-78B16, WORKI...    36   7.4    5
(CR533428) Paramecium tetraurelia macronuclear, PIL-ubiquiti...    34   8.0    2
(AC152834) Pan troglodytes BAC clone CH251-513M11 from chrom...    40   8.2    6
(AC186901) Zea mays chromosome 8 clone CH201-27O19; ZMMBBc00...    36   8.5    4
(EV479777) Fc_nor_76B04_M13F Folsomia candida normalized cDN...    34   8.6    2
(AC202780) Spermophilus tridecemlineatus clone VMRC20-600J21...    36   8.7    5
(ER469167) 1092963942801 Global-Ocean-Sampling_GS-35-01-01-1...    34   8.7    2
(EV476477) Fc_nor_30B05_M13F Folsomia candida normalized cDN...    34   9.1    2
(BB149307) Mus musculus adult female vagina cDNA, RIKEN full...    32   9.2    2
(AC196965) Zea mays chromosome 5 clone ZMMBBb-291P8; ZMMBBb0...    40   9.2    2
(EJ691001) 1092956003408 Global-Ocean-Sampling_GS-30-02-01-1...    32   9.7    3
(EJ722099) 1092959457462 Global-Ocean-Sampling_GS-30-02-01-1...    32   10.0   3

>(AU264277) Dictyostelium discoideum vegetative cDNA clone:VSD589, 3'
            end single read.
          Length = 731

 Score = 1150 bits (580), Expect = 0.0
 Identities = 580/580 (100%)
 Strand = Plus / Plus


Query: 518  atttaagaaaattatttgttggtggtattaattgtgatgatattactgatagtaaaattg 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2    atttaagaaaattatttgttggtggtattaattgtgatgatattactgatagtaaaattg 61


Query: 578  ttaaagatttaaagaaattggaaaaaattcgtgataaaagaattcaatcattattaaaac 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62   ttaaagatttaaagaaattggaaaaaattcgtgataaaagaattcaatcattattaaaac 121


Query: 638  tttttgataaatttggtaaagttcaaaaacgtactattaattcatcaaaaggtttattct 697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  tttttgataaatttggtaaagttcaaaaacgtactattaattcatcaaaaggtttattct 181


Query: 698  ttatcacttatgtcgatattgaaagttgtacaaaagcaattcaattttattcaattaaag 757
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  ttatcacttatgtcgatattgaaagttgtacaaaagcaattcaattttattcaattaaag 241


Query: 758  aaaatagaaaagcagcaattgacgaaatctcaaaattgctgcttttctattttctttgat 817
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  aaaatagaaaagcagcaattgacgaaatctcaaaattgctgcttttctattttctttgat 301


Query: 818  ttaagaaaattatttgttggtggtattaattgtgatgatattactgatagtaaaattgtt 877
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  ttaagaaaattatttgttggtggtattaattgtgatgatattactgatagtaaaattgtt 361


Query: 878  aaagatttaaagaaattggaaaaaattcgtgataaaagaattcaatcattattaaaactt 937
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  aaagatttaaagaaattggaaaaaattcgtgataaaagaattcaatcattattaaaactt 421


Query: 938  tttgataaatttggtaaagttcaaaaacgtactattaattcatcaaaaggtttattcttt 997
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  tttgataaatttggtaaagttcaaaaacgtactattaattcatcaaaaggtttattcttt 481


Query: 998  atcacttatgtcgatattgaaagttgtacaaaagcaattcaattttattcaattaaagaa 1057
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  atcacttatgtcgatattgaaagttgtacaaaagcaattcaattttattcaattaaagaa 541


Query: 1058 aatagaaaagcagcaattgacgaaatctcaaaattaccaa 1097
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  aatagaaaagcagcaattgacgaaatctcaaaattaccaa 581

 Score =  551 bits (278), Expect = e-152
 Identities = 278/278 (100%)
 Strand = Plus / Plus


Query: 815  gatttaagaaaattatttgttggtggtattaattgtgatgatattactgatagtaaaatt 874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gatttaagaaaattatttgttggtggtattaattgtgatgatattactgatagtaaaatt 60


Query: 875  gttaaagatttaaagaaattggaaaaaattcgtgataaaagaattcaatcattattaaaa 934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gttaaagatttaaagaaattggaaaaaattcgtgataaaagaattcaatcattattaaaa 120


Query: 935  ctttttgataaatttggtaaagttcaaaaacgtactattaattcatcaaaaggtttattc 994
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ctttttgataaatttggtaaagttcaaaaacgtactattaattcatcaaaaggtttattc 180


Query: 995  tttatcacttatgtcgatattgaaagttgtacaaaagcaattcaattttattcaattaaa 1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tttatcacttatgtcgatattgaaagttgtacaaaagcaattcaattttattcaattaaa 240


Query: 1055 gaaaatagaaaagcagcaattgacgaaatctcaaaatt 1092
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gaaaatagaaaagcagcaattgacgaaatctcaaaatt 278

 Score =  549 bits (277), Expect = e-152
 Identities = 277/277 (100%)
 Strand = Plus / Plus


Query: 518 atttaagaaaattatttgttggtggtattaattgtgatgatattactgatagtaaaattg 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atttaagaaaattatttgttggtggtattaattgtgatgatattactgatagtaaaattg 359


Query: 578 ttaaagatttaaagaaattggaaaaaattcgtgataaaagaattcaatcattattaaaac 637
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttaaagatttaaagaaattggaaaaaattcgtgataaaagaattcaatcattattaaaac 419


Query: 638 tttttgataaatttggtaaagttcaaaaacgtactattaattcatcaaaaggtttattct 697
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tttttgataaatttggtaaagttcaaaaacgtactattaattcatcaaaaggtttattct 479


Query: 698 ttatcacttatgtcgatattgaaagttgtacaaaagcaattcaattttattcaattaaag 757
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttatcacttatgtcgatattgaaagttgtacaaaagcaattcaattttattcaattaaag 539


Query: 758 aaaatagaaaagcagcaattgacgaaatctcaaaatt 794
           |||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaaatagaaaagcagcaattgacgaaatctcaaaatt 576

 Score = 52.0 bits (26), Expect(2) = 6e-12
 Identities = 35/38 (92%)
 Strand = Plus / Minus


Query: 791 aattgctgcttttctattttctttgatttaagaaaatt 828
           |||||||||||||||||||||||| ||| || ||||||
Sbjct: 261 aattgctgcttttctattttctttaattgaataaaatt 224

 Score = 52.0 bits (26), Expect(2) = 6e-12
 Identities = 35/38 (92%)
 Strand = Plus / Minus


Query: 740 aattttattcaattaaagaaaatagaaaagcagcaatt 777
           |||||| || ||| ||||||||||||||||||||||||
Sbjct: 312 aattttcttaaatcaaagaaaatagaaaagcagcaatt 275

 Score = 52.0 bits (26), Expect(2) = 5e-10
 Identities = 35/38 (92%)
 Strand = Plus / Minus


Query: 1038 aattttattcaattaaagaaaatagaaaagcagcaatt 1075
            |||||| || ||| ||||||||||||||||||||||||
Sbjct: 312  aattttcttaaatcaaagaaaatagaaaagcagcaatt 275

 Score = 52.0 bits (26), Expect(2) = 5e-10
 Identities = 35/38 (92%)
 Strand = Plus / Minus


Query: 791 aattgctgcttttctattttctttgatttaagaaaatt 828
           |||||||||||||||||||||||| ||| || ||||||
Sbjct: 559 aattgctgcttttctattttctttaattgaataaaatt 522

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,163,428,269
Number of extensions: 77650796
Number of successful extensions: 6850454
Number of sequences better than 10.0: 155
Length of query: 1348
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1324
Effective length of database: 96,409,374,237
Effective search space: 127646011489788
Effective search space used: 127646011489788
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U15943-1 (Contig-U15943-1Q) /CSM_Contig/Contig-U15943-1Q.Seq.d
         (1348 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF309947_2(AF309947|pid:none) Dictyostelium discoideum Rac1A (ra...    59   4e-07
EF085052_1(EF085052|pid:none) Picea sitchensis clone WS0286_P07 ...    36   0.023
BT075703_1(BT075703|pid:none) Osmerus mordax clone omor-rgc-503-...    33   0.18
BC071591_1(BC071591|pid:none) Homo sapiens poly(A) binding prote...    33   0.28
AL365277_14(AL365277|pid:none) Human DNA sequence from clone RP1...    33   0.28
(Q13310) RecName: Full=Polyadenylate-binding protein 4;         ...    33   0.28
CP000993_515(CP000993|pid:none) Borrelia recurrentis A1, complet...    39   0.33
CP000976_526(CP000976|pid:none) Borrelia duttonii Ly, complete g...    39   0.33
AL844505_190(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.43
BC003283_1(BC003283|pid:none) Mus musculus poly(A) binding prote...    32   0.47
AL606917_1(AL606917|pid:none) Mouse DNA sequence from clone RP23...    32   0.47
AL606917_2(AL606917|pid:none) Mouse DNA sequence from clone RP23...    32   0.47
AL606917_4(AL606917|pid:none) Mouse DNA sequence from clone RP23...    32   0.47
AM910996_366(AM910996|pid:none) Plasmodium knowlesi strain H chr...    39   0.56
AP009049_1363(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    36   0.77
EF587370_1(EF587370|pid:none) Oedogonium cardiacum strain SAG 57...    38   0.96
AK135962_1(AK135962|pid:none) Mus musculus in vitro fertilized e...    32   1.3
CP000049_199(CP000049|pid:none) Borrelia turicatae 91E135, compl...    37   1.6
(P50090) RecName: Full=Kelch repeat-containing protein 2;  &AY69...    37   2.1
GN109511_1(GN109511|pid:none) Sequence 14292 from Patent WO20090...    36   2.8
CP000993_195(CP000993|pid:none) Borrelia recurrentis A1, complet...    36   3.6
CP000806_3934(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    35   4.8
L29324_7(L29324|pid:none) Streptococcus pneumoniae integrase, ex...    35   6.2
AC117076_31(AC117076|pid:none) Dictyostelium discoideum chromoso...    35   8.1
(Q550L8) RecName: Full=Probable serine/threonine-protein kinase ...    35   8.1
(Q558U1) RecName: Full=Probable serine/threonine-protein kinase ...    35   8.1

>AF309947_2(AF309947|pid:none) Dictyostelium discoideum Rac1A
           (rac1A) gene, complete cds; and unknown gene.
          Length = 202

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/89 (37%), Positives = 50/89 (56%)
 Frame = +1

Query: 520 LRKLFVGGINCDDITDSKIVKDLKKLEKIRDKRIQSLLKLFDKFGKVQKRTINSSKGLFF 699
           ++KLF+GGIN DD         LK  E+++  RIQ L+ LF  FG V K + +  KG FF
Sbjct: 86  IKKLFIGGINFDD---------LKGNEQLKQIRIQKLIHLFQSFGSVLKTSYHWDKGYFF 136

Query: 700 ITYVDIESCTKAIQFYSIKENRKAAIDEI 786
           I+Y + +     +  +S  + R+  ID+I
Sbjct: 137 ISYSNNKVSQTVVDSFSTTKKRQKYIDKI 165

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/89 (37%), Positives = 50/89 (56%)
 Frame = +2

Query: 818  LRKLFVGGINCDDITDSKIVKDLKKLEKIRDKRIQSLLKLFDKFGKVQKRTINSSKGLFF 997
            ++KLF+GGIN DD         LK  E+++  RIQ L+ LF  FG V K + +  KG FF
Sbjct: 86   IKKLFIGGINFDD---------LKGNEQLKQIRIQKLIHLFQSFGSVLKTSYHWDKGYFF 136

Query: 998  ITYVDIESCTKAIQFYSIKENRKAAIDEI 1084
            I+Y + +     +  +S  + R+  ID+I
Sbjct: 137  ISYSNNKVSQTVVDSFSTTKKRQKYIDKI 165

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,057,769,282
Number of extensions: 15820496
Number of successful extensions: 55458
Number of sequences better than 10.0: 26
Number of HSP's gapped: 55380
Number of HSP's successfully gapped: 39
Length of query: 449
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 317
Effective length of database: 623,955,076
Effective search space: 197793759092
Effective search space used: 197793759092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.40  gvh: 0.26  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for Contig-U15943-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0