| Contig-U15936-1 |
| Contig ID |
Contig-U15936-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
2151 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
1055194 |
| End point |
1053040 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
5 |
| Number of EST |
6 |
| Link to clone list |
U15936 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
Query= Contig-U15936-1 (Contig-U15936-1Q)
/CSM_Contig/Contig-U15936-1Q.Seq.d
(2161 letters)
Database: CSM
8402 sequences; 8,075,542 total letters
Score E
Sequences producing significant alignments: (bits) Value
Contig-U15936-1 (Contig-U15936-1Q) /CSM_Contig/Conti... 1590 0.0
Contig-U16080-1 (Contig-U16080-1Q) /CSM_Contig/Conti... 690 0.0
Contig-U14955-1 (Contig-U14955-1Q) /CSM_Contig/Conti... 52 4e-06
Contig-U13001-1 (Contig-U13001-1Q) /CSM_Contig/Conti... 52 4e-06
Contig-U15270-1 (Contig-U15270-1Q) /CSM_Contig/Conti... 48 6e-05
Contig-U16304-1 (Contig-U16304-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U16268-1 (Contig-U16268-1Q) /CSM_Contig/Conti... 44 9e-04
Contig-U14185-1 (Contig-U14185-1Q) /CSM_Contig/Conti... 44 9e-04
Contig-U11477-1 (Contig-U11477-1Q) /CSM_Contig/Conti... 44 9e-04
>Contig-U15936-1 (Contig-U15936-1Q) /CSM_Contig/Contig-U15936-1Q.Seq.d
Length = 2161
Score = 1590 bits (802), Expect = 0.0
Identities = 832/832 (100%)
Strand = Plus / Plus
Query: 1 catttttatttggcacgtcttcaacaacttcaaatccagcacaaactacaactccaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catttttatttggcacgtcttcaacaacttcaaatccagcacaaactacaactccaacca 60
Query: 61 cttctacacctacgccctcctctagtatctttggtcaaccaccaactagtagtagtgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttctacacctacgccctcctctagtatctttggtcaaccaccaactagtagtagtgttt 120
Query: 121 tcggttctaaaccaaccgtttttggttcagcatcatcaaatagttcaagtgttttcggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcggttctaaaccaaccgtttttggttcagcatcatcaaatagttcaagtgttttcggtc 180
Query: 181 aaactacaacaaaaccatcaactggttcaagtgtttttggccaaaattcatccagtgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaactacaacaaaaccatcaactggttcaagtgtttttggccaaaattcatccagtgttt 240
Query: 241 ttggtcaaactactacaccatcaagtggaacaggtgtttttggccaaaattcatccagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttggtcaaactactacaccatcaagtggaacaggtgtttttggccaaaattcatccagtg 300
Query: 301 tttttggtcaaacttccacgggtacaggtgtttttggccaaaattcatccagcatttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttttggtcaaacttccacgggtacaggtgtttttggccaaaattcatccagcatttttg 360
Query: 361 gtcaatcaaatggggtaatgggttcgacatcaactccatcctcaacaagtatttttggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcaatcaaatggggtaatgggttcgacatcaactccatcctcaacaagtatttttggtg 420
Query: 421 tcaagaaatccgatgaacttacaaagaagactgaagaatctgtaaagaagnnnnnnnnnn 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaagaaatccgatgaacttacaaagaagactgaagaatctgtaaagaagnnnnnnnnnn 480
Query: 481 gcagtaatactattactttcaacgcaccaactttattcggtaacaataacaatagtaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcagtaatactattactttcaacgcaccaactttattcggtaacaataacaatagtaatc 540
Query: 541 catcaaacttatttggcagtggtaataacaattcttcatcactatttggtggcaattcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 catcaaacttatttggcagtggtaataacaattcttcatcactatttggtggcaattcaa 600
Query: 601 caaccatccaaccatcgcaatcattatttggaactaagtcaactgaaaccaaatctgatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caaccatccaaccatcgcaatcattatttggaactaagtcaactgaaaccaaatctgatg 660
Query: 661 acccaatgtcgcttaaagaaatgtcaaatacaattcaagataatgatgatcaaaattcag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acccaatgtcgcttaaagaaatgtcaaatacaattcaagataatgatgatcaaaattcag 720
Query: 721 attcagaatcacatgaagaattagaatcaggatcagaagaagaagaagaacaacaacaac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 attcagaatcacatgaagaattagaatcaggatcagaagaagaagaagaacaacaacaac 780
Query: 781 aaccaaaagttacattgttatcatcttcatttactcccccatcatttgctcc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aaccaaaagttacattgttatcatcttcatttactcccccatcatttgctcc 832
Score = 835 bits (421), Expect = 0.0
Identities = 427/427 (100%)
Strand = Plus / Plus
Query: 956 aaaacctgaaaatacatcaacaccaacatcatcaatctttggatcatttagttctcaacc 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 aaaacctgaaaatacatcaacaccaacatcatcaatctttggatcatttagttctcaacc 1015
Query: 1016 aagtggtggtggtatttcagcatttggaccagtttctagtaattcatcatctccatttgg 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 aagtggtggtggtatttcagcatttggaccagtttctagtaattcatcatctccatttgg 1075
Query: 1076 aagtggtttcggttcagcatcaataccatcatttggacaatctcaagttaacccattaac 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 aagtggtttcggttcagcatcaataccatcatttggacaatctcaagttaacccattaac 1135
Query: 1136 aatcaatccaacttcaacttctccaacagccgtatttggaggttcaactacttctcaatt 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 aatcaatccaacttcaacttctccaacagccgtatttggaggttcaactacttctcaatt 1195
Query: 1196 ctcatcatcatcaccagcaccaatttttggttcaactgcaactattaaaacatttggcga 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 ctcatcatcatcaccagcaccaatttttggttcaactgcaactattaaaacatttggcga 1255
Query: 1256 tttatcgaaaccatcnttatcaaataatgaaaataaagaccaaacttcatcatcacnttc 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 tttatcgaaaccatcnttatcaaataatgaaaataaagaccaaacttcatcatcacnttc 1315
Query: 1316 aaaaccatcaccatcaccatcaaatccaacttttgaatctattaacaaagaaaaagaaag 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 aaaaccatcaccatcaccatcaaatccaacttttgaatctattaacaaagaaaaagaaag 1375
Query: 1376 tgttgag 1382
|||||||
Sbjct: 1376 tgttgag 1382
Score = 161 bits (81), Expect = 6e-39
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1729 actttagaagaaatcaaacaatcaattgaatctgaatctgatananaagangatnnnntg 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 actttagaagaaatcaaacaatcaattgaatctgaatctgatananaagangatnnnntg 1788
Query: 1789 gaaaaagtattttcaagaattgaagaaactataaaaccaaac 1830
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 gaaaaagtattttcaagaattgaagaaactataaaaccaaac 1830
Score = 69.9 bits (35), Expect = 2e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1513 ctttggaagaaactaaacaatcaattgaatctgat 1547
|||||||||||||||||||||||||||||||||||
Sbjct: 1513 ctttggaagaaactaaacaatcaattgaatctgat 1547
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1518 gaagaaactaaacaatcaattgaatctgat 1547
||||||||||||||||||||||||||||||
Sbjct: 1945 gaagaaactaaacaatcaattgaatctgat 1974
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1729 actttagaagaaatcaaacaatcaattgaatc 1760
||||||||||||| ||||||||||||||||||
Sbjct: 1620 actttagaagaaaccaaacaatcaattgaatc 1651
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1732 ttagaagaaatcaaacaatcaattgaatctga 1763
|||||||||| ||||||||||||||||||||
Sbjct: 1942 ttagaagaaactaaacaatcaattgaatctga 1973
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1952 ctaaacaatcaattgaatctgat 1974
|||||||||||||||||||||||
Sbjct: 1525 ctaaacaatcaattgaatctgat 1547
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1513 ctttggaagaaactaaacaatcaattgaatctgat 1547
|||| ||||||||||||||| |||||||| |||||
Sbjct: 2048 ctttagaagaaactaaacaaccaattgaaactgat 2082
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1952 ctaaacaatcaattgaatctgat 1974
|||||||||||||||||||||||
Sbjct: 1952 ctaaacaatcaattgaatctgat 1974
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1513 ctttggaagaaactaaacaatcaattgaatc 1543
|||| |||||||| |||||||||||||||||
Sbjct: 1621 ctttagaagaaaccaaacaatcaattgaatc 1651
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1633 ccaaacaatcaattgaatcggga 1655
|||||||||||||||||||||||
Sbjct: 1633 ccaaacaatcaattgaatcggga 1655
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1729 actttagaagaaatcaaacaatcaattgaatctga 1763
||||| ||||||| ||||||||||||||||||||
Sbjct: 1512 actttggaagaaactaaacaatcaattgaatctga 1546
Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1513 ctttggaagaaactaaacaatcaattgaatctga 1546
|||| ||||||| ||||||||||||||||||||
Sbjct: 1730 ctttagaagaaatcaaacaatcaattgaatctga 1763
Score = 40.1 bits (20), Expect = 0.014
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1954 aaacaatcaattgaatctga 1973
||||||||||||||||||||
Sbjct: 1744 aaacaatcaattgaatctga 1763
Score = 38.2 bits (19), Expect = 0.055
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 1729 actttagaagaaatcaaacaatcaattgaatctga 1763
||||||||||||| |||||| |||||||| ||||
Sbjct: 2047 actttagaagaaactaaacaaccaattgaaactga 2081
Score = 38.2 bits (19), Expect = 0.055
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 802 catcttcatttactcccccatcatttgctcc 832
|||| |||||| |||| ||||||||||||||
Sbjct: 922 catcatcatttgctcctccatcatttgctcc 952
Score = 38.2 bits (19), Expect = 0.055
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 802 catcttcatttactcccccatcatttgctcc 832
|||| |||||| |||| ||||||||||||||
Sbjct: 862 catcatcatttgctcctccatcatttgctcc 892
Score = 36.2 bits (18), Expect = 0.22
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 807 tcatttactcccccatcatttgctcc 832
|||||| |||| ||||||||||||||
Sbjct: 822 tcatttgctcctccatcatttgctcc 847
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1634 caaacaatcaattgaatc 1651
||||||||||||||||||
Sbjct: 1743 caaacaatcaattgaatc 1760
Score = 36.2 bits (18), Expect = 0.22
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 807 tcatttactcccccatcatttgctcc 832
