Contig-U15928-1 |
Contig ID |
Contig-U15928-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2493 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
1971076 |
End point |
1968665 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
41 |
Number of EST |
72 |
Link to clone list |
U15928 |
List of clone(s) |
est1=CHF569F,1,199 est2=CHJ657F,1,565 est3=CHG878F,2,682 est4=CHN609F,2,605 est5=VHC409F,2,626 est6=CHD531F,4,625 est7=CHG144F,12,492 est8=CHM833F,13,563 est9=VHB203F,13,693 est10=CHG621F,14,624 est11=CHJ358F,14,628 est12=CHK868F,14,694 est13=CHL851F,14,605 est14=CHM720F,14,603 est15=CHN376F,14,629 est16=CHQ791F,14,652 est17=CHR291F,14,630 est18=VFB104F,14,574 est19=VHB762F,14,622 est20=VHK196F,14,603 est21=VHL181F,14,673 est22=AHQ564F,15,566 est23=CFJ429E,16,1709 est24=SFJ725F,16,671 est25=CHG475F,18,432 est26=VHD768F,19,568 est27=CHG791F,21,671 est28=CHQ524F,21,654 est29=CHR325F,21,566 est30=CHH873F,25,568 est31=CHG493F,27,559 est32=SLG152F,28,265 est33=CHK668F,131,397 est34=CHD531Z,1030,1740 est35=VFB104Z,1057,1644 est36=SLG152Z,1146,1741 est37=CHG493Z,1450,2249 est38=CHF569Z,1585,2358 est39=VHD768Z,1587,2382 est40=CHN609Z,1588,2343 est41=VHB203Z,1595,2383 est42=CHQ791Z,1601,2383 est43=CHR325Z,1602,2383 est44=CHM833Z,1628,2382 est45=CHP533Z,1628,2375 est46=CHG144Z,1629,2383 est47=CHQ524Z,1629,2383 est48=SFJ725Z,1665,2383 est49=VHA479Z,1668,2379 est50=VHB762Z,1668,2382 est51=VHL181Z,1668,2267 est52=CHG791Z,1675,2376 est53=CHR291Z,1676,2376 est54=VHC409Z,1676,2383 est55=VHK196Z,1676,2382 est56=CHL851Z,1677,2382 est57=CHG621Z,1678,2383 est58=AHQ564Z,1680,2383 est59=CHG878Z,1681,2383 est60=CHH264Z,1681,2383 est61=CHL869Z,1681,2296 est62=CHG503Z,1684,2379 est63=CHK868Z,1741,2379 est64=CHJ657Z,1748,2383 est65=CHF460Z,1751,2381 est66=CHJ358Z,1788,2282 est67=CHK884Z,1825,2383 est68=CHH873Z,1836,2359 est69=CHG475Z,1999,2358 est70=CHN376Z,2065,2358 est71=CHQ247Z,2100,2199 est72=CHM720Z,2384,2493
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 2.28 |
Homology vs DNA |
Query= Contig-U15928-1 (Contig-U15928-1Q) /CSM_Contig/Contig-U15928-1Q.Seq.d (2503 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AF006055) Dictyostelium discoideum darlin (darA) gene, comp... 1752 0.0 1 (BJ375620) Dictyostelium discoideum cDNA clone:ddc19j08, 3' ... 1493 0.0 1 (BJ376659) Dictyostelium discoideum cDNA clone:ddc29m07, 3' ... 1310 0.0 1 (BJ418523) Dictyostelium discoideum cDNA clone:ddv33e02, 5' ... 1235 0.0 1 (BJ367679) Dictyostelium discoideum cDNA clone:ddc43h18, 5' ... 1223 0.0 1 (BJ365594) Dictyostelium discoideum cDNA clone:ddc35l20, 5' ... 1201 0.0 1 (BJ365571) Dictyostelium discoideum cDNA clone:ddc35f23, 5' ... 1185 0.0 1 (BJ429317) Dictyostelium discoideum cDNA clone:ddv3g01, 3' e... 1158 0.0 1 (BJ361926) Dictyostelium discoideum cDNA clone:ddc19j08, 5' ... 1144 0.0 1 (BJ371133) Dictyostelium discoideum cDNA clone:ddc56e24, 5' ... 1104 0.0 1 (BJ419087) Dictyostelium discoideum cDNA clone:ddv35b04, 5' ... 1102 0.0 1 (BJ368986) Dictyostelium discoideum cDNA clone:ddc48h19, 5' ... 1102 0.0 1 (BJ418978) Dictyostelium discoideum cDNA clone:ddv34l15, 5' ... 1094 0.0 1 (BJ363988) Dictyostelium discoideum cDNA clone:ddc29m07, 5' ... 1094 0.0 1 (BJ366868) Dictyostelium discoideum cDNA clone:ddc40d15, 5' ... 1092 0.0 1 (BJ365367) Dictyostelium discoideum cDNA clone:ddc35i06, 5' ... 1092 0.0 1 (AU039670) Dictyostelium discoideum slug cDNA, clone SLG152. 1082 0.0 1 (BJ424832) Dictyostelium discoideum cDNA clone:ddv53a21, 5' ... 955 0.0 2 (BJ389837) Dictyostelium discoideum cDNA clone:dds20b07, 5' ... 944 0.0 2 (BJ379443) Dictyostelium discoideum cDNA clone:ddc34j24, 3' ... 815 0.0 2 (BJ370883) Dictyostelium discoideum cDNA clone:ddc55f23, 5' ... 765 0.0 2 (BJ370738) Dictyostelium discoideum cDNA clone:ddc55o05, 5' ... 765 0.0 3 (BJ368536) Dictyostelium discoideum cDNA clone:ddc47h05, 5' ... 1053 0.0 1 (BJ424283) Dictyostelium discoideum cDNA clone:ddv51o23, 5' ... 765 0.0 2 (BJ368165) Dictyostelium discoideum cDNA clone:ddc45f14, 5' ... 761 0.0 2 (BJ379047) Dictyostelium discoideum cDNA clone:ddc33i17, 3' ... 841 0.0 2 (BJ369019) Dictyostelium discoideum cDNA clone:ddc49a04, 5' ... 1019 0.0 1 (BJ438826) Dictyostelium discoideum cDNA clone:ddv38h17, 3' ... 841 0.0 2 (BJ384306) Dictyostelium discoideum cDNA clone:ddc49a04, 3' ... 841 0.0 2 (BJ437051) Dictyostelium discoideum cDNA clone:ddv33e02, 3' ... 841 0.0 2 (BJ411118) Dictyostelium discoideum cDNA clone:ddv3g01, 5' e... 999 0.0 1 (BJ385815) Dictyostelium discoideum cDNA clone:ddc56b07, 3' ... 841 0.0 2 (BJ366098) Dictyostelium discoideum cDNA clone:ddc37b20, 5' ... 983 0.0 1 (BJ339259) Dictyostelium discoideum cDNA clone:dda64o15, 5' ... 983 0.0 1 (BJ370992) Dictyostelium discoideum cDNA clone:ddc56b07, 5' ... 979 0.0 1 (BJ385688) Dictyostelium discoideum cDNA clone:ddc55f23, 3' ... 737 0.0 3 (BJ365306) Dictyostelium discoideum cDNA clone:ddc34j24, 5' ... 965 0.0 1 (BJ368573) Dictyostelium discoideum cDNA clone:ddc47b10, 5' ... 765 0.0 2 (BJ367128) Dictyostelium discoideum cDNA clone:ddc41a16, 5' ... 408 0.0 3 (BJ383493) Dictyostelium discoideum cDNA clone:ddc53a09, 3' ... 841 0.0 2 (BJ385514) Dictyostelium discoideum cDNA clone:ddc55o05, 3' ... 841 0.0 2 (BJ383795) Dictyostelium discoideum cDNA clone:ddc47b10, 3' ... 841 0.0 2 (BJ420216) Dictyostelium discoideum cDNA clone:ddv38h17, 5' ... 928 0.0 1 (BJ379279) Dictyostelium discoideum cDNA clone:ddc34g11, 3' ... 841 0.0 3 (BJ402035) Dictyostelium discoideum cDNA clone:dds20b07, 3' ... 841 0.0 2 (BJ443675) Dictyostelium discoideum cDNA clone:ddv53a21, 3' ... 841 0.0 2 (BJ385989) Dictyostelium discoideum cDNA clone:ddc56e24, 3' ... 841 0.0 2 (BJ382683) Dictyostelium discoideum cDNA clone:ddc45f14, 3' ... 841 0.0 2 (BJ437563) Dictyostelium discoideum cDNA clone:ddv34l15, 3' ... 841 0.0 2 (BJ379518) Dictyostelium discoideum cDNA clone:ddc35i06, 3' ... 841 0.0 2 (BJ382705) Dictyostelium discoideum cDNA clone:ddc45j18, 3' ... 841 0.0 2 (BJ379731) Dictyostelium discoideum cDNA clone:ddc35f23, 3' ... 833 0.0 2 (BJ382008) Dictyostelium discoideum cDNA clone:ddc43h18, 3' ... 841 0.0 1 (BJ381426) Dictyostelium discoideum cDNA clone:ddc41a16, 3' ... 841 0.0 1 (BJ379493) Dictyostelium discoideum cDNA clone:ddc35e01, 3' ... 841 0.0 1 (BJ443116) Dictyostelium discoideum cDNA clone:ddv51o23, 3' ... 833 0.0 2 (BJ437672) Dictyostelium discoideum cDNA clone:ddv35b04, 3' ... 833 0.0 2 (BJ380006) Dictyostelium discoideum cDNA clone:ddc36o16, 3' ... 833 0.0 2 (BJ365160) Dictyostelium discoideum cDNA clone:ddc34g11, 5' ... 833 0.0 1 (BJ436683) Dictyostelium discoideum cDNA clone:ddv31n20, 3' ... 729 0.0 3 (BJ379760) Dictyostelium discoideum cDNA clone:ddc35l20, 3' ... 733 0.0 2 (BJ357786) Dictyostelium discoideum cDNA clone:dda64o15, 3' ... 733 0.0 2 (BJ381150) Dictyostelium discoideum cDNA clone:ddc40d15, 3' ... 813 0.0 1 (BJ382084) Dictyostelium discoideum cDNA clone:ddc43h22, 3' ... 799 0.0 1 (BJ378711) Dictyostelium discoideum cDNA clone:ddc32h16, 3' ... 684 0.0 2 (BJ380309) Dictyostelium discoideum cDNA clone:ddc37b20, 3' ... 668 0.0 2 (BJ365282) Dictyostelium discoideum cDNA clone:ddc34f20, 5' ... 716 0.0 1 (BJ367675) Dictyostelium discoideum cDNA clone:ddc43g18, 5' ... 391 e-120 2 (BJ379420) Dictyostelium discoideum cDNA clone:ddc34f20, 3' ... 270 e-103 2 (AU061803) Dictyostelium discoideum slug cDNA, clone SLG152. 387 e-102 1 (BJ384265) Dictyostelium discoideum cDNA clone:ddc48h19, 3' ... 321 7e-83 1 (BJ364955) Dictyostelium discoideum cDNA clone:ddc33i17, 5' ... 224 1e-53 1 (BJ383745) Dictyostelium discoideum cDNA clone:ddc47h05, 3' ... 198 7e-46 1 (BJ385281) Dictyostelium discoideum cDNA clone:ddc54m12, 3' ... 155 1e-32 1 (BJ370189) Dictyostelium discoideum cDNA clone:ddc53a09, 5' ... 86 7e-12 1 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 3e-04 17 (CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 36 3e-04 22 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 40 0.008 18 (AM180355) Clostridium difficile 630 complete genome. 42 0.012 22 (AE017263) Mesoplasma florum L1 complete genome. 36 0.013 23 (CP000382) Clostridium novyi NT, complete genome. 40 0.015 22 (AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 34 0.019 11 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 0.024 16 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 0.033 21 (BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com... 34 0.033 24 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.035 20 (AP009351) Staphylococcus aureus subsp. aureus str. Newman D... 34 0.047 24 (BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com... 36 0.098 23 (AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp... 36 0.099 23 (CP000246) Clostridium perfringens ATCC 13124, complete genome. 52 0.10 1 (BA000016) Clostridium perfringens str. 13 DNA, complete gen... 52 0.10 1 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.11 14 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.13 12 (CP000046) Staphylococcus aureus subsp. aureus COL, complete... 34 0.17 23 (CU914242) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.17 9 (EJ539236) 1092955347632 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.20 2 (AE015929) Staphylococcus epidermidis ATCC 12228, complete g... 38 0.20 23 (BX571857) Staphylococcus aureus strain MSSA476, complete ge... 34 0.20 25 (EJ243222) 1095333015121 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.25 2 (BJ345523) Dictyostelium discoideum cDNA clone:dda23p20, 3' ... 38 0.25 3 (EJ567021) 1092959727063 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.26 2 (CP000939) Clostridium botulinum B1 str. Okra, complete genome. 38 0.34 24 (CZ949380) 262268 Tomato EcoRI BAC Library Solanum lycopersi... 40 0.36 3 (CQ522481) Sequence 54348 from Patent WO0160860. 50 0.41 1 (AY940097) Homo sapiens X-ray repair complementing defective... 50 0.41 1 (AC096560) Homo sapiens BAC clone RP11-241F6 from 2, complet... 50 0.41 1 (AC094085) Homo sapiens chromosome 5 clone CTD-2110K23, comp... 50 0.41 1 (AC022416) Homo sapiens chromosome 5 clone CTC-489P21, compl... 50 0.41 1 (AC099510) Homo sapiens chromosome 5 clone RP11-291L18, WORK... 50 0.41 1 (AC090073) Homo sapiens chromosome 5 clone CTD-3221I19, WORK... 50 0.41 1 (EJ614876) 1092963011050 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.41 1 (EJ454877) 1093017362455 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.41 1 (CL024751) CH216-20C18_RM1.1 CH216 Xenopus (Silurana) tropic... 50 0.41 1 (CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 34 0.51 24 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 40 0.51 20 (BX147696) Danio rerio genomic clone DKEY-104L18, genomic su... 32 0.64 4 (AM481747) Vitis vinifera contig VV78X033720.6, whole genome... 34 0.66 5 (CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 34 0.66 24 (CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 34 0.66 24 (FK172165) XABT193719.b1 Gateway compatible cien cDNA librar... 42 0.70 2 (AE017308) Mycoplasma mobile 163K complete genome. 36 0.75 22 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 0.80 20 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 38 0.83 23 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 46 0.99 18 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 1.0 20 (D82024) Dictyostelium discoideum topA gene for DNA topoisom... 38 1.0 5 (BX548174) Prochlorococcus marinus MED4 complete genome. 36 1.1 21 (BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp... 34 1.2 24 (AC170215) Bos taurus clone CH240-261B5, WORKING DRAFT SEQUE... 40 1.3 9 (EK427089) 1095516039262 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.3 3 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 1.4 18 (CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 44 1.6 21 (BX663495) Zebrafish DNA sequence from clone DKEY-116G14 in ... 48 1.6 1 (AC201519) Strongylocentrotus purpuratus clone R3-3088L20, W... 48 1.6 1 (AC201080) Strongylocentrotus purpuratus clone R3-13C4, WORK... 48 1.6 1 (AC195884) Zea mays chromosome 1 clone CH201-268C14; ZMMBBc0... 48 1.6 1 (AC184371) Strongylocentrotus purpuratus clone R3-4002P10, W... 48 1.6 1 (AC184365) Strongylocentrotus purpuratus clone R3-3122J24, W... 48 1.6 1 (AC180345) Strongylocentrotus purpuratus clone R3-3116J11, W... 48 1.6 1 (AC179191) Strongylocentrotus purpuratus clone R3-4019E5, WO... 48 1.6 1 (AC178449) Strongylocentrotus purpuratus clone R3-113B01, WO... 48 1.6 1 (AC177470) Strongylocentrotus purpuratus clone R3-61D7, WORK... 48 1.6 1 (AC177335) Strongylocentrotus purpuratus clone R3-46L21, WOR... 48 1.6 1 (AC177196) Strongylocentrotus purpuratus clone R3-4018K2, WO... 48 1.6 1 (AC177143) Strongylocentrotus purpuratus clone R3-4014O10, W... 48 1.6 1 (AC176845) Strongylocentrotus purpuratus clone R3-3120G9, WO... 48 1.6 1 (AC174112) Strongylocentrotus purpuratus clone R3-1016I17, W... 48 1.6 1 (AC172394) Strongylocentrotus purpuratus clone R3-14J24, WOR... 48 1.6 1 (DU305832) 1098448346883 CHORI-243 Ovis aries genomic clone ... 48 1.6 1 (DU277710) 1098448086933 CHORI-243 Ovis aries genomic clone ... 48 1.6 1 (CT841347) Equus caballus GSS, BAC clone CH241-12M16, SP6 en... 48 1.6 1 (CC006288) PUEAK39TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 1.6 1 (CV067522) Le_mx0_38d11_SP6 Little Skate Multiple Tissues, N... 48 1.6 1 (CP000674) Clostridium kluyveri DSM 555 plasmid pCKL555A, co... 48 1.6 1 (CP000312) Clostridium perfringens SM101, complete genome. 48 1.6 1 (AY286123) Cyanidioschyzon merolae DBV201 chloroplast, compl... 38 1.7 7 (AC152158) Medicago truncatula clone mth2-139g10, complete s... 32 1.8 9 (AC165747) Bos taurus clone CH240-165B2, WORKING DRAFT SEQUE... 36 1.9 10 (EK401828) 1095469542971 Global-Ocean-Sampling_GS-31-01-01-1... 32 1.9 4 (AC190279) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 38 2.1 11 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 2.2 21 (AL953916) Zebrafish DNA sequence from clone CH211-246I7 in ... 34 2.2 11 (CP000923) Thermoanaerobacter sp. X514, complete genome. 36 2.3 23 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 2.3 13 (EC822817) SME00009491 esmbsro2 Sawyeria marylandensis cDNA,... 38 2.3 3 (BX323463) Zebrafish DNA sequence from clone DKEY-169J7 in l... 32 2.4 10 (EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 36 2.8 13 (AF247143) Dictyostelium discoideum beta-COP protein mRNA, c... 32 3.0 5 (AC146821) Otolemur garnettii clone CH256-111N19, WORKING DR... 36 3.1 2 (AC115292) Mus musculus BAC clone RP23-73F10 from chromosome... 34 3.1 2 (AC209620) Mus musculus chromosome 14 clone RP24-321G17, WOR... 34 3.1 2 (AF272706) Arabidopsis thaliana BAC F7P1. 34 3.2 2 (EJ990072) 1093023042122 Global-Ocean-Sampling_GS-30-02-01-1... 36 3.3 3 (CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 36 3.4 24 (A93898) Sequence 4 from Patent EP0785266. 34 3.4 4 (A93868) Sequence 4 from Patent WO9726347. 34 3.4 4 (AR079110) Sequence 4 from patent US 5965416. 34 3.4 4 (AR012229) Sequence 4 from patent US 5763246. 34 3.4 4 (DL168625) Methods for Identifying the Target of a Compound ... 34 3.5 4 (DJ374360) Identification of Essential Genes in Prokaryotes. 34 3.5 4 (DD120958) STAPHYLOCOCCUS AUREUS PROTEINS AND NUCLEIC ACIDS. 34 3.5 4 (CS710689) Sequence 3229 from Patent EP1829892. 34 3.5 4 (AX620266) Sequence 3229 from Patent WO02094868. 34 3.5 4 (DL171459) Methods for Identifying the Target of a Compound ... 34 3.5 4 (DJ377194) Identification of Essential Genes in Prokaryotes. 34 3.5 4 (A93895) Sequence 1 from Patent EP0785266. 34 3.5 4 (A93865) Sequence 1 from Patent WO9726347. 34 3.5 4 (AR079109) Sequence 1 from patent US 5965416. 34 3.5 4 (AR012228) Sequence 1 from patent US 5763246. 34 3.5 4 (AM428400) Vitis vinifera contig VV78X178685.8, whole genome... 34 3.7 2 (EJ569584) 1092960023408 Global-Ocean-Sampling_GS-29-01-01-1... 40 3.7 2 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 4.0 19 (EJ095185) 1095460282115 Global-Ocean-Sampling_GS-26-01-01-1... 38 4.0 2 (AC179913) Strongylocentrotus purpuratus clone R3-1003E15, W... 36 4.0 9 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 4.2 11 (EV008112) BNAEN3GH_UP_220_B06_28NOV2006_046 Brassica napus ... 36 4.3 2 (BZ958876) PgH009N22e Panax ginseng BAC library (PgH BAC) Pa... 38 4.3 3 (AY337620) Schistosoma mansoni protein kinase C type beta mR... 44 4.3 3 (AC124964) Medicago truncatula clone mth2-27c4, complete seq... 36 4.3 7 (AZ531897) ENTBP55TF Entamoeba histolytica Sheared DNA Entam... 38 4.4 3 (CP000736) Staphylococcus aureus subsp. aureus JH1, complete... 40 4.6 18 (CP000703) Staphylococcus aureus subsp. aureus JH9, complete... 40 4.6 18 (AM467271) Vitis vinifera contig VV78X041147.4, whole genome... 40 5.1 4 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 5.3 16 (AC135605) Medicago truncatula clone mth2-7m1, complete sequ... 36 5.6 7 (AL591672) Zebrafish DNA sequence from clone BUSM1-167H12 in... 32 5.7 7 (BX323879) Zebrafish DNA sequence from clone DKEY-30L21 in l... 42 5.7 8 (AC064795) Homo sapiens chromosome 3 clone RP11-785G3 map 3,... 32 6.2 9 (AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 36 6.3 22 (AY751740) Campylobacter jejuni strain T1016 FlaA (flaA) gen... 40 6.3 2 (AC210346) Solanum lycopersicum chromosome 7 clone C07HBa000... 36 6.3 10 (CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 36 6.4 19 (CT990569) Zebrafish DNA sequence from clone DKEY-33H4 in li... 46 6.4 1 (CR925797) Zebrafish DNA sequence from clone CH211-194I8 in ... 46 6.4 1 (CR847516) Zebrafish DNA sequence from clone DKEY-74J13 in l... 46 6.4 1 (BX470175) Zebrafish DNA sequence from clone DKEY-228K17 in ... 46 6.4 1 (AL672247) Mouse DNA sequence from clone RP23-95I19 on chrom... 46 6.4 1 (AL672147) Mouse DNA sequence from clone RP23-434N14 on chro... 46 6.4 1 (AC115896) Mus musculus chromosome 1, clone RP24-443M8, comp... 46 6.4 1 (AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 46 6.4 1 (AP008209) Oryza sativa (japonica cultivar-group) genomic DN... 46 6.4 1 (AL731613) Oryza sativa genomic DNA, chromosome 4, BAC clone... 46 6.4 1 (AC210467) Oryza glaberrima clone OG_BBa0040H08, complete se... 46 6.4 1 (AC144491) Oryza sativa Japonica Group chromosome 3 clone OS... 46 6.4 1 (AC137930) Oryza sativa Japonica Group chromosome 3 clone OS... 46 6.4 1 (AC137697) Genomic sequence for Oryza sativa, Nipponbare str... 46 6.4 1 (AC126221) Oryza sativa Japonica Group chromosome 3 clone OS... 46 6.4 1 (EA717481) Sequence 96360 from patent US 7365185. 46 6.4 1 (EA705080) Sequence 83959 from patent US 7365185. 46 6.4 1 (AY293855) Homo sapiens insulin-like growth factor 2 recepto... 46 6.4 1 (AL353625) Human DNA sequence from clone RP11-288H12 on chro... 46 6.4 1 (AL137783) Human DNA sequence from clone RP5-1181K21 on chro... 46 6.4 1 (AF348209) Homo sapiens IGF2R gene, complete cds. 46 6.4 1 (AF069333) Homo sapiens insulin-like growth factor II recept... 46 6.4 1 (AC152544) Bos taurus clone CH240-5M14, WORKING DRAFT SEQUEN... 46 6.4 1 (CU633638) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.4 1 (AL929223) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 46 6.4 1 (AC223904) Bos taurus clone CH240-454I11, WORKING DRAFT SEQU... 46 6.4 1 (AC223123) Bos taurus clone CH240-428K23, WORKING DRAFT SEQU... 46 6.4 1 (AC218580) Bos taurus clone CH240-311A21, WORKING DRAFT SEQU... 46 6.4 1 (AC215998) Zea mays chromosome 3 clone ZMMBBb-595O4; ZMMBBb0... 46 6.4 1 (AC213810) Oryza glaberrima clone OG_BBa0032L21, *** SEQUENC... 46 6.4 1 (AC210919) Oryza glaberrima clone OG_BBa0062G07, *** SEQUENC... 46 6.4 1 (AC207553) Zea mays chromosome 8 clone CH201-376J19; ZMMBBc0... 46 6.4 1 (AC204326) Zea mays chromosome 2 clone CH201-174I11; ZMMBBc0... 46 6.4 1 (AC195144) Zea mays chromosome 8 clone ZMMBBb-467D9; ZMMBBb0... 46 6.4 1 (AC180660) Strongylocentrotus purpuratus clone R3-3089G24, W... 46 6.4 1 (BH155108) ENTSE89TR Entamoeba histolytica Sheared DNA Entam... 46 6.4 1 (AZ549523) ENTDR81TR Entamoeba histolytica Sheared DNA Entam... 46 6.4 1 (ET647510) JBVRN06TR JBVR Allium cepa genomic clone JBVRK_RL... 46 6.4 1 (ET644235) JBVRN06TF JBVR Allium cepa genomic clone JBVRK_RL... 46 6.4 1 (ER078773) 1095521801599 Global-Ocean-Sampling_GS-33-01-01-1... 46 6.4 1 (EK434933) 1095521026775 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.4 1 (EK394463) 1095469514593 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.4 1 (EK246421) 1095460259548 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.4 1 (EJ504762) 1095403679662 Global-Ocean-Sampling_GS-28-01-01-1... 46 6.4 1 (EJ259945) 1095349032222 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.4 1 (DH412980) Oryzias latipes Fosmid clone:GOLWFno819_m22, forw... 46 6.4 1 (DH240522) Oryzias latipes Fosmid clone:GOLWFno513_g05, forw... 46 6.4 1 (DE379275) Bombyx mori genomic DNA, BAC clone:1H5H. 46 6.4 1 (CZ547205) SRAA-aad72e02.g1 Strongyloides ratti whole genome... 46 6.4 1 (CG256442) OGHAB51TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 6.4 1 (CG256430) OGHAB51TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 6.4 1 (CN595642) TTE00010524 Normalized large Tetrahymena thermoph... 46 6.4 1 (BF446000) 7p17f10.x1 NCI_CGAP_Br22 Homo sapiens cDNA clone ... 46 6.4 1 (FF568302) TTBBG04TG Tetrahymena thermophila CU428 log phase... 46 6.4 1 (EY861339) CM30-C1-401-038-C05-CT.F Sweet lime leaf, infecte... 46 6.4 1 (AP008971) Finegoldia magna ATCC 29328 DNA, complete genome. 46 6.4 1 (AC168543) Strongylocentrotus purpuratus clone R3-3091L12, W... 34 6.4 10 (AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 32 6.7 17 (AF050194) Campylobacter jejuni strain L19 flagellin A (flaA... 40 6.8 2 (CU694647) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 7.2 13 (AC023956) Homo sapiens chromosome 2 clone RP11-339O18 map 2... 40 7.4 9 (AC176799) Strongylocentrotus purpuratus clone R3-3109A21, W... 34 7.9 8 (FH815092) OSB_1201004xe20r1.ab1 OSB_1201 Nicotiana tabacum ... 30 7.9 4 (EJ800294) 1093017423174 Global-Ocean-Sampling_GS-30-02-01-1... 36 9.1 3 (CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 38 9.1 24 (CT030700) Zebrafish DNA sequence from clone CH211-179N4 in ... 38 9.8 8 (AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 9.8 14
>(AF006055) Dictyostelium discoideum darlin (darA) gene, complete cds. Length = 3204
Score = 1752 bits (884), Expect = 0.0 Identities = 884/884 (100%) Strand = Plus / Plus
Query: 808 aggatttacaaaaagaaatattaaaagaaggatttttaaatgatttaattgaattaattg 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1580 aggatttacaaaaagaaatattaaaagaaggatttttaaatgatttaattgaattaattg 1639
Query: 868 aagaatcaaatgtacatagagaaatgattaatcaatttgaagatgatgatattgaaaagg 927 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1640 aagaatcaaatgtacatagagaaatgattaatcaatttgaagatgatgatattgaaaagg 1699
Query: 928 ataaggatatttcaattgcaccatcaacatcagagttaatatttaaattagccgataatg 987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1700 ataaggatatttcaattgcaccatcaacatcagagttaatatttaaattagccgataatg 1759
Query: 988 atgactatagacaatacttttataataaggaaagagatggaaacgatgcaaataacattt 1047 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1760 atgactatagacaatacttttataataaggaaagagatggaaacgatgcaaataacattt 1819
Query: 1048 tggatagaatgataaaaataatgacatcaccaccaccagcctataaagatggcgatagca 1107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1820 tggatagaatgataaaaataatgacatcaccaccaccagcctataaagatggcgatagca 1879
Query: 1108 aggctcaattgaaagcattggatgttgccaaagtgaagaaaaacataacgaaaaccattg 1167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1880 aggctcaattgaaagcattggatgttgccaaagtgaagaaaaacataacgaaaaccattg 1939
Query: 1168 cattatgttcattagaggatgatgtaatcgataaattcattaaaactccaaagattttcg 1227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1940 cattatgttcattagaggatgatgtaatcgataaattcattaaaactccaaagattttcg 1999
Query: 1228 ttgatttattggtcgatactgaagacactgaaagaattgtaaatggtgaaatgatcattg 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2000 ttgatttattggtcgatactgaagacactgaaagaattgtaaatggtgaaatgatcattg 2059
Query: 1288 gtaatctcgcaagatccgaaccaaattgtagattattaaattcatacaatgtcattgagc 1347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2060 gtaatctcgcaagatccgaaccaaattgtagattattaaattcatacaatgtcattgagc 2119
Query: 1348 taattgctgatatcatgaaaaagtttccaaattttcaaccaattcaacatttaggtttat 1407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2120 taattgctgatatcatgaaaaagtttccaaattttcaaccaattcaacatttaggtttat 2179
Query: 1408 cttccattagaaatctcacacttccaactataaacaaaggtttcaaaccaagttcaactt 1467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2180 cttccattagaaatctcacacttccaactataaacaaaggtttcaaaccaagttcaactt 2239
Query: 1468 tgatggaagatgtagttttcaattcaaaagtacacaatcaagtcattcaattcgctgctt 1527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2240 tgatggaagatgtagttttcaattcaaaagtacacaatcaagtcattcaattcgctgctt 2299
Query: 1528 tatctttgataaagaatttcattggttgtgatcaatcaaacttaaaattattcttggaat 1587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2300 tatctttgataaagaatttcattggttgtgatcaatcaaacttaaaattattcttggaat 2359
Query: 1588 ttccaaatgctcttcaatcattattggatttagccaatggtagagtacctgcaagtatgg 1647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2360 ttccaaatgctcttcaatcattattggatttagccaatggtagagtacctgcaagtatgg 2419
Query: 1648 atgatgaatctgatcaacaagaacaattacaattagatgatgct 1691 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2420 atgatgaatctgatcaacaagaacaattacaattagatgatgct 2463
Score = 878 bits (443), Expect(4) = 0.0 Identities = 443/443 (100%) Strand = Plus / Plus
Query: 95 agatacagaacattattctgaagaagcagtagagttattaattaaaaagattgataataa 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 623 agatacagaacattattctgaagaagcagtagagttattaattaaaaagattgataataa 682
Query: 155 atcaaaagggaaaacagttattgaaagtaatacattaatttataagacattagcagattg 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 683 atcaaaagggaaaacagttattgaaagtaatacattaatttataagacattagcagattg 742
Query: 215 gtcaaaagttgaagataatagagaaacaatcattagatcaccatcaaatgtaattgaaaa 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 743 gtcaaaagttgaagataatagagaaacaatcattagatcaccatcaaatgtaattgaaaa 802
Query: 275 aacttttcaattatttgaattcttattaccaaatggcgtagaaacattaaatacagatac 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 803 aacttttcaattatttgaattcttattaccaaatggcgtagaaacattaaatacagatac 862
Query: 335 tacagttgaacaatcagaattattttcaatggtttgtagattacttggtaatttaaccta 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 863 tacagttgaacaatcagaattattttcaatggtttgtagattacttggtaatttaaccta 922
Query: 395 tgaaaatgcaccaaatcgtgaatttatctttgataaaactccttccattttaaaatatat 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 923 tgaaaatgcaccaaatcgtgaatttatctttgataaaactccttccattttaaaatatat 982
Query: 455 ttcaagttttgtatctcaaacaaagtatcaatcattacaaagaacttcttgtgctgccat 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 983 ttcaagttttgtatctcaaacaaagtatcaatcattacaaagaacttcttgtgctgccat 1042
Query: 515 tgcaaatctttcttctgaaactg 537 ||||||||||||||||||||||| Sbjct: 1043 tgcaaatctttcttctgaaactg 1065
Score = 841 bits (424), Expect(4) = 0.0 Identities = 424/424 (100%) Strand = Plus / Plus
Query: 1799 tatgagagtaatttatgaagcaactagattattacttagatttttagataattctgaatt 1858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2571 tatgagagtaatttatgaagcaactagattattacttagatttttagataattctgaatt 2630
Query: 1859 atcaaatcatcaagagaaaatgaaacaattgattgaggaatcagttgaaccattctttag 1918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2631 atcaaatcatcaagagaaaatgaaacaattgattgaggaatcagttgaaccattctttag 2690
Query: 1919 tttattacaatctcctttcccaattttacaagttgaaggtgcaaaaggtttagttttact 1978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2691 tttattacaatctcctttcccaattttacaagttgaaggtgcaaaaggtttagttttact 2750
Query: 1979 cattaaacatgataaacaactctttttatcacgtccatcatgggtaaaagatttggttga 2038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2751 cattaaacatgataaacaactctttttatcacgtccatcatgggtaaaagatttggttga 2810
Query: 2039 agttttatccctttcaatcattcctttccaacaactctcaagagaacaatcaacaattac 2098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2811 agttttatccctttcaatcattcctttccaacaactctcaagagaacaatcaacaattac 2870
Query: 2099 taccgatccaaatcatcaaaaattaattgcacaaattcaatcaaattgtaattttagtac 2158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2871 taccgatccaaatcatcaaaaattaattgcacaaattcaatcaaattgtaattttagtac 2930
Query: 2159 cgaacttcaaaatgttatcctttcaaatattttttacaatttctctttagatgaatcaat 2218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2931 cgaacttcaaaatgttatcctttcaaatattttttacaatttctctttagatgaatcaat 2990
Query: 2219 ttgt 2222 |||| Sbjct: 2991 ttgt 2994
Score = 537 bits (271), Expect(4) = 0.0 Identities = 271/271 (100%) Strand = Plus / Plus
Query: 537 gattttattcaacttgaattctttaaattaggagtagtttcaattttaatcgatttaatt 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 gattttattcaacttgaattctttaaattaggagtagtttcaattttaatcgatttaatt 1224
Query: 597 tgtagagaaggtacaactgatgaagttaatcaaatggcaattaaagcatttaataattta 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 tgtagagaaggtacaactgatgaagttaatcaaatggcaattaaagcatttaataattta 1284
Query: 657 gttgataatgaaaatactcaagttgatattcatttcaaagaaattcatagattattagga 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285 gttgataatgaaaatactcaagttgatattcatttcaaagaaattcatagattattagga 1344
Query: 717 caattaaagaaatcattaaataaagaaggttattatgaaaattcattcgctaatgatttg 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1345 caattaaagaaatcattaaataaagaaggttattatgaaaattcattcgctaatgatttg 1404
Query: 777 gtttcatcattatcaactctttctcttaata 807 ||||||||||||||||||||||||||||||| Sbjct: 1405 gtttcatcattatcaactctttctcttaata 1435
Score = 52.0 bits (26), Expect(4) = 0.0 Identities = 26/26 (100%) Strand = Plus / Plus
Query: 71 aggtggttcacaatataaagataaag 96 |||||||||||||||||||||||||| Sbjct: 489 aggtggttcacaatataaagataaag 514
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 3,029,677,042 Number of extensions: 192022250 Number of successful extensions: 16243571 Number of sequences better than 10.0: 280 Length of query: 2503 Length of database: 98,766,808,389 Length adjustment: 25 Effective length of query: 2478 Effective length of database: 96,311,147,814 Effective search space: 238659024283092 Effective search space used: 238659024283092 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.19 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
7 |
VF (FL, S) |
1 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
29 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |