Contig-U15928-1
Contig ID Contig-U15928-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15928-1 (Contig-U15928-1Q) /CSM_Contig/Contig-U15928-1Q.Seq.d
ATTTTTTTTTTTCAAAAAGTAAAAATAAAATATTGAAAATGGAAGAGATA
CAAAAATTAATTAATGAATTAGGTGGTTCACAATATAAAGATAAAGATAC
AGAACATTATTCTGAAGAAGCAGTAGAGTTATTAATTAAAAAGATTGATA
ATAAATCAAAAGGGAAAACAGTTATTGAAAGTAATACATTAATTTATAAG
ACATTAGCAGATTGGTCAAAAGTTGAAGATAATAGAGAAACAATCATTAG
ATCACCATCAAATGTAATTGAAAAAACTTTTCAATTATTTGAATTCTTAT
TACCAAATGGCGTAGAAACATTAAATACAGATACTACAGTTGAACAATCA
GAATTATTTTCAATGGTTTGTAGATTACTTGGTAATTTAACCTATGAAAA
TGCACCAAATCGTGAATTTATCTTTGATAAAACTCCTTCCATTTTAAAAT
ATATTTCAAGTTTTGTATCTCAAACAAAGTATCAATCATTACAAAGAACT
TCTTGTGCTGCCATTGCAAATCTTTCTTCTGAAACTGATTTTATTCAACT
TGAATTCTTTAAATTAGGAGTAGTTTCAATTTTAATCGATTTAATTTGTA
GAGAAGGTACAACTGATGAAGTTAATCAAATGGCAATTAAAGCATTTAAT
AATTTAGTTGATAATGAAAATACTCAAGTTGATATTCATTTCAAAGAAAT
TCATAGATTATTAGGACAATTAAAGAAATCATTAAATAAAGAAGGTTATT
ATGAAAATTCATTCGCTAATGATTTGGTTTCATCATTATCAACTCTTTCT
CTTAATAAGGATTTACAAAAAGAAATATTAAAAGAAGGATTTTTAAATGA
TTTAATTGAATTAATTGAAGAATCAAATGTACATAGAGAAATGATTAATC
AATTTGAAGATGATGATATTGAAAAGGATAAGGATATTTCAATTGCACCA
TCAACATCAGAGTTAATATTTAAATTAGCCGATAATGATGACTATAGACA
ATACTTTTATAATAAGGAAAGAGATGGAAACGATGCAAATAACATTTTGG
ATAGAATGATAAAAATAATGACATCACCACCACCAGCCTATAAAGATGGC
GATAGCAAGGCTCAATTGAAAGCATTGGATGTTGCCAAAGTGAAGAAAAA
CATAACGAAAACCATTGCATTATGTTCATTAGAGGATGATGTAATCGATA
AATTCATTAAAACTCCAAAGATTTTCGTTGATTTATTGGTCGATACTGAA
GACACTGAAAGAATTGTAAATGGTGAAATGATCATTGGTAATCTCGCAAG
ATCCGAACCAAATTGTAGATTATTAAATTCATACAATGTCATTGAGCTAA
TTGCTGATATCATGAAAAAGTTTCCAAATTTTCAACCAATTCAACATTTA
GGTTTATCTTCCATTAGAAATCTCACACTTCCAACTATAAACAAAGGTTT
CAAACCAAGTTCAACTTTGATGGAAGATGTAGTTTTCAATTCAAAAGTAC
ACAATCAAGTCATTCAATTCGCTGCTTTATCTTTGATAAAGAATTTCATT
GGTTGTGATCAATCAAACTTAAAATTATTCTTGGAATTTCCAAATGCTCT
TCAATCATTATTGGATTTAGCCAATGGTAGAGTACCTGCAAGTATGGATG
ATGAATCTGATCAACAAGAACAATTACAATTAGATGATGCTAAAATTCAA
GAAATTGAAGAGAAATTTGAAGAAAAAGAAAAAACAATTGAAAAAACAGA
TGAAAAAACAGATGAAAAAACAAATGAAAAGAAACAATCAAAGAAAGATA
TGAGAGTAATTTATGAAGCAACTAGATTATTACTTAGATTTTTAGATAAT
TCTGAATTATCAAATCATCAAGAGAAAATGAAACAATTGATTGAGGAATC
AGTTGAACCATTCTTTAGTTTATTACAATCTCCTTTCCCAATTTTACAAG
TTGAAGGTGCAAAAGGTTTAGTTTTACTCATTAAACATGATAAACAACTC
TTTTTATCACGTCCATCATGGGTAAAAGATTTGGTTGAAGTTTTATCCCT
TTCAATCATTCCTTTCCAACAACTCTCAAGAGAACAATCAACAATTACTA
CCGATCCAAATCATCAAAAATTAATTGCACAAATTCAATCAAATTGTAAT
TTTAGTACCGAACTTCAAAATGTTATCCTTTCAAATATTTTTTACAATTT
CTCTTTAGATGAATCAATTTGTAAAAAAATGAAAGATCAAAATGTTATTT
CTGAATTAAAAACTTTAAAATCAAAACAAGATGCACCACAATCATTAACA
AATTTAATTCAAAAAATTTTAGTTCAATTAACAATTTAATTTAATTTAAA
TTTAAATAAATAAATAAATAAAATAAAATTAAA----------GAAATTC
AAGAGATTNTTGAGGAATNTGAAGAAACAGTTGAAACAACTGATGAAACA
GCTGATGAAACAGCTGATGAAACGAATCAATCGAAGCAATCTANGAGAGT
TAT

Gap gap included
Contig length 2493
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1971076
End point 1968665
Strand (PLUS/MINUS) MINUS
Number of clones 41
Number of EST 72
Link to clone list U15928
List of clone(s)

est1=CHF569F,1,199
est2=CHJ657F,1,565
est3=CHG878F,2,682
est4=CHN609F,2,605
est5=VHC409F,2,626
est6=CHD531F,4,625
est7=CHG144F,12,492
est8=CHM833F,13,563
est9=VHB203F,13,693
est10=CHG621F,14,624
est11=CHJ358F,14,628
est12=CHK868F,14,694
est13=CHL851F,14,605
est14=CHM720F,14,603
est15=CHN376F,14,629
est16=CHQ791F,14,652
est17=CHR291F,14,630
est18=VFB104F,14,574
est19=VHB762F,14,622
est20=VHK196F,14,603
est21=VHL181F,14,673
est22=AHQ564F,15,566
est23=CFJ429E,16,1709
est24=SFJ725F,16,671
est25=CHG475F,18,432
est26=VHD768F,19,568
est27=CHG791F,21,671
est28=CHQ524F,21,654
est29=CHR325F,21,566
est30=CHH873F,25,568
est31=CHG493F,27,559
est32=SLG152F,28,265
est33=CHK668F,131,397
est34=CHD531Z,1030,1740
est35=VFB104Z,1057,1644
est36=SLG152Z,1146,1741
est37=CHG493Z,1450,2249
est38=CHF569Z,1585,2358
est39=VHD768Z,1587,2382
est40=CHN609Z,1588,2343
est41=VHB203Z,1595,2383
est42=CHQ791Z,1601,2383
est43=CHR325Z,1602,2383
est44=CHM833Z,1628,2382
est45=CHP533Z,1628,2375
est46=CHG144Z,1629,2383
est47=CHQ524Z,1629,2383
est48=SFJ725Z,1665,2383
est49=VHA479Z,1668,2379
est50=VHB762Z,1668,2382
est51=VHL181Z,1668,2267
est52=CHG791Z,1675,2376
est53=CHR291Z,1676,2376
est54=VHC409Z,1676,2383
est55=VHK196Z,1676,2382
est56=CHL851Z,1677,2382
est57=CHG621Z,1678,2383
est58=AHQ564Z,1680,2383
est59=CHG878Z,1681,2383
est60=CHH264Z,1681,2383
est61=CHL869Z,1681,2296
est62=CHG503Z,1684,2379
est63=CHK868Z,1741,2379
est64=CHJ657Z,1748,2383
est65=CHF460Z,1751,2381
est66=CHJ358Z,1788,2282
est67=CHK884Z,1825,2383
est68=CHH873Z,1836,2359
est69=CHG475Z,1999,2358
est70=CHN376Z,2065,2358
est71=CHQ247Z,2100,2199
est72=CHM720Z,2384,2493
Translated Amino Acid sequence
fffsksknkilkmeeiqklinelggsqykdkdtehyseeavellikkidnkskgktvies
ntliyktladwskvednretiirspsnviektfqlfefllpngvetlntdttveqselfs
mvcrllgnltyenapnrefifdktpsilkyissfvsqtkyqslqrtscaaianlssetdf
iqleffklgvvsilidlicregttdevnqmaikafnnlvdnentqvdihfkeihrllgql
kkslnkegyyensfandlvsslstlslnkdlqkeilkegflndlielieesnvhreminq
fedddiekdkdisiapstselifkladnddyrqyfynkerdgndannildrmikimtspp
paykdgdskaqlkaldvakvkknitktialcsleddvidkfiktpkifvdllvdtedter
ivngemiignlarsepncrllnsynvieliadimkkfpnfqpiqhlglssirnltlptin
kgfkpsstlmedvvfnskvhnqviqfaalsliknfigcdqsnlklflefpnalqslldla
ngrvpasmddesdqqeqlqlddakiqeieekfeekektiektdektdektnekkqskkdm
rviyeatrlllrfldnselsnhqekmkqlieesvepffsllqspfpilqvegakglvlli
khdkqlflsrpswvkdlvevlslsiipfqqlsreqstittdpnhqkliaqiqsncnfste
lqnvilsnifynfsldesickkmkdqnviselktlkskqdapqsltnliqkilvqlti*f
nlnlnk*INKIKL---

---EIQEIXEEXEETVETTDETADETADETNQSKQSXRV


Translated Amino Acid sequence (All Frames)
Frame A:
ifffqkvkiky*kwkrykn*lmn*vvhnikikiqniilkkq*sy*lkrliinqkgkqllk
vih*firh*qigqklkiiekqsldhhqm*lkklfnylnsyyqma*kh*iqilqlnnqnyf
qwfvdylvi*pmkmhqivnlslikllpf*nifqvlylkqsinhykellvlplqifllkli
lfnlnsln*e*fqf*si*fvekvqlmklikwqlkhlii*limkilklifiskkfidy*dn
*rnh*ikkvimkihslmiwfhhyqlflliriykkky*kkdf*mi*ln*lknqmyiek*li
nlkmmilkririfqlhhqhqs*yln*pimmtidntfiirkemetmqitfwie**k**hhh
hqpikmaiarln*khwmlpk*rkt*rkplhyvh*rmm*sinslklqrfsliywsilktlk
el*mvk*slvisqdpnqivdy*ihtmsls*llis*ksfqifnqfni*vylpleishfql*
tkvsnqvql*wkm*fsiqkytiksfnsllyl**rislvvinqt*nyswnfqmlfnhywi*
pmveylqvwmmnlinknnyn*mmlkfkklkrnlkkkkkqlkkqmkkqmkkqmkrnnqrki
*e*fmkqldyyldf*iilnyqiikrk*nn*lrnqlnhslvyynllsqfyklkvqkv*fys
lnminnsfyhvhhg*kiwlkfypfqsflsnnsqennqqllpiqiikn*lhkfnqivilvp
nfkmlsfqifftisl*mnqfvkk*kikmlfln*kl*nqnkmhhnh*qi*fkkf*fn*qfn
li*i*ink*ik*n*---

---EIQEIXEEXEETVETTDETADETADETNQSKQSXRV

Frame B:
ffffkk*k*niengrdtkin**irwfti*r*ryrtlf*rssrvin*kd***ikrensy*k
*yinl*disrlvks*r**rnnh*itikcn*knfsii*ilitkwrrnikyryys*tiriif
ngl*itw*fnl*kctks*iyl**nsfhfkiyfkfcisnkvsiitknflcchcksff*n*f
yst*il*irssfnfnrfnl*rryn**s*sngn*si**fs***kyss*ysfqrns*iirti
keiik*rrll*kfir**fgfiiinsfs**gftkrnikrrifk*fn*in*rikct*rnd*s
i*r**y*kg*gyfnctinirvni*isr***l*till**gkrwkrck*hfg*ndknnditt
tsl*rwr*qgsiesigccqseekhnenhcimfirg*cnr*ih*nskdfr*figry*rh*k
nckw*ndhw*srkirtkl*iikfiqch*anc*yhekvskfstnstfrfifh*kshtsnyk
qrfqtkfnfdgrcsfqfkstqsshsircfifdkefhwl*siklkiilgiskcssiiigfs
qw*stckyg**i*strtitir*c*nsrn*rei*rkrknn*knr*knr*knk*ketikery
esnl*sn*iit*ifr*f*iikssrenetid*gis*til*fitisfpnfts*rckrfsfth
*t**ttlfitsimgkrfg*sfipfnhsfpttlkrtinnyyrsksskinctnsikl*f*yr
tskcypfkyflqflfr*inl*knerskcyf*iknfkiktrcttiinkfnsknfssinnli
*fkfk*ink*nkik---

---kfkrxlrnxkkqlkqlmkqlmkqlmkrinrsnlxel

Frame C:
fffsksknkilkmeeiqklinelggsqykdkdtehyseeavellikkidnkskgktvies
ntliyktladwskvednretiirspsnviektfqlfefllpngvetlntdttveqselfs
mvcrllgnltyenapnrefifdktpsilkyissfvsqtkyqslqrtscaaianlssetdf
iqleffklgvvsilidlicregttdevnqmaikafnnlvdnentqvdihfkeihrllgql
kkslnkegyyensfandlvsslstlslnkdlqkeilkegflndlielieesnvhreminq
fedddiekdkdisiapstselifkladnddyrqyfynkerdgndannildrmikimtspp
paykdgdskaqlkaldvakvkknitktialcsleddvidkfiktpkifvdllvdtedter
ivngemiignlarsepncrllnsynvieliadimkkfpnfqpiqhlglssirnltlptin
kgfkpsstlmedvvfnskvhnqviqfaalsliknfigcdqsnlklflefpnalqslldla
ngrvpasmddesdqqeqlqlddakiqeieekfeekektiektdektdektnekkqskkdm
rviyeatrlllrfldnselsnhqekmkqlieesvepffsllqspfpilqvegakglvlli
khdkqlflsrpswvkdlvevlslsiipfqqlsreqstittdpnhqkliaqiqsncnfste
lqnvilsnifynfsldesickkmkdqnviselktlkskqdapqsltnliqkilvqlti*f
nlnlnk*INKIKL---

---nsrdx*gx*rns*nn**ns**ns**nesieaixesy

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15928-1 (Contig-U15928-1Q)
/CSM_Contig/Contig-U15928-1Q.Seq.d
(2503 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15928-1 (Contig-U15928-1Q) /CSM_Contig/Conti... 3223 0.0
Contig-U13117-1 (Contig-U13117-1Q) /CSM_Contig/Conti... 88 8e-17
Contig-U15002-1 (Contig-U15002-1Q) /CSM_Contig/Conti... 40 0.016
Contig-U11642-1 (Contig-U11642-1Q) /CSM_Contig/Conti... 40 0.016
Contig-U03569-1 (Contig-U03569-1Q) /CSM_Contig/Conti... 40 0.016
Contig-U15937-1 (Contig-U15937-1Q) /CSM_Contig/Conti... 38 0.064
Contig-U15903-1 (Contig-U15903-1Q) /CSM_Contig/Conti... 38 0.064
Contig-U15054-1 (Contig-U15054-1Q) /CSM_Contig/Conti... 38 0.064
Contig-U14238-1 (Contig-U14238-1Q) /CSM_Contig/Conti... 38 0.064
Contig-U13867-1 (Contig-U13867-1Q) /CSM_Contig/Conti... 38 0.064

>Contig-U15928-1 (Contig-U15928-1Q) /CSM_Contig/Contig-U15928-1Q.Seq.d
Length = 2503

Score = 3223 bits (1626), Expect = 0.0
Identities = 1626/1626 (100%)
Strand = Plus / Plus


Query: 66 gaattaggtggttcacaatataaagataaagatacagaacattattctgaagaagcagta 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gaattaggtggttcacaatataaagataaagatacagaacattattctgaagaagcagta 125


Query: 126 gagttattaattaaaaagattgataataaatcaaaagggaaaacagttattgaaagtaat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gagttattaattaaaaagattgataataaatcaaaagggaaaacagttattgaaagtaat 185


Query: 186 acattaatttataagacattagcagattggtcaaaagttgaagataatagagaaacaatc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acattaatttataagacattagcagattggtcaaaagttgaagataatagagaaacaatc 245


Query: 246 attagatcaccatcaaatgtaattgaaaaaacttttcaattatttgaattcttattacca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attagatcaccatcaaatgtaattgaaaaaacttttcaattatttgaattcttattacca 305


Query: 306 aatggcgtagaaacattaaatacagatactacagttgaacaatcagaattattttcaatg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatggcgtagaaacattaaatacagatactacagttgaacaatcagaattattttcaatg 365


Query: 366 gtttgtagattacttggtaatttaacctatgaaaatgcaccaaatcgtgaatttatcttt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtttgtagattacttggtaatttaacctatgaaaatgcaccaaatcgtgaatttatcttt 425


Query: 426 gataaaactccttccattttaaaatatatttcaagttttgtatctcaaacaaagtatcaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gataaaactccttccattttaaaatatatttcaagttttgtatctcaaacaaagtatcaa 485


Query: 486 tcattacaaagaacttcttgtgctgccattgcaaatctttcttctgaaactgattttatt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcattacaaagaacttcttgtgctgccattgcaaatctttcttctgaaactgattttatt 545


Query: 546 caacttgaattctttaaattaggagtagtttcaattttaatcgatttaatttgtagagaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caacttgaattctttaaattaggagtagtttcaattttaatcgatttaatttgtagagaa 605


Query: 606 ggtacaactgatgaagttaatcaaatggcaattaaagcatttaataatttagttgataat 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggtacaactgatgaagttaatcaaatggcaattaaagcatttaataatttagttgataat 665


Query: 666 gaaaatactcaagttgatattcatttcaaagaaattcatagattattaggacaattaaag 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaaaatactcaagttgatattcatttcaaagaaattcatagattattaggacaattaaag 725


Query: 726 aaatcattaaataaagaaggttattatgaaaattcattcgctaatgatttggtttcatca 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aaatcattaaataaagaaggttattatgaaaattcattcgctaatgatttggtttcatca 785


Query: 786 ttatcaactctttctcttaataaggatttacaaaaagaaatattaaaagaaggattttta 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttatcaactctttctcttaataaggatttacaaaaagaaatattaaaagaaggattttta 845


Query: 846 aatgatttaattgaattaattgaagaatcaaatgtacatagagaaatgattaatcaattt 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aatgatttaattgaattaattgaagaatcaaatgtacatagagaaatgattaatcaattt 905


Query: 906 gaagatgatgatattgaaaaggataaggatatttcaattgcaccatcaacatcagagtta 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaagatgatgatattgaaaaggataaggatatttcaattgcaccatcaacatcagagtta 965


Query: 966 atatttaaattagccgataatgatgactatagacaatacttttataataaggaaagagat 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 atatttaaattagccgataatgatgactatagacaatacttttataataaggaaagagat 1025


Query: 1026 ggaaacgatgcaaataacattttggatagaatgataaaaataatgacatcaccaccacca 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 ggaaacgatgcaaataacattttggatagaatgataaaaataatgacatcaccaccacca 1085


Query: 1086 gcctataaagatggcgatagcaaggctcaattgaaagcattggatgttgccaaagtgaag 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 gcctataaagatggcgatagcaaggctcaattgaaagcattggatgttgccaaagtgaag 1145


Query: 1146 aaaaacataacgaaaaccattgcattatgttcattagaggatgatgtaatcgataaattc 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 aaaaacataacgaaaaccattgcattatgttcattagaggatgatgtaatcgataaattc 1205


Query: 1206 attaaaactccaaagattttcgttgatttattggtcgatactgaagacactgaaagaatt 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 attaaaactccaaagattttcgttgatttattggtcgatactgaagacactgaaagaatt 1265


Query: 1266 gtaaatggtgaaatgatcattggtaatctcgcaagatccgaaccaaattgtagattatta 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 gtaaatggtgaaatgatcattggtaatctcgcaagatccgaaccaaattgtagattatta 1325


Query: 1326 aattcatacaatgtcattgagctaattgctgatatcatgaaaaagtttccaaattttcaa 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1326 aattcatacaatgtcattgagctaattgctgatatcatgaaaaagtttccaaattttcaa 1385


Query: 1386 ccaattcaacatttaggtttatcttccattagaaatctcacacttccaactataaacaaa 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 ccaattcaacatttaggtttatcttccattagaaatctcacacttccaactataaacaaa 1445


Query: 1446 ggtttcaaaccaagttcaactttgatggaagatgtagttttcaattcaaaagtacacaat 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 ggtttcaaaccaagttcaactttgatggaagatgtagttttcaattcaaaagtacacaat 1505


Query: 1506 caagtcattcaattcgctgctttatctttgataaagaatttcattggttgtgatcaatca 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 caagtcattcaattcgctgctttatctttgataaagaatttcattggttgtgatcaatca 1565


Query: 1566 aacttaaaattattcttggaatttccaaatgctcttcaatcattattggatttagccaat 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 aacttaaaattattcttggaatttccaaatgctcttcaatcattattggatttagccaat 1625


Query: 1626 ggtagagtacctgcaagtatggatgatgaatctgatcaacaagaacaattacaattagat 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 ggtagagtacctgcaagtatggatgatgaatctgatcaacaagaacaattacaattagat 1685


Query: 1686 gatgct 1691
||||||
Sbjct: 1686 gatgct 1691


Score = 942 bits (475), Expect = 0.0
Identities = 489/496 (98%)
Strand = Plus / Plus


Query: 1797 gatatgagagtaatttatgaagcaactagattattacttagatttttagataattctgaa 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 gatatgagagtaatttatgaagcaactagattattacttagatttttagataattctgaa 1856


Query: 1857 ttatcaaatcatcaagagaaaatgaaacaattgattgaggaatcagttgaaccattcttt 1916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 ttatcaaatcatcaagagaaaatgaaacaattgattgaggaatcagttgaaccattcttt 1916


Query: 1917 agtttattacaatctcctttcccaattttacaagttgaaggtgcaaaaggtttagtttta 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 agtttattacaatctcctttcccaattttacaagttgaaggtgcaaaaggtttagtttta 1976


Query: 1977 ctcattaaacatgataaacaactctttttatcacgtccatcatgggtaaaagatttggtt 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 ctcattaaacatgataaacaactctttttatcacgtccatcatgggtaaaagatttggtt 2036


Query: 2037 gaagttttatccctttcaatcattcctttccaacaactctcaagagaacaatcaacaatt 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 gaagttttatccctttcaatcattcctttccaacaactctcaagagaacaatcaacaatt 2096


Query: 2097 actaccgatccaaatcatcaaaaattaattgcacaaattcaatcaaattgtaattttagt 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2097 actaccgatccaaatcatcaaaaattaattgcacaaattcaatcaaattgtaattttagt 2156


Query: 2157 accgaacttcaaaatgttatcctttcaaatattttttacaatttctctttagatgaatca 2216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2157 accgaacttcaaaatgttatcctttcaaatattttttacaatttctctttagatgaatca 2216


Query: 2217 atttgtnnnnnnntgaaagatcaaaatgttatttctgaattaaaaactttaaaatcaaaa 2276
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 atttgtaaaaaaatgaaagatcaaaatgttatttctgaattaaaaactttaaaatcaaaa 2276


Query: 2277 caagatgcaccacaat 2292
||||||||||||||||
Sbjct: 2277 caagatgcaccacaat 2292


Score = 200 bits (101), Expect = 7e-51
Identities = 110/110 (100%)
Strand = Plus / Plus


Query: 2394 gaaattcaagagattnttgaggaatntgaagaaacagttgaaacaactgatgaaacagct 2453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 gaaattcaagagattnttgaggaatntgaagaaacagttgaaacaactgatgaaacagct 2453


Query: 2454 gatgaaacagctgatgaaacgaatcaatcgaagcaatctangagagttat 2503
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2454 gatgaaacagctgatgaaacgaatcaatcgaagcaatctangagagttat 2503


>Contig-U13117-1 (Contig-U13117-1Q) /CSM_Contig/Contig-U13117-1Q.Seq.d
Length = 112

Score = 87.7 bits (44), Expect = 8e-17
Identities = 82/100 (82%)
Strand = Plus / Plus


Query: 132 ttaattaaaaagattgataataaatcaaaagggaaaacagttattgaaagtaatacatta 191
||| |||||||||| |||| ||||||||| |||||| ||||| | ||| ||||| | |||
Sbjct: 1 ttanttaaaaagatngatantaaatcaaaggggaaancagttntngaangtaatncntta 60


Query: 192 atttataagacattagcagattggtcaaaagttgaagata 231
||||||| || ||| || || || ||||||||||| |||
Sbjct: 61 ntttataanacnttaccanatnggncaaaagttgaanata 100


>Contig-U15002-1 (Contig-U15002-1Q) /CSM_Contig/Contig-U15002-1Q.Seq.d
Length = 1578

Score = 40.1 bits (20), Expect = 0.016
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 411 cgtgaatttatctttgataaaact 434
||||||||||||||||| ||||||
Sbjct: 1040 cgtgaatttatctttgaaaaaact 1063


Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 848 tgatttaattgaattaat 865
||||||||||||||||||
Sbjct: 1035 tgatttaattgaattaat 1018


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,140
Number of Sequences: 8402
Number of extensions: 60140
Number of successful extensions: 7093
Number of sequences better than 10.0: 295
length of query: 2503
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2486
effective length of database: 7,932,708
effective search space: 19720712088
effective search space used: 19720712088
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.28
Homology vs DNA
Query= Contig-U15928-1 (Contig-U15928-1Q) /CSM_Contig/Contig-U15928-1Q.Seq.d
(2503 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AF006055) Dictyostelium discoideum darlin (darA) gene, comp... 1752 0.0 1
(BJ375620) Dictyostelium discoideum cDNA clone:ddc19j08, 3' ... 1493 0.0 1
(BJ376659) Dictyostelium discoideum cDNA clone:ddc29m07, 3' ... 1310 0.0 1
(BJ418523) Dictyostelium discoideum cDNA clone:ddv33e02, 5' ... 1235 0.0 1
(BJ367679) Dictyostelium discoideum cDNA clone:ddc43h18, 5' ... 1223 0.0 1
(BJ365594) Dictyostelium discoideum cDNA clone:ddc35l20, 5' ... 1201 0.0 1
(BJ365571) Dictyostelium discoideum cDNA clone:ddc35f23, 5' ... 1185 0.0 1
(BJ429317) Dictyostelium discoideum cDNA clone:ddv3g01, 3' e... 1158 0.0 1
(BJ361926) Dictyostelium discoideum cDNA clone:ddc19j08, 5' ... 1144 0.0 1
(BJ371133) Dictyostelium discoideum cDNA clone:ddc56e24, 5' ... 1104 0.0 1
(BJ419087) Dictyostelium discoideum cDNA clone:ddv35b04, 5' ... 1102 0.0 1
(BJ368986) Dictyostelium discoideum cDNA clone:ddc48h19, 5' ... 1102 0.0 1
(BJ418978) Dictyostelium discoideum cDNA clone:ddv34l15, 5' ... 1094 0.0 1
(BJ363988) Dictyostelium discoideum cDNA clone:ddc29m07, 5' ... 1094 0.0 1
(BJ366868) Dictyostelium discoideum cDNA clone:ddc40d15, 5' ... 1092 0.0 1
(BJ365367) Dictyostelium discoideum cDNA clone:ddc35i06, 5' ... 1092 0.0 1
(AU039670) Dictyostelium discoideum slug cDNA, clone SLG152. 1082 0.0 1
(BJ424832) Dictyostelium discoideum cDNA clone:ddv53a21, 5' ... 955 0.0 2
(BJ389837) Dictyostelium discoideum cDNA clone:dds20b07, 5' ... 944 0.0 2
(BJ379443) Dictyostelium discoideum cDNA clone:ddc34j24, 3' ... 815 0.0 2
(BJ370883) Dictyostelium discoideum cDNA clone:ddc55f23, 5' ... 765 0.0 2
(BJ370738) Dictyostelium discoideum cDNA clone:ddc55o05, 5' ... 765 0.0 3
(BJ368536) Dictyostelium discoideum cDNA clone:ddc47h05, 5' ... 1053 0.0 1
(BJ424283) Dictyostelium discoideum cDNA clone:ddv51o23, 5' ... 765 0.0 2
(BJ368165) Dictyostelium discoideum cDNA clone:ddc45f14, 5' ... 761 0.0 2
(BJ379047) Dictyostelium discoideum cDNA clone:ddc33i17, 3' ... 841 0.0 2
(BJ369019) Dictyostelium discoideum cDNA clone:ddc49a04, 5' ... 1019 0.0 1
(BJ438826) Dictyostelium discoideum cDNA clone:ddv38h17, 3' ... 841 0.0 2
(BJ384306) Dictyostelium discoideum cDNA clone:ddc49a04, 3' ... 841 0.0 2
(BJ437051) Dictyostelium discoideum cDNA clone:ddv33e02, 3' ... 841 0.0 2
(BJ411118) Dictyostelium discoideum cDNA clone:ddv3g01, 5' e... 999 0.0 1
(BJ385815) Dictyostelium discoideum cDNA clone:ddc56b07, 3' ... 841 0.0 2
(BJ366098) Dictyostelium discoideum cDNA clone:ddc37b20, 5' ... 983 0.0 1
(BJ339259) Dictyostelium discoideum cDNA clone:dda64o15, 5' ... 983 0.0 1
(BJ370992) Dictyostelium discoideum cDNA clone:ddc56b07, 5' ... 979 0.0 1
(BJ385688) Dictyostelium discoideum cDNA clone:ddc55f23, 3' ... 737 0.0 3
(BJ365306) Dictyostelium discoideum cDNA clone:ddc34j24, 5' ... 965 0.0 1
(BJ368573) Dictyostelium discoideum cDNA clone:ddc47b10, 5' ... 765 0.0 2
(BJ367128) Dictyostelium discoideum cDNA clone:ddc41a16, 5' ... 408 0.0 3
(BJ383493) Dictyostelium discoideum cDNA clone:ddc53a09, 3' ... 841 0.0 2
(BJ385514) Dictyostelium discoideum cDNA clone:ddc55o05, 3' ... 841 0.0 2
(BJ383795) Dictyostelium discoideum cDNA clone:ddc47b10, 3' ... 841 0.0 2
(BJ420216) Dictyostelium discoideum cDNA clone:ddv38h17, 5' ... 928 0.0 1
(BJ379279) Dictyostelium discoideum cDNA clone:ddc34g11, 3' ... 841 0.0 3
(BJ402035) Dictyostelium discoideum cDNA clone:dds20b07, 3' ... 841 0.0 2
(BJ443675) Dictyostelium discoideum cDNA clone:ddv53a21, 3' ... 841 0.0 2
(BJ385989) Dictyostelium discoideum cDNA clone:ddc56e24, 3' ... 841 0.0 2
(BJ382683) Dictyostelium discoideum cDNA clone:ddc45f14, 3' ... 841 0.0 2
(BJ437563) Dictyostelium discoideum cDNA clone:ddv34l15, 3' ... 841 0.0 2
(BJ379518) Dictyostelium discoideum cDNA clone:ddc35i06, 3' ... 841 0.0 2
(BJ382705) Dictyostelium discoideum cDNA clone:ddc45j18, 3' ... 841 0.0 2
(BJ379731) Dictyostelium discoideum cDNA clone:ddc35f23, 3' ... 833 0.0 2
(BJ382008) Dictyostelium discoideum cDNA clone:ddc43h18, 3' ... 841 0.0 1
(BJ381426) Dictyostelium discoideum cDNA clone:ddc41a16, 3' ... 841 0.0 1
(BJ379493) Dictyostelium discoideum cDNA clone:ddc35e01, 3' ... 841 0.0 1
(BJ443116) Dictyostelium discoideum cDNA clone:ddv51o23, 3' ... 833 0.0 2
(BJ437672) Dictyostelium discoideum cDNA clone:ddv35b04, 3' ... 833 0.0 2
(BJ380006) Dictyostelium discoideum cDNA clone:ddc36o16, 3' ... 833 0.0 2
(BJ365160) Dictyostelium discoideum cDNA clone:ddc34g11, 5' ... 833 0.0 1
(BJ436683) Dictyostelium discoideum cDNA clone:ddv31n20, 3' ... 729 0.0 3
(BJ379760) Dictyostelium discoideum cDNA clone:ddc35l20, 3' ... 733 0.0 2
(BJ357786) Dictyostelium discoideum cDNA clone:dda64o15, 3' ... 733 0.0 2
(BJ381150) Dictyostelium discoideum cDNA clone:ddc40d15, 3' ... 813 0.0 1
(BJ382084) Dictyostelium discoideum cDNA clone:ddc43h22, 3' ... 799 0.0 1
(BJ378711) Dictyostelium discoideum cDNA clone:ddc32h16, 3' ... 684 0.0 2
(BJ380309) Dictyostelium discoideum cDNA clone:ddc37b20, 3' ... 668 0.0 2
(BJ365282) Dictyostelium discoideum cDNA clone:ddc34f20, 5' ... 716 0.0 1
(BJ367675) Dictyostelium discoideum cDNA clone:ddc43g18, 5' ... 391 e-120 2
(BJ379420) Dictyostelium discoideum cDNA clone:ddc34f20, 3' ... 270 e-103 2
(AU061803) Dictyostelium discoideum slug cDNA, clone SLG152. 387 e-102 1
(BJ384265) Dictyostelium discoideum cDNA clone:ddc48h19, 3' ... 321 7e-83 1
(BJ364955) Dictyostelium discoideum cDNA clone:ddc33i17, 5' ... 224 1e-53 1
(BJ383745) Dictyostelium discoideum cDNA clone:ddc47h05, 3' ... 198 7e-46 1
(BJ385281) Dictyostelium discoideum cDNA clone:ddc54m12, 3' ... 155 1e-32 1
(BJ370189) Dictyostelium discoideum cDNA clone:ddc53a09, 5' ... 86 7e-12 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 3e-04 17
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 36 3e-04 22
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 40 0.008 18
(AM180355) Clostridium difficile 630 complete genome. 42 0.012 22
(AE017263) Mesoplasma florum L1 complete genome. 36 0.013 23
(CP000382) Clostridium novyi NT, complete genome. 40 0.015 22
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 34 0.019 11
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 0.024 16
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 0.033 21
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com... 34 0.033 24
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.035 20
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D... 34 0.047 24
(BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com... 36 0.098 23
(AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp... 36 0.099 23
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 52 0.10 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 52 0.10 1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.11 14
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.13 12
(CP000046) Staphylococcus aureus subsp. aureus COL, complete... 34 0.17 23
(CU914242) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.17 9
(EJ539236) 1092955347632 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.20 2
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g... 38 0.20 23
(BX571857) Staphylococcus aureus strain MSSA476, complete ge... 34 0.20 25
(EJ243222) 1095333015121 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.25 2
(BJ345523) Dictyostelium discoideum cDNA clone:dda23p20, 3' ... 38 0.25 3
(EJ567021) 1092959727063 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.26 2
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 38 0.34 24
(CZ949380) 262268 Tomato EcoRI BAC Library Solanum lycopersi... 40 0.36 3
(CQ522481) Sequence 54348 from Patent WO0160860. 50 0.41 1
(AY940097) Homo sapiens X-ray repair complementing defective... 50 0.41 1
(AC096560) Homo sapiens BAC clone RP11-241F6 from 2, complet... 50 0.41 1
(AC094085) Homo sapiens chromosome 5 clone CTD-2110K23, comp... 50 0.41 1
(AC022416) Homo sapiens chromosome 5 clone CTC-489P21, compl... 50 0.41 1
(AC099510) Homo sapiens chromosome 5 clone RP11-291L18, WORK... 50 0.41 1
(AC090073) Homo sapiens chromosome 5 clone CTD-3221I19, WORK... 50 0.41 1
(EJ614876) 1092963011050 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.41 1
(EJ454877) 1093017362455 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.41 1
(CL024751) CH216-20C18_RM1.1 CH216 Xenopus (Silurana) tropic... 50 0.41 1
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 34 0.51 24
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 40 0.51 20
(BX147696) Danio rerio genomic clone DKEY-104L18, genomic su... 32 0.64 4
(AM481747) Vitis vinifera contig VV78X033720.6, whole genome... 34 0.66 5
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 34 0.66 24
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 34 0.66 24
(FK172165) XABT193719.b1 Gateway compatible cien cDNA librar... 42 0.70 2
(AE017308) Mycoplasma mobile 163K complete genome. 36 0.75 22
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 0.80 20
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 38 0.83 23
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 46 0.99 18
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 1.0 20
(D82024) Dictyostelium discoideum topA gene for DNA topoisom... 38 1.0 5
(BX548174) Prochlorococcus marinus MED4 complete genome. 36 1.1 21
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp... 34 1.2 24
(AC170215) Bos taurus clone CH240-261B5, WORKING DRAFT SEQUE... 40 1.3 9
(EK427089) 1095516039262 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.3 3
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 1.4 18
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 44 1.6 21
(BX663495) Zebrafish DNA sequence from clone DKEY-116G14 in ... 48 1.6 1
(AC201519) Strongylocentrotus purpuratus clone R3-3088L20, W... 48 1.6 1
(AC201080) Strongylocentrotus purpuratus clone R3-13C4, WORK... 48 1.6 1
(AC195884) Zea mays chromosome 1 clone CH201-268C14; ZMMBBc0... 48 1.6 1
(AC184371) Strongylocentrotus purpuratus clone R3-4002P10, W... 48 1.6 1
(AC184365) Strongylocentrotus purpuratus clone R3-3122J24, W... 48 1.6 1
(AC180345) Strongylocentrotus purpuratus clone R3-3116J11, W... 48 1.6 1
(AC179191) Strongylocentrotus purpuratus clone R3-4019E5, WO... 48 1.6 1
(AC178449) Strongylocentrotus purpuratus clone R3-113B01, WO... 48 1.6 1
(AC177470) Strongylocentrotus purpuratus clone R3-61D7, WORK... 48 1.6 1
(AC177335) Strongylocentrotus purpuratus clone R3-46L21, WOR... 48 1.6 1
(AC177196) Strongylocentrotus purpuratus clone R3-4018K2, WO... 48 1.6 1
(AC177143) Strongylocentrotus purpuratus clone R3-4014O10, W... 48 1.6 1
(AC176845) Strongylocentrotus purpuratus clone R3-3120G9, WO... 48 1.6 1
(AC174112) Strongylocentrotus purpuratus clone R3-1016I17, W... 48 1.6 1
(AC172394) Strongylocentrotus purpuratus clone R3-14J24, WOR... 48 1.6 1
(DU305832) 1098448346883 CHORI-243 Ovis aries genomic clone ... 48 1.6 1
(DU277710) 1098448086933 CHORI-243 Ovis aries genomic clone ... 48 1.6 1
(CT841347) Equus caballus GSS, BAC clone CH241-12M16, SP6 en... 48 1.6 1
(CC006288) PUEAK39TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 1.6 1
(CV067522) Le_mx0_38d11_SP6 Little Skate Multiple Tissues, N... 48 1.6 1
(CP000674) Clostridium kluyveri DSM 555 plasmid pCKL555A, co... 48 1.6 1
(CP000312) Clostridium perfringens SM101, complete genome. 48 1.6 1
(AY286123) Cyanidioschyzon merolae DBV201 chloroplast, compl... 38 1.7 7
(AC152158) Medicago truncatula clone mth2-139g10, complete s... 32 1.8 9
(AC165747) Bos taurus clone CH240-165B2, WORKING DRAFT SEQUE... 36 1.9 10
(EK401828) 1095469542971 Global-Ocean-Sampling_GS-31-01-01-1... 32 1.9 4
(AC190279) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 38 2.1 11
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 2.2 21
(AL953916) Zebrafish DNA sequence from clone CH211-246I7 in ... 34 2.2 11
(CP000923) Thermoanaerobacter sp. X514, complete genome. 36 2.3 23
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 2.3 13
(EC822817) SME00009491 esmbsro2 Sawyeria marylandensis cDNA,... 38 2.3 3
(BX323463) Zebrafish DNA sequence from clone DKEY-169J7 in l... 32 2.4 10
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 36 2.8 13
(AF247143) Dictyostelium discoideum beta-COP protein mRNA, c... 32 3.0 5
(AC146821) Otolemur garnettii clone CH256-111N19, WORKING DR... 36 3.1 2
(AC115292) Mus musculus BAC clone RP23-73F10 from chromosome... 34 3.1 2
(AC209620) Mus musculus chromosome 14 clone RP24-321G17, WOR... 34 3.1 2
(AF272706) Arabidopsis thaliana BAC F7P1. 34 3.2 2
(EJ990072) 1093023042122 Global-Ocean-Sampling_GS-30-02-01-1... 36 3.3 3
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 36 3.4 24
(A93898) Sequence 4 from Patent EP0785266. 34 3.4 4
(A93868) Sequence 4 from Patent WO9726347. 34 3.4 4
(AR079110) Sequence 4 from patent US 5965416. 34 3.4 4
(AR012229) Sequence 4 from patent US 5763246. 34 3.4 4
(DL168625) Methods for Identifying the Target of a Compound ... 34 3.5 4
(DJ374360) Identification of Essential Genes in Prokaryotes. 34 3.5 4
(DD120958) STAPHYLOCOCCUS AUREUS PROTEINS AND NUCLEIC ACIDS. 34 3.5 4
(CS710689) Sequence 3229 from Patent EP1829892. 34 3.5 4
(AX620266) Sequence 3229 from Patent WO02094868. 34 3.5 4
(DL171459) Methods for Identifying the Target of a Compound ... 34 3.5 4
(DJ377194) Identification of Essential Genes in Prokaryotes. 34 3.5 4
(A93895) Sequence 1 from Patent EP0785266. 34 3.5 4
(A93865) Sequence 1 from Patent WO9726347. 34 3.5 4
(AR079109) Sequence 1 from patent US 5965416. 34 3.5 4
(AR012228) Sequence 1 from patent US 5763246. 34 3.5 4
(AM428400) Vitis vinifera contig VV78X178685.8, whole genome... 34 3.7 2
(EJ569584) 1092960023408 Global-Ocean-Sampling_GS-29-01-01-1... 40 3.7 2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 4.0 19
(EJ095185) 1095460282115 Global-Ocean-Sampling_GS-26-01-01-1... 38 4.0 2
(AC179913) Strongylocentrotus purpuratus clone R3-1003E15, W... 36 4.0 9
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 4.2 11
(EV008112) BNAEN3GH_UP_220_B06_28NOV2006_046 Brassica napus ... 36 4.3 2
(BZ958876) PgH009N22e Panax ginseng BAC library (PgH BAC) Pa... 38 4.3 3
(AY337620) Schistosoma mansoni protein kinase C type beta mR... 44 4.3 3
(AC124964) Medicago truncatula clone mth2-27c4, complete seq... 36 4.3 7
(AZ531897) ENTBP55TF Entamoeba histolytica Sheared DNA Entam... 38 4.4 3
(CP000736) Staphylococcus aureus subsp. aureus JH1, complete... 40 4.6 18
(CP000703) Staphylococcus aureus subsp. aureus JH9, complete... 40 4.6 18
(AM467271) Vitis vinifera contig VV78X041147.4, whole genome... 40 5.1 4
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 5.3 16
(AC135605) Medicago truncatula clone mth2-7m1, complete sequ... 36 5.6 7
(AL591672) Zebrafish DNA sequence from clone BUSM1-167H12 in... 32 5.7 7
(BX323879) Zebrafish DNA sequence from clone DKEY-30L21 in l... 42 5.7 8
(AC064795) Homo sapiens chromosome 3 clone RP11-785G3 map 3,... 32 6.2 9
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 36 6.3 22
(AY751740) Campylobacter jejuni strain T1016 FlaA (flaA) gen... 40 6.3 2
(AC210346) Solanum lycopersicum chromosome 7 clone C07HBa000... 36 6.3 10
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 36 6.4 19
(CT990569) Zebrafish DNA sequence from clone DKEY-33H4 in li... 46 6.4 1
(CR925797) Zebrafish DNA sequence from clone CH211-194I8 in ... 46 6.4 1
(CR847516) Zebrafish DNA sequence from clone DKEY-74J13 in l... 46 6.4 1
(BX470175) Zebrafish DNA sequence from clone DKEY-228K17 in ... 46 6.4 1
(AL672247) Mouse DNA sequence from clone RP23-95I19 on chrom... 46 6.4 1
(AL672147) Mouse DNA sequence from clone RP23-434N14 on chro... 46 6.4 1
(AC115896) Mus musculus chromosome 1, clone RP24-443M8, comp... 46 6.4 1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 46 6.4 1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN... 46 6.4 1
(AL731613) Oryza sativa genomic DNA, chromosome 4, BAC clone... 46 6.4 1
(AC210467) Oryza glaberrima clone OG_BBa0040H08, complete se... 46 6.4 1
(AC144491) Oryza sativa Japonica Group chromosome 3 clone OS... 46 6.4 1
(AC137930) Oryza sativa Japonica Group chromosome 3 clone OS... 46 6.4 1
(AC137697) Genomic sequence for Oryza sativa, Nipponbare str... 46 6.4 1
(AC126221) Oryza sativa Japonica Group chromosome 3 clone OS... 46 6.4 1
(EA717481) Sequence 96360 from patent US 7365185. 46 6.4 1
(EA705080) Sequence 83959 from patent US 7365185. 46 6.4 1
(AY293855) Homo sapiens insulin-like growth factor 2 recepto... 46 6.4 1
(AL353625) Human DNA sequence from clone RP11-288H12 on chro... 46 6.4 1
(AL137783) Human DNA sequence from clone RP5-1181K21 on chro... 46 6.4 1
(AF348209) Homo sapiens IGF2R gene, complete cds. 46 6.4 1
(AF069333) Homo sapiens insulin-like growth factor II recept... 46 6.4 1
(AC152544) Bos taurus clone CH240-5M14, WORKING DRAFT SEQUEN... 46 6.4 1
(CU633638) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.4 1
(AL929223) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 46 6.4 1
(AC223904) Bos taurus clone CH240-454I11, WORKING DRAFT SEQU... 46 6.4 1
(AC223123) Bos taurus clone CH240-428K23, WORKING DRAFT SEQU... 46 6.4 1
(AC218580) Bos taurus clone CH240-311A21, WORKING DRAFT SEQU... 46 6.4 1
(AC215998) Zea mays chromosome 3 clone ZMMBBb-595O4; ZMMBBb0... 46 6.4 1
(AC213810) Oryza glaberrima clone OG_BBa0032L21, *** SEQUENC... 46 6.4 1
(AC210919) Oryza glaberrima clone OG_BBa0062G07, *** SEQUENC... 46 6.4 1
(AC207553) Zea mays chromosome 8 clone CH201-376J19; ZMMBBc0... 46 6.4 1
(AC204326) Zea mays chromosome 2 clone CH201-174I11; ZMMBBc0... 46 6.4 1
(AC195144) Zea mays chromosome 8 clone ZMMBBb-467D9; ZMMBBb0... 46 6.4 1
(AC180660) Strongylocentrotus purpuratus clone R3-3089G24, W... 46 6.4 1
(BH155108) ENTSE89TR Entamoeba histolytica Sheared DNA Entam... 46 6.4 1
(AZ549523) ENTDR81TR Entamoeba histolytica Sheared DNA Entam... 46 6.4 1
(ET647510) JBVRN06TR JBVR Allium cepa genomic clone JBVRK_RL... 46 6.4 1
(ET644235) JBVRN06TF JBVR Allium cepa genomic clone JBVRK_RL... 46 6.4 1
(ER078773) 1095521801599 Global-Ocean-Sampling_GS-33-01-01-1... 46 6.4 1
(EK434933) 1095521026775 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.4 1
(EK394463) 1095469514593 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.4 1
(EK246421) 1095460259548 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.4 1
(EJ504762) 1095403679662 Global-Ocean-Sampling_GS-28-01-01-1... 46 6.4 1
(EJ259945) 1095349032222 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.4 1
(DH412980) Oryzias latipes Fosmid clone:GOLWFno819_m22, forw... 46 6.4 1
(DH240522) Oryzias latipes Fosmid clone:GOLWFno513_g05, forw... 46 6.4 1
(DE379275) Bombyx mori genomic DNA, BAC clone:1H5H. 46 6.4 1
(CZ547205) SRAA-aad72e02.g1 Strongyloides ratti whole genome... 46 6.4 1
(CG256442) OGHAB51TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 6.4 1
(CG256430) OGHAB51TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 6.4 1
(CN595642) TTE00010524 Normalized large Tetrahymena thermoph... 46 6.4 1
(BF446000) 7p17f10.x1 NCI_CGAP_Br22 Homo sapiens cDNA clone ... 46 6.4 1
(FF568302) TTBBG04TG Tetrahymena thermophila CU428 log phase... 46 6.4 1
(EY861339) CM30-C1-401-038-C05-CT.F Sweet lime leaf, infecte... 46 6.4 1
(AP008971) Finegoldia magna ATCC 29328 DNA, complete genome. 46 6.4 1
(AC168543) Strongylocentrotus purpuratus clone R3-3091L12, W... 34 6.4 10
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 32 6.7 17
(AF050194) Campylobacter jejuni strain L19 flagellin A (flaA... 40 6.8 2
(CU694647) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 7.2 13
(AC023956) Homo sapiens chromosome 2 clone RP11-339O18 map 2... 40 7.4 9
(AC176799) Strongylocentrotus purpuratus clone R3-3109A21, W... 34 7.9 8
(FH815092) OSB_1201004xe20r1.ab1 OSB_1201 Nicotiana tabacum ... 30 7.9 4
(EJ800294) 1093017423174 Global-Ocean-Sampling_GS-30-02-01-1... 36 9.1 3
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 38 9.1 24
(CT030700) Zebrafish DNA sequence from clone CH211-179N4 in ... 38 9.8 8
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 9.8 14

>(AF006055) Dictyostelium discoideum darlin (darA) gene, complete cds.
Length = 3204

Score = 1752 bits (884), Expect = 0.0
Identities = 884/884 (100%)
Strand = Plus / Plus


Query: 808 aggatttacaaaaagaaatattaaaagaaggatttttaaatgatttaattgaattaattg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 aggatttacaaaaagaaatattaaaagaaggatttttaaatgatttaattgaattaattg 1639


Query: 868 aagaatcaaatgtacatagagaaatgattaatcaatttgaagatgatgatattgaaaagg 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 aagaatcaaatgtacatagagaaatgattaatcaatttgaagatgatgatattgaaaagg 1699


Query: 928 ataaggatatttcaattgcaccatcaacatcagagttaatatttaaattagccgataatg 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 ataaggatatttcaattgcaccatcaacatcagagttaatatttaaattagccgataatg 1759


Query: 988 atgactatagacaatacttttataataaggaaagagatggaaacgatgcaaataacattt 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 atgactatagacaatacttttataataaggaaagagatggaaacgatgcaaataacattt 1819


Query: 1048 tggatagaatgataaaaataatgacatcaccaccaccagcctataaagatggcgatagca 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 tggatagaatgataaaaataatgacatcaccaccaccagcctataaagatggcgatagca 1879


Query: 1108 aggctcaattgaaagcattggatgttgccaaagtgaagaaaaacataacgaaaaccattg 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 aggctcaattgaaagcattggatgttgccaaagtgaagaaaaacataacgaaaaccattg 1939


Query: 1168 cattatgttcattagaggatgatgtaatcgataaattcattaaaactccaaagattttcg 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 cattatgttcattagaggatgatgtaatcgataaattcattaaaactccaaagattttcg 1999


Query: 1228 ttgatttattggtcgatactgaagacactgaaagaattgtaaatggtgaaatgatcattg 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 ttgatttattggtcgatactgaagacactgaaagaattgtaaatggtgaaatgatcattg 2059


Query: 1288 gtaatctcgcaagatccgaaccaaattgtagattattaaattcatacaatgtcattgagc 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 gtaatctcgcaagatccgaaccaaattgtagattattaaattcatacaatgtcattgagc 2119


Query: 1348 taattgctgatatcatgaaaaagtttccaaattttcaaccaattcaacatttaggtttat 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 taattgctgatatcatgaaaaagtttccaaattttcaaccaattcaacatttaggtttat 2179


Query: 1408 cttccattagaaatctcacacttccaactataaacaaaggtttcaaaccaagttcaactt 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 cttccattagaaatctcacacttccaactataaacaaaggtttcaaaccaagttcaactt 2239


Query: 1468 tgatggaagatgtagttttcaattcaaaagtacacaatcaagtcattcaattcgctgctt 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 tgatggaagatgtagttttcaattcaaaagtacacaatcaagtcattcaattcgctgctt 2299


Query: 1528 tatctttgataaagaatttcattggttgtgatcaatcaaacttaaaattattcttggaat 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 tatctttgataaagaatttcattggttgtgatcaatcaaacttaaaattattcttggaat 2359


Query: 1588 ttccaaatgctcttcaatcattattggatttagccaatggtagagtacctgcaagtatgg 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 ttccaaatgctcttcaatcattattggatttagccaatggtagagtacctgcaagtatgg 2419


Query: 1648 atgatgaatctgatcaacaagaacaattacaattagatgatgct 1691
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 atgatgaatctgatcaacaagaacaattacaattagatgatgct 2463

Score = 878 bits (443), Expect(4) = 0.0
Identities = 443/443 (100%)
Strand = Plus / Plus


Query: 95 agatacagaacattattctgaagaagcagtagagttattaattaaaaagattgataataa 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agatacagaacattattctgaagaagcagtagagttattaattaaaaagattgataataa 682


Query: 155 atcaaaagggaaaacagttattgaaagtaatacattaatttataagacattagcagattg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atcaaaagggaaaacagttattgaaagtaatacattaatttataagacattagcagattg 742


Query: 215 gtcaaaagttgaagataatagagaaacaatcattagatcaccatcaaatgtaattgaaaa 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtcaaaagttgaagataatagagaaacaatcattagatcaccatcaaatgtaattgaaaa 802


Query: 275 aacttttcaattatttgaattcttattaccaaatggcgtagaaacattaaatacagatac 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aacttttcaattatttgaattcttattaccaaatggcgtagaaacattaaatacagatac 862


Query: 335 tacagttgaacaatcagaattattttcaatggtttgtagattacttggtaatttaaccta 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tacagttgaacaatcagaattattttcaatggtttgtagattacttggtaatttaaccta 922


Query: 395 tgaaaatgcaccaaatcgtgaatttatctttgataaaactccttccattttaaaatatat 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tgaaaatgcaccaaatcgtgaatttatctttgataaaactccttccattttaaaatatat 982


Query: 455 ttcaagttttgtatctcaaacaaagtatcaatcattacaaagaacttcttgtgctgccat 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 ttcaagttttgtatctcaaacaaagtatcaatcattacaaagaacttcttgtgctgccat 1042


Query: 515 tgcaaatctttcttctgaaactg 537
|||||||||||||||||||||||
Sbjct: 1043 tgcaaatctttcttctgaaactg 1065

Score = 841 bits (424), Expect(4) = 0.0
Identities = 424/424 (100%)
Strand = Plus / Plus


Query: 1799 tatgagagtaatttatgaagcaactagattattacttagatttttagataattctgaatt 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2571 tatgagagtaatttatgaagcaactagattattacttagatttttagataattctgaatt 2630


Query: 1859 atcaaatcatcaagagaaaatgaaacaattgattgaggaatcagttgaaccattctttag 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2631 atcaaatcatcaagagaaaatgaaacaattgattgaggaatcagttgaaccattctttag 2690


Query: 1919 tttattacaatctcctttcccaattttacaagttgaaggtgcaaaaggtttagttttact 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2691 tttattacaatctcctttcccaattttacaagttgaaggtgcaaaaggtttagttttact 2750


Query: 1979 cattaaacatgataaacaactctttttatcacgtccatcatgggtaaaagatttggttga 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2751 cattaaacatgataaacaactctttttatcacgtccatcatgggtaaaagatttggttga 2810


Query: 2039 agttttatccctttcaatcattcctttccaacaactctcaagagaacaatcaacaattac 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2811 agttttatccctttcaatcattcctttccaacaactctcaagagaacaatcaacaattac 2870


Query: 2099 taccgatccaaatcatcaaaaattaattgcacaaattcaatcaaattgtaattttagtac 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2871 taccgatccaaatcatcaaaaattaattgcacaaattcaatcaaattgtaattttagtac 2930


Query: 2159 cgaacttcaaaatgttatcctttcaaatattttttacaatttctctttagatgaatcaat 2218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2931 cgaacttcaaaatgttatcctttcaaatattttttacaatttctctttagatgaatcaat 2990


Query: 2219 ttgt 2222
||||
Sbjct: 2991 ttgt 2994

Score = 537 bits (271), Expect(4) = 0.0
Identities = 271/271 (100%)
Strand = Plus / Plus


Query: 537 gattttattcaacttgaattctttaaattaggagtagtttcaattttaatcgatttaatt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 gattttattcaacttgaattctttaaattaggagtagtttcaattttaatcgatttaatt 1224


Query: 597 tgtagagaaggtacaactgatgaagttaatcaaatggcaattaaagcatttaataattta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 tgtagagaaggtacaactgatgaagttaatcaaatggcaattaaagcatttaataattta 1284


Query: 657 gttgataatgaaaatactcaagttgatattcatttcaaagaaattcatagattattagga 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gttgataatgaaaatactcaagttgatattcatttcaaagaaattcatagattattagga 1344


Query: 717 caattaaagaaatcattaaataaagaaggttattatgaaaattcattcgctaatgatttg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 caattaaagaaatcattaaataaagaaggttattatgaaaattcattcgctaatgatttg 1404


Query: 777 gtttcatcattatcaactctttctcttaata 807
|||||||||||||||||||||||||||||||
Sbjct: 1405 gtttcatcattatcaactctttctcttaata 1435

Score = 52.0 bits (26), Expect(4) = 0.0
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 71 aggtggttcacaatataaagataaag 96
||||||||||||||||||||||||||
Sbjct: 489 aggtggttcacaatataaagataaag 514

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 3,029,677,042
Number of extensions: 192022250
Number of successful extensions: 16243571
Number of sequences better than 10.0: 280
Length of query: 2503
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2478
Effective length of database: 96,311,147,814
Effective search space: 238659024283092
Effective search space used: 238659024283092
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U15928-1 (Contig-U15928-1Q) /CSM_Contig/Contig-U15928-1Q.Seq.d
(2503 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AK160989_1(AK160989|pid:none) Mus musculus 15 days embryo head c... 65 9e-09
AK172052_1(AK172052|pid:none) Mus musculus activated spleen cDNA... 64 2e-08
AY889292_1(AY889292|pid:none) Synthetic construct Homo sapiens c... 63 5e-08
BC098269_1(BC098269|pid:none) Homo sapiens RAP1, GTP-GDP dissoci... 62 8e-08
AK055032_1(AK055032|pid:none) Homo sapiens cDNA FLJ30470 fis, cl... 62 1e-07
(O93614) RecName: Full=Rap1 GTPase-GDP dissociation stimulator 1... 60 3e-07
JE0358(JE0358)ralB binding protein - clawed frog 60 3e-07
AF215923_1(AF215923|pid:none) Homo sapiens exchange factor smgGD... 60 3e-07
AJ719848_1(AJ719848|pid:none) Gallus gallus mRNA for hypothetica... 54 2e-05
AK052125_1(AK052125|pid:none) Mus musculus 12 days embryo eyebal... 51 2e-04
BC011279_1(BC011279|pid:none) Mus musculus RAP1, GTP-GDP dissoci... 50 3e-04
BC112707_1(BC112707|pid:none) Bos taurus RAP1, GTP-GDP dissociat... 50 4e-04
(Q04173) RecName: Full=Rap1 GTPase-GDP dissociation stimulator 1... 50 4e-04
BC099845_1(BC099845|pid:none) Homo sapiens RAP1, GTP-GDP dissoci... 50 5e-04
AE013599_258(AE013599|pid:none) Drosophila melanogaster chromoso... 49 9e-04
BT004891_1(BT004891|pid:none) Drosophila melanogaster RE57156 fu... 49 9e-04
AY376900_1(AY376900|pid:none) Homo sapiens GTP-GDP dissociation ... 47 0.003
CR940353_401(CR940353|pid:none) Theileria annulata strain Ankara... 47 0.004
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt... 45 0.017
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 45 0.017
BX293980_919(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 42 0.083
AF411932_1(AF411932|pid:none) Plasmodium falciparum strain Malay... 42 0.11
(Q0WUF6) RecName: Full=U-box domain-containing protein 41; ... 41 0.24
AB015469_16(AB015469|pid:none) Arabidopsis thaliana genomic DNA,... 41 0.24
AY128369_1(AY128369|pid:none) Arabidopsis thaliana putative prot... 41 0.24
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n... 40 0.32
CP001056_2156(CP001056|pid:none) Clostridium botulinum B str. Ek... 40 0.41
CP000049_431(CP000049|pid:none) Borrelia turicatae 91E135, compl... 40 0.41
CP001184_280(CP001184|pid:none) Ureaplasma urealyticum serovar 1... 40 0.41
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B... 40 0.54
CP000609_236(CP000609|pid:none) Methanococcus maripaludis C5, co... 40 0.54
CS165658_1(CS165658|pid:none) Sequence 3 from Patent WO200508545... 39 0.71
S64680(S64680)exoribonuclease 100 RNP - spinach 39 0.71
AM260522_676(AM260522|pid:none) Helicobacter acinonychis str. Sh... 39 0.92
CR932322_1(CR932322|pid:none) Paramecium tetraurelia macronuclea... 38 2.1
AM942759_939(AM942759|pid:none) Proteus mirabilis strain HI4320,... 37 2.7
BA000026_156(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 37 2.7
EU867791_1(EU867791|pid:none) Plasmodium knowlesi normocyte bind... 37 3.5
BX950851_2483(BX950851|pid:none) Erwinia carotovora subsp. atros... 37 3.5
FM992693_315(FM992693|pid:none) Candida dubliniensis CD36 chromo... 37 4.6
DQ098651_1(DQ098651|pid:none) Isatis tinctoria putative calcium-... 37 4.6
AE016830_2163(AE016830|pid:none) Enterococcus faecalis V583, com... 37 4.6
AL133248_13(AL133248|pid:none) Arabidopsis thaliana DNA chromoso... 37 4.6
(Q6NLQ6) RecName: Full=Calcium-dependent protein kinase 32; ... 37 4.6
CP000749_2548(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 36 6.0
CP000153_316(CP000153|pid:none) Sulfurimonas denitrificans DSM 1... 36 6.0
CR932323_1(CR932323|pid:none) Paramecium tetraurelia macronuclea... 36 6.0
AM180355_3301(AM180355|pid:none) Clostridium difficile 630 compl... 36 6.0
CP000048_431(CP000048|pid:none) Borrelia hermsii DAH, complete g... 36 6.0
AY145471_64(AY145471|pid:none) Rachiplusia ou multiple nucleopol... 36 6.0
BT041901_1(BT041901|pid:none) Zea mays full-length cDNA clone ZM... 36 6.0
CP001145_1091(CP001145|pid:none) Coprothermobacter proteolyticus... 36 7.8
DQ321780_1(DQ321780|pid:none) Trichomonas vaginalis strain NIH-C... 36 7.8
(Q2PMP0) RecName: Full=Putative membrane protein ycf1; ... 36 7.8
AE001273_367(AE001273|pid:none) Chlamydia trachomatis D/UW-3/CX,... 36 7.8
AL844503_62(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 36 7.8

>AK160989_1(AK160989|pid:none) Mus musculus 15 days embryo head cDNA,
RIKEN full-length enriched library, clone:4022432I18
product:RAP1, GTP-GDP dissociation stimulator 1, full
insert sequence.
Length = 606

Score = 65.5 bits (158), Expect = 9e-09
Identities = 86/428 (20%), Positives = 171/428 (39%), Gaps = 10/428 (2%)
Frame = +3

Query: 312 VETLNTDTTVEQSELFSMVCRLLGNLTYENAPNREFIFDKTPS--ILKYISSFVSQTKYQ 485
V+ LN+ + E+ R LGN+ Y++ R + + ++ ++ S +T
Sbjct: 95 VQLLNS----KDQEVLLQTGRALGNICYDSHEGRSAVDQAGGAQIVIDHLRSLCGRTDPA 150

Query: 486 S--LQRTSCAAIANLSSETDFIQLEFFKLGVVSILIDLICREGTTDEVNQMAIKAFNNLV 659
S L C + N S+E D +Q + +GV+ L+ L+ + +M + AF NL
Sbjct: 151 SEKLMTVFCGMLMNYSNENDSLQAQLISMGVIPTLVKLLGIHCHNAALTEMCLVAFGNLA 210

Query: 660 DNENTQVDIHFKEIHRLLGQLKKSLNKEGYYENSFANDLVSSLSTLSLNKDLQKEILKEG 839
+ E++ KE + + A +LV ++ K+
Sbjct: 211 ELESS---------------------KEQFASTNIAEELV--------------KLFKKQ 235

Query: 840 FLNDLIELIEESNVHREMINQFXXXXXXXXXXXSIAPSTSELIFKLADNDDYRQYFYNKE 1019
+D REMI E++ LA+ND +
Sbjct: 236 IEHD----------KREMI--------------------FEVLAPLAENDAIKLQLVEA- 264

Query: 1020 RDGNDANNILDRMIKIMTSPPPAYKDGDSKAQLKALDVAKVKKNITKTIALCSLEDDVID 1199
+++ +++I+ + K+ D VA++K + + L L D+ +
Sbjct: 265 -------GLVECLLEIVQQKVDSNKEDD---------VAELK-TASDLMVLLLLGDESMQ 307

Query: 1200 KFIKTPK--IFVDLL--VDTEDTERIVNGEMIIGNLARSEPNCRLLNSYNVIELIADIMK 1367
K + K +F +L + + + + + G + I N AR++ NC + ++E + D++
Sbjct: 308 KLFEGGKGSVFQRVLSWIPSNNHQLQLAGALAIANFARNDGNCIHMVDNGIVEKLMDLLD 367

Query: 1368 KF--PNFQPIQHLGLSSIRNLTLPTINKGFKPSSTLMEDVVFNSKVHNQVIQFAALSLIK 1541
+ +QH LS++RNL +P +NK S+ + E V+ K +QF L ++
Sbjct: 368 RHVEDGNVTVQHAALSALRNLAIPVVNKAKMLSAGVTETVLKFLKSEMPPVQFKLLGTLR 427

Query: 1542 NFIGCDQS 1565
I ++
Sbjct: 428 MLIDAQEA 435

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,054,056,364
Number of extensions: 54705288
Number of successful extensions: 160904
Number of sequences better than 10.0: 56
Number of HSP's gapped: 160795
Number of HSP's successfully gapped: 69
Length of query: 834
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 697
Effective length of database: 607,772,281
Effective search space: 423617279857
Effective search space used: 423617279857
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.46 gvh: 0.07 alm: 0.71 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U15928-1 is nuc

VS (DIR, S) 0
VH (FL, L) 7
VF (FL, S) 1
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 29
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0