|||||| |||| ||||||||||||||
Sbjct: 882 tcatttgctcctccatcatttgctcc 907
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1635 aaacaatcaattgaatc 1651
|||||||||||||||||
Sbjct: 1954 aaacaatcaattgaatc 1970
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1954 aaacaatcaattgaatc 1970
|||||||||||||||||
Sbjct: 1635 aaacaatcaattgaatc 1651
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1635 aaacaatcaattgaatc 1651
|||||||||||||||||
Sbjct: 1527 aaacaatcaattgaatc 1543
>Contig-U16080-1 (Contig-U16080-1Q) /CSM_Contig/Contig-U16080-1Q.Seq.d
Length = 2570
Score = 690 bits (348), Expect = 0.0
Identities = 351/352 (99%)
Strand = Plus / Plus
Query: 481 gcagtaatactattactttcaacgcaccaactttattcggtaacaataacaatagtaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcagtaatactattactttcaacgcaccaactttattcggtaacaataacaatagtaatc 576
Query: 541 catcaaacttatttggcagtggtaataacaattcttcatcactatttggtggcaattcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catcaaacttatttggcagtggtaataacaattcttcatcactatttggtggcaattcaa 636
Query: 601 caaccatccaaccatcgcaatcattatttggaactaagtcaactgaaaccaaatctgatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 caaccatccaaccatcgcaatcattatttggaactaagtcaactgaaaccaaatctgatg 696
Query: 661 acccaatgtcgcttaaagaaatgtcaaatacaattcaagataatgatgatcaaaattcag 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 697 acccaatgtcgcttaaagaaatgtcaaatacaattcaagataatgatgctcaaaattcag 756
Query: 721 attcagaatcacatgaagaattagaatcaggatcagaagaagaagaagaacaacaacaac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 attcagaatcacatgaagaattagaatcaggatcagaagaagaagaagaacaacaacaac 816
Query: 781 aaccaaaagttacattgttatcatcttcatttactcccccatcatttgctcc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aaccaaaagttacattgttatcatcttcatttactcccccatcatttgctcc 868
Score = 456 bits (230), Expect = e-128
Identities = 282/300 (94%)
Strand = Plus / Plus
Query: 1083 ttcggttcagcatcaataccatcatttggacaatctcaagttaacccattaacaatcaat 1142
||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1074 ttcggttcaacaacaattccatcatttggacaatctcaagttaatccattaacaatcaat 1133
Query: 1143 ccaacttcaacttctccaacagccgtatttggaggttcaactacttctcaattctcatca 1202
||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct: 1134 ccaacctcaacttctccaacaccagtatttggaggttcaactacctctcaattctcatca 1193
Query: 1203 tcatcaccagcaccaatttttggttcaactgcaactattaaaacatttggcgatttatcg 1262
|||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 1194 tcatcaccagcaccaattttcggctcaactgcaactattaaaacatttggtgatttatca 1253
Query: 1263 aaaccatcnttatcaaataatgaaaataaagaccaaacttcatcatcacnttcaaaacca 1322
||| |||| | ||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 1254 aaatcatcctcatcaaataatgaaaataaagaccaaccatcatcatcaccttcaaaacca 1313
Query: 1323 tcaccatcaccatcaaatccaacttttgaatctattaacaaagaaaaagaaagtgttgag 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 tcaccatcaccatcaaatccaacttttgaatctattaacaaagaaaaagaaagtgttgag 1373
Score = 226 bits (114), Expect = 1e-58
Identities = 125/128 (97%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 956 aaaacctgaaaatacatcaacaccaacatcatcaatctttggatcatttagttctcaacc 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 aaaacctgaaaatacatcaacaccaacatcatcaatctttggatcatttagttctcaacc 991
Query: 1016 aagtggtggtggtatttcagcatttggaccagtttctagtaattcatca---tctccatt 1072
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 992 aagtggtggtggtatttcagcatttggaccagtttctagtaattcatcatcgtctccatt 1051
Query: 1073 tggaagtg 1080
||||||||
Sbjct: 1052 tggaagtg 1059
Score = 153 bits (77), Expect = 1e-36
Identities = 106/116 (91%), Gaps = 6/116 (5%)
Strand = Plus / Plus
Query: 491 tattactttcaacgcaccaactttattcggtaacaataacaatagtaatccatcaaactt 550
|||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||
Sbjct: 86 tattactttcaatgcaccaaatatattcggtaacaata------gtaatccatcaaactt 139
Query: 551 atttggcagtggtaataacaattcttcatcactatttggtggcaattcaacaacca 606
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 140 atttggcagtggtaataacaattcttcatcactatttggtggtaattcaacaacca 195
Score = 127 bits (64), Expect = 8e-29
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 1734 agaagaaatcaaacaatcaattgaatctgaatctgatananaagangatnnnntggaaaa 1793
|||||||| |||||||||||||||||||||||||||| | |||| ||| |||||||
Sbjct: 1890 agaagaaactaaacaatcaattgaatctgaatctgataaaaaagaagatgaaatggaaaa 1949
Query: 1794 agtattttcaagaattgaagaaactataaaaccaaac 1830
|| ||||||||||||||||||||||||||||||||||
Sbjct: 1950 agaattttcaagaattgaagaaactataaaaccaaac 1986
Score = 69.9 bits (35), Expect = 2e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1513 ctttggaagaaactaaacaatcaattgaatctgat 1547
|||||||||||||||||||||||||||||||||||
Sbjct: 1609 ctttggaagaaactaaacaatcaattgaatctgat 1643
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1518 gaagaaactaaacaatcaattgaatctgat 1547
||||||||||||||||||||||||||||||
Sbjct: 1506 gaagaaactaaacaatcaattgaatctgat 1535
Score = 58.0 bits (29), Expect = 6e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1518 gaagaaactaaacaatcaattgaatctga 1546
|||||||||||||||||||||||||||||
Sbjct: 1891 gaagaaactaaacaatcaattgaatctga 1919
Score = 58.0 bits (29), Expect = 6e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1729 actttagaagaaatcaaacaatcaattgaatct 1761
||||||||||||| |||||||||||||||||||
Sbjct: 1716 actttagaagaaaccaaacaatcaattgaatct 1748
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1732 ttagaagaaatcaaacaatcaattgaatctga 1763
|||||||||| ||||||||||||||||||||
Sbjct: 1503 ttagaagaaactaaacaatcaattgaatctga 1534
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1513 ctttggaagaaactaaacaatcaattgaatct 1544
|||| |||||||| ||||||||||||||||||
Sbjct: 1717 ctttagaagaaaccaaacaatcaattgaatct 1748
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1729 actttagaagaaatcaaacaatcaattgaatctga 1763
||||| ||||||| ||||||||||||||||||||
Sbjct: 1608 actttggaagaaactaaacaatcaattgaatctga 1642
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1952 ctaaacaatcaattgaatctgat 1974
|||||||||||||||||||||||
Sbjct: 1621 ctaaacaatcaattgaatctgat 1643
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1952 ctaaacaatcaattgaatctgat 1974
|||||||||||||||||||||||
Sbjct: 1513 ctaaacaatcaattgaatctgat 1535
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1952 ctaaacaatcaattgaatctga 1973
||||||||||||||||||||||
Sbjct: 1898 ctaaacaatcaattgaatctga 1919
Score = 38.2 bits (19), Expect = 0.055
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 802 catcttcatttactcccccatcatttgctcc 832
|||| |||||| |||| ||||||||||||||
Sbjct: 898 catcatcatttgctcctccatcatttgctcc 928
Score = 38.2 bits (19), Expect = 0.055
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1633 ccaaacaatcaattgaatc 1651
|||||||||||||||||||
Sbjct: 1729 ccaaacaatcaattgaatc 1747
Score = 36.2 bits (18), Expect = 0.22
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 807 tcatttactcccccatcatttgctcc 832
|||||| |||| ||||||||||||||
Sbjct: 858 tcatttgctcctccatcatttgctcc 883
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1954 aaacaatcaattgaatct 1971
||||||||||||||||||
Sbjct: 1731 aaacaatcaattgaatct 1748
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1635 aaacaatcaattgaatc 1651
|||||||||||||||||
Sbjct: 1623 aaacaatcaattgaatc 1639
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1635 aaacaatcaattgaatc 1651
|||||||||||||||||
Sbjct: 1515 aaacaatcaattgaatc 1531
Score = 34.2 bits (17), Expect = 0.87
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1321 catcaccatcaccatcaaatccaac 1345
|||||||||||||| |||| |||||
Sbjct: 2345 catcaccatcaccaacaaaaccaac 2369
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1635 aaacaatcaattgaatc 1651
|||||||||||||||||
Sbjct: 1900 aaacaatcaattgaatc 1916
Score = 34.2 bits (17), Expect = 0.87
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1198 catcatcatcaccagcaccaa 1218
|||||||||||||| ||||||
Sbjct: 2339 catcatcatcaccatcaccaa 2359
Score = 32.2 bits (16), Expect = 3.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1318 aaccatcaccatcaccatca 1337
|||||||| |||||||||||
Sbjct: 2336 aaccatcatcatcaccatca 2355
>Contig-U14955-1 (Contig-U14955-1Q) /CSM_Contig/Contig-U14955-1Q.Seq.d
Length = 1403
Score = 52.0 bits (26), Expect = 4e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 755 agaagaagaagaagaacaacaacaacaaccaaaa 788
|||||||||| ||||| |||||||||||||||||
Sbjct: 1203 agaagaagaacaagaagaacaacaacaaccaaaa 1236
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 770 acaacaacaacaaccaa 786
|||||||||||||||||
Sbjct: 1267 acaacaacaacaaccaa 1283
Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,529
Number of Sequences: 8402
Number of extensions: 49529
Number of successful extensions: 14028
Number of sequences better than 10.0: 679
length of query: 2161
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2144
effective length of database: 7,932,708
effective search space: 17007725952
effective search space used: 17007725952
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
|
| dna update |
2009. 3. 1 |
| Homology vs DNA |
Query= Contig-U15936-1 (Contig-U15936-1Q) /CSM_Contig/Contig-U15936-1Q.Seq.d
(2161 letters)
Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ370512) Dictyostelium discoideum cDNA clone:ddc54k09, 5' ... 930 0.0 1
(BJ402100) Dictyostelium discoideum cDNA clone:dds20b14, 3' ... 783 0.0 2
