NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15939-1
Contig ID Contig-U15939-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15939-1 (Contig-U15939-1Q) /CSM_Contig/Contig-U15939-1Q.Seq.d
TATAAAAGAAAACCGAAAACATTTAATAACAATTTTTTTTATTATTTAAT
TATTATTATATTATTTTGTTTATATTATTATTTAATTATTATTATTATTC
TTTTTTTTTATTTTATTATTATTATTGTTTTTTTTTTNATTTNATTTTTT
AAAATGGNAAANGGGAATAAATTAT----------ATAATACAATTGATG
GTTCATTTGATTTCTCTAAAAAAGTTGTTATCCCTCCTAAAAAGACTTTG
GAACGTTCAAATACTTCACCATTATTATCCTGTTCTTTAGAATTTTTAGG
TTCAATTAATACTGGTAATTCAACTACGACAACAACTACTACTACCACTA
CAACCACTACTACAACATTGGCTAATACTTCCACAAATTCAATGGTTAGT
GGTGAATCATTATCTTCAAGTTATTTAGTATCTGCATCATCAACACCATC
TTTGTCATCATTATTACCATTAACAACAATAACAACAACATTACAACAAA
CATTATTACCAATACCAACATTGTCATCTTCACCATCAACTACAAATACA
AATACAAATACAAATACAAATACAAATACAAATATAAATACAAATACACC
TTTATCATCATCAAATACAACATCAAATGATAATAATAATAATACTAATA
GTAATGGATTATCACCAAGATTACCAGAAAAACCAAAAGATTCAGCAAAA
CCAAAGTGTTATTCAAGCTAAATTAATTGAAATCTCAAGGAGAAGTTGGT
GAATTACCTTCATTAAATATTAGTGAAACAAATGATGGTATGGGGAAGTG
CCTGTATAGCATCATTATATGGTTGGGATTTTGAAAAGAAACAACAATTT
GGTACACCATTTGCTGACTGTTTTTGTATTACAACCGATGCTCATCCAAT
GATAAAGGCAGTACTTTCAGTTGCTGATGGCTCTGGTCATGGTGAAGATC
CTAAAAGGGCTGCCCAAATGTCAATTTTAGGTGCTAATCAATACATTGAA
AGTTTATTCGACCAAGATATTCCAACAACTAATGATCTTTTAACGGTTGT
CGGTAATTCAATTTTTGAAGGTCATAAACGTATTATTGAAGACGAATATT
ATCAAAATCAAGAAATTCATATTGAACCACGTGGTGCCACTACCTTTTGT
TTAGGTGTTCTCTCTAAAAGTGTAAATGAAAATTTAAATAATAGTTTAAT
AAATTCAAATACAAATAATATTATTTCAATGAATCAAAATAATAATTCAA
ATAATCCAAATAATTCAAATAGTCCAAATAATAGTACAAATGGAGTTTCA
AGCTCTGAACATGTAAATCATTTTAAAAGTTATATAAAACCATCAATTCA
AACAAGA
Gap gap included
Contig length 1347
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4604310
End point 4602964
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 6
Link to clone list U15939
List of clone(s) 

est1=CHR377F,1,175
est2=VFH618E,176,1347
est3=VFH566F,188,327
est4=CHM147Z,589,1292
est5=VFH566Z,672,1220
est6=CHR377Z,1094,1342
Translated Amino Acid sequence 
YKRKPKTFNNNFFYYLIIIILFCLYYYLIIIIILFFYFIIIIVFFXIXFFKMXXGNKL--
-

---NTIDGSFDFSKKVVIPPKKTLERSNTSPLLSCSLEFLGSINTGNSTTTTTTTTTTTT
TTTLANTSTNSMVSGESLSSSYLVSASSTPSLSSLLPLTTITTTLQQTLLPIPTLSSSPS
TTNTNTNTNTNTNTNINTNTPLSSSNTTSNDNNNNTNSNGLSPRLPEKPKDSAKPKCYSS
*in*nlkeklvnylh*ilvkqmmvwgsaciaslygwdfekkqqfgtpfadcfcittdahp
mikavlsvadgsghgedpkraaqmsilganqyieslfdqdipttndlltvvgnsifeghk
riiedeyyqnqeihieprgattfclgvlsksvnenlnnslinsntnniismnqnnnsnnp
nnsnspnnstngvsssehvnhfksyikpsiqtr
Translated Amino Acid sequence (All Frames) 
Frame A:
YKRKPKTFNNNFFYYLIIIILFCLYYYLIIIIILFFYFIIIIVFFXIXFFKMXXGNKL--
-

---iiqlmvhlislkkllsllkrlwnvqilhhyypvl*nf*vqlilviqlrqqlllplqp
llqhwlilpqiqwlvvnhylqvi*ylhhqhhlchhyyh*qq*qqhynkhyyqyqhchlhh
qlqiqiqiqiqiqiqi*iqihlyhhqiqhqmiiiiilivmdyhqdyqknqkiqqnqsviq
aklieisrrsw*itfiky**nk*wygevpv*hhymvgilkrnnnlvhhlltvfvlqpmli
q**rqyfqllmalvmvkilkglpkcqf*vlintlkvystkifqqlmif*rlsviqflkvi
nvllktniikikkfilnhvvplpfv*vfslkv*mki*iiv**iqiqiilfq*ikiiiqii
qiiqivqiivqmefqalnm*iilkvi*nhqfkq

Frame B:
ikenrkhlitiffii*lllyyfvyiii*llllffffilllllfffxfxflkwxxginy--
-

---*yn*wfi*fl*kscyps*kdfgtfkyftiiilffrifrfn*yw*fnydnnyyyhynh
yynig*yfhkfng*w*iiifklfsiciintifviiitinnnnnnittniitntnivifti
nykykykykykykykykykytfiiikynik*****y***wiitkitrktkrfsktkvlfk
ln*lksqgevgelpslnisetndgmgkclysiiiwlgf*kettiwytic*lflyynrcss
ndkgstfsc*wlwsw*rs*kgcpnvnfrc*sih*kfirprysnn**sfngcr*fnf*rs*
tyy*rrilsksrnsy*ttwchyllfrcsl*kck*kfk**fnkfkyk*yyfnesk**fk*s
k*fk*sk**ykwsfkl*tcksf*klyktinsnk

Frame C:
*kkteni**qffllfnyyyiilfillfnyyyysfflfyyyycfffxxif*ngkxe*i---

---NTIDGSFDFSKKVVIPPKKTLERSNTSPLLSCSLEFLGSINTGNSTTTTTTTTTTTT
TTTLANTSTNSMVSGESLSSSYLVSASSTPSLSSLLPLTTITTTLQQTLLPIPTLSSSPS
TTNTNTNTNTNTNTNINTNTPLSSSNTTSNDNNNNTNSNGLSPRLPEKPKDSAKPKCYSS
*in*nlkeklvnylh*ilvkqmmvwgsaciaslygwdfekkqqfgtpfadcfcittdahp
mikavlsvadgsghgedpkraaqmsilganqyieslfdqdipttndlltvvgnsifeghk
riiedeyyqnqeihieprgattfclgvlsksvnenlnnslinsntnniismnqnnnsnnp
nnsnspnnstngvsssehvnhfksyikpsiqtr
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15939-1 (Contig-U15939-1Q)
/CSM_Contig/Contig-U15939-1Q.Seq.d
         (1357 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15939-1 (Contig-U15939-1Q) /CSM_Contig/Conti...  1082  0.0
Contig-U09531-1 (Contig-U09531-1Q) /CSM_Contig/Conti...    54  6e-07
Contig-U15908-1 (Contig-U15908-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U15655-1 (Contig-U15655-1Q) /CSM_Contig/Conti...    50  9e-06
Contig-U13335-1 (Contig-U13335-1Q) /CSM_Contig/Conti...    50  9e-06
Contig-U16087-1 (Contig-U16087-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U15930-1 (Contig-U15930-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U11163-1 (Contig-U11163-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U12039-1 (Contig-U12039-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14394-1 (Contig-U14394-1Q) /CSM_Contig/Conti...    38  0.035

>Contig-U15939-1 (Contig-U15939-1Q) /CSM_Contig/Contig-U15939-1Q.Seq.d
          Length = 1357

 Score = 1082 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                        
Query: 628  tgataataataataatactaatagtaatggattatcaccaagattaccagaaaaaccaaa 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  tgataataataataatactaatagtaatggattatcaccaagattaccagaaaaaccaaa 687

                                                                        
Query: 688  agattcagcaaaaccaaagtgttattcaagctaaattaattgaaatctcaaggagaagtt 747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  agattcagcaaaaccaaagtgttattcaagctaaattaattgaaatctcaaggagaagtt 747

                                                                        
Query: 748  ggtgaattaccttcattaaatattagtgaaacaaatgatggtatggggaagtgcctgtat 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  ggtgaattaccttcattaaatattagtgaaacaaatgatggtatggggaagtgcctgtat 807

                                                                        
Query: 808  agcatcattatatggttgggattttgaaaagaaacaacaatttggtacaccatttgctga 867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  agcatcattatatggttgggattttgaaaagaaacaacaatttggtacaccatttgctga 867

                                                                        
Query: 868  ctgtttttgtattacaaccgatgctcatccaatgataaaggcagtactttcagttgctga 927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  ctgtttttgtattacaaccgatgctcatccaatgataaaggcagtactttcagttgctga 927

                                                                        
Query: 928  tggctctggtcatggtgaagatcctaaaagggctgcccaaatgtcaattttaggtgctaa 987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  tggctctggtcatggtgaagatcctaaaagggctgcccaaatgtcaattttaggtgctaa 987

                                                                        
Query: 988  tcaatacattgaaagtttattcgaccaagatattccaacaactaatgatcttttaacggt 1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  tcaatacattgaaagtttattcgaccaagatattccaacaactaatgatcttttaacggt 1047

                                                                        
Query: 1048 tgtcggtaattcaatttttgaaggtcataaacgtattattgaagacgaatattatcaaaa 1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 tgtcggtaattcaatttttgaaggtcataaacgtattattgaagacgaatattatcaaaa 1107

                                                                        
Query: 1108 tcaagaaattcatattgaaccacgtggtgccactaccttttgtttaggtgttctctctaa 1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 tcaagaaattcatattgaaccacgtggtgccactaccttttgtttaggtgttctctctaa 1167

                  
Query: 1168 aagtgt 1173
            ||||||
Sbjct: 1168 aagtgt 1173


 Score =  266 bits (134), Expect = 8e-71
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                       
Query: 186 ataatacaattgatggttcatttgatttctctaaaaaagttgttatccctcctaaaaaga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ataatacaattgatggttcatttgatttctctaaaaaagttgttatccctcctaaaaaga 245

                                                                       
Query: 246 ctttggaacgttcaaatacttcaccattattatcctgttctttagaatttttaggttcaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctttggaacgttcaaatacttcaccattattatcctgttctttagaatttttaggttcaa 305

                         
Query: 306 ttaatactggtaat 319
           ||||||||||||||
Sbjct: 306 ttaatactggtaat 319


 Score =  202 bits (102), Expect = 1e-51
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                       
Query: 368 ttggctaatacttccacaaattcaatggttagtggtgaatcattatcttcaagttattta 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttggctaatacttccacaaattcaatggttagtggtgaatcattatcttcaagttattta 427

                                                     
Query: 428 gtatctgcatcatcaacaccatctttgtcatcattattacca 469
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtatctgcatcatcaacaccatctttgtcatcattattacca 469


 Score =  131 bits (66), Expect = 3e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1292 ggagtttcaagctctgaacatgtaaatcattttaaaagttatataaaaccatcaattcaa 1351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 ggagtttcaagctctgaacatgtaaatcattttaaaagttatataaaaccatcaattcaa 1351

                  
Query: 1352 acaaga 1357
            ||||||
Sbjct: 1352 acaaga 1357


 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  tataaaagaaaaccgaaaacatttaataacaa 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  tataaaagaaaaccgaaaacatttaataacaa 32


 Score = 34.2 bits (17), Expect = 0.54
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 523 gtcatcttcaccatcaa 539
           |||||||||||||||||
Sbjct: 523 gtcatcttcaccatcaa 539


>Contig-U09531-1 (Contig-U09531-1Q) /CSM_Contig/Contig-U09531-1Q.Seq.d
          Length = 834

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 630 ataataataataatactaatagtaatggatt 660
           ||||||||||||||| |||||||||||||||
Sbjct: 108 ataataataataataataatagtaatggatt 138


 Score = 30.2 bits (15), Expect = 8.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 632 aataataataatactaata 650
           ||||||||||||| |||||
Sbjct: 107 aataataataataataata 125


>Contig-U15908-1 (Contig-U15908-1Q) /CSM_Contig/Contig-U15908-1Q.Seq.d
          Length = 4233

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                      
Query: 630  ataataataataatactaatagtaat 655
            ||||||||||||||||||||||||||
Sbjct: 1096 ataataataataatactaatagtaat 1121


 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                      
Query: 630  ataataataataatactaatagtaat 655
            ||||||||||||||||||||||||||
Sbjct: 2288 ataataataataatactaatagtaat 2313


 Score = 34.2 bits (17), Expect = 0.54
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 630  ataataataataatactaata 650
            ||||||||||||||| |||||
Sbjct: 3697 ataataataataataataata 3717


 Score = 34.2 bits (17), Expect = 0.54
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 630  ataataataataatactaata 650
            ||||||||||||||| |||||
Sbjct: 3694 ataataataataataataata 3714


 Score = 32.2 bits (16), Expect = 2.1
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                    
Query: 632  aataataataatactaatagtaat 655
            ||||||||||||| ||||| ||||
Sbjct: 3693 aataataataataataataataat 3716


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,039
Number of Sequences: 8402
Number of extensions: 38039
Number of successful extensions: 16705
Number of sequences better than 10.0: 1927
length of query: 1357
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1341
effective length of database: 7,941,110
effective search space: 10649028510
effective search space used: 10649028510
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3. 3
Homology vs DNA 
Query= Contig-U15939-1 (Contig-U15939-1Q) /CSM_Contig/Contig-U15939-1Q.Seq.d
         (1357 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   737   0.0    9
(BJ434146) Dictyostelium discoideum cDNA clone:ddv16c06, 3' ...   737   0.0    5
(BJ382962) Dictyostelium discoideum cDNA clone:ddc46m11, 3' ...   737   0.0    4
(BJ434317) Dictyostelium discoideum cDNA clone:ddv16c17, 3' ...   718   0.0    3
(BJ413505) Dictyostelium discoideum cDNA clone:ddv16c06, 5' ...   226   0.0    6
(BJ413651) Dictyostelium discoideum cDNA clone:ddv16c17, 5' ...   244   7e-60  1
(BJ386009) Dictyostelium discoideum cDNA clone:ddc56j19, 3' ...   127   9e-52  2
(AU284990) Dictyostelium discoideum gamete cDNA clone:FC-BS1...    88   1e-12  1
(BJ371152) Dictyostelium discoideum cDNA clone:ddc56j19, 5' ...    62   7e-09  2
(EK299889) 1095462360916 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.6    3
(CR391980) Zebrafish DNA sequence from clone CH211-194A23 in...    46   3.4    1
(AL672288) Mouse DNA sequence from clone RP23-186F4 on chrom...    46   3.4    1
(AL589678) Human DNA sequence from clone RP11-74C3 on chromo...    46   3.4    1
(AC069549) Homo sapiens chromosome 10 clone RP11-575A19, com...    46   3.4    1
(AC067743) Homo sapiens chromosome 10 clone RP11-441P16, com...    46   3.4    1
(AC150537) Bos taurus clone CH240-122P6, WORKING DRAFT SEQUE...    46   3.4    1
(AL596091) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   3.4    1
(AC214581) Bos taurus clone CH240-122P6, WORKING DRAFT SEQUE...    46   3.4    1
(AC166944) Bos taurus clone CH240-195O15, WORKING DRAFT SEQU...    46   3.4    1
(FH240748) CHO_OF3106xj03f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   3.4    1
(CT297778) Sus scrofa genomic clone CH242-250E1, genomic sur...    46   3.4    1
(FD255771) CBZF6433.g1 CBZF: Normalized blue catfish cDNA li...    46   3.4    1
(FD255770) CBZF6433.b1 CBZF: Normalized blue catfish cDNA li...    46   3.4    1
(CP000924) Thermoanaerobacter pseudethanolicus ATCC 33223, c...    46   3.4    1
(CP000923) Thermoanaerobacter sp. X514, complete genome.           46   3.4    1
(DD000807) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH...    40   4.5    3
(AX059492) Sequence 225 from Patent WO0055325.                     40   4.5    3
(EH016801) USDA-FP_189266 Lysiphlebus testaceipes adult whol...    32   6.7    3
(EU028330) Glycine max clone BAC gmw1-29F06 genomic sequence.      44   8.2    2
(AC202309) Medicago truncatula clone mth2-123a10, WORKING DR...    36   8.6    6
(AC125125) Mus musculus BAC clone RP24-274E6 from chromosome...    44   9.9    2

>(AC116957) Dictyostelium discoideum chromosome 2 map 1685067-2090751
             strain AX4, complete sequence.
          Length = 405682

 Score =  737 bits (372), Expect(9) = 0.0
 Identities = 372/372 (100%)
 Strand = Plus / Plus


Query: 793   gggaagtgcctgtatagcatcattatatggttgggattttgaaaagaaacaacaatttgg 852
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36856 gggaagtgcctgtatagcatcattatatggttgggattttgaaaagaaacaacaatttgg 36915


Query: 853   tacaccatttgctgactgtttttgtattacaaccgatgctcatccaatgataaaggcagt 912
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36916 tacaccatttgctgactgtttttgtattacaaccgatgctcatccaatgataaaggcagt 36975


Query: 913   actttcagttgctgatggctctggtcatggtgaagatcctaaaagggctgcccaaatgtc 972
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36976 actttcagttgctgatggctctggtcatggtgaagatcctaaaagggctgcccaaatgtc 37035


Query: 973   aattttaggtgctaatcaatacattgaaagtttattcgaccaagatattccaacaactaa 1032
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37036 aattttaggtgctaatcaatacattgaaagtttattcgaccaagatattccaacaactaa 37095


Query: 1033  tgatcttttaacggttgtcggtaattcaatttttgaaggtcataaacgtattattgaaga 1092
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37096 tgatcttttaacggttgtcggtaattcaatttttgaaggtcataaacgtattattgaaga 37155


Query: 1093  cgaatattatcaaaatcaagaaattcatattgaaccacgtggtgccactaccttttgttt 1152
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37156 cgaatattatcaaaatcaagaaattcatattgaaccacgtggtgccactaccttttgttt 37215


Query: 1153  aggtgttctctc 1164
             ||||||||||||
Sbjct: 37216 aggtgttctctc 37227

 Score =  268 bits (135), Expect(9) = 0.0
 Identities = 135/135 (100%)
 Strand = Plus / Plus


Query: 186   ataatacaattgatggttcatttgatttctctaaaaaagttgttatccctcctaaaaaga 245
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36252 ataatacaattgatggttcatttgatttctctaaaaaagttgttatccctcctaaaaaga 36311


Query: 246   ctttggaacgttcaaatacttcaccattattatcctgttctttagaatttttaggttcaa 305
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36312 ctttggaacgttcaaatacttcaccattattatcctgttctttagaatttttaggttcaa 36371


Query: 306   ttaatactggtaatt 320
             |||||||||||||||
Sbjct: 36372 ttaatactggtaatt 36386

 Score =  180 bits (91), Expect(9) = 0.0
 Identities = 91/91 (100%)
 Strand = Plus / Plus


Query: 368   ttggctaatacttccacaaattcaatggttagtggtgaatcattatcttcaagttattta 427
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36434 ttggctaatacttccacaaattcaatggttagtggtgaatcattatcttcaagttattta 36493


Query: 428   gtatctgcatcatcaacaccatctttgtcat 458
             |||||||||||||||||||||||||||||||
Sbjct: 36494 gtatctgcatcatcaacaccatctttgtcat 36524

 Score =  131 bits (66), Expect(9) = 0.0
 Identities = 66/66 (100%)
 Strand = Plus / Plus


Query: 1292  ggagtttcaagctctgaacatgtaaatcattttaaaagttatataaaaccatcaattcaa 1351
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37355 ggagtttcaagctctgaacatgtaaatcattttaaaagttatataaaaccatcaattcaa 37414


Query: 1352  acaaga 1357
             ||||||
Sbjct: 37415 acaaga 37420

 Score =  117 bits (59), Expect(9) = 0.0
 Identities = 59/59 (100%)
 Strand = Plus / Plus


Query: 646   taatagtaatggattatcaccaagattaccagaaaaaccaaaagattcagcaaaaccaa 704
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36712 taatagtaatggattatcaccaagattaccagaaaaaccaaaagattcagcaaaaccaa 36770

 Score =  109 bits (55), Expect(9) = 0.0
 Identities = 55/55 (100%)
 Strand = Plus / Plus


Query: 740   gagaagttggtgaattaccttcattaaatattagtgaaacaaatgatggtatggg 794
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36804 gagaagttggtgaattaccttcattaaatattagtgaaacaaatgatggtatggg 36858

 Score = 71.9 bits (36), Expect(9) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 704   aagtgttattcaagctaaattaattgaaatctcaag 739
             ||||||||||||||||||||||||||||||||||||
Sbjct: 36769 aagtgttattcaagctaaattaattgaaatctcaag 36804

 Score = 61.9 bits (31), Expect(9) = 0.0
 Identities = 31/31 (100%)
 Strand = Plus / Plus


Query: 1     tataaaagaaaaccgaaaacatttaataaca 31
             |||||||||||||||||||||||||||||||
Sbjct: 34856 tataaaagaaaaccgaaaacatttaataaca 34886

 Score = 36.2 bits (18), Expect(9) = 0.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus


Query: 523   gtcatcttcaccatcaac 540
             ||||||||||||||||||
Sbjct: 36589 gtcatcttcaccatcaac 36606

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,085,802,479
Number of extensions: 62745798
Number of successful extensions: 5027524
Number of sequences better than 10.0: 31
Length of query: 1357
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1333
Effective length of database: 96,409,374,237
Effective search space: 128513695857921
Effective search space used: 128513695857921
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U15939-1 (Contig-U15939-1Q) /CSM_Contig/Contig-U15939-1Q.Seq.d
         (1357 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089514_1(AY089514|pid:none) Drosophila melanogaster GH23026 fu...    43   0.030

>AY089514_1(AY089514|pid:none) Drosophila melanogaster GH23026 full
            insert cDNA.
          Length = 709

 Score = 42.7 bits (99), Expect = 0.030
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
 Frame = +2

Query: 812  SLYGWDFEKKQQFGTPFADCFCITTDAHPMIKAVLSVADGSGHGEDPKRAAQMSILGANQ 991
            SLY  +   K+  G P ADC+ +         A +++ADG   G+  + AA+ ++ G
Sbjct: 261  SLYETNMLTKEPMGNPIADCYGMVVRGD---SAAMAMADGVNWGDGARLAARSAVHGCLD 317

Query: 992  YIE-SLFDQDI----PTTNDLLTVVGNSIFEGHKRIIE 1090
            Y++ ++F Q +     TT ++   +   ++EGH  I+E
Sbjct: 318  YLDRAVFGQALECRATTTQEVFVSLLRGLWEGHGCILE 355

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,330,963,802
Number of extensions: 21676457
Number of successful extensions: 53222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53219
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 320
Effective length of database: 623,955,076
Effective search space: 199665624320
Effective search space used: 199665624320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.00  gvh: 0.49  alm: 0.03  top: 0.27  tms: 0.07  mit: 0.33  mip: 0.02
 nuc: 0.06  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 1.07  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 20.0 %: Golgi
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for Contig-U15939-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0