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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15920-1
Contig ID Contig-U15920-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15920-1 (Contig-U15920-1Q) /CSM_Contig/Contig-U15920-1Q.Seq.d
CTGTTGGCCTACTGGAAAAAATATATTTAAATTTTTCTAATTATCAAACA
AATAAAAAAATTATTAATTATTTATTATAAAAAATGTTTTTATAAAATAA
AATAATACAGAAAAAAAAAAAAAAATTTTNTAAAAANCCTTTCNCATTTA
AAAAAAAAA----------AAAGTCACAGGCTCCATCCATTACTTTTAAG
AGTTTGGATCAATTTATAAAATATTTAGAAGAGAATAACTGTGTTGATGA
TATCGAAGTTTCTCCATGCTCAAAGTCCCATACATTCAATAGACCAGTTT
CAACACCACGTCTAATTATTAAACCAACATGGTGTGTCTATGGTGACTCA
TTAAATACTGAATTCTTCCACTCTTGTCTAAAGGATAAAACATGTGGTGA
TATTATTGTGGACCACTTTGAGCCATTGGTCTCCTCACCAACAGACTTTT
TATTATCAAATGGTGGCCAAAGAATTTTAGATACACCAAATGCTGGTGGT
TCATCCGTTTGGTCAGAGGTATTATCATTTGAAGTATTAAATCAAGTTTT
TGGTGCACAATTAAAGAAAACTGAAACTGAAATTGAATATGCTCCAGGTT
CAAAAATTACAGATTTCTCTGTTGATATTAACAATAGTCATATTGGAGTT
TCTGTGGTAAGAATAATTAACTTTTTCGATCTCAATGGAAGAACGTACAA
AGCTGTTTTCACACCAGAATATGCTCGAAATCTTTTGTACAAAAAGTTAT
TTGGTGTCATTGCCTCCACTGAAGCGGTTGTTGATAAATGGGAAAAACAA
ATTCTTTATGTTTGGACTACATCTTCTTGTGTCGCCGATATAATTGTTCA
AGAATATTGGAAAGTTCCAGCAAAGTTAAGATCAAATACTTTAGTTTATG
TTAATCATGCAACAAACTCTGAATTTTTATTTTAATAATAAAAAATAAAA
AAAATAAAAAAAATAATAAATGTACATTTAAAATTTAATAAAATAAAAAA
AAAA
Gap gap included
Contig length 994
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 195218
End point 196196
Strand (PLUS/MINUS) PLUS
Number of clones 12
Number of EST 19
Link to clone list U15920
List of clone(s) 

est1=CHP513F,1,159
est2=CHJ652F,16,159
est3=CHK543F,16,159
est4=CHN870F,16,159
est5=CHM703F,18,159
est6=CHR205F,18,159
est7=CHG169F,23,159
est8=CHR205Z,160,908
est9=CHN870Z,252,957
est10=CHP513Z,252,707
est11=CFA442Z,253,955
est12=VHI254Z,256,991
est13=CHO263Z,262,843
est14=AHK196Z,308,864
est15=CHJ652Z,374,747
est16=CHM703Z,410,978
est17=CHK543Z,428,961
est18=VSJ673F,506,995
est19=VSJ673Z,506,979
Translated Amino Acid sequence 
vgllekiylnfsnyqtnkkiinyll*kmfl*NKIIQKKKKKFXKXPFXFKKK---

---KSQAPSITFKSLDQFIKYLEENNCVDDIEVSPCSKSHTFNRPVSTPRLIIKPTWCVY
GDSLNTEFFHSCLKDKTCGDIIVDHFEPLVSSPTDFLLSNGGQRILDTPNAGGSSVWSEV
LSFEVLNQVFGAQLKKTETEIEYAPGSKITDFSVDINNSHIGVSVVRIINFFDLNGRTYK
AVFTPEYARNLLYKKLFGVIASTEAVVDKWEKQILYVWTTSSCVADIIVQEYWKVPAKLR
SNTLVYVNHATNSEFLF***kikkikkiinvhlkfnkikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywkkyi*ifliikqikklliiyykkcfykik*yrkkkknfxkxlshlkkk---

---kvtgsihyf*efgsiykifrre*lc**yrsfsmlkvpyiq*tsfnttsny*tnmvcl
w*liky*ilpllskg*nmw*yycgpl*aiglltnrlfiikwwpknfrytkcwwfirlvrg
iii*sikssfwctiken*n*n*icsrfknyrflc*y*q*sywsfcgknn*lfrsqwknvq
scfhtricsksfvqkviwchclh*sgc**mgktnslcldyiflcrryncsrilessskvk
ikyfslc*scnkl*ifiliiknkknkknnkctfki**nkkk

Frame B:
cwptgknifkff*lsnk*kny*lfiiknvfik*nntekkkkix*kxfxi*kk---

---KSQAPSITFKSLDQFIKYLEENNCVDDIEVSPCSKSHTFNRPVSTPRLIIKPTWCVY
GDSLNTEFFHSCLKDKTCGDIIVDHFEPLVSSPTDFLLSNGGQRILDTPNAGGSSVWSEV
LSFEVLNQVFGAQLKKTETEIEYAPGSKITDFSVDINNSHIGVSVVRIINFFDLNGRTYK
AVFTPEYARNLLYKKLFGVIASTEAVVDKWEKQILYVWTTSSCVADIIVQEYWKVPAKLR
SNTLVYVNHATNSEFLF***kikkikkiinvhlkfnkikkk

Frame C:
vgllekiylnfsnyqtnkkiinyll*kmfl*NKIIQKKKKKFXKXPFXFKKK---

---shrlhplllrvwinl*ni*kritvlmiskflhaqspihsidqfqhhv*llnqhgvsm
vth*ilnsstlv*rikhvvillwttlshwsphqqtfyyqmvakef*ihqmlvvhpfgqry
yhlky*ikflvhn*rklklklnmlqvqklqislliltivileflw*e*ltfsismeertk
lfshqnmleifctksylvslpplkrllingknkffmfglhllvspi*lfknigkfqqs*d
qil*fmlimqqtlnfyfnnkk*kk*kk**myi*nlik*kk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15920-1 (Contig-U15920-1Q)
/CSM_Contig/Contig-U15920-1Q.Seq.d
         (1004 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15920-1 (Contig-U15920-1Q) /CSM_Contig/Conti...  1526  0.0
Contig-U16509-1 (Contig-U16509-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U16273-1 (Contig-U16273-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U16507-1 (Contig-U16507-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U16168-1 (Contig-U16168-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15764-1 (Contig-U15764-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15717-1 (Contig-U15717-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15642-1 (Contig-U15642-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U09690-1 (Contig-U09690-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15664-1 (Contig-U15664-1Q) /CSM_Contig/Conti...    36  0.10

>Contig-U15920-1 (Contig-U15920-1Q) /CSM_Contig/Contig-U15920-1Q.Seq.d
          Length = 1004

 Score = 1526 bits (770), Expect = 0.0
 Identities = 770/770 (100%)
 Strand = Plus / Plus

                                                                       
Query: 170 aaagtcacaggctccatccattacttttaagagtttggatcaatttataaaatatttaga 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aaagtcacaggctccatccattacttttaagagtttggatcaatttataaaatatttaga 229

                                                                       
Query: 230 agagaataactgtgttgatgatatcgaagtttctccatgctcaaagtcccatacattcaa 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 agagaataactgtgttgatgatatcgaagtttctccatgctcaaagtcccatacattcaa 289

                                                                       
Query: 290 tagaccagtttcaacaccacgtctaattattaaaccaacatggtgtgtctatggtgactc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tagaccagtttcaacaccacgtctaattattaaaccaacatggtgtgtctatggtgactc 349

                                                                       
Query: 350 attaaatactgaattcttccactcttgtctaaaggataaaacatgtggtgatattattgt 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 attaaatactgaattcttccactcttgtctaaaggataaaacatgtggtgatattattgt 409

                                                                       
Query: 410 ggaccactttgagccattggtctcctcaccaacagactttttattatcaaatggtggcca 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggaccactttgagccattggtctcctcaccaacagactttttattatcaaatggtggcca 469

                                                                       
Query: 470 aagaattttagatacaccaaatgctggtggttcatccgtttggtcagaggtattatcatt 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aagaattttagatacaccaaatgctggtggttcatccgtttggtcagaggtattatcatt 529

                                                                       
Query: 530 tgaagtattaaatcaagtttttggtgcacaattaaagaaaactgaaactgaaattgaata 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgaagtattaaatcaagtttttggtgcacaattaaagaaaactgaaactgaaattgaata 589

                                                                       
Query: 590 tgctccaggttcaaaaattacagatttctctgttgatattaacaatagtcatattggagt 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgctccaggttcaaaaattacagatttctctgttgatattaacaatagtcatattggagt 649

                                                                       
Query: 650 ttctgtggtaagaataattaactttttcgatctcaatggaagaacgtacaaagctgtttt 709
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttctgtggtaagaataattaactttttcgatctcaatggaagaacgtacaaagctgtttt 709

                                                                       
Query: 710 cacaccagaatatgctcgaaatcttttgtacaaaaagttatttggtgtcattgcctccac 769
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cacaccagaatatgctcgaaatcttttgtacaaaaagttatttggtgtcattgcctccac 769

                                                                       
Query: 770 tgaagcggttgttgataaatgggaaaaacaaattctttatgtttggactacatcttcttg 829
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tgaagcggttgttgataaatgggaaaaacaaattctttatgtttggactacatcttcttg 829

                                                                       
Query: 830 tgtcgccgatataattgttcaagaatattggaaagttccagcaaagttaagatcaaatac 889
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tgtcgccgatataattgttcaagaatattggaaagttccagcaaagttaagatcaaatac 889

                                                             
Query: 890 tttagtttatgttaatcatgcaacaaactctgaatttttattttaataat 939
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tttagtttatgttaatcatgcaacaaactctgaatttttattttaataat 939


 Score = 73.8 bits (37), Expect = 5e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 1  ctgttggcctactggaaaaaatatatttaaatttttc 37
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctgttggcctactggaaaaaatatatttaaatttttc 37


>Contig-U16509-1 (Contig-U16509-1Q) /CSM_Contig/Contig-U16509-1Q.Seq.d
          Length = 2872

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 1   ctgttggcctactggaaaaaatat 24
           ||||||||||||||||||||||||
Sbjct: 654 ctgttggcctactggaaaaaatat 677


 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   ctgttggcctactggaaaaa 20
           ||||||||||||||||||||
Sbjct: 154 ctgttggcctactggaaaaa 173


>Contig-U16273-1 (Contig-U16273-1Q) /CSM_Contig/Contig-U16273-1Q.Seq.d
          Length = 1770

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ctgttggcctactggaaaaaata 23
          |||||||||||||||||||||||
Sbjct: 2  ctgttggcctactggaaaaaata 24


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,092
Number of Sequences: 8402
Number of extensions: 20092
Number of successful extensions: 2602
Number of sequences better than 10.0: 848
length of query: 1004
length of database: 8,075,542
effective HSP length: 16
effective length of query: 988
effective length of database: 7,941,110
effective search space: 7845816680
effective search space used: 7845816680
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 2.28
Homology vs DNA 
Query= Contig-U15920-1 (Contig-U15920-1Q) /CSM_Contig/Contig-U15920-1Q.Seq.d
         (1004 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ385774) Dictyostelium discoideum cDNA clone:ddc56i02, 3' ...  1439   0.0    2
(BJ371740) Dictyostelium discoideum cDNA clone:ddc1d12, 3' e...  1326   0.0    1
(BJ441721) Dictyostelium discoideum cDNA clone:ddv47k14, 3' ...  1312   0.0    1
(BJ384493) Dictyostelium discoideum cDNA clone:ddc49l18, 3' ...  1273   0.0    2
(BJ384777) Dictyostelium discoideum cDNA clone:ddc50m16, 3' ...  1152   0.0    1
(BJ353932) Dictyostelium discoideum cDNA clone:dda51o23, 3' ...  1104   0.0    1
(BJ381905) Dictyostelium discoideum cDNA clone:ddc43e11, 3' ...   985   0.0    1
(BJ383463) Dictyostelium discoideum cDNA clone:ddc53i03, 3' ...   898   0.0    1
(BJ383731) Dictyostelium discoideum cDNA clone:ddc47f01, 3' ...   724   0.0    4
(AU270297) Dictyostelium discoideum vegetative cDNA clone:VS...   825   0.0    1
(AU270296) Dictyostelium discoideum vegetative cDNA clone:VS...   741   0.0    2
(BJ381456) Dictyostelium discoideum cDNA clone:ddc41g14, 3' ...   733   0.0    1
(AC220080) Bos taurus clone CH240-361O7, WORKING DRAFT SEQUE...    44   1.6    2
(BX470078) Zebrafish DNA sequence from clone DKEYP-8C4 in li...    46   2.5    1
(BX294169) Zebrafish DNA sequence from clone DKEY-151N15 in ...    46   2.5    1
(AM448850) Vitis vinifera contig VV78X048873.6, whole genome...    46   2.5    1
(BX901945) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.5    1
(ER507980) 1093015429321 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.5    1
(ER454747) 1092963863898 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.5    1
(EK319336) 1095462424036 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.5    1
(EK268193) 1095462242082 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.5    1
(AC126852) Rattus norvegicus clone CH230-23C6, *** SEQUENCIN...    38   3.4    5
(AC137064) Oryza sativa Japonica Group chromosome 11 clone O...    38   3.4    5
(BJ415624) Dictyostelium discoideum cDNA clone:ddv23m05, 5' ...    38   6.2    2
(AC099255) Rattus norvegicus clone CH230-172C12, *** SEQUENC...    42   6.7    4
(BV243957) S234P6528FD7.T0 EnglishShepherd Canis familiaris ...    44   10.0   1
(EF103588) Nosema bombycis Sec61gamma (Sec61gamma) gene, com...    44   10.0   1
(AM474426) Vitis vinifera contig VV78X074034.2, whole genome...    44   10.0   1
(AC150032) Rhinolophus ferrumequinum clone VMRC7-372J13, com...    44   10.0   1
(EU814525) Apidae sp. MorondavaA elongation factor-1 alpha (...    44   10.0   1
(EU358939) Schizaphis scirpi elongation factor 1 alpha gene,...    44   10.0   1
(EU358938) Schizaphis graminum elongation factor 1 alpha gen...    44   10.0   1
(EU358933) Myzus persicae elongation factor 1 alpha gene, pa...    44   10.0   1
(EU358926) Aphis sumire elongation factor 1 alpha gene, part...    44   10.0   1
(EU358920) Aphis nerii elongation factor 1 alpha gene, parti...    44   10.0   1
(EU358912) Aphis gossypii elongation factor 1 alpha gene, pa...    44   10.0   1
(EU358905) Aphis craccivora elongation factor 1 alpha gene, ...    44   10.0   1
(EU019877) Aphis gossypii from Celastrus orbiculatus elongat...    44   10.0   1
(EU019869) Aphis gossypii from Hibiscus elongation factor 1 ...    44   10.0   1
(EU019868) Aphis gossypii from Hibiscus mutabilis elongation...    44   10.0   1
(EF660855) Myzus persicae isolate F001 lineage (green) elong...    44   10.0   1
(EF660854) Myzus persicae isolate G006 lineage (green) elong...    44   10.0   1
(EF660853) Myzus persicae isolate USDA tobacco adapted linea...    44   10.0   1
(EF640162) Aphis gossypii isolate Nanjing population elongat...    44   10.0   1
(EF419316) Aphis craccivora isolate Nanjing population elong...    44   10.0   1
(EF419315) Myzus persicae isolate Fuzhou population elongati...    44   10.0   1
(EF419314) Myzus persicae isolate He-Ze population elongatio...    44   10.0   1
(EF419313) Myzus persicae isolate Nanjing population elongat...    44   10.0   1
(EF419312) Myzus persicae isolate Xi-An population elongatio...    44   10.0   1
(DQ149721) Halterapis seyrigi elongation factor-1 alpha (EF-...    44   10.0   1
(DQ149718) Brevineura elongata elongation factor-1 alpha (EF...    44   10.0   1
(DQ149717) Brevineura xanthoclypeata elongation factor-1 alp...    44   10.0   1
(DQ149716) Inquilina sp. Adelaide elongation factor-1 alpha ...    44   10.0   1
(DQ149715) Inquilina schwarzi elongation factor-1 alpha (EF-...    44   10.0   1
(DQ149714) Inquilina excavata elongation factor-1 alpha (EF-...    44   10.0   1
(DQ149709) Exoneura sp. Adelaide elongation factor-1 alpha (...    44   10.0   1
(DQ149708) Exoneura sp. Tasmania elongation factor-1 alpha (...    44   10.0   1
(DQ149707) Exoneura nigrescens elongation factor-1 alpha (EF...    44   10.0   1
(DQ149706) Exoneura robusta elongation factor-1 alpha (EF-1a...    44   10.0   1
(DQ149705) Exoneura angophorae elongation factor-1 alpha (EF...    44   10.0   1
(DQ149701) Allodape friesei elongation factor-1 alpha (EF-1a...    44   10.0   1
(AY219723) Euschizaphis sp. CDvD-2003-2 elongation factor 1 ...    44   10.0   1
(AY219721) Euschizaphis sp. CDvD-2003-1 elongation factor 1 ...    44   10.0   1
(AY219720) Schizaphis graminum elongation factor 1 alpha gen...    44   10.0   1
(AF143614) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143613) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143612) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143611) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143610) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143609) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143608) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143607) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143606) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143605) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143604) Myzus persicae elongation factor-1 alpha (EF-1a) ...    44   10.0   1
(AF143603) Myzus nicotianae elongation factor-1 alpha (EF-1a...    44   10.0   1
(AF143602) Myzus nicotianae elongation factor-1 alpha (EF-1a...    44   10.0   1
(AF143601) Myzus nicotianae elongation factor-1 alpha (EF-1a...    44   10.0   1
(AF143600) Myzus nicotianae elongation factor-1 alpha (EF-1a...    44   10.0   1
(AF143599) Myzus nicotianae elongation factor-1 alpha (EF-1a...    44   10.0   1
(AF143598) Myzus nicotianae elongation factor-1 alpha (EF-1a...    44   10.0   1
(AF143597) Myzus nicotianae elongation factor-1 alpha (EF-1a...    44   10.0   1
(AF143596) Myzus nicotianae elongation factor-1 alpha (EF-1a...    44   10.0   1
(AF068479) Schizaphis graminum elongation factor 1-alpha gen...    44   10.0   1
(CU914510) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   10.0   1
(AC233013) Ornithorhynchus anatinus clone CH236-589C4, WORKI...    44   10.0   1
(AC219917) Bos taurus clone CH240-318G3, WORKING DRAFT SEQUE...    44   10.0   1
(AC201481) Strongylocentrotus purpuratus clone R3-3056F05, W...    44   10.0   1
(AC184452) Strongylocentrotus purpuratus clone R3-4007F17, W...    44   10.0   1
(AC180569) Strongylocentrotus purpuratus clone R3-3094P17, W...    44   10.0   1
(AC180417) Strongylocentrotus purpuratus clone R3-3105C06, W...    44   10.0   1
(AC179602) Strongylocentrotus purpuratus clone R3-1029D21, W...    44   10.0   1
(AC179019) Strongylocentrotus purpuratus clone R3-32L8, WORK...    44   10.0   1
(AC168367) Strongylocentrotus purpuratus clone R3-4013M15, W...    44   10.0   1
(FH007712) CHO_OF677xl06r1.ab1 CHO_OF Nicotiana tabacum geno...    44   10.0   1
(CE228374) tigr-gss-dog-17000333260760 Dog Library Canis lup...    44   10.0   1
(ES450986) 25956 Myzus persicae 2001-12 (red), Fenton Myzus ...    44   10.0   1
(ES219860) MpGnorm_ag4_O12 Myzus persicae, tobacco lineage, ...    44   10.0   1
(EE571804) B06_B06sg3a12_pDNRf_531745 Myzus persicae, tobacc...    44   10.0   1
(EE570639) H04_H04fm3d8_pDNRf_532503 Myzus persicae, line F0...    44   10.0   1
(DW014808) w9g11_M13F Myzus persicae, tobacco lineage, whole...    44   10.0   1
(DW011223) w13b20_M13F Myzus persicae, tobacco lineage, whol...    44   10.0   1
(DW010386) w10i1_M13F Myzus persicae, tobacco lineage, whole...    44   10.0   1
(DR396604) USDA-FP_156543 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR396118) USDA-FP_156055 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR395980) USDA-FP_155915 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR395156) USDA-FP_155091 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR394229) USDA-FP_154163 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR391558) USDA-FP_151490 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR391467) USDA-FP_151399 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR391379) USDA-FP_151311 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR391135) USDA-FP_151067 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR390133) USDA-FP_149953 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR389918) USDA-FP_149738 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR389476) USDA-FP_149296 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(DR389223) USDA-FP_149043 Adult Alate Aphis gossypii (WHAGA)...    44   10.0   1
(CX016762) EST 471 'Fleshless' Ugni blanc SSH Library Vitis ...    44   10.0   1
(BG521517) 11-24 Stevia field grown leaf cDNA Stevia rebaudi...    44   10.0   1
(BB621413) Mus musculus 13 days embryo male testis cDNA, RIK...    44   10.0   1

>(BJ385774) Dictyostelium discoideum cDNA clone:ddc56i02, 3' end,
           single read.
          Length = 746

 Score = 1439 bits (726), Expect(2) = 0.0
 Identities = 730/732 (99%)
 Strand = Plus / Minus


Query: 170 aaagtcacaggctccatccattacttttaagagtttggatcaatttataaaatatttaga 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aaagtcacaggctccatccattacttttaagagtttggatcaatttataaaatatttaga 687


Query: 230 agagaataactgtgttgatgatatcgaagtttctccatgctcaaagtcccatacattcaa 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agagaataactgtgttgatgatatcgaagtttctccatgctcaaagtcccatacattcaa 627


Query: 290 tagaccagtttcaacaccacgtctaattattaaaccaacatggtgtgtctatggtgactc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tagaccagtttcaacaccacgtctaattattaaaccaacatggtgtgtctatggtgactc 567


Query: 350 attaaatactgaattcttccactcttgtctaaaggataaaacatgtggtgatattattgt 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attaaatactgaattcttccactcttgtctaaaggataaaacatgtggtgatattattgt 507


Query: 410 ggaccactttgagccattggtctcctcaccaacagactttttattatcaaatggtggcca 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaccactttgagccattggtctcctcaccaacagactttttattatcaaatggtggcca 447


Query: 470 aagaattttagatacaccaaatgctggtggttcatccgtttggtcagaggtattatcatt 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagaattttagatacaccaaatgctggtggttcatccgtttggtcagaggtattatcatt 387


Query: 530 tgaagtattaaatcaagtttttggtgcacaattaaagaaaactgaaactgaaattgaata 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgaagtattaaatcaagtttttggtgcacaattaaagaaaactgaaactgaaattgaata 327


Query: 590 tgctccaggttcaaaaattacagatttctctgttgatattaacaatagtcatattggagt 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgctccaggttcaaaaattacagatttctctgttgatattaacaatagtcatattggagt 267


Query: 650 ttctgtggtaagaataattaactttttcgatctcaatggaagaacgtacaaagctgtttt 709
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttctgtggtaagaataattaactttttcgatctcaatggaagaacgtacaaagctgtttt 207


Query: 710 cacaccagaatatgctcgaaatcttttgtacaaaaagttatttggtgtcattgcctccac 769
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cacaccagaatatgctcgaaatcttttgtacaaaaagttatttggtgtcattgcctccac 147


Query: 770 tgaagcggttgttgataaatgggaaaaacaaattctttatgtttggactacatcttcttg 829
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 146 tgaagcggttgttgatnaatgggaaaaacaaattctttatgtttggactacatcttnttg 87


Query: 830 tgtcgccgatataattgttcaagaatattggaaagttccagcaaagttaagatcaaatac 889
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  tgtcgccgatataattgttcaagaatattggaaagttccagcaaagttaagatcaaatac 27


Query: 890 tttagtttatgt 901
           ||||||||||||
Sbjct: 26  tttagtttatgt 15

 Score = 30.2 bits (15), Expect(2) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 902 taatcatgcaacaaa 916
           |||||||||||||||
Sbjct: 15  taatcatgcaacaaa 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,019,285,951
Number of extensions: 62259822
Number of successful extensions: 4906020
Number of sequences better than 10.0: 121
Length of query: 1004
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 980
Effective length of database: 96,409,374,237
Effective search space: 94481186752260
Effective search space used: 94481186752260
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U15920-1 (Contig-U15920-1Q) /CSM_Contig/Contig-U15920-1Q.Seq.d
         (1004 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000821_520(CP000821|pid:none) Shewanella sediminis HAW-EB3, co...    35   3.1
AP009386_1423(AP009386|pid:none) Burkholderia multivorans ATCC 1...    34   7.0
FJ751775_1(FJ751775|pid:none) Paenibacillus alvei strain CCM 205...    34   9.1

>CP000821_520(CP000821|pid:none) Shewanella sediminis HAW-EB3,
           complete genome.
          Length = 321

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 24/88 (27%), Positives = 40/88 (45%)
 Frame = +3

Query: 198 KSLDQFIKYLEENNCVDDIEVSPCSKSHTFNRPVSTPRLIIKPTWCVYGDSLNTEFFHSC 377
           +S  QF +Y ++N    D+EV  C     F+       + + P   +Y    +   FH+C
Sbjct: 214 QSRSQFQEYCKQNTMQLDVEVEVCGAYSLFDCLRERNAVTLLPFSSIYNVINSMPDFHAC 273

Query: 378 LKDKTCGDIIVDHFEPLVSSPTDFLLSN 461
              K    + V+HF   +S PT +L+ N
Sbjct: 274 RLSK----VEVEHFYTNLSIPTLYLVYN 297

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,501,463,414
Number of extensions: 29918209
Number of successful extensions: 77318
Number of sequences better than 10.0: 3
Number of HSP's gapped: 77307
Number of HSP's successfully gapped: 3
Length of query: 334
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 205
Effective length of database: 633,664,753
Effective search space: 129901274365
Effective search space used: 129901274365
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.78  gvh: 0.28  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.39  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for Contig-U15920-1 is nuc
VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 8
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0