(BJ397610) Dictyostelium discoideum cDNA clone:dds46m22, 5' ... 424 0.0 3
(BJ385268) Dictyostelium discoideum cDNA clone:ddc54k09, 3' ... 597 e-167 2
(BJ408775) Dictyostelium discoideum cDNA clone:dds46m22, 3' ... 321 e-139 4
(BJ369742) Dictyostelium discoideum cDNA clone:ddc51i13, 5' ... 264 e-131 3
(BJ389898) Dictyostelium discoideum cDNA clone:dds20b14, 5' ... 383 e-101 1
(AU060305) Dictyostelium discoideum slug cDNA, clone SLJ127. 242 5e-59 1
(BJ333867) Dictyostelium discoideum cDNA clone:dda44g07, 5' ... 151 3e-41 2
(BJ335978) Dictyostelium discoideum cDNA clone:dda52c11, 5' ... 125 7e-24 1
(AU060456) Dictyostelium discoideum slug cDNA, clone SLJ781. 117 2e-21 1
(AU053842) Dictyostelium discoideum slug cDNA, clone SLJ781. 60 3e-15 2
(BJ354023) Dictyostelium discoideum cDNA clone:dda52c11, 3' ... 88 2e-12 1
(AZ154120) SP_0025_B1_F02_SP6E Strongylocentrotus purpuratus... 36 8e-05 3
(AC214008) MACACA MULATTA BAC clone CH250-327M16 from chromo... 58 6e-04 2
(GE049137) 454GmaGlobSeed791785 Soybean Seeds Containing Glo... 40 0.009 3
(AL591074) Human DNA sequence from clone XXyac-60D10 on chro... 42 0.015 2
(GD681757) 454GmaGlobSeed424406 Soybean Seeds Containing Glo... 40 0.021 3
(AC178829) Strongylocentrotus purpuratus clone R3-25L03, WOR... 38 0.089 3
(AC179488) Strongylocentrotus purpuratus clone R3-1035L11, W... 36 0.13 6
(EY481894) CBBP12023.fwd CBBP Hirudo medicinalis hermaphrodi... 42 0.15 2
(DH765767) Rattus norvegicus DNA, BAC clone: RNB1-348N21, 5'... 46 0.16 2
(AM444345) Vitis vinifera contig VV78X071067.5, whole genome... 40 0.23 2
(AC178305) Strongylocentrotus purpuratus clone R3-1114M14, W... 36 0.26 6
(BJ655209) Eptatretus burgeri leukocyte cDNA clone:hg136n01,... 38 0.27 2
(BJ649146) Eptatretus burgeri leukocyte cDNA clone:hg116c24,... 38 0.27 2
(BJ655780) Eptatretus burgeri leukocyte cDNA clone:hg138n21,... 38 0.27 2
(AX647437) Sequence 1629 from Patent EP1270724. 32 0.29 4
(BJ331818) Dictyostelium discoideum cDNA clone:dda36n06, 5' ... 44 0.33 3
(BJ335509) Dictyostelium discoideum cDNA clone:dda50b17, 5' ... 44 0.34 3
(CU464001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.35 1
(CO062799) est_k_brevis2388 Karenia brevis EST Library (L99-... 50 0.35 1
(CO062777) est_k_brevis2366 Karenia brevis EST Library (L99-... 50 0.35 1
(AY190952) Drosophila virilis clone DVIF01_45_G15 (D1418) ge... 36 0.39 4
(BJ391658) Dictyostelium discoideum cDNA clone:dds24a21, 5' ... 44 0.41 3
(BJ337078) Dictyostelium discoideum cDNA clone:dda56m04, 5' ... 44 0.41 3
(BJ365944) Dictyostelium discoideum cDNA clone:ddc37k03, 5' ... 44 0.41 3
(BJ333118) Dictyostelium discoideum cDNA clone:dda41c15, 5' ... 44 0.42 3
(DE931579) Macropus eugenii DNA, BAC clone: MEB1-122K09_F, 5... 42 0.43 2
(BJ397092) Dictyostelium discoideum cDNA clone:dds45d02, 5' ... 44 0.47 3
(BJ338934) Dictyostelium discoideum cDNA clone:dda63f13, 5' ... 44 0.47 3
(CQ341000) Sequence 15094 from Patent WO0157275. 34 0.49 3
(CQ303669) Sequence 14774 from Patent WO0186003. 34 0.49 3
(CQ266718) Sequence 14979 from Patent WO0157277. 34 0.49 3
(CQ228562) Sequence 15401 from Patent WO0157273. 34 0.49 3
(CQ205183) Sequence 7460 from Patent WO0157271. 34 0.49 3
(CQ180806) Sequence 12202 from Patent WO0157274. 34 0.49 3
(CQ145368) Sequence 15390 from Patent WO0157276. 34 0.49 3
(CQ106714) Sequence 15573 from Patent WO0157272. 34 0.49 3
(CQ075733) Sequence 11533 from Patent WO0157278. 34 0.49 3
(CQ056467) Sequence 7287 from Patent WO0157270. 34 0.49 3
(BJ334995) Dictyostelium discoideum cDNA clone:dda48e17, 5' ... 44 0.53 3
(AZ186540) SP_1007_A1_D09_SP6 Strongylocentrotus purpuratus,... 34 0.54 3
(AZ608659) 1M0433G04F Mouse 10kb plasmid UUGC1M library Mus ... 34 0.54 3
(GE571430) CCHT558.b1_L19.ab1 CCHT Niger Seed Guizotia abyss... 34 0.61 3
(AC179306) Strongylocentrotus purpuratus clone R3-53G23, WOR... 38 0.63 4
(AQ171567) HS_3163_B1_C02_MR CIT Approved Human Genomic Sper... 34 0.67 3
(FI003541) CHO_OF6894xm02r1.ab1 CHO_OF6 Nicotiana tabacum ge... 40 0.68 2
(DT760714) EST1194563 Aquilegia cDNA library Aquilegia formo... 38 0.69 2
(DE926834) Macropus eugenii DNA, BAC clone: MEB1-116B15_F, 5... 40 0.69 2
(FH379378) CHO_OF4728xh18r1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 0.70 2
(FH633246) CHO_OF4562xg02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 0.70 2
(AL513463) Neurospora crassa DNA linkage group V Cosmid cont... 48 0.73 3
(AC181020) Strongylocentrotus purpuratus clone R3-3056J23, W... 38 0.74 3
(AZ187659) SP_1009_B2_B05_T7A Strongylocentrotus purpuratus,... 34 0.76 3
(DT760715) EST1194564 Aquilegia cDNA library Aquilegia formo... 38 0.79 2
(EY375843) CAXA15852.fwd CAXA Helobdella robusta Subtracted ... 36 0.84 3
(Z95308) C.hyalina microsatellite marker DNA (id T8). 38 0.85 2
(DX822315) MUGQ_CH252P073J13T7_CP18_055 CHORI-252 Vervet Mon... 38 0.93 3
(AF046247) AF046247 Mus musculus 129Sv/Ev Mus musculus cDNA ... 38 1.2 2
(ER986607) CMHD-GT_436A1-3 GTL_R1_pNMDi4 Mus musculus cDNA c... 38 1.2 2
(ES713255) TFR6_13_E12_E001.g1 USDA-Tifton Peanut Library TF... 38 1.3 3
(AC177522) Strongylocentrotus purpuratus clone R3-9O23, WORK... 36 1.3 7
(AL031055) Human DNA sequence from clone RP1-28H20 on chromo... 48 1.4 1
(EJ301149) 1095390026245 Global-Ocean-Sampling_GS-27-01-01-1... 48 1.4 1
(EJ256833) 1095349014725 Global-Ocean-Sampling_GS-27-01-01-1... 48 1.4 1
(ED837729) Ynhw37588 HW-YUBAC Bos taurus genomic clone HW-YU... 42 1.5 3
(DR383963) 11441399 CERES-AN65 Arabidopsis thaliana cDNA clo... 34 1.5 3
(BZ185913) CH230-524J5.TJ CHORI-230 Segment 2 Rattus norvegi... 38 1.6 2
(DH600361) Rattus norvegicus DNA, BAC clone: RNB1-126A10, 5'... 42 1.6 2
(AC173359) Strongylocentrotus purpuratus clone R3-3074P23, W... 40 1.7 6
(AW334781) S37H5 AGS-1 Pneumocystis carinii cDNA 3', mRNA se... 38 1.7 2
(AC168636) Strongylocentrotus purpuratus clone R3-3018K5, WO... 38 1.7 5
(AZ152815) SP_0028_A2_E12_T7 Strongylocentrotus purpuratus, ... 38 1.7 2
(BH280702) CH230-97D22.TV CHORI-230 Segment 1 Rattus norvegi... 38 1.8 2
(G67741) D4Mon22 RPCI-23 mouse BAC clone 118E21 Mus musculus... 38 1.8 2
(BH324220) CH230-15I15.TJ CHORI-230 Segment 1 Rattus norvegi... 38 1.8 2
(AC176272) Strongylocentrotus purpuratus clone R3-3060C19, W... 36 1.8 4
(AW333531) S22H1 AGS-1 Pneumocystis carinii cDNA 3', mRNA se... 38 1.8 2
(BQ590313) E012842-024-019-N12-SP6 MPIZ-ADIS-024-storage roo... 38 1.8 2
(AW334297) S32H12 AGS-1 Pneumocystis carinii cDNA 3', mRNA s... 38 1.9 2
(AL742090) Danio rerio genomic clone DKEY-7J16, genomic surv... 38 1.9 2
(AW333385) S21A1 AGS-1 Pneumocystis carinii cDNA 3', mRNA se... 38 1.9 2
(FE139367) LV_HP_RA34N22f Litopenaeus vannamei hepatopancrea... 38 1.9 2
(AW332397) S7H10 AGS-1 Pneumocystis carinii cDNA 3', mRNA se... 38 2.0 2
(G93166) S209P6268FG7.T0 C3H/HeJ Mus musculus STS genomic, s... 38 2.0 2
(CE013424) tigr-gss-dog-17000321075157 Dog Library Canis lup... 40 2.1 2
(AZ777436) 2M0011P18R Mouse 10kb plasmid UUGC1M library Mus ... 38 2.1 2
(AZ188550) SP_1012_A2_H07_SP6E Strongylocentrotus purpuratus... 34 2.1 3
(FM115571) Rattus norvegicus EST, 5'-end sequence, clone etn... 38 2.1 2
(AJ854072) Ficus montana microsatellite DNA, clone WFM4-15. 38 2.2 2
(AW334886) S40D1 AGS-1 Pneumocystis carinii cDNA 3', mRNA se... 38 2.2 2
(DH686092) Rattus norvegicus DNA, BAC clone: RNB1-241C03, 3'... 38 2.3 2
(BH327522) CH230-174H21.TV CHORI-230 Segment 1 Rattus norveg... 38 2.3 2
(DH605467) Rattus norvegicus DNA, BAC clone: RNB1-132O13, 5'... 44 2.3 2
(BJ432587) Dictyostelium discoideum cDNA clone:ddv19j06, 3' ... 46 2.4 2
(DH701851) Rattus norvegicus DNA, BAC clone: RNB1-262F10, 3'... 44 2.4 2
(DH675054) Rattus norvegicus DNA, BAC clone: RNB1-226E07, 5'... 38 2.4 2
(DH678735) Rattus norvegicus DNA, BAC clone: RNB1-231D21, 5'... 38 2.4 2
(BJ377663) Dictyostelium discoideum cDNA clone:ddc25f09, 3' ... 46 2.4 2
(CK478732) AGENCOURT_17582620 NIH_MGC_232 Rattus norvegicus ... 38 2.5 2
(CR755485) Single read from one cDNA extremity clone GP0AAA1... 38 2.5 2
(DU669077) Bst001619 lambda03 Boechera stricta genomic clone... 38 2.6 2
(ER507947) 1093015429189 Global-Ocean-Sampling_GS-35-01-01-1... 38 2.7 2
(AP006262) Homo sapiens genomic DNA, 8q24.3, PCR product: KP... 42 2.8 4
(CC586704) CH240_384I7.T7 CHORI-240 Bos taurus genomic clone... 38 2.9 3
(AZ206083) SP_0104_B1_D10_T7A Strongylocentrotus purpuratus,... 38 2.9 2
(CT164674) Sus scrofa genomic clone CH242-125A23, genomic su... 36 3.0 3
(DH611327) Rattus norvegicus DNA, BAC clone: RNB1-140N08, 3'... 32 3.1 3
(CR754213) Single read from one cDNA extremity clone GP0AAA1... 38 3.1 2
(CQ328278) Sequence 2372 from Patent WO0157275. 34 3.2 3
(CQ291161) Sequence 2266 from Patent WO0186003. 34 3.2 3
(CQ254150) Sequence 2411 from Patent WO0157277. 34 3.2 3
(CQ215557) Sequence 2396 from Patent WO0157273. 34 3.2 3
(CQ200076) Sequence 2353 from Patent WO0157271. 34 3.2 3
(CQ170925) Sequence 2321 from Patent WO0157274. 34 3.2 3
(CQ132360) Sequence 2382 from Patent WO0157276. 34 3.2 3
(CQ093586) Sequence 2445 from Patent WO0157272. 34 3.2 3
(CQ066540) Sequence 2340 from Patent WO0157278. 34 3.2 3
(CQ051492) Sequence 2312 from Patent WO0157270. 34 3.2 3
(AC184508) Strongylocentrotus purpuratus clone R3-41C11, WOR... 34 3.5 6
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 3.6 14
(AC149977) Strongylocentrotus purpuratus clone R3-32A13, WOR... 34 3.6 4
(L43851) Pneumocystis carinii (clone JFSIg2) surface antigen... 38 3.6 2
(I13883) Sequence 4 from patent US 5442050. 38 3.6 2
(BH974275) odd84g07.g1 B.oleracea002 Brassica oleracea genom... 36 3.7 2
(EB324296) CNSN01-F-102315-501 Normalized CNS library (juven... 36 3.9 3
(AF152557) Pneumocystis carinii f. sp. carinii histidine and... 38 4.0 2
(AF466307) Dictyostelium discoideum ABC transporter AbcB4 (a... 38 4.1 3
(BT012284) Arabidopsis thaliana At3g26932 gene, complete cds. 34 4.1 3
(BJ369888) Dictyostelium discoideum cDNA clone:ddc52l07, 5' ... 32 4.3 3
(DD389766) CA125 Gene and Its Use for Diagnostic and Therape... 38 4.7 3
(CQ342489) Sequence 16583 from Patent WO0157275. 34 4.7 3
(CQ305288) Sequence 16393 from Patent WO0186003. 34 4.7 3
(CQ268254) Sequence 16515 from Patent WO0157277. 34 4.7 3
(CQ230106) Sequence 16945 from Patent WO0157273. 34 4.7 3
(CQ206688) Sequence 8965 from Patent WO0157271. 34 4.7 3
(CQ182292) Sequence 13688 from Patent WO0157274. 34 4.7 3
(CQ146881) Sequence 16903 from Patent WO0157276. 34 4.7 3
(CQ108252) Sequence 17111 from Patent WO0157272. 34 4.7 3
(CQ077251) Sequence 13051 from Patent WO0157278. 34 4.7 3
(CQ057943) Sequence 8763 from Patent WO0157270. 34 4.7 3
(G09820) human STS CHLC.GCT11H06.P16657 clone GCT11H06, sequ... 38 4.7 2
(AQ673094) HS_5333_B1_E02_SP6E RPCI-11 Human Male BAC Librar... 38 4.8 2
(AC168607) Strongylocentrotus purpuratus clone R3-3046K18, W... 34 4.9 6
(AZ496147) 1M0332I17F Mouse 10kb plasmid UUGC1M library Mus ... 42 5.1 2
(BH109957) RPCI-24-402C3.TV RPCI-24 Mus musculus genomic clo... 38 5.1 2
(BV388791) S244P65RD6.T0 AlaskaGrayWolf Canis lupus STS geno... 38 5.3 3
(BI919368) EST539303 potato tubers, dormant Solanum tuberosu... 42 5.5 2
(BX323835) Zebrafish DNA sequence from clone DKEYP-22F6 in l... 46 5.5 1
(BX005211) Zebrafish DNA sequence from clone CH211-128A7 in ... 46 5.5 1
(BX678769) Mouse DNA sequence from clone RP23-435C20 on chro... 46 5.5 1
(AC116875) Mus musculus chromosome 8, clone RP24-426B21, com... 46 5.5 1
(AL132979) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 46 5.5 1
(AX508049) Sequence 2744 from Patent WO0216655. 46 5.5 1
(AC159988) Bos taurus clone CH240-92I24, WORKING DRAFT SEQUE... 46 5.5 1
(AC100219) Mus musculus clone RP23-61L20, LOW-PASS SEQUENCE ... 46 5.5 1
(AL928996) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 46 5.5 1
(AC179365) Strongylocentrotus purpuratus clone R3-59I1, WORK... 46 5.5 1
(AC178470) Strongylocentrotus purpuratus clone R3-3034M3, WO... 46 5.5 1
(AC178444) Strongylocentrotus purpuratus clone R3-3041P24, W... 46 5.5 1
(AC176012) Strongylocentrotus purpuratus clone R3-3028C11, W... 46 5.5 1
(AC168840) Strongylocentrotus purpuratus clone R3-13B5, WORK... 46 5.5 1
(ET079542) QM0AAB8BE04FM1 CCER1 Citrus clementina genomic cl... 46 5.5 1
(ER469301) 1092963943036 Global-Ocean-Sampling_GS-35-01-01-1... 46 5.5 1
(ER452166) 1092963853950 Global-Ocean-Sampling_GS-35-01-01-1... 46 5.5 1
(ER314360) 1092344126334 Global-Ocean-Sampling_GS-34-01-01-1... 46 5.5 1
(EK214909) 1095460115447 Global-Ocean-Sampling_GS-31-01-01-1... 46 5.5 1
(EJ810609) 1093017487502 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.5 1
(EJ417204) 1093012193804 Global-Ocean-Sampling_GS-28-01-01-1... 46 5.5 1
(EJ326010) 1092963384575 Global-Ocean-Sampling_GS-28-01-01-1... 46 5.5 1
(EE491901) EX20LIB6_UP_023_B12_18MAR2004_094 Brassica napus ... 46 5.5 1
(DC323742) Homo sapiens cDNA, clone BRAWH3033157, 5' end, mR... 46 5.5 1
(CO500046) KH01003H06 KH01 Ipomoea batatas cDNA, mRNA sequence. 46 5.5 1
(C94194) Dictyostelium discoideum slug cDNA, clone SSK522. 46 5.5 1
(BJ435727) Dictyostelium discoideum cDNA clone:ddv28g03, 3' ... 46 5.5 1
(BJ435497) Dictyostelium discoideum cDNA clone:ddv27f09, 3' ... 46 5.5 1
(BJ433152) Dictyostelium discoideum cDNA clone:ddv20n21, 3' ... 46 5.5 1
(BJ357360) Dictyostelium discoideum cDNA clone:dda63f09, 3' ... 46 5.5 1
(BJ345687) Dictyostelium discoideum cDNA clone:dda28b15, 3' ... 46 5.5 1
(BJ343709) Dictyostelium discoideum cDNA clone:dda16m23, 3' ... 46 5.5 1
(BJ341452) Dictyostelium discoideum cDNA clone:dda6p15, 3' e... 46 5.5 1
(GD016093) CCHZ6701.b1 CCHZ Panicum virgatum abiotic and bio... 46 5.5 1
(EW721286) RS1B138JQ RS1(AR) Raphanus sativus var. oleiformi... 46 5.5 1
(Y10744) L.meyeri metY and metX genes. 46 5.5 1
(FE196946) B206A08 Antarctic fish Dissostichus mawsoni adult... 40 5.5 2
(CQ311760) Sequence 22865 from Patent WO0186003. 38 5.7 2
(CQ274773) Sequence 23034 from Patent WO0157277. 38 5.7 2
(CQ186510) Sequence 17906 from Patent WO0157274. 38 5.7 2
(CQ115076) Sequence 23935 from Patent WO0157272. 38 5.7 2
(CQ080632) Sequence 16432 from Patent WO0157278. 38 5.7 2
(CZ829603) OC__Ba0210P01.f OC__Ba Oryza coarctata genomic cl... 32 5.7 3
(DW405368) ES-N-S03-0263-W Penaeus monodon Eyestalk cDNA lib... 38 6.1 2
(DQ471454) Takifugu rubripes immunoglobulin light chain T2b ... 38 6.1 3
(EJ181630) 1092344127358 Global-Ocean-Sampling_GS-27-01-01-1... 38 6.4 2
(AC136253) Rattus norvegicus clone CH230-32F8, WORKING DRAFT... 38 6.4 5
(CT582945) Pinus pinaster bud EST. 40 6.4 2
(BJ396664) Dictyostelium discoideum cDNA clone:dds43b14, 5' ... 44 6.8 2
(CE170732) tigr-gss-dog-17000326655266 Dog Library Canis lup... 40 6.9 2
(BJ445597) Dictyostelium discoideum cDNA clone:ddv60b03, 3' ... 32 6.9 3
(DQ307242) Penaeus monodon microsatellite 10CG sequence. 36 7.0 2
(CQ300108) Sequence 11213 from Patent WO0186003. 38 7.1 2
(CQ263075) Sequence 11336 from Patent WO0157277. 38 7.1 2
(CQ177361) Sequence 8757 from Patent WO0157274. 38 7.1 2
(CQ102890) Sequence 11749 from Patent WO0157272. 38 7.1 2
(CQ072197) Sequence 7997 from Patent WO0157278. 38 7.1 2
(FG999871) GLPAD37TR JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 40 7.2 2
(FD716105) CAAA2012.rev CAAA Petromyzon marinus Petromyzon m... 38 7.2 2
(FE200565) B332G05 Antarctic fish Dissostichus mawsoni adult... 40 7.2 2
(EF715437) Mus musculus C57BL/6N IST10065A4BBR1 gene trap em... 38 7.2 2
(DH626805) Rattus norvegicus DNA, BAC clone: RNB1-161J12, 3'... 36 7.4 2
(BJ406711) Dictyostelium discoideum cDNA clone:dds36n05, 3' ... 32 7.5 3
(AK222128) Arabidopsis thaliana mRNA for putative protein, c... 34 7.5 3
(FG999870) GLPAD37TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 40 7.6 2
(EY364270) CAWZ9239.fwd CAWZ Helobdella robusta Primary Late... 36 7.7 2
(AY753023) Penaeus monodon clone t2801 microsatellite sequence. 38 7.7 2
(EI724921) 2B421021J02TF BAC library from breast tumor sampl... 38 7.8 2
(CT975338) Equus caballus GSS, BAC clone CH241-57G12, SP6 en... 38 8.1 2
(DH633832) Rattus norvegicus DNA, BAC clone: RNB1-170P01, 3'... 38 8.2 2
(DH658366) Rattus norvegicus DNA, BAC clone: RNB1-203P01, 5'... 36 8.3 2
(CR343587) mte1-76F24RM1 BAC end, cultivar Jemalong A17 of M... 36 8.4 3
(DH661116) Rattus norvegicus DNA, BAC clone: RNB1-207J21, 5'... 36 8.4 2
(DH830548) Rattus norvegicus DNA, BAC clone: RNB1-437N09, 5'... 38 8.4 2
(EY940491) RS2E747TF RS2(RS) Raphanus sativus cDNA 5', mRNA ... 38 8.5 2
(DH724339) Rattus norvegicus DNA, BAC clone: RNB1-292M13, 5'... 36 8.6 2
(AL247355) Tetraodon nigroviridis genome survey sequence PUC... 38 8.6 2
(EY324681) CAWY10428.fwd CAWY Helobdella robusta Subtracted ... 42 8.6 2
(BG350965) 099C03 Mature tuber lambda ZAP Solanum tuberosum ... 42 8.7 2
(DY973807) CLSM7486.b1_L23.ab1 CLS(LMS) lettuce sativa Lactu... 38 8.7 2
(DH642268) Rattus norvegicus DNA, BAC clone: RNB1-182F05, 3'... 36 8.8 2
(DR918163) EST1109702 Aquilegia cDNA library Aquilegia formo... 36 8.8 2
(AL021508) Caenorhabditis elegans YAC Y70C5B. 38 8.8 2
(AC177417) Strongylocentrotus purpuratus clone R3-54I12, WOR... 34 8.9 4
(AC180111) Strongylocentrotus purpuratus clone R3-4007H13, W... 34 9.0 7
(BZ164233) CH230-246O13.TJB CHORI-230 Segment 2 Rattus norve... 34 9.0 3
(CK364347) AGENCOURT_17153085 NIH_MGC_231 Rattus norvegicus ... 38 9.0 2
(FE257565) CAPH6692.fwd CAPH Naegleria gruberi amoeba stage ... 42 9.0 2
(DX448729) BE2017_C23_R IASMA L2 HindIII BAC library Vitis v... 38 9.2 2
(DH527139) Rattus norvegicus DNA, BAC clone: RNB1-026K12, 5'... 36 9.2 2
(EY365938) CAXA10471.rev CAXA Helobdella robusta Subtracted ... 42 9.4 2
(CK280001) EST726079 potato abiotic stress cDNA library Sola... 42 9.5 2
(AC124583) Mus musculus BAC clone RP23-123P18 from chromosom... 34 9.7 2
(CK255455) EST739092 potato callus cDNA library, normalized ... 42 9.8 2
(AC181040) Strongylocentrotus purpuratus clone R3-3029B16, W... 36 9.8 6
(AC145307) Mus musculus BAC clone RP24-400C6 from chromosome... 34 9.8 2
(CK244366) EST728003 potato callus cDNA library, normalized ... 42 9.9 2
(FE246086) CAPG9233.fwd CAPG Naegleria gruberi amoeba stage ... 42 9.9 2
(CK244577) EST728214 potato callus cDNA library, normalized ... 42 9.9 2
(DQ384475) Homo sapiens clone fa0509 genomic sequence. 34 10.0 6
>(BJ370512) Dictyostelium discoideum cDNA clone:ddc54k09, 5' end,
single read.
Length = 470
Score = 930 bits (469), Expect = 0.0
Identities = 469/469 (100%)
Strand = Plus / Plus
Query: 1 catttttatttggcacgtcttcaacaacttcaaatccagcacaaactacaactccaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catttttatttggcacgtcttcaacaacttcaaatccagcacaaactacaactccaacca 60
Query: 61 cttctacacctacgccctcctctagtatctttggtcaaccaccaactagtagtagtgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttctacacctacgccctcctctagtatctttggtcaaccaccaactagtagtagtgttt 120
Query: 121 tcggttctaaaccaaccgtttttggttcagcatcatcaaatagttcaagtgttttcggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcggttctaaaccaaccgtttttggttcagcatcatcaaatagttcaagtgttttcggtc 180
Query: 181 aaactacaacaaaaccatcaactggttcaagtgtttttggccaaaattcatccagtgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaactacaacaaaaccatcaactggttcaagtgtttttggccaaaattcatccagtgttt 240
Query: 241 ttggtcaaactactacaccatcaagtggaacaggtgtttttggccaaaattcatccagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttggtcaaactactacaccatcaagtggaacaggtgtttttggccaaaattcatccagtg 300
Query: 301 tttttggtcaaacttccacgggtacaggtgtttttggccaaaattcatccagcatttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttttggtcaaacttccacgggtacaggtgtttttggccaaaattcatccagcatttttg 360
Query: 361 gtcaatcaaatggggtaatgggttcgacatcaactccatcctcaacaagtatttttggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcaatcaaatggggtaatgggttcgacatcaactccatcctcaacaagtatttttggtg 420
Query: 421 tcaagaaatccgatgaacttacaaagaagactgaagaatctgtaaagaa 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaagaaatccgatgaacttacaaagaagactgaagaatctgtaaagaa 469
Score = 83.8 bits (42), Expect(4) = 3e-33
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 257 accatcaagtggaacaggtgtttttggccaaaattcatccagtgtttttggtcaaact 314
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 accatcaactggttcaagtgtttttggccaaaattcatccagtgtttttggtcaaact 251
Score = 83.8 bits (42), Expect(4) = 3e-33
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 194 accatcaactggttcaagtgtttttggccaaaattcatccagtgtttttggtcaaact 251
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 accatcaagtggaacaggtgtttttggccaaaattcatccagtgtttttggtcaaact 314
Score = 67.9 bits (34), Expect(4) = 3e-33
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 324 acaggtgtttttggccaaaattcatccagcatttttggtcaa 365
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 270 acaggtgtttttggccaaaattcatccagtgtttttggtcaa 311
Score = 67.9 bits (34), Expect(4) = 3e-33
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 270 acaggtgtttttggccaaaattcatccagtgtttttggtcaa 311
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 acaggtgtttttggccaaaattcatccagcatttttggtcaa 365
Score = 32.2 bits (16), Expect(4) = 3e-33
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 234 agtgtttttggtcaaactac 253
|||||||| |||||||||||
Sbjct: 168 agtgttttcggtcaaactac 187
Score = 32.2 bits (16), Expect(4) = 3e-33
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 168 agtgttttcggtcaaactac 187
|||||||| |||||||||||
Sbjct: 234 agtgtttttggtcaaactac 253
Score = 28.2 bits (14), Expect(4) = 3e-33
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 196 catcaactggttcaagtgtttt 217
|||||| | |||||||||||||
Sbjct: 154 catcaaatagttcaagtgtttt 175
Score = 28.2 bits (14), Expect(4) = 3e-33
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 154 catcaaatagttcaagtgtttt 175
|||||| | |||||||||||||
Sbjct: 196 catcaactggttcaagtgtttt 217
Score = 60.0 bits (30), Expect = 4e-04
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 328 gtgtttttggccaaaattcatccagcatttttggtcaa 365
||||||||||||||||||||||||| |||||||||||
Sbjct: 211 gtgtttttggccaaaattcatccagtgtttttggtcaa 248
Score = 60.0 bits (30), Expect = 4e-04
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 211 gtgtttttggccaaaattcatccagtgtttttggtcaa 248
||||||||||||||||||||||||| |||||||||||
Sbjct: 328 gtgtttttggccaaaattcatccagcatttttggtcaa 365
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,449,115,329
Number of extensions: 91327569
Number of successful extensions: 8665552
Number of sequences better than 10.0: 261
Length of query: 2161
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 2137
Effective length of database: 96,409,374,237
Effective search space: 206026832744469
Effective search space used: 206026832744469
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 7.19 |
| Homology vs Protein |
Query= Contig-U15936-1 (Contig-U15936-1Q) /CSM_Contig/Contig-U15936-1Q.Seq.d
(2161 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AP008218_337(AP008218|pid:none) Oryza sativa (japonica cultivar-... 66 5e-09
BC142901_1(BC142901|pid:none) Danio rerio cDNA clone IMAGE:81281... 64 2e-08
CU928178_19(CU928178|pid:none) Zygosaccharomyces rouxii strain C... 63 4e-08
AC116963_46(AC116963|pid:none) Dictyostelium discoideum chromoso... 62 7e-08
AK226964_1(AK226964|pid:none) Arabidopsis thaliana mRNA for hypo... 62 9e-08
AP008218_336(AP008218|pid:none) Oryza sativa (japonica cultivar-... 61 2e-07
AE016814_291(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 59 6e-07
CR940348_644(CR940348|pid:none) Theileria annulata strain Ankara... 59 6e-07
Z15036_1(Z15036|pid:none) S.cerevisiae gene for nuclear pore com... 59 7e-07
S62453(S62453)hypothetical protein SPAC22G7.09c - fission yeast ... 59 7e-07
(Q9UTK4) RecName: Full=Nucleoporin nup189; AltName: Full=Nuclear... 58 1e-06
(Q02629) RecName: Full=Nucleoporin NUP100/NSP100; AltName: Full=... 58 1e-06
CR940353_669(CR940353|pid:none) Theileria annulata strain Ankara... 58 1e-06
AB326233_1(AB326233|pid:none) Daucus carota FEN1 mRNA for nucleo... 57 2e-06
CR382126_1138(CR382126|pid:none) Kluyveromyces lactis strain NRR... 57 2e-06
AE016815_310(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 57 3e-06
AK316435_1(AK316435|pid:none) Homo sapiens cDNA, FLJ79334 comple... 57 4e-06
BC105998_1(BC105998|pid:none) Homo sapiens nucleoporin 214kDa, m... 57 4e-06
AB159230_1(AB159230|pid:none) Homo sapiens KIAA0023 mRNA for KIA... 57 4e-06
AL157938_7(AL157938|pid:none) Human DNA sequence from clone RP11... 57 4e-06
AK302676_1(AK302676|pid:none) Homo sapiens cDNA FLJ52369 complet... 57 4e-06
AK316417_1(AK316417|pid:none) Homo sapiens cDNA, FLJ79316 comple... 57 4e-06
FN392319_540(FN392319|pid:none) Pichia pastoris GS115 chromosome... 56 5e-06
BC045620_1(BC045620|pid:none) Homo sapiens nucleoporin 214kDa, m... 55 8e-06
CU928166_162(CU928166|pid:none) Kluyveromyces thermotolerans str... 55 8e-06
(Q54EQ8) RecName: Full=Nuclear pore complex protein Nup98-Nup96;... 55 1e-05
BC039282_1(BC039282|pid:none) Mus musculus nucleoporin 214, mRNA... 55 1e-05
(Q80U93) RecName: Full=Nuclear pore complex protein Nup214; AltN... 55 1e-05
AC009317_23(AC009317|pid:none) Genomic sequence for Arabidopsis ... 54 2e-05
CU928173_66(CU928173|pid:none) Zygosaccharomyces rouxii strain C... 54 2e-05
CP001326_241(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 54 2e-05
AC116957_76(AC116957|pid:none) Dictyostelium discoideum chromoso... 54 3e-05
(Q555D2) RecName: Full=Uncharacterized protein DDB_G0274915; 54 3e-05
CR382132_1173(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 53 4e-05
CR382127_657(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 53 5e-05
AJ243889_1(AJ243889|pid:none) Xenopus laevis mRNA for nucleopori... 53 5e-05
CP000497_85(CP000497|pid:none) Pichia stipitis CBS 6054 chromoso... 52 7e-05
FM992690_438(FM992690|pid:none) Candida dubliniensis CD36 chromo... 52 7e-05
CP001576_193(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 52 7e-05
AE014297_3526(AE014297|pid:none) Drosophila melanogaster chromos... 52 9e-05
CP000496_815(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 52 9e-05
CR380958_209(CR380958|pid:none) Candida glabrata strain CBS138 c... 51 2e-04
(P49687) RecName: Full=Nucleoporin NUP145; EC=3.4.21.-;... 51 2e-04
AY250799_1(AY250799|pid:none) Drosophila simulans strain Lhr nuc... 51 2e-04
CU928175_176(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 51 2e-04
FM992691_457(FM992691|pid:none) Candida dubliniensis CD36 chromo... 51 2e-04
CR382135_635(CR382135|pid:none) Debaryomyces hansenii strain CBS... 50 3e-04
CR382122_455(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 50 3e-04
BC050911_1(BC050911|pid:none) Mus musculus nucleoporin 98, mRNA ... 50 4e-04
BC137975_1(BC137975|pid:none) Mus musculus nucleoporin 98, mRNA ... 50 4e-04
AK164402_1(AK164402|pid:none) Mus musculus 12 days embryo eyebal... 50 4e-04
CR380952_250(CR380952|pid:none) Candida glabrata strain CBS138 c... 50 4e-04
BC145071_1(BC145071|pid:none) Mus musculus nucleoporin 98, mRNA ... 50 4e-04
AK164743_1(AK164743|pid:none) Mus musculus 10 days lactation, ad... 50 4e-04
Y15794_1(Y15794|pid:none) Theileria annulata mRNA for spm1 prote... 49 6e-04
AP007155_966(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 49 6e-04
CR382126_957(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 49 6e-04
AE016820_255(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 49 8e-04
AC013428_27(AC013428|pid:none) Arabidopsis thaliana chromosome I... 49 0.001
FM992693_278(FM992693|pid:none) Candida dubliniensis CD36 chromo... 49 0.001
AK146491_1(AK146491|pid:none) Mus musculus 17 days embryo heart ... 49 0.001
AY094967_1(AY094967|pid:none) Drosophila melanogaster SD07675 fu... 49 0.001
AC011560_6(AC011560|pid:none) Arabidopsis thaliana chromosome 3 ... 49 0.001
BC077959_1(BC077959|pid:none) Xenopus laevis Nup98 protein, mRNA... 49 0.001
FN357349_8(FN357349|pid:none) Schistosoma mansoni genome sequenc... 48 0.001
CP000360_1910(CP000360|pid:none) Acidobacteria bacterium Ellin34... 48 0.002
AM438976_1(AM438976|pid:none) Vitis vinifera contig VV78X257483.... 48 0.002
AB168847_1(AB168847|pid:none) Macaca fascicularis testis cDNA, c... 48 0.002
CR380958_250(CR380958|pid:none) Candida glabrata strain CBS138 c... 48 0.002
(Q9Y6J4) RecName: Full=Nuclear pore complex protein Nup98-Nup96;... 47 0.002
BC041136_1(BC041136|pid:none) Homo sapiens nucleoporin 98kDa, mR... 47 0.002
AF231130_1(AF231130|pid:none) Homo sapiens NUP196 nucleoporin mR... 47 0.002
U41815_1(U41815|pid:none) Human nucleoporin 98 (NUP98) mRNA, com... 47 0.002
AF071076_1(AF071076|pid:none) Homo sapiens cell-line HeLa Nup98-... 47 0.002
AY223678_1(AY223678|pid:none) Emericella nidulans SONB gene, com... 47 0.002
AK301512_1(AK301512|pid:none) Homo sapiens cDNA FLJ53414 complet... 47 0.002
AB040538_1(AB040538|pid:none) Homo sapiens NUP98 mRNA for nucleo... 47 0.002
EF071958_1(EF071958|pid:none) Homo sapiens NUP98/PHF23 fusion pr... 47 0.002
T29008(T29008)hypothetical protein ZK328.5b - Caenorhabditis ele... 47 0.002
AB038155_1(AB038155|pid:none) Homo sapiens mRNA for NUP98-HOXD13... 47 0.002
CP000387_1885(CP000387|pid:none) Streptococcus sanguinis SK36, c... 47 0.003
AK292548_1(AK292548|pid:none) Homo sapiens cDNA FLJ78766 complet... 47 0.003
FN392322_366(FN392322|pid:none) Pichia pastoris GS115 chromosome... 47 0.003
BC058869_1(BC058869|pid:none) Danio rerio zgc:63593, mRNA (cDNA ... 47 0.004
AM270079_5(AM270079|pid:none) Aspergillus niger contig An04c0180... 46 0.005
X83099_1(X83099|pid:none) S.cerevisiae DNA for ORFs from chromos... 46 0.005
AY181249_4(AY181249|pid:none) Candida glabrata mating pheromone ... 46 0.005
CP000909_292(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 46 0.005
BC008794_1(BC008794|pid:none) Homo sapiens POM121 membrane glyco... 46 0.005
BX897677_4(BX897677|pid:none) Neurospora crassa DNA linkage grou... 46 0.005
CP001364_315(CP001364|pid:none) Chloroflexus sp. Y-400-fl, compl... 46 0.005
BC001518_1(BC001518|pid:none) Homo sapiens POM121 membrane glyco... 46 0.005
Z72905_1(Z72905|pid:none) S.cerevisiae chromosome VII reading fr... 46 0.005
(P48837) RecName: Full=Nucleoporin NUP57; AltName: Full=Nuclear ... 46 0.005
(Q9Y4S7) RecName: Full=Nuclear envelope pore membrane protein PO... 46 0.005
CR382130_639(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 46 0.006
FM992690_603(FM992690|pid:none) Candida dubliniensis CD36 chromo... 46 0.006
CU633458_8(CU633458|pid:none) Podospora anserina genomic DNA chr... 46 0.006
AL683874_14(AL683874|pid:none) Aspergillus fumigatus BAC AfA14E5. 46 0.006
FM992689_302(FM992689|pid:none) Candida dubliniensis CD36 chromo... 45 0.008
BC082443_1(BC082443|pid:none) Xenopus laevis nucleoporin Nup153,... 45 0.008
AF045567_1(AF045567|pid:none) Xenopus laevis nucleoporin Nup153 ... 45 0.008
(P54736) RecName: Full=Serine/threonine-protein kinase pkn2; ... 45 0.011
AM910989_23(AM910989|pid:none) Plasmodium knowlesi strain H chro... 45 0.014
AY662674_1(AY662674|pid:none) Homo sapiens predicted NUP98/PRRX2... 45 0.014
AP007171_422(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 45 0.014
FM992688_1238(FM992688|pid:none) Candida dubliniensis CD36 chrom... 44 0.018
AB110101_1(AB110101|pid:none) Saccharomyces cerevisiae K701-AWA1... 44 0.024
AP007155_388(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 44 0.024
CR954201_342(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 44 0.024
AL032643_3(AL032643|pid:none) Caenorhabditis elegans YAC Y54E5A,... 44 0.024
CR382139_571(CR382139|pid:none) Debaryomyces hansenii strain CBS... 44 0.032
CP000360_4084(CP000360|pid:none) Acidobacteria bacterium Ellin34... 44 0.032
CP000581_385(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 44 0.032
AM270136_10(AM270136|pid:none) Aspergillus niger contig An07c019... 44 0.032
GN101431_1(GN101431|pid:none) Sequence 6212 from Patent WO200903... 44 0.032
CR382135_615(CR382135|pid:none) Debaryomyces hansenii strain CBS... 44 0.032
GN101451_1(GN101451|pid:none) Sequence 6232 from Patent WO200903... 44 0.032
(Q05164) RecName: Full=Haze protective factor 1; Flags: Precurso... 43 0.041
AC008047_10(AC008047|pid:none) Genomic sequence for Arabidopsis ... 43 0.041
FM992695_227(FM992695|pid:none) Candida dubliniensis CD36 chromo... 43 0.041
CT005266_312(CT005266|pid:none) Leishmania major strain Friedlin... 43 0.054
EU962741_1(EU962741|pid:none) Zea mays clone 245125 hypothetical... 43 0.054
CP000496_182(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 43 0.054
T23422(T23422) hypothetical protein K07F5.13b - Caenorhabditis e... 43 0.054
AE013599_3902(AE013599|pid:none) Drosophila melanogaster chromos... 43 0.054
CP001350_225(CP001350|pid:none) Methylobacterium nodulans ORS 20... 43 0.054
AM910993_65(AM910993|pid:none) Plasmodium knowlesi strain H chro... 42 0.070
AF077538_1(AF077538|pid:none) Caenorhabditis elegans fosmid H02F... 42 0.070
AM114193_381(AM114193|pid:none) Uncultured methanogenic archaeon... 42 0.070
GN101445_1(GN101445|pid:none) Sequence 6226 from Patent WO200903... 42 0.070
(Q7Z5P9) RecName: Full=Mucin-19; Short=MUC-19; Flags: P... 42 0.070
CU928174_185(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 42 0.092
AE017350_100(AE017350|pid:none) Cryptococcus neoformans var. neo... 42 0.092
AM920435_437(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 42 0.092
CP000360_352(CP000360|pid:none) Acidobacteria bacterium Ellin345... 42 0.092
(O42963) RecName: Full=Nucleoporin nup44; AltName: Full=Nuclear ... 42 0.12
GN101433_1(GN101433|pid:none) Sequence 6214 from Patent WO200903... 42 0.12
(Q02199) RecName: Full=Nucleoporin NUP49/NSP49; AltName: Full=Nu... 42 0.12
AM910991_329(AM910991|pid:none) Plasmodium knowlesi strain H chr... 41 0.16
M37160_1(M37160|pid:none) Saccharomyces cerevisiae nucleoskeleta... 41 0.16
T18883(T18883) hypothetical protein C03D6.4 - Caenorhabditis ele... 41 0.16
AM270181_6(AM270181|pid:none) Aspergillus niger contig An08c0260... 41 0.16
(Q5D862) RecName: Full=Filaggrin-2; Short=FLG-2; AltNam... 41 0.16
AE014134_2213(AE014134|pid:none) Drosophila melanogaster chromos... 41 0.16
CP000053_1290(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 41 0.16
CU928171_397(CU928171|pid:none) Kluyveromyces thermotolerans str... 41 0.16
CP000360_190(CP000360|pid:none) Acidobacteria bacterium Ellin345... 41 0.20
CR940353_287(CR940353|pid:none) Theileria annulata strain Ankara... 41 0.20
CU928175_137(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 41 0.20
AB170123_1(AB170123|pid:none) Macaca fascicularis brain cDNA clo... 41 0.20
(Q8K3Z9) RecName: Full=Nuclear envelope pore membrane protein PO... 41 0.20
(Q8T2I5) RecName: Full=Probable GH family 25 lysozyme 3; ... 41 0.20
CP000360_2737(CP000360|pid:none) Acidobacteria bacterium Ellin34... 40 0.27
CR382127_683(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 40 0.27
T02178(T02178;A84911)hypothetical protein At2g47090 [imported] -... 40 0.27
T22974(T22974) hypothetical protein F59A2.1 - Caenorhabditis ele... 40 0.27
AM270168_47(AM270168|pid:none) Aspergillus niger contig An08c013... 40 0.27
AC006607_3(AC006607|pid:none) Caenorhabditis elegans cosmid C09E... 40 0.27
CU928170_593(CU928170|pid:none) Kluyveromyces thermotolerans str... 40 0.27
BC052965_1(BC052965|pid:none) Homo sapiens nucleoporin 153kDa, m... 40 0.35
FM992688_957(FM992688|pid:none) Candida dubliniensis CD36 chromo... 40 0.35
AF331848_1(AF331848|pid:none) Mus musculus trophinin gene, compl... 40 0.35
T32759(T32759)hypothetical protein T12F5.3 - Caenorhabditis eleg... 40 0.35
AB210024_1(AB210024|pid:none) Homo sapiens mRNA for NUP153 varia... 40 0.35
(O76743) RecName: Full=ATP-dependent RNA helicase glh-4; ... 40 0.35
S42718(S42718;S37477) nuclear pore complex protein nup153 - huma... 40 0.35
BX538351_68(BX538351|pid:none) Cryptosporidium parvum chromosome... 40 0.35
AM920436_2059(AM920436|pid:none) Penicillium chrysogenum Wiscons... 40 0.35
AF079508_1(AF079508|pid:none) Caenorhabditis elegans germline RN... 40 0.35
AB384675_1(AB384675|pid:none) Synthetic construct DNA, clone: pF... 40 0.35
D43756_1(D43756|pid:none) Canis lupus familiaris gene for fibrin... 40 0.35
AB032477_1(AB032477|pid:none) Mus musculus trophinin/magphinin m... 40 0.35
AK122449_1(AK122449|pid:none) Mus musculus mRNA for mKIAA1114 pr... 40 0.35
AF241245_1(AF241245|pid:none) Mus musculus magphinin-alpha (Tro)... 40 0.35
AB036783_1(AB036783|pid:none) Mus musculus mRNA for trophinin-2,... 40 0.35
AK293305_1(AK293305|pid:none) Homo sapiens cDNA FLJ56876 complet... 40 0.35
AC117075_92(AC117075|pid:none) Dictyostelium discoideum chromoso... 40 0.35
CR855331_5(CR855331|pid:none) Zebrafish DNA sequence from clone ... 40 0.35
AF319977_1(AF319977|pid:none) Mus musculus mage-d3 mRNA, complet... 40 0.35
(A8CG34) RecName: Full=Nuclear envelope pore membrane protein PO... 40 0.35
AK302946_1(AK302946|pid:none) Homo sapiens cDNA FLJ55656 complet... 40 0.46
AP009493_4556(AP009493|pid:none) Streptomyces griseus subsp. gri... 40 0.46
AY212268_1(AY212268|pid:none) Dictyostelium discoideum component... 40 0.46
CU640366_202(CU640366|pid:none) Podospora anserina genomic DNA c... 40 0.46
CR382137_894(CR382137|pid:none) Debaryomyces hansenii strain CBS... 40 0.46
CP000360_536(CP000360|pid:none) Acidobacteria bacterium Ellin345... 40 0.46
CP000497_267(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 39 0.59
BC052173_1(BC052173|pid:none) Mus musculus nucleoporin 153, mRNA... 39 0.59
CP000360_3464(CP000360|pid:none) Acidobacteria bacterium Ellin34... 39 0.59
AE016817_153(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 39 0.59
BC046468_1(BC046468|pid:none) Mus musculus nucleoporin 153, mRNA... 39 0.59
CP000934_1259(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 39 0.78
EU414028_1(EU414028|pid:none) Saccharomyces cerevisiae strain wi... 39 0.78
(O74851) RecName: Full=Protein adg3; Flags: Precursor; &AL03190... 39 0.78
AL031543_9(AL031543|pid:none) S.pombe chromosome III cosmid c74. 39 0.78
CP000570_2007(CP000570|pid:none) Burkholderia pseudomallei 668 c... 39 0.78
CP000010_873(CP000010|pid:none) Burkholderia mallei ATCC 23344 c... 39 0.78
BX571965_1647(BX571965|pid:none) Burkholderia pseudomallei strai... 39 0.78
CP000498_318(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 39 0.78
(A6NF01) RecName: Full=Putative nuclear envelope pore membrane p... 39 0.78
CP000248_423(CP000248|pid:none) Novosphingobium aromaticivorans ... 39 0.78
GN101447_1(GN101447|pid:none) Sequence 6228 from Patent WO200903... 39 0.78
AY060443_1(AY060443|pid:none) Drosophila melanogaster LD47460 fu... 39 1.0
CP000360_1905(CP000360|pid:none) Acidobacteria bacterium Ellin34... 39 1.0
FN392321_75(FN392321|pid:none) Pichia pastoris GS115 chromosome ... 39 1.0
T34369(T34369)hypothetical protein T19D12.1 - Caenorhabditis ele... 39 1.0
D89269_1(D89269|pid:none) Schizosaccharomyces pombe mRNA, partia... 39 1.0
AE014298_2536(AE014298|pid:none) Drosophila melanogaster chromos... 39 1.0
T28125(T28125)hypothetical protein ZK945.9 - Caenorhabditis eleg... 39 1.0
CP000500_679(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 39 1.0
AJ514404_1(AJ514404|pid:none) Mycoplasma conjunctivae lppS gene ... 39 1.0
CP000113_6570(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 39 1.0
CP001408_2128(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 39 1.0
BT065645_1(BT065645|pid:none) Zea mays full-length cDNA clone ZM... 39 1.0
(Q09624) RecName: Full=Location of vulva defective 1; AltName: F... 39 1.0
AY051999_1(AY051999|pid:none) Drosophila melanogaster LD46585 fu... 39 1.0
AC084296_19(AC084296|pid:none) Oryza sativa chromosome 3 BAC OSJ... 38 1.3
CU928178_106(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 38 1.3
AF023459_1(AF023459|pid:none) Haliotis rufescens lustrin A mRNA,... 38 1.3
CP000282_3860(CP000282|pid:none) Saccharophagus degradans 2-40, ... 38 1.3
AY085640_1(AY085640|pid:none) Arabidopsis thaliana clone 16467 m... 38 1.3
CU633438_849(CU633438|pid:none) Podospora anserina genomic DNA c... 38 1.3
CP000152_440(CP000152|pid:none) Burkholderia sp. 383 chromosome ... 38 1.3
AM270362_8(AM270362|pid:none) Aspergillus niger contig An16c0100... 38 1.3
EU966473_1(EU966473|pid:none) Zea mays clone 294726 meiosis 5 mR... 38 1.7
AB098196_1(AB098196|pid:none) Codonosiga gracilis CgPTK-h mRNA f... 38 1.7
(O94317) RecName: Full=Uncharacterized serine-rich protein C215.... 38 1.7
AE009442_494(AE009442|pid:none) Xylella fastidiosa Temecula1, co... 38 1.7
CR382127_91(CR382127|pid:none) Yarrowia lipolytica strain CLIB12... 38 1.7
AF071213_2(AF071213|pid:none) Homo sapiens FUS/TLS protein gene,... 38 1.7
CP000854_1618(CP000854|pid:none) Mycobacterium marinum M, comple... 38 1.7
AB308054_1(AB308054|pid:none) Phanerochaete chrysosporium xgh74B... 38 1.7
AY891851_1(AY891851|pid:none) Synthetic construct Homo sapiens c... 37 2.3
CR382126_153(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 37 2.3
(P35637) RecName: Full=RNA-binding protein FUS; AltName: Full=On... 37 2.3
AK290936_1(AK290936|pid:none) Homo sapiens cDNA FLJ78268 complet... 37 2.3
BX248335_72(BX248335|pid:none) Mycobacterium bovis subsp. bovis ... 37 2.3
AJ720073_1(AJ720073|pid:none) Gallus gallus mRNA for hypothetica... 37 2.3
CR382122_602(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 37 2.3
(P53832) RecName: Full=Cell wall integrity and stress response c... 37 2.3
AL590442_46(AL590442|pid:none) chromosome II of strain GB-M1 of ... 37 2.3
AK299129_1(AK299129|pid:none) Homo sapiens cDNA FLJ58049 complet... 37 2.3
CP000611_364(CP000611|pid:none) Mycobacterium tuberculosis H37Ra... 37 2.3
S33798(S33798;S36158) FUS/CHOP mutant fusion protein - human &S... 37 2.3
CP000282_2268(CP000282|pid:none) Saccharophagus degradans 2-40, ... 37 2.3
CP000079_38(CP000079|pid:none) Leishmania major strain Friedlin ... 37 2.3
AM408590_394(AM408590|pid:none) Mycobacterium bovis BCG Pasteur ... 37 2.3
AM920427_1645(AM920427|pid:none) Penicillium chrysogenum Wiscons... 37 2.3
AF214067_1(AF214067|pid:none) Plasmodium falciparum serine-repea... 37 3.0
(P87179) RecName: Full=Cell wall integrity and stress response c... 37 3.0
CP001614_2450(CP001614|pid:none) Teredinibacter turnerae T7901, ... 37 3.0
AL033545_11(AL033545|pid:none) Arabidopsis thaliana DNA chromoso... 37 3.0
Z95620_16(Z95620|pid:none) S.pombe chromosome II cosmid c3D6. 37 3.0
CU928178_107(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 37 3.0
CP001614_375(CP001614|pid:none) Teredinibacter turnerae T7901, c... 37 3.0
T40167(T40167;T40374)hypothetical protein SPBC30B4.01c - fission... 37 3.0
CP000419_286(CP000419|pid:none) Streptococcus thermophilus LMD-9... 37 3.0
CP000023_331(CP000023|pid:none) Streptococcus thermophilus LMG 1... 37 3.0
(Q5SSG8) RecName: Full=Mucin-21; Short=MUC-21; AltName:... 37 3.9
AK303409_1(AK303409|pid:none) Homo sapiens cDNA FLJ52820 complet... 37 3.9
AK092426_1(AK092426|pid:none) Homo sapiens cDNA FLJ35107 fis, cl... 37 3.9
CP001027_408(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 37 3.9
CP000356_718(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ... 37 3.9
AK299471_1(AK299471|pid:none) Homo sapiens cDNA FLJ50027 complet... 37 3.9
AB383875_1(AB383875|pid:none) Synthetic construct DNA, clone: pF... 37 3.9
AK123955_1(AK123955|pid:none) Homo sapiens cDNA FLJ41961 fis, cl... 37 3.9
BC158204_1(BC158204|pid:none) Danio rerio si:dkey-208k22.3, mRNA... 37 3.9
AB168774_1(AB168774|pid:none) Macaca fascicularis testis cDNA, c... 37 3.9
AE016819_175(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 37 3.9
FB900225_1(FB900225|pid:none) Sequence 119498 from Patent WO2008... 37 3.9
BC107478_1(BC107478|pid:none) Homo sapiens mucin 21, cell surfac... 37 3.9
AE014295_274(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 37 3.9
AY358415_1(AY358415|pid:none) Homo sapiens clone DNA66674 KMQK69... 37 3.9
AK301645_1(AK301645|pid:none) Homo sapiens cDNA FLJ54412 complet... 37 3.9
BX294153_199(BX294153|pid:none) Rhodopirellula baltica SH 1 comp... 36 5.0
CP000431_5520(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 36 5.0
CR382129_144(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 36 5.0
CP000077_1062(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 36 5.0
CR380953_171(CR380953|pid:none) Candida glabrata strain CBS138 c... 36 5.0
FM992690_728(FM992690|pid:none) Candida dubliniensis CD36 chromo... 36 5.0
BT054230_1(BT054230|pid:none) Zea mays full-length cDNA clone ZM... 36 5.0
CP000499_31(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso... 36 5.0
AM746676_7850(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 36 5.0
CP000682_1015(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 36 5.0
AM494972_671(AM494972|pid:none) Leishmania braziliensis chromoso... 36 5.0
AM920437_53(AM920437|pid:none) Penicillium chrysogenum Wisconsin... 36 5.0
CP001160_421(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 36 5.0
AM920433_391(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 36 5.0
AF000900_1(AF000900|pid:none) Rattus norvegicus nucleoporin p45 ... 36 5.0
AL766845_56(AL766845|pid:none) Streptococcus agalactiae NEM316 c... 36 5.0
L19948_1(L19948|pid:none) Caenorhabditis elegans RNA helicase (g... 36 6.6
CP000001_4434(CP000001|pid:none) Bacillus cereus E33L, complete ... 36 6.6
(P32623) RecName: Full=Probable glycosidase CRH2; EC=3.... 36 6.6
CP000560_1188(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 36 6.6
CP000828_4419(CP000828|pid:none) Acaryochloris marina MBIC11017,... 36 6.6
CP000960_455(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c... 36 6.6
AC005321_2(AC005321|pid:none) Homo sapiens chromosome 19, cosmid... 36 6.6
BX255930_11(BX255930|pid:none) Zebrafish DNA sequence from clone... 36 6.6
A96717(A96717) unknown protein, 45065-49536 [imported] - Arabido... 36 6.6
A24713(A24713)sericin - silkworm (fragments) 36 6.6
L22173_6(L22173|pid:none) Saccharomyces cerevisiae aminonitrophe... 36 6.6
CP001344_4111(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 36 6.6
(Q93V72) RecName: Full=Glucan endo-1,3-beta-glucosidase-like pro... 36 6.6
BC110579_1(BC110579|pid:none) Homo sapiens transcription factor ... 36 6.6
AY960622_1(AY960622|pid:none) Phragmatopoma californica cement p... 36 6.6
CR382126_201(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 36 6.6
AE014296_2111(AE014296|pid:none) Drosophila melanogaster chromos... 36 6.6
(P34689) RecName: Full=ATP-dependent RNA helicase glh-1; ... 36 6.6
CP001510_2026(CP001510|pid:none) Methylobacterium extorquens AM1... 35 8.6
BA000001_578(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c... 35 8.6
AF435599_1(AF435599|pid:none) Plasmodium vivax isolate T131 mero... 35 8.6
T23076(T23076) hypothetical protein H12D21.6 - Caenorhabditis el... 35 8.6
CP000085_952(CP000085|pid:none) Burkholderia thailandensis E264 ... 35 8.6
(Q8J0P4) RecName: Full=Probable glycosidase crf1; EC=3.... 35 8.6
(P56959) RecName: Full=RNA-binding protein FUS; AltName: Full=Pr... 35 8.6
AL161590_39(AL161590|pid:none) Arabidopsis thaliana DNA chromoso... 35 8.6
U13646_1(U13646|pid:none) Caenorhabditis elegans cosmid ZK783, c... 35 8.6
A64596(A64596) hypothetical protein HP0609 - Helicobacter pylori... 35 8.6
FN357902_6(FN357902|pid:none) Schistosoma mansoni genome sequenc... 35 8.6
BX842647_302(BX842647|pid:none) Bdellovibrio bacteriovorus compl... 35 8.6
AK129134_1(AK129134|pid:none) Mus musculus mRNA for mKIAA0410 pr... 35 8.6
(Q8R332) RecName: Full=Nucleoporin p58/p45; AltName: Full=Nucleo... 35 8.6
BC040827_1(BC040827|pid:none) Mus musculus fusion, derived from ... 35 8.6
AE010301_216(AE010301|pid:none) Leptospira interrogans serovar L... 35 8.6
CT971583_123(CT971583|pid:none) Synechococcus WH7803 complete ge... 35 8.6
AL590787_5(AL590787|pid:none) Human DNA sequence from clone RP11... 35 8.6
(Q10168) RecName: Full=Nucleoporin nsp1; AltName: Full=Nuclear p... 35 8.6
AY093072_1(AY093072|pid:none) Arabidopsis thaliana unknown prote... 35 8.6
(P32323) RecName: Full=A-agglutinin anchorage subunit; AltName: ... 35 8.6
AC001645_4(AC001645|pid:none) Arabidopsis thaliana chromosome II... 35 8.6
AP003565_8(AP003565|pid:none) Oryza sativa Japonica Group genomi... 35 8.6
AC116963_55(AC116963|pid:none) Dictyostelium discoideum chromoso... 35 8.6
AK078279_1(AK078279|pid:none) Mus musculus adult male olfactory ... 35 8.6
CU928167_383(CU928167|pid:none) Kluyveromyces thermotolerans str... 35 8.6
CP000854_1390(CP000854|pid:none) Mycobacterium marinum M, comple... 35 8.6
CP000934_2413(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 35 8.6
CP001298_2361(CP001298|pid:none) Methylobacterium chloromethanic... 35 8.6
FM992688_1317(FM992688|pid:none) Candida dubliniensis CD36 chrom... 35 8.6
AM910983_48(AM910983|pid:none) Plasmodium knowlesi strain H chro... 35 8.6
CP001173_554(CP001173|pid:none) Helicobacter pylori G27, complet... 35 8.6
AE008923_3497(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 35 8.6
T34434(T34434) hypothetical protein K06A9.1a - Caenorhabditis el... 35 8.6
T34513(T34513)hypothetical protein ZK783.1 - Caenorhabditis eleg... 35 8.6
AY876634_1(AY876634|pid:none) Plasmodium vivax isolate B027 mero... 35 8.6
AF139756_1(AF139756|pid:none) Streptococcus pyogenes serum opaci... 35 8.6
CR759772_1(CR759772|pid:none) Human DNA sequence from clone DAMC... 35 8.6
>AP008218_337(AP008218|pid:none) Oryza sativa (japonica
cultivar-group) genomic DNA, chromosome 12.
Length = 937
Score = 66.2 bits (160), Expect = 5e-09
Identities = 48/121 (39%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Frame = +3
Query: 105 TSSSVFGSKPTVFGXXXXXXXX-VFGQT--TTKPSTGSSVFGQNSSSVFGQTTTPSSG-- 269
+ SS+FG KP+ G FG T T+P+ GSS FG +S+ FG TTTP+ G
Sbjct: 142 SGSSLFGQKPSFGGFGSSPSQSNAFGGTFQQTQPAFGSSTFGASSTPAFGATTTPAFGTT 201
Query: 270 TGVFGQNSSSVFGQTST---GTGVFGQNSSSIFGQSN----GVMGSTSTPSSTSIFGVKK 428
T FG S S+FG TS G+ FG + + FG S+ G S S +STS F
Sbjct: 202 TPAFGSTSPSLFGATSAPAFGSSGFGSSGTPAFGASSTPGFGASSSASFGTSTSAFSFGS 261
Query: 429 S 431
S
Sbjct: 262 S 262
Score = 65.1 bits (157), Expect = 1e-08
Identities = 53/136 (38%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Frame = +3
Query: 90 FGQPPTSSS-VFGSKPTVFGXXXXXXXXVFGQTTTK--PSTGSSVFGQNSSSVFGQTTTP 260
FGQ TS+S F KP FG TT TG S FG S+ FGQ +TP
Sbjct: 30 FGQASTSTSNPFAPKP-------------FGSPTTTFGAQTGGSPFGTTSTGAFGQPSTP 76
Query: 261 ---SSGTGVFGQNSSSVFGQTSTG------TGVFGQNSSSIFGQSNGVMGSTSTP----- 398
S+ TG FGQ S+ FG TS G T FG SSS FG S G++ P
Sbjct: 77 AFGSTSTGAFGQPSTPAFGATSAGAFGQPSTPAFGTPSSSPFGSSAPAFGASPAPAFGAT 136
Query: 399 -----SSTSIFGVKKS 431
S +S+FG K S
Sbjct: 137 SSTFGSGSSLFGQKPS 152
Score = 64.7 bits (156), Expect = 1e-08
Identities = 48/119 (40%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = +3
Query: 96 QPPTSSSVFGSKPT-VFGXXXXXXXXVFGQTTTK-PSTGSSVFGQNSSSVFGQTTTPSSG 269
QP SS FG+ T FG FG TT ST S+FG S+ FG + SSG
Sbjct: 174 QPAFGSSTFGASSTPAFGATTTP---AFGTTTPAFGSTSPSLFGATSAPAFGSSGFGSSG 230
Query: 270 TGVFGQNSSSVFGQTS-----TGTGVFGQNSSSIFGQSNGVMGSTSTPSSTSIFGVKKS 431
T FG +S+ FG +S T T F SS FGQ+ GST +STS FG + S
Sbjct: 231 TPAFGASSTPGFGASSSASFGTSTSAFSFGSSPSFGQTASTFGSTPFGTSTSPFGAQTS 289
Score = 46.6 bits (109), Expect = 0.004
Identities = 42/120 (35%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Frame = +3
Query: 174 FGQTTTKPSTGSSVFGQNSSSVFG----------QTTTP--------------------- 260
FGQ++T P FGQ SS+ FG T+ P
Sbjct: 8 FGQSSTSP------FGQTSSNPFGAQTGFGQASTSTSNPFAPKPFGSPTTTFGAQTGGSP 61
Query: 261 --SSGTGVFGQNSSSVFGQTSTGTGVFGQNSSSIFG-QSNGVMGSTSTPS----STSIFG 419
++ TG FGQ S+ FG ST TG FGQ S+ FG S G G STP+ S+S FG
Sbjct: 62 FGTTSTGAFGQPSTPAFG--STSTGAFGQPSTPAFGATSAGAFGQPSTPAFGTPSSSPFG 119
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,781,056,358
Number of extensions: 31345874
Number of successful extensions: 100148
Number of sequences better than 10.0: 347
Number of HSP's gapped: 92075
Number of HSP's successfully gapped: 963
Length of query: 720
Length of database: 1,051,180,864
Length adjustment: 136
Effective length of query: 584
Effective length of database: 611,008,840
Effective search space: 356829162560
Effective search space used: 356829162560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
1 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
1 |
| SF (FL, S) |
0 |
| CH (FL, L) |
2 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |