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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15940-1
Contig ID Contig-U15940-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15940-1 (Contig-U15940-1Q) /CSM_Contig/Contig-U15940-1Q.Seq.d
TTGGCCTACTGGAAAAAAAAATTTTTATTATTATTATTTACATATAATAT
ATGAAAAAGCATCAATCATTTATTCAATAGTATAAAGAACAATCTTAAAA
AGAAAAGAAAAAATAAATAAATAAAAAAAAAAAAAANTAAAATAAAATAA
AATAAAATAAAATAAAAAATAAATAAAAAATAATTTAAAAATAAATAAAA
AAAATAANTAAAAAANTAANTAANTAAAAAAATAAAAAATAANTAAAANT
TTNTAATAANNAATAATNTTAATCNGTANAAANAAAA----------ATT
TCAATCATTCCCATCGAATCCAAAAATTTCAAAAGCAATATTAGAACAAT
GTAATATCATTAATAATAATAGCAATAGCAATAATAGCAATAATAAGGAC
CCAGTAATACTTTGTAAATATACAATAGAATCACAACCAAAGAGTAATAT
ATCGGTTTTAAAACCAACTTTGGTTGAATTTATAAATCAACCCGATAGTA
AAGATGATGAATCATCAGTAAAATCACCACCATTACCAGTGGAGTCACAA
CCAATATTCAATTCAAAACAAAGTGCAACAATGGATGGAATTACCACTCA
TAAATCAGTATCGATTACGATTTCCACATCGACATCACCATCTTCAACAA
CCACAACCACATCAACTACCACTTCAATTATAGCAGAAGAACCATCGAGT
CCAATATTACCAACTGCATCACCATCCTCCTCTTCTTCATCGATAATTAC
AACCGCAACTGCTTCAACAATACCAATGTCACCTTCATTACCATCAATAC
CATTTCATGAGTTTGAAACAATGGAATCCTCTACCACAACAACTTTATTA
TCAGAAAATAATGGTGGTGGTGGAGGCAGTAGTTGTAATGATAATAGTAG
AAGAAATAGTTTGAATATCTTACCATTAAGATTAAAATCATTCTCATTTT
CTGCTCCACAATCTGATTCAATGATTGAACAACCAGAAGATGATCCATTT
TTTGATTTTGAAGATTTATCAGATGATGATGATAGTAATGATAATGATGA
TGAAGAATTAAAAGAAATAAATGGTGAAAAAATAATACAACAAAATGATC
TCACTCCAACTACTACAATAACCTCAAATACAGATACAGACTTTGACGCC
AATACAAATATAAATTCAAACATAAACTCAAATATAAATTCAAATATAAA
TATAAATAATAGCGGAAACAATAATAAAAACAGTAATAATATAGAAATTA
CTGAAAATATTGATAATAAAGCGAAAATAATCAATAAACATATAAAAACT
ATAACAAATTCAAAACCAATACCAATACCAATACCAACACCAACACCAAT
AAGTATAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAA
AAGAAAAAGAAAAAGAAAAAGAAAAAGAAATGAAATCAACAATTAATTTA
CGTTCAGAGGATACAACATCAAATAAATCAACTATAGTTTTTACAGAATG
TTTAGAATATAAAGGTCATCAATGGAGACCAAATATATGTGTAACATGTT
TTTCACCAAAGAATAAACATAAAAATGTTTTACCAGAAACTAGTACACCA
TTGATTTCACAATCATCCCAAACATCAACTATAACACCATCATCCTCTTC
AACCTCTACATCTACTTCATCAATTTCTACACATAAAACTGCAAATAATA
AAACTGTAATCACTTATATCTCTTCAACAACTACAACTACAACAACTTCA
TCATCATCATCATCACCACCATCTTCATCAATTGCTGGTATCACAAATCC
AACCTCAAGATCATCTTCACCAATACTAAAATCAGTACCACCCTCAGCTT
ATTCAAATGTTGTTATTCCAATTAATAATATCAATAATAGTAATAGCAAT
AGCAGTAGTGGTGGTGGTAATAATAATAATAAATCAATTTCAACACCATC
ATCACCAATTATATCAAGACCAATAACAAATAAAATTAATAATAATAATA
ATAATAATCAACCGGCAATTACATTATAATCAACCACAAAGTTCAAGTGT
TTCANCAACATCATCACCAATAATTAGA
Gap gap included
Contig length 2068
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 21
Number of EST 32
Link to clone list U15940
List of clone(s) 

est1=SHA269F,1,287
est2=SHJ584F,5,287
est3=CHR812F,17,287
est4=AHA382Z,288,802
est5=SFB380E,288,1306
est6=AHA825Z,362,820
est7=CHD248F,382,963
est8=AHG576Z,408,966
est9=SFF810F,421,1078
est10=CFH345F,483,1111
est11=CHR812Z,535,1082
est12=SLH565F,541,1230
est13=SSI276E,856,1852
est14=AHG576F,967,1489
est15=CHS269F,986,1508
est16=SLG110F,1037,1553
est17=SHA269Z,1094,1653
est18=CFH345Z,1098,1726
est19=CHS269Z,1099,1854
est20=SHL511Z,1124,1671
est21=SHJ584Z,1133,1679
est22=CHI311Z,1157,1827
est23=CHD248Z,1165,1830
est24=CHR894Z,1165,1689
est25=SFF810Z,1170,1868
est26=SHB477Z,1179,1732
est27=SHB477F,1194,1796
est28=CHO753Z,1207,1681
est29=SLH565Z,1297,1864
est30=VSB157Z,1377,1923
est31=CHI311F,1451,2007
est32=SFE156Z,1814,2068
Translated Amino Acid sequence 
laywkkkfllllftyni*ksinhlfnsiknnlkkkrknk*ikkkkxkik*nkik*kinkk
*fknk*kk*xkx*xxkkiknx*XFXIXNNXNXXKX---

---FQSFPSNPKISKAILEQCNIINNNSNSNNSNNKDPVILCKYTIESQPKSNISVLKPT
LVEFINQPDSKDDESSVKSPPLPVESQPIFNSKQSATMDGITTHKSVSITISTSTSPSST
TTTTSTTTSIIAEEPSSPILPTASPSSSSSSIITTATASTIPMSPSLPSIPFHEFETMES
STTTTLLSENNGGGGGSSCNDNSRRNSLNILPLRLKSFSFSAPQSDSMIEQPEDDPFFDF
EDLSDDDDSNDNDDEELKEINGEKIIQQNDLTPTTTITSNTDTDFDANTNINSNINSNIN
SNININNSGNNNKNSNNIEITENIDNKAKIINKHIKTITNSKPIPIPIPTPTPISIKEKE
KEKEKEKEKEKEKEKEKEKEMKSTINLRSEDTTSNKSTIVFTECLEYKGHQWRPNICVTC
FSPKNKHKNVLPETSTPLISQSSQTSTITPSSSSTSTSTSSISTHKTANNKTVITYISST
TTTTTTSSSSSSPPSSSIAGITNPTSRSSSPILKSVPPSAYSNVVIPINNINNSNSNSSS
GGGNNNNKSISTPSSPIISRPITNKINNNNNNNQPAITL*sttkfkcfxniitnn*
Translated Amino Acid sequence (All Frames) 
Frame A:
laywkkkfllllftyni*ksinhlfnsiknnlkkkrknk*ikkkkxkik*nkik*kinkk
*fknk*kk*xkx*xxkkiknx*XFXIXNNXNXXKX---

---isiipiesknfksnirtm*yh****q*q**q**gpsntl*iynrittke*yigfktn
fg*iykstr**r**iiskittitsgvttniqfktkcnngwnyhs*isidydfhiditifn
nhnhinyhfnysrrtiesnitncitillffidnynrncfnntnvtfitintis*v*nngi
lyhnnfiirk*wwwwrq*l*****kk*feyltikikiilifcsti*fnd*ttrr*sif*f
*rfir**********rikrnkw*knnttk*shsnyynnlkyryrl*rqykykfkhklkyk
fkykyk**rkq**kq**yrny*ky***sennq*tyknynkfktntntntntntnkykrkr
krkrkrkrkrkrkrkrkrkrneinn*ftfrgynik*inysfyrmfri*rssmetkymcnm
fftke*t*kcftrn*ytidftiipninyntiilfnlyiyfinfyt*nck**ncnhlylfn
nynynnfiiiiittifincwyhksnlkiiftntkisttlslfkccysn**yq****q*q*
www*****infntiitnyiktnnk*n*******stgnyiiinhkvqvfxqhhhq*l

Frame B:
wptgkknfyyyylhiiyekasiiysiv*rtilkrkekink*kkkkxk*nkik*nkk*ikn
nlkinkknx*kxx*xkk*kixkxx**xixlixxxk---

---FQSFPSNPKISKAILEQCNIINNNSNSNNSNNKDPVILCKYTIESQPKSNISVLKPT
LVEFINQPDSKDDESSVKSPPLPVESQPIFNSKQSATMDGITTHKSVSITISTSTSPSST
TTTTSTTTSIIAEEPSSPILPTASPSSSSSSIITTATASTIPMSPSLPSIPFHEFETMES
STTTTLLSENNGGGGGSSCNDNSRRNSLNILPLRLKSFSFSAPQSDSMIEQPEDDPFFDF
EDLSDDDDSNDNDDEELKEINGEKIIQQNDLTPTTTITSNTDTDFDANTNINSNINSNIN
SNININNSGNNNKNSNNIEITENIDNKAKIINKHIKTITNSKPIPIPIPTPTPISIKEKE
KEKEKEKEKEKEKEKEKEKEMKSTINLRSEDTTSNKSTIVFTECLEYKGHQWRPNICVTC
FSPKNKHKNVLPETSTPLISQSSQTSTITPSSSSTSTSTSSISTHKTANNKTVITYISST
TTTTTTSSSSSSPPSSSIAGITNPTSRSSSPILKSVPPSAYSNVVIPINNINNSNSNSSS
GGGNNNNKSISTPSSPIISRPITNKINNNNNNNQPAITL*sttkfkcfxniitnn*

Frame C:
gllekkifiiiiyi*ymkkhqsfiq*ykeqs*kekkk*inkkkkx*nkik*nkiknk*ki
i*k*ikkixkkxxx*knkk*xkxxnxx*x*svxxk---

---fnhshriqkfqkqy*nnvisliiiaiaiiaiirtq*yfvniq*nhnqrviyrf*nql
wlnl*inpivkmmnhq*nhhhyqwshnqysiqnkvqqwmelplinqyrlrfphrhhhlqq
pqphqlplql*qknhrvqyyqlhhhppllhr*lqpqllqqyqchlhyhqyhfmslkqwnp
lpqqlyyqkimvvveavvvmiiveeiv*isyh*d*nhshfllhnliq*lnnqkmihflil
kiyqmmmivmimmmkn*kk*mvkk*ynkmislqllq*pqiqiqtltpiqi*iqt*tqi*i
qi*i*iiaetiiktvii*kllkiliikrk*sini*kl*qiqnqyqyqyqhqhq*v*kkkk
kkkkkkkkkkkkkkkkkkkk*nqqliyvqriqhqinql*flqnv*nikvingdqiyv*hv
fhqrinikmfyqklvhh*fhnhpkhql*hhhplqplhllhqflhiklqiikl*slislqq
lqlqqlhhhhhhhhlhqllvsqiqpqdhlhqy*nqyhpqliqmllfqliisiiviaiavv
vvviiiinqfqhhhhqlyqdq*qikliiiiiiinrqlhynqpqsssvsxtsspiir
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15940-1 (Contig-U15940-1Q)
/CSM_Contig/Contig-U15940-1Q.Seq.d
         (2078 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15940-1 (Contig-U15940-1Q) /CSM_Contig/Conti...  1237  0.0
Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Conti...    58  6e-08
Contig-U16300-1 (Contig-U16300-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U14772-1 (Contig-U14772-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U13529-1 (Contig-U13529-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Conti...    48  6e-05
Contig-U16061-1 (Contig-U16061-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U15373-1 (Contig-U15373-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U14315-1 (Contig-U14315-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U13187-1 (Contig-U13187-1Q) /CSM_Contig/Conti...    46  2e-04

>Contig-U15940-1 (Contig-U15940-1Q) /CSM_Contig/Contig-U15940-1Q.Seq.d
          Length = 2078

 Score = 1237 bits (624), Expect = 0.0
 Identities = 624/624 (100%)
 Strand = Plus / Plus

                                                                        
Query: 397  ggacccagtaatactttgtaaatatacaatagaatcacaaccaaagagtaatatatcggt 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397  ggacccagtaatactttgtaaatatacaatagaatcacaaccaaagagtaatatatcggt 456

                                                                        
Query: 457  tttaaaaccaactttggttgaatttataaatcaacccgatagtaaagatgatgaatcatc 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457  tttaaaaccaactttggttgaatttataaatcaacccgatagtaaagatgatgaatcatc 516

                                                                        
Query: 517  agtaaaatcaccaccattaccagtggagtcacaaccaatattcaattcaaaacaaagtgc 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517  agtaaaatcaccaccattaccagtggagtcacaaccaatattcaattcaaaacaaagtgc 576

                                                                        
Query: 577  aacaatggatggaattaccactcataaatcagtatcgattacgatttccacatcgacatc 636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  aacaatggatggaattaccactcataaatcagtatcgattacgatttccacatcgacatc 636

                                                                        
Query: 637  accatcttcaacaaccacaaccacatcaactaccacttcaattatagcagaagaaccatc 696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637  accatcttcaacaaccacaaccacatcaactaccacttcaattatagcagaagaaccatc 696

                                                                        
Query: 697  gagtccaatattaccaactgcatcaccatcctcctcttcttcatcgataattacaaccgc 756
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  gagtccaatattaccaactgcatcaccatcctcctcttcttcatcgataattacaaccgc 756

                                                                        
Query: 757  aactgcttcaacaataccaatgtcaccttcattaccatcaataccatttcatgagtttga 816
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  aactgcttcaacaataccaatgtcaccttcattaccatcaataccatttcatgagtttga 816

                                                                        
Query: 817  aacaatggaatcctctaccacaacaactttattatcagaaaataatggtggtggtggagg 876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  aacaatggaatcctctaccacaacaactttattatcagaaaataatggtggtggtggagg 876

                                                                        
Query: 877  cagtagttgtaatgataatagtagaagaaatagtttgaatatcttaccattaagattaaa 936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  cagtagttgtaatgataatagtagaagaaatagtttgaatatcttaccattaagattaaa 936

                                                                        
Query: 937  atcattctcattttctgctccacaatctgattcaatgattgaacaaccagaagatgatcc 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  atcattctcattttctgctccacaatctgattcaatgattgaacaaccagaagatgatcc 996

                                    
Query: 997  attttttgattttgaagatttatc 1020
            ||||||||||||||||||||||||
Sbjct: 997  attttttgattttgaagatttatc 1020


 Score =  628 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1431 tgaaatcaacaattaatttacgttcagaggatacaacatcaaataaatcaactatagttt 1490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 tgaaatcaacaattaatttacgttcagaggatacaacatcaaataaatcaactatagttt 1490

                                                                        
Query: 1491 ttacagaatgtttagaatataaaggtcatcaatggagaccaaatatatgtgtaacatgtt 1550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 ttacagaatgtttagaatataaaggtcatcaatggagaccaaatatatgtgtaacatgtt 1550

                                                                        
Query: 1551 tttcaccaaagaataaacataaaaatgttttaccagaaactagtacaccattgatttcac 1610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 tttcaccaaagaataaacataaaaatgttttaccagaaactagtacaccattgatttcac 1610

                                                                        
Query: 1611 aatcatcccaaacatcaactataacaccatcatcctcttcaacctctacatctacttcat 1670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 aatcatcccaaacatcaactataacaccatcatcctcttcaacctctacatctacttcat 1670

                                                                        
Query: 1671 caatttctacacataaaactgcaaataataaaactgtaatcacttatatctcttcaacaa 1730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 caatttctacacataaaactgcaaataataaaactgtaatcacttatatctcttcaacaa 1730

                             
Query: 1731 ctacaactacaacaact 1747
            |||||||||||||||||
Sbjct: 1731 ctacaactacaacaact 1747


 Score =  188 bits (95), Expect = 2e-47
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1781 attgctggtatcacaaatccaacctcaagatcatcttcaccaatactaaaatcagtacca 1840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 attgctggtatcacaaatccaacctcaagatcatcttcaccaatactaaaatcagtacca 1840

                                               
Query: 1841 ccctcagcttattcaaatgttgttattccaattaa 1875
            |||||||||||||||||||||||||||||||||||
Sbjct: 1841 ccctcagcttattcaaatgttgttattccaattaa 1875


 Score =  188 bits (95), Expect = 2e-47
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1054 agaattaaaagaaataaatggtgaaaaaataatacaacaaaatgatctcactccaactac 1113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 agaattaaaagaaataaatggtgaaaaaataatacaacaaaatgatctcactccaactac 1113

                                               
Query: 1114 tacaataacctcaaatacagatacagactttgacg 1148
            |||||||||||||||||||||||||||||||||||
Sbjct: 1114 tacaataacctcaaatacagatacagactttgacg 1148


 Score =  149 bits (75), Expect = 2e-35
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 22 tttttattattattatttacatataatatatgaaaaagcatcaatcatttattcaatagt 81
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 tttttattattattatttacatataatatatgaaaaagcatcaatcatttattcaatagt 81

                         
Query: 82 ataaagaacaatctt 96
          |||||||||||||||
Sbjct: 82 ataaagaacaatctt 96


 Score =  133 bits (67), Expect = 1e-30
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2009 caaccggcaattacattataatcaaccacaaagttcaagtgtttcancaacatcatcacc 2068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 caaccggcaattacattataatcaaccacaaagttcaagtgtttcancaacatcatcacc 2068

                      
Query: 2069 aataattaga 2078
            ||||||||||
Sbjct: 2069 aataattaga 2078


 Score =  115 bits (58), Expect = 3e-25
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1299 ctataacaaattcaaaaccaataccaataccaataccaacaccaacaccaataagtat 1356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 ctataacaaattcaaaaccaataccaataccaataccaacaccaacaccaataagtat 1356


 Score =  107 bits (54), Expect = 7e-23
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 298 atttcaatcattcccatcgaatccaaaaatttcaaaagcaatattagaacaatg 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atttcaatcattcccatcgaatccaaaaatttcaaaagcaatattagaacaatg 351


 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                             
Query: 1939 ttcaacaccatcatcaccaattatatcaagacc 1971
            |||||||||||||||||||||||||||||||||
Sbjct: 1939 ttcaacaccatcatcaccaattatatcaagacc 1971


>Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Contig-U14123-1Q.Seq.d
          Length = 620

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 1315 accaataccaataccaataccaacaccaacaccaata 1351
            ||||||||||||||||||||||| ||||| |||||||
Sbjct: 56   accaataccaataccaataccaataccaataccaata 92


 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 1315 accaataccaataccaataccaacaccaacaccaata 1351
            ||||||||||||||||||||||| ||||| |||||||
Sbjct: 50   accaataccaataccaataccaataccaataccaata 86


 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 1315 accaataccaataccaataccaacaccaacaccaata 1351
            ||||||||||||||||||||||| ||||| |||||||
Sbjct: 44   accaataccaataccaataccaataccaataccaata 80


 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 1315 accaataccaataccaataccaacaccaacaccaata 1351
            ||||||||||||||||||||||| ||||| |||||||
Sbjct: 38   accaataccaataccaataccaataccaataccaata 74


 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 1315 accaataccaataccaataccaacaccaacaccaata 1351
            ||||||||||||||||||||||| ||||| |||||||
Sbjct: 32   accaataccaataccaataccaataccaataccaata 68


 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 1316 ccaataccaataccaataccaacaccaacaccaata 1351
            |||||||||||||||||||||| ||||| |||||||
Sbjct: 27   ccaataccaataccaataccaataccaataccaata 62


 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 1316 ccaataccaataccaataccaacaccaacaccaata 1351
            ||||| |||||||||||||||| ||||| |||||||
Sbjct: 21   ccaatnccaataccaataccaataccaataccaata 56


>Contig-U16300-1 (Contig-U16300-1Q) /CSM_Contig/Contig-U16300-1Q.Seq.d
          Length = 1434

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 1305 caaattcaaaaccaataccaataccaataccaa 1337
            |||| |||||| |||||||||||||||||||||
Sbjct: 1206 caaaatcaaaatcaataccaataccaataccaa 1238


 Score = 36.2 bits (18), Expect = 0.21
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                              
Query: 1310 tcaaaaccaataccaataccaataccaacaccaa 1343
            |||||| ||| | ||||||||||||||| |||||
Sbjct: 1205 tcaaaatcaaaatcaataccaataccaataccaa 1238


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,715
Number of Sequences: 8402
Number of extensions: 62715
Number of successful extensions: 18687
Number of sequences better than 10.0: 1207
length of query: 2078
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2061
effective length of database: 7,932,708
effective search space: 16349311188
effective search space used: 16349311188
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 3. 3
Homology vs DNA 
Query= Contig-U15940-1 (Contig-U15940-1Q) /CSM_Contig/Contig-U15940-1Q.Seq.d
         (2078 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ363775) Dictyostelium discoideum cDNA clone:ddc28o12, 5' ...  1080   0.0    1
(BJ359563) Dictyostelium discoideum cDNA clone:ddc15j11, 5' ...   930   0.0    3
(BJ387643) Dictyostelium discoideum cDNA clone:dds3p19, 5' e...   894   0.0    2
(AU062097) Dictyostelium discoideum slug cDNA, clone SLH565.      868   0.0    3
(BJ386081) Dictyostelium discoideum cDNA clone:ddc57h04, 3' ...   874   0.0    1
(BJ366181) Dictyostelium discoideum cDNA clone:ddc38f03, 5' ...   573   0.0    3
(BJ392227) Dictyostelium discoideum cDNA clone:dds26j20, 5' ...   628   e-179  2
(BJ399071) Dictyostelium discoideum cDNA clone:dds3p19, 3' e...   287   e-104  4
(AU073752) Dictyostelium discoideum slug cDNA, clone SSI276.      232   4e-56  1
(BJ400308) Dictyostelium discoideum cDNA clone:dds9o13, 3' e...   133   8e-52  3
(BJ334014) Dictyostelium discoideum cDNA clone:dda44g19, 5' ...   137   2e-37  2
(BJ396756) Dictyostelium discoideum cDNA clone:dds43g21, 5' ...   147   2e-30  1
(BJ391621) Dictyostelium discoideum cDNA clone:dds24i18, 5' ...   147   2e-30  1
(BJ371209) Dictyostelium discoideum cDNA clone:ddc57h04, 5' ...   147   2e-30  1
(BJ371575) Dictyostelium discoideum cDNA clone:ddc58i18, 5' ...    60   9e-28  4
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    46   1e-05  3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    42   2e-04  6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    44   4e-04  7
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    42   6e-04  6
(BJ403277) Dictyostelium discoideum cDNA clone:dds24i18, 3' ...    50   6e-04  2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    40   0.001  6
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    46   0.004  5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   0.005  8
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    46   0.015  6
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    44   0.016  6
(AJ314911) Dictyostelium discoideum DrnA gene for putative R...    40   0.017  3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   0.018  6
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    44   0.028  5
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    40   0.029  7
(AC112008) Rattus norvegicus clone CH230-236B13, WORKING DRA...    38   0.052  2
(AC128977) Rattus norvegicus clone CH230-206D19, *** SEQUENC...    38   0.053  2
(DY893266) CeleSEQ12556 Cunninghamella elegans pBluescript (...    40   0.058  3
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862...    34   0.074  7
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    38   0.081  6
(CR376825) Zebrafish DNA sequence from clone CH211-136O20 in...    52   0.086  1
(FE325378) CANX958.rev CANX_Daphnia_pulex_Log50_Library_8 Da...    44   0.11   2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    36   0.18   6
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    40   0.23   6
(DC618774) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    40   0.29   3
(BX908755) Zebrafish DNA sequence from clone DKEY-67F11 in l...    50   0.34   1
(BX469922) Zebrafish DNA sequence from clone DKEY-30N5 in li...    50   0.34   1
(AM475687) Vitis vinifera contig VV78X104031.7, whole genome...    50   0.34   1
(AC178827) Strongylocentrotus purpuratus clone R3-29G18, WOR...    50   0.34   1
(AC178258) Strongylocentrotus purpuratus clone R3-3086O16, W...    50   0.34   1
(AC178255) Strongylocentrotus purpuratus clone R3-3086O12, W...    50   0.34   1
(EK278616) 1095462286460 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.34   1
(DY284516) IC0AAA61CD06RM1 CitNFL Citrus clementina cDNA 5',...    50   0.34   1
(DY278808) IC0AAA47CF05RM1 CitNFL Citrus clementina cDNA 5',...    50   0.34   1
(DN617613) UCRCS11_01H05_f Parent Washington Navel Orange Sc...    50   0.34   1
(CX053230) UCRCS09_4G08_g Ruby Orange Developing Seed cDNA L...    50   0.34   1
(CK739739) USDA-FP_6128 Ridge pineapple sweet orange entire ...    50   0.34   1
(CF835889) UCRCS03_02B02_r Washington Navel Orange Shoot Mer...    50   0.34   1
(EY835299) PT11-C2-301-012-H01-CT.F Poncirus trifoliata bark...    50   0.34   1
(EY702071) CS00-C3-700-110-G01-CT.F Sweet orange fruit, deve...    50   0.34   1
(EY650214) CS00-C1-100-008-E08-CT.F Sweet orange leaf, green...    50   0.34   1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    40   0.34   6
(AF104350) Dictyostelium discoideum prespore-specific protei...    42   0.34   4
(EY331562) CAWY4258.fwd CAWY Helobdella robusta Subtracted E...    40   0.54   3
(AF024654) Dictyostelium discoideum hybrid histidine kinase ...    36   0.59   4
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    46   0.59   8
(BJ386550) Dictyostelium discoideum cDNA clone:ddc58i18, 3' ...    40   0.59   2
(CD198770) MS1-0106U-D287-C04-U.B MS1-0106 Schistosoma manso...    42   0.60   3
(AC117082) Dictyostelium discoideum chromosome 2 map complem...    40   0.62   4
(BJ429185) Dictyostelium discoideum cDNA clone:ddv2k16, 3' e...    36   0.64   2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    44   0.71   6
(BF015232) kq61a11.y1 TBN95TM-SSR Strongyloides stercoralis ...    42   0.78   3
(BF015380) kq63g01.y1 TBN95TM-SSR Strongyloides stercoralis ...    42   0.79   3
(BF015201) kq65f05.y1 TBN95TM-SSR Strongyloides stercoralis ...    42   0.84   3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   0.85   7
(BE579571) kq29h03.y1 TBN95TM-SSR Strongyloides stercoralis ...    42   0.90   3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    36   0.92   5
(FM196689) Triticum aestivum GSS, clone HC-11_F03_A_027.ab1.       42   1.1    2
(BJ336822) Dictyostelium discoideum cDNA clone:dda55c07, 5' ...    38   1.1    3
(AC099290) Rattus norvegicus clone CH230-75D5, WORKING DRAFT...    38   1.2    5
(FH033825) CHO_OF3264xj24f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.2    2
(CR382336) Zebrafish DNA sequence from clone CH211-125A6 in ...    40   1.3    4
(CU570987) Zebrafish DNA sequence from clone CH73-40A2 in li...    48   1.3    1
(CU041376) Zebrafish DNA sequence from clone CH73-78I5 in li...    48   1.3    1
(BX571724) Zebrafish DNA sequence from clone CH211-165B19 in...    48   1.3    1
(DQ415920) Cleome spinosa clone BAC Cs3, complete sequence.        48   1.3    1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    48   1.3    1
(AC084762) Oryza sativa chromosome 3 BAC OSJNBa0013O08 genom...    48   1.3    1
(EA687709) Sequence 66588 from patent US 7365185.                  48   1.3    1
(EA687703) Sequence 66582 from patent US 7365185.                  48   1.3    1
(AC157855) Atelerix albiventris clone LB4-466A5, WORKING DRA...    48   1.3    1
(AC157854) Atelerix albiventris clone LB4-40M10, WORKING DRA...    48   1.3    1
(AC139727) Danio rerio strain Tue clone CH211-87H3, WORKING ...    48   1.3    1
(AC138153) Danio rerio strain Tue clone CH211-228N13, WORKIN...    48   1.3    1
(AC133338) Oryza sativa Japonica Group chromosome 3 clone OS...    48   1.3    1
(CU104791) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.3    1
(AC175776) Bos taurus clone CH240-525E20, WORKING DRAFT SEQU...    48   1.3    1
(AC163256) Loxodonta africana clone VMRC15-498C1, WORKING DR...    48   1.3    1
(FH703656) CHO_OF5166xe14r1.ab1 CHO_OF5 Nicotiana tabacum ge...    48   1.3    1
(FH703578) CHO_OF5166xe14f1.ab1 CHO_OF5 Nicotiana tabacum ge...    48   1.3    1
(FH460595) CHO_OF4932xp04r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   1.3    1
(FH393569) CHO_OF4797xj12f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   1.3    1
(FH371833) CHO_OF4522xi10r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   1.3    1
(FH354067) CHO_OF4275xm21r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   1.3    1
(ET974099) CHO_OF664xj23r1.ab1 CHO_OF Nicotiana tabacum geno...    48   1.3    1
(AG843786) Oryza sativa Indica Group genomic DNA, BAC end se...    48   1.3    1
(DT592410) aam01-49ms1-b12 Aam01 Acorus americanus cDNA clon...    48   1.3    1
(CU528317) Theobroma cacao, mRNA sequence (KZ0ACAA5YO15FM1).       48   1.3    1
(BJ397099) Dictyostelium discoideum cDNA clone:dds45e06, 5' ...    48   1.3    1
(BJ392616) Dictyostelium discoideum cDNA clone:dds28f12, 5' ...    48   1.3    1
(BJ333964) Dictyostelium discoideum cDNA clone:dda44k18, 5' ...    48   1.3    1
(EY298902) CAWX14166.fwd CAWX Helobdella robusta Primary Ear...    48   1.3    1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   1.4    6
(DN306853) PL05012A2G04 cDNA from sexually mature hermaphodi...    32   1.4    4
(AF362368) Dictyostelium discoideum histidine kinase DhkF (d...    36   1.8    3
(EG757865) EST_ssal_sjb_6484 ssalsjb mixed_tissue Salmo sala...    38   1.9    2
(M38703) Dictyostelium discoideum protein kinase (GPK2) gene...    42   1.9    2
(FH103504) CHO_OF3112xl03f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   2.1    2
(AL929266) Zebrafish DNA sequence from clone CH211-67E16 in ...    36   2.1    10
(EY299336) CAWX14410.fwd CAWX Helobdella robusta Primary Ear...    46   2.2    2
(EY343360) CAWZ12448.fwd CAWZ Helobdella robusta Primary Lat...    46   2.3    2
(AC137590) Homo sapiens 12 BAC RP13-820C6 (Roswell Park Canc...    46   2.3    3
(BX914197) Zebrafish DNA sequence from clone DKEYP-81F11 in ...    34   2.6    2
(BX247944) Zebrafish DNA sequence from clone CH211-227L2 in ...    32   2.7    2
(BX649542) Zebrafish DNA sequence from clone CH211-51H1 in l...    36   2.7    5
(ET805207) CHO_OF700xj16r1.ab1 CHO_OF Nicotiana tabacum geno...    46   2.7    2
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple...    36   2.9    4
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   3.0    5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    38   3.1    5
(FH182269) CHO_OF3423xe24f1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   3.5    2
(AL981463) Danio rerio genomic clone DKEY-36C14, genomic sur...    34   3.6    2
(BJ387524) Dictyostelium discoideum cDNA clone:dds3k05, 5' e...    44   3.9    2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    38   4.1    7
(AU053549) Dictyostelium discoideum slug cDNA, clone SLI889.       40   4.3    2
(AC184609) Strongylocentrotus purpuratus clone R3-3084G12, W...    40   4.3    4
(DE228297) Trifolium pratense DNA, clone:RCG21160.                 38   4.6    2
(AA647289) vs87d03.r1 Barstead mouse myotubes MPLRB5 Mus mus...    36   5.2    2
(BZ498295) BONIA49TR BO_1.6_2_KB_tot Brassica oleracea genom...    38   5.3    3
(AK279689) Gryllus bimaculatus mRNA, GBcontig26550.                42   5.3    2
(CR318585) Zebrafish DNA sequence from clone CH211-153H7 in ...    46   5.3    1
(BX465868) Zebrafish DNA sequence from clone DKEY-42I9 in li...    46   5.3    1
(BX255931) Zebrafish DNA sequence from clone CH211-195B2 in ...    46   5.3    1
(BX005203) Zebrafish DNA sequence from clone DKEY-110C1 in l...    46   5.3    1
(GF061089) pRRL2:Newb:20080411:6773 USMARC Pig Breed SNP Dis...    46   5.3    1
(AL672209) Mouse DNA sequence from clone RP23-296N19 on chro...    46   5.3    1
(AL591126) Mouse DNA sequence from clone RP23-188A3 on chrom...    46   5.3    1
(AC167668) Mus musculus BAC clone RP24-241I19 from chromosom...    46   5.3    1
(AM479990) Vitis vinifera, whole genome shotgun sequence, co...    46   5.3    1
(AM456518) Vitis vinifera, whole genome shotgun sequence, co...    46   5.3    1
(FB654053) Sequence 1 from Patent WO2007118162.                    46   5.3    1
(DI107221) Method for producing L-amino acid by fermentation.      46   5.3    1
(DD463974) Method of producing L-threonine by fermentation.        46   5.3    1
(DD367313) Useful microorganisms for industry.                     46   5.3    1
(DD171864) Method of producing amino acid by fermentation.         46   5.3    1
(CS486515) Sequence 1 from Patent WO2007001097.                    46   5.3    1
(CS104136) Sequence 1 from Patent WO2005049808.                    46   5.3    1
(AY449461) Oikopleura dioica clone BACOIKO005 4xj24, complet...    46   5.3    1
(AY160107) Dictyostelium discoideum nucleotide exchange fact...    46   5.3    1
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    46   5.3    1
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    46   5.3    1
(AC138466) Homo sapiens 12 BAC RP13-977J11 (Roswell Park Can...    46   5.3    1
(AC007297) Homo sapiens 12 BAC RP11-690J15 (Roswell Park Can...    46   5.3    1
(AC129737) Rattus norvegicus clone CH230-506G1, *** SEQUENCI...    46   5.3    1
(AC128141) Rattus norvegicus clone CH230-390B2, *** SEQUENCI...    46   5.3    1
(AC115235) Rattus norvegicus clone CH230-227G8, *** SEQUENCI...    46   5.3    1
(AC114464) Rattus norvegicus clone CH230-14C7, WORKING DRAFT...    46   5.3    1
(CU862028) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.3    1
(CU633923) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.3    1
(CU571162) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   5.3    1
(CU459046) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.3    1
(CT025729) D.miranda DNA sequence *** SEQUENCING IN PROGRESS...    46   5.3    1
(CR354376) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   5.3    1
(AC230725) Bos taurus clone CH240-501C3, WORKING DRAFT SEQUE...    46   5.3    1
(AC202822) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    46   5.3    1
(AC184610) Strongylocentrotus purpuratus clone R3-1021P24, W...    46   5.3    1
(AC184602) Strongylocentrotus purpuratus clone R3-3093C3, WO...    46   5.3    1
(AC008161) Mus musculus clone RP23-182H5, *** SEQUENCING IN ...    46   5.3    1
(BX066409) Single read from an extremity of a full-length cD...    46   5.3    1
(BX066408) Single read from an extremity of a full-length cD...    46   5.3    1
(BX052066) Single read from an extremity of a full-length cD...    46   5.3    1
(BX045413) Single read from an extremity of a full-length cD...    46   5.3    1
(AZ452610) 1M0252L04R Mouse 10kb plasmid UUGC1M library Mus ...    46   5.3    1
(AZ452598) 1M0252J04R Mouse 10kb plasmid UUGC1M library Mus ...    46   5.3    1
(ET070082) QM0AAA3CD06RM1 CCL1 Citrus clementina genomic clo...    46   5.3    1
(EK264055) 1095462204570 Global-Ocean-Sampling_GS-31-01-01-1...    46   5.3    1
(DU062678) 79935 Tomato HindIII BAC Library Solanum lycopers...    46   5.3    1
(CW152806) 104_554_11144697_148_36331_043 Sorghum methylatio...    46   5.3    1
(CW152805) 104_554_11144697_116_36335_043 Sorghum methylatio...    46   5.3    1
(CT430815) Sus scrofa genomic clone CH242-464D10, genomic su...    46   5.3    1
(CT354137) Sus scrofa genomic clone CH242-379K12, genomic su...    46   5.3    1
(CL692419) PRI0159a_C03_2 - PRI0159a.BR (826) Mixed stage fo...    46   5.3    1
(CL651722) PRI0112d_G05 - PRI0112d.B21 (758) Mixed stage fos...    46   5.3    1
(CC790413) ZMMBBb0160H10.r ZMMBBb Zea mays subsp. mays genom...    46   5.3    1
(BH836282) BACPP9-P21.y Pristionchus pacificus BAC ends Pris...    46   5.3    1
(EB396166) PMAO-aaa86c12.g1 Lamprey_EST_Embryo Petromyzon ma...    46   5.3    1
(DV776229) Hw_Fat_34_050805_C10 Bos taurus CF-24-HW fat cDNA...    46   5.3    1
(DB923718) Manihot esculenta mRNA, clone: CAS01_011_C20, 5'end.    46   5.3    1
(AU061711) Dictyostelium discoideum slug cDNA, clone SLF515.       46   5.3    1
(AU040973) Mus musculus 4-cell embryo cDNA 3'-end sequence, ...    46   5.3    1
(AU040972) Mus musculus 4-cell embryo cDNA 3'-end sequence, ...    46   5.3    1
(AU040954) Mus musculus 4-cell embryo cDNA 3'-end sequence, ...    46   5.3    1
(AU040894) Mus musculus 4-cell embryo cDNA 3'-end sequence, ...    46   5.3    1
(CU620996) Theobroma cacao, mRNA sequence (KZ0AAA7YD05FM1).        46   5.3    1
(CU620919) Theobroma cacao, mRNA sequence (KZ0AAA6YN14FM1).        46   5.3    1
(CU618387) Theobroma cacao, mRNA sequence (KZ0AAA10YD07FM1).       46   5.3    1
(CU582295) Theobroma cacao, mRNA sequence (KZ0ABV5YG22FM1).        46   5.3    1
(CU582173) Theobroma cacao, mRNA sequence (KZ0ABV4YD24FM1).        46   5.3    1
(CU582014) Theobroma cacao, mRNA sequence (KZ0ABV2YI04FM1).        46   5.3    1
(CU581813) Theobroma cacao, mRNA sequence (KZ0ABV10YI12FM1).       46   5.3    1
(CU581745) Theobroma cacao, mRNA sequence (KZ0ABV9YO16FM1).        46   5.3    1
(CU581185) Theobroma cacao, mRNA sequence (KZ0ABV7YF03FM1).        46   5.3    1
(CU581030) Theobroma cacao, mRNA sequence (KZ0ABV6YK03FM1).        46   5.3    1
(CU580990) Theobroma cacao, mRNA sequence (KZ0ABV6YH15FM1).        46   5.3    1
(CU579051) Theobroma cacao, mRNA sequence (KZ0AB1YM24FM1).         46   5.3    1
(CU579006) Theobroma cacao, mRNA sequence (KZ0AB1YB17FM1).         46   5.3    1
(CU578949) Theobroma cacao, mRNA sequence (KZ0AB10YH07FM1).        46   5.3    1
(CU578853) Theobroma cacao, mRNA sequence (KZ0AB9YL05FM1).         46   5.3    1
(CU578412) Theobroma cacao, mRNA sequence (KZ0AB7YN07FM1).         46   5.3    1
(CU578093) Theobroma cacao, mRNA sequence (KZ0AB6YI12FM1).         46   5.3    1
(CU542694) Theobroma cacao, mRNA sequence (KZ0AAV10YI17FM1).       46   5.3    1
(CU535862) Theobroma cacao, mRNA sequence (KZ0AAQ11YI03FM1).       46   5.3    1
(CU529976) Theobroma cacao, mRNA sequence (KZ0ACAA6YH14FM1).       46   5.3    1
(CU529606) Theobroma cacao, mRNA sequence (KZ0ACAA2YP12FM1).       46   5.3    1
(CU527474) Theobroma cacao, mRNA sequence (KZ0ACAA2YH17FM1).       46   5.3    1
(CU527452) Theobroma cacao, mRNA sequence (KZ0ACAA2YG05FM1).       46   5.3    1
(CU526788) Theobroma cacao, mRNA sequence (KZ0ACL5YA08FM1).        46   5.3    1
(CU526006) Theobroma cacao, mRNA sequence (KZ0ACL4YD11FM1).        46   5.3    1
(CU524970) Theobroma cacao, mRNA sequence (KZ0ACB3YO04FM1).        46   5.3    1
(CU524900) Theobroma cacao, mRNA sequence (KZ0ACB3YB14FM1).        46   5.3    1
(CU517947) Theobroma cacao, mRNA sequence (KZ0ABH13YN23FM1).       46   5.3    1
(CU511861) Theobroma cacao, mRNA sequence (KZ0ACN2YJ06FM1).        46   5.3    1
(CU510351) Theobroma cacao, mRNA sequence (KZ0ACM3YC16FM1).        46   5.3    1
(CU504662) Theobroma cacao, mRNA sequence (KZ0ACAB2YA22FM1).       46   5.3    1
(CU501788) Theobroma cacao, mRNA sequence (KZ0ACQ7YC06FM1).        46   5.3    1
(CU501709) Theobroma cacao, mRNA sequence (KZ0ACQ4YP08FM1).        46   5.3    1
(CU501654) Theobroma cacao, mRNA sequence (KZ0ACQ3YP08FM1).        46   5.3    1
(CU491399) Theobroma cacao, mRNA sequence (KZ0ACAE7YG14FM1).       46   5.3    1
(CU482405) Theobroma cacao, mRNA sequence (KZ0AAT7YD18FM1).        46   5.3    1
(CU482203) Theobroma cacao, mRNA sequence (KZ0AAT6YB22FM1).        46   5.3    1
(CU482198) Theobroma cacao, mRNA sequence (KZ0AAT6YB12FM1).        46   5.3    1
(CU476926) Theobroma cacao, mRNA sequence (KZ0AAL2YD14FM1).        46   5.3    1
(CU476415) Theobroma cacao, mRNA sequence (KZ0AAL14YA11FM1).       46   5.3    1
(CO079872) GR__Ea42P10.r GR__Ea Gossypium raimondii cDNA clo...    46   5.3    1
(CO079871) GR__Ea42P10.f GR__Ea Gossypium raimondii cDNA clo...    46   5.3    1
(C90304) Dictyostelium discoideum slug cDNA, clone SSI780.         46   5.3    1
(BJ402036) Dictyostelium discoideum cDNA clone:dds20b08, 3' ...    46   5.3    1
(BJ365293) Dictyostelium discoideum cDNA clone:ddc34h21, 5' ...    46   5.3    1
(BJ335315) Dictyostelium discoideum cDNA clone:dda49b20, 5' ...    46   5.3    1
(BG300958) HVSMEb0019B09f Hordeum vulgare seedling shoot EST...    46   5.3    1
(BG084224) H3097H01-5 NIA Mouse 15K cDNA Clone Set Mus muscu...    46   5.3    1
(BG080322) H3052C06-5 NIA Mouse 15K cDNA Clone Set Mus muscu...    46   5.3    1
(BG071356) H3097H01-3 NIA Mouse 15K cDNA Clone Set Mus muscu...    46   5.3    1
(FD962350) RR1G237TF RR1(CS) Raphanus raphanistrum subsp. ma...    46   5.3    1
(FD556333) RR4EK05TF RR4(PB) Raphanus raphanistrum subsp. la...    46   5.3    1
(FD552664) RR4EK05JQ RR4(PB) Raphanus raphanistrum subsp. la...    46   5.3    1
(EY932511) RS1DY27TF RS1(AR) Raphanus sativus var. oleiformi...    46   5.3    1
(EY928221) RS1DY27JQ RS1(AR) Raphanus sativus var. oleiformi...    46   5.3    1
(EY898001) RR1DE96TF RR1(CS) Raphanus raphanistrum subsp. ma...    46   5.3    1
(U14003) Escherichia coli K-12 chromosomal region from 92.8 ...    46   5.3    1
(U00096) Escherichia coli str. K-12 substr. MG1655, complete...    46   5.3    1
(J01706) E.coli threonine operon with thrA, thrB and thrC ge...    46   5.3    1
(CP001063) Shigella boydii CDC 3083-94, complete genome.           46   5.3    1
(CP000948) Escherichia coli str. K12 substr. DH10B, complete...    46   5.3    1
(CP000946) Escherichia coli ATCC 8739, complete genome.            46   5.3    1
(CP000802) Escherichia coli HS, complete genome.                   46   5.3    1
(CP000800) Escherichia coli E24377A, complete genome.              46   5.3    1
(CP000266) Shigella flexneri 5 str. 8401, complete genome.         46   5.3    1
(CP000038) Shigella sonnei Ss046, complete genome.                 46   5.3    1
(CP000036) Shigella boydii Sb227, complete genome.                 46   5.3    1
(AP009240) Escherichia coli SE11 DNA, complete genome.             46   5.3    1
(AP009048) Escherichia coli str. K12 substr. W3110 DNA, comp...    46   5.3    1
(AM262974) Ruminococcus flavefaciens ORF2, scaC gene, scaA g...    46   5.3    1
(AE014073) Shigella flexneri 2a str. 2457T, complete genome.       46   5.3    1
(AE005674) Shigella flexneri 2a str. 301, complete genome.         46   5.3    1
(FE752818) CAYF2558.b1 CAYF Petrolisthes cinctipes heart, wh...    44   5.4    2
(AC114265) Dictyostelium discoideum chromosome 2 map 4520461...    38   5.7    3
(AC169058) Bos taurus clone CH240-213M12, WORKING DRAFT SEQU...    42   5.8    4
(BJ333571) Dictyostelium discoideum cDNA clone:dda43p02, 5' ...    38   5.8    2
(BJ361948) Dictyostelium discoideum cDNA clone:ddc19o08, 5' ...    36   6.0    2
(BJ427334) Dictyostelium discoideum cDNA clone:ddv62h01, 5' ...    44   6.5    2
(BJ328632) Dictyostelium discoideum cDNA clone:dda28l20, 5' ...    36   6.5    2
(EC821960) SME00002656 esmbsro2 Sawyeria marylandensis cDNA,...    38   6.5    2
(BJ331399) Dictyostelium discoideum cDNA clone:dda35n03, 5' ...    38   6.6    2
(BJ370330) Dictyostelium discoideum cDNA clone:ddc53b21, 5' ...    44   6.6    2
(BJ363473) Dictyostelium discoideum cDNA clone:ddc26i19, 5' ...    36   6.7    2
(BJ368505) Dictyostelium discoideum cDNA clone:ddc47b05, 5' ...    44   6.7    2
(BJ387881) Dictyostelium discoideum cDNA clone:dds5i18, 5' e...    36   6.8    2
(AU033655) Dictyostelium discoideum slug cDNA, clone SLB274.       38   6.8    2
(CR749749) Zebrafish DNA sequence from clone CH211-153P17 in...    34   6.8    6
(BJ328631) Dictyostelium discoideum cDNA clone:dda28l19, 5' ...    36   6.9    2
(DK059366) Oryzias latipes cDNA, clone: olea42l10, 5' end.         38   6.9    2
(AU061970) Dictyostelium discoideum slug cDNA, clone SLG821.       36   7.0    2
(BJ369772) Dictyostelium discoideum cDNA clone:ddc51o15, 5' ...    44   7.0    2
(FD477773) 51G1M13r1 Ps-n cDNA Library Pseudo-nitzschia mult...    40   7.0    2
(AC214610) MACACA MULATTA BAC clone CH250-13J8 from chromoso...    38   7.1    5
(AM143945) Oryzias latipes EST, clone McF0011D05-MGRbd1.           38   7.1    2
(EY330392) CAWY3447.fwd CAWY Helobdella robusta Subtracted E...    36   7.4    3
(DK101590) Oryzias latipes cDNA, clone: oleb35a07, 5' end.         38   7.5    2
(EC824904) SME00007735 esmbsro2 Sawyeria marylandensis cDNA,...    44   7.5    2
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    34   7.6    4
(DK138906) Oryzias latipes cDNA, clone: olec11n18, 5' end.         38   7.7    2
(BX004850) Zebrafish DNA sequence from clone CH211-51M24 in ...    36   8.0    5
(AM335113) Oryzias latipes EST, clone FOE002-P00109-DPE-F_K03.     38   8.1    2
(AM303667) Oryzias latipes EST, clone FOE002-P00020-DPE-F_J19.     38   8.4    2
(AM969851) Sparus aurata EST, clone cDN10P0001C07, 5'-end se...    36   8.5    2
(DK229563) Oryzias latipes cDNA, clone: olvl6g16, 5' end.          38   8.5    2
(CT437473) Sus scrofa genomic clone CH242-324G14, genomic su...    38   8.7    2
(EY346139) CAWZ14497.fwd CAWZ Helobdella robusta Primary Lat...    36   8.9    3
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    34   9.1    2
(EY306137) CAWX19754.fwd CAWX Helobdella robusta Primary Ear...    38   9.3    2
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ...    34   9.3    2
(CD052908) LITHZF000336 Zebrafish shield stage whole embryo ...    38   9.3    2
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d...    34   9.3    4
(AC131128) Rattus norvegicus clone CH230-23C17, *** SEQUENCI...    32   9.4    2
(CU467828) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   9.5    2
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...    40   9.6    3
(CU896665) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   9.6    2
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34...    34   9.6    2

>(BJ363775) Dictyostelium discoideum cDNA clone:ddc28o12, 5' end,
           single read.
          Length = 582

 Score = 1080 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Plus


Query: 429 aatcacaaccaaagagtaatatatcggttttaaaaccaactttggttgaatttataaatc 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  aatcacaaccaaagagtaatatatcggttttaaaaccaactttggttgaatttataaatc 97


Query: 489 aacccgatagtaaagatgatgaatcatcagtaaaatcaccaccattaccagtggagtcac 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  aacccgatagtaaagatgatgaatcatcagtaaaatcaccaccattaccagtggagtcac 157


Query: 549 aaccaatattcaattcaaaacaaagtgcaacaatggatggaattaccactcataaatcag 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aaccaatattcaattcaaaacaaagtgcaacaatggatggaattaccactcataaatcag 217


Query: 609 tatcgattacgatttccacatcgacatcaccatcttcaacaaccacaaccacatcaacta 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tatcgattacgatttccacatcgacatcaccatcttcaacaaccacaaccacatcaacta 277


Query: 669 ccacttcaattatagcagaagaaccatcgagtccaatattaccaactgcatcaccatcct 728
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccacttcaattatagcagaagaaccatcgagtccaatattaccaactgcatcaccatcct 337


Query: 729 cctcttcttcatcgataattacaaccgcaactgcttcaacaataccaatgtcaccttcat 788
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cctcttcttcatcgataattacaaccgcaactgcttcaacaataccaatgtcaccttcat 397


Query: 789 taccatcaataccatttcatgagtttgaaacaatggaatcctctaccacaacaactttat 848
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 taccatcaataccatttcatgagtttgaaacaatggaatcctctaccacaacaactttat 457


Query: 849 tatcagaaaataatggtggtggtggaggcagtagttgtaatgataatagtagaagaaata 908
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tatcagaaaataatggtggtggtggaggcagtagttgtaatgataatagtagaagaaata 517


Query: 909 gtttgaatatcttaccattaagattaaaatcattctcattttctgctccacaatctgatt 968
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtttgaatatcttaccattaagattaaaatcattctcattttctgctccacaatctgatt 577


Query: 969 caatg 973
           |||||
Sbjct: 578 caatg 582

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,550,758,912
Number of extensions: 106182010
Number of successful extensions: 12407384
Number of sequences better than 10.0: 314
Length of query: 2078
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 2054
Effective length of database: 96,409,374,237
Effective search space: 198024854682798
Effective search space used: 198024854682798
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U15940-1 (Contig-U15940-1Q) /CSM_Contig/Contig-U15940-1Q.Seq.d
         (2078 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,477,416,450
Number of extensions: 18207852
Number of successful extensions: 32238
Number of sequences better than 10.0: 0
Number of HSP's gapped: 32228
Number of HSP's successfully gapped: 0
Length of query: 692
Length of database: 1,051,180,864
Length adjustment: 136
Effective length of query: 556
Effective length of database: 611,008,840
Effective search space: 339720915040
Effective search space used: 339720915040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U15940-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 4
SF (FL, S) 3
CH (FL, L) 6
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0