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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15913-1
Contig ID Contig-U15913-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15913-1 (Contig-U15913-1Q) /CSM_Contig/Contig-U15913-1Q.Seq.d
TTCAAAATTAACAAATAGAGAAAGTTCATCATCGTCATTCTTTAAGAGTC
AATCAGATATAATTAAAAAAGGATATTGGAATATTATATCGATTGAACCA
ATTTATGGCGGTGAACCAGGTATTTATCAAATGTGGTCATTGATTGAGGA
TCAATTGATACCAATTAAAGTTGACATTGGTAGAGTGTTTTATTTAAATT
CAATTGATACCGATCCATATGAAGATGCACAAAAGAATACAAATGTAATA
CCACCAAGAGGTAAACAAAGATTTAATGTTTTTTCAGTGACAATGAGTGA
AAGTCAATTTTTAGAACAATCAAAGGAATTGAATACACTATTCACCAATC
CAATGATTGAGGGTGTCTATGAAACAAAGGTACCATTGGATATTAAAGCC
ATTATTCAATGTGGTTGTGTAGCTACTTTGTCAAGAGTATCACCATTCTT
TACTAAAATAGTCAATAGTAACACAAGATTCTCTTTGGAGGATATCGCTT
CAAAACCTGATAAACAATTTCATTATCTTGCAGAACATAACTTTAATCAA
CTCTTTTTGTATCATAATAGTCGTGATGGAAAAGACGGTTATTTCGTTCT
TTTCAATATGAATACTCAACAATGTTCAGTTATTTTCTCAAATCCTTATA
TGGCCGCCAACAAAATCGATGCAAGAGTATTGAATTCCATAAAGGAGAAA
CTACCAGAAATCACCTTTACAATGGACCAAAAATCAAGTATGTCTTTGGC
AAAAAAAGAAATTGGTTCATTAATTATGGAATATCAACGTAAAGGTTTAC
CAACTATCATTCTACTACAAGTTCCAAATGCAATTGGAATATTGGAACAA
ATTCCAATACTTAGAGAATTCCCACGTGTACCAGTACCTTACCATGACAA
CGATTCAATGTATTCACCATTCAATTGGGATGTTCATTCATTGAAACCCT
TACCATTACGTTTAATGGATGCACCAAAACTTTGGGTTTACTATGCAAAT
ATGTCACGTTATGCAAATATACCCATTGGTAATATTCCAACTGATAATGC
ATCATTCATGTGTGATATTCTCTATGCTCGTTCTTTGGTTGAACAAAAAC
ATCTCCTTTGGATGTCTGATTCAAACTTCCCAGATTTAGGTGGTTCAGAA
GAAGATGATGCAAAATTCTATGAAGAATTAAATAATGTTGAAATTAATAA
TTCAGATTGTTATAATCAAGTTTGTTTCGAATTGGATATTGAAAATTTAG
CAACAAATACAATCTTGGAATCAATTCATTTGGCTGAAATTGAAGGTATT
TTAGGTAATGAATTAGGTGATGAATCAAATGTTGCAATGTTTGATGATAT
TAAAAATACTTCAAATAATTCCAATACCAAAAATGGTGCAAATCAAAATA
CTACAAATGATACAACATCATCATTTGATAAATTATCAATTACAAATAAA
TTTAGATCAGCAATTAATCATCAAATTAGTGGTTGTGAAAAAGAATTTAA
TATTCTTAGAAATTTAGTATCAAAATGGAAATTGGATTTAGTATCAGGTA
GTAATAGTAAAAGAAATGAAATTAGTTCACGTTATTCAAATTATCTTTTA
TTACATTTCTATCGTTGGATTAGCTCGACCAATTCAAAACTTTATGATCC
TATCCTTTATCGTACTTTACATCAATTAATGAAAAAAGTTTTCATTCAAT
TGATTTTCGAATTTAAAAAATTGGGTAGTAAAATAGTTTATGCAAATTTC
AATAAGATTATCATTTGTTCTCAAAAGGATTCAATTGAAGATGCTCGTTC
TTATTGTAACTATATCTTGGCTGTAATTAAAAAGAAAGAATTATTTAGTT
GGATTAATTTTAAACAAACAAATTATTATCATAATTTATTATGGTTAAAT
AATTCAAATTATTCTGGTATTTTATATTTTAATCCATTAATTAATAAAAA
TCAACAACAACAACAACAACAACAAGATAATGCTGATGATGACGATGATG
ATGATGTATCTGAAAATGAAGAAGAGCAACAACAGAAT----------AN
ANGGGGNTTNTNTNTTTTAATTTCNCTGAAAAACCTNTCCAANANTGATT
TTTCATCGGGNTCATTAAAAACGGNGAATGGGCCATAANATTCAGGNTTT
GGAGNANATTTGAAATNTTTGATATCCTCAGACNCGATTTCNCGATTTAC
AATTAAATAACCTTGTTTATCCNACATATAANAGATCATCATAATTGAAT
CNATTGAANAATNTGGAAATTTCAAAGGTAGNTTAGTAGTTTCAATATCA
TATGCCNACNCTTTTGGATCAGGTNTATCAACNCGAGTNGTTAATTCATT
CNCTGNTGNCNATTTACCNTTNTTTATAACTGTATACCATAACCCNACNC
GAATATTTNAATCNANTGCTGCTNTAACATAATANGGNACNTCATAT
Gap gap included
Contig length 2437
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 4
Number of EST 5
Link to clone list U15913
List of clone(s) 

est1=CHI444F,1,646
est2=AFE406E,536,1995
est3=CHQ291Z,1285,1907
est4=SSA552F,1391,2038
est5=CHI444Z,2039,2437
Translated Amino Acid sequence 
SKLTNRESSSSSFFKSQSDIIKKGYWNIISIEPIYGGEPGIYQMWSLIEDQLIPIKVDIG
RVFYLNSIDTDPYEDAQKNTNVIPPRGKQRFNVFSVTMSESQFLEQSKELNTLFTNPMIE
GVYETKVPLDIKAIIQCGCVATLSRVSPFFTKIVNSNTRFSLEDIASKPDKQFHYLAEHN
FNQLFLYHNSRDGKDGYFVLFNMNTQQCSVIFSNPYMAANKIDARVLNSIKEKLPEITFT
MDQKSSMSLAKKEIGSLIMEYQRKGLPTIILLQVPNAIGILEQIPILREFPRVPVPYHDN
DSMYSPFNWDVHSLKPLPLRLMDAPKLWVYYANMSRYANIPIGNIPTDNASFMCDILYAR
SLVEQKHLLWMSDSNFPDLGGSEEDDAKFYEELNNVEINNSDCYNQVCFELDIENLATNT
ILESIHLAEIEGILGNELGDESNVAMFDDIKNTSNNSNTKNGANQNTTNDTTSSFDKLSI
TNKFRSAINHQISGCEKEFNILRNLVSKWKLDLVSGSNSKRNEISSRYSNYLLLHFYRWI
SSTNSKLYDPILYRTLHQLMKKVFIQLIFEFKKLGSKIVYANFNKIIICSQKDSIEDARS
YCNYILAVIKKKELFSWINFKQTNYYHNLLWLNNSNYSGILYFNPLINKNQQQQQQQQDN
ADDDDDDDVSENEEEQQQN---

---XXGXXXLISLKNLSXXDFSSGSLKTXNGP*xsgfgxxlkxlissdxisrftik*pcl
sxi*xiiiiesiexxgnfkgxlvvsisyaxxfgsgxstrvvnsfxxxxlpxfitvyhnpt
rifxsxaaxt*xgtsy
Translated Amino Acid sequence (All Frames) 
Frame A:
fkink*rkfiivil*esiryn*krileyyid*tnlwr*trylsnvvid*gsidtn*s*hw
*svlfkfn*yrsi*rctkeykcnttkr*tki*cffsdne*ksifrtikgieytihqsnd*
gcl*nkgtigy*shysmwlcsyfvksitily*nsq**hkilfggyrfkt**tislscrt*
l*stlfvs**s*wkrrlfrsfqyeystmfsyflkslygrqqnrcksiefhkgettrnhly
ngpkikyvfgkkrnwfinygist*rftnyhsttsskcnwnigtnsnt*riptctstlp*q
rfnvftiqlgcsfietltitfngctktlgllckyvtlckythw*ysn**ciihv*yslcs
ffg*tktspldv*fklprfrwfrrr*ckil*rik*c*n**frll*sslfrigy*kfsnky
nlginsfg*n*ryfr**ir**ikccnv**y*kyfk*fqyqkwckskyyk*yniii**iin
yk*i*isn*ssn*wl*kri*ys*kfsikmeigfsir****kk*n*ftlfklsfitflsld
*ldqfktl*syplsyftsineksfhsidfri*kig**nslckfq*dyhlfskgfn*rcsf
ll*lylgcn*kerii*ld*f*tnklls*fimvk*fklfwyfif*sin**kstttttttr*
c***r***ci*k*rratte---

---XXGXXXLISLKNLSXXDFSSGSLKTXNGP*xsgfgxxlkxlissdxisrftik*pcl
sxi*xiiiiesiexxgnfkgxlvvsisyaxxfgsgxstrvvnsfxxxxlpxfitvyhnpt
rifxsxaaxt*xgtsy

Frame B:
SKLTNRESSSSSFFKSQSDIIKKGYWNIISIEPIYGGEPGIYQMWSLIEDQLIPIKVDIG
RVFYLNSIDTDPYEDAQKNTNVIPPRGKQRFNVFSVTMSESQFLEQSKELNTLFTNPMIE
GVYETKVPLDIKAIIQCGCVATLSRVSPFFTKIVNSNTRFSLEDIASKPDKQFHYLAEHN
FNQLFLYHNSRDGKDGYFVLFNMNTQQCSVIFSNPYMAANKIDARVLNSIKEKLPEITFT
MDQKSSMSLAKKEIGSLIMEYQRKGLPTIILLQVPNAIGILEQIPILREFPRVPVPYHDN
DSMYSPFNWDVHSLKPLPLRLMDAPKLWVYYANMSRYANIPIGNIPTDNASFMCDILYAR
SLVEQKHLLWMSDSNFPDLGGSEEDDAKFYEELNNVEINNSDCYNQVCFELDIENLATNT
ILESIHLAEIEGILGNELGDESNVAMFDDIKNTSNNSNTKNGANQNTTNDTTSSFDKLSI
TNKFRSAINHQISGCEKEFNILRNLVSKWKLDLVSGSNSKRNEISSRYSNYLLLHFYRWI
SSTNSKLYDPILYRTLHQLMKKVFIQLIFEFKKLGSKIVYANFNKIIICSQKDSIEDARS
YCNYILAVIKKKELFSWINFKQTNYYHNLLWLNNSNYSGILYFNPLINKNQQQQQQQQDN
ADDDDDDDVSENEEEQQQN---

---xgxxxf*fx*ktxpxxifhrxh*krxmghxiqxlexi*nx*ypqtrfxdlqlnnlvy
ptyxrss*lnxlxnxeiskvx**fqyhmptlldqvyqxexlihslxxiyxxl*lytitxx
eyxnxxll*hnxxxh

Frame C:
qn*qiekvhhrhslrvnqi*lkkdigilyrlnqfmavnqvfikcgh*lrin*yqlkltlv
ecfi*iqlipihmkmhkriqm*yhqevnkdlmffq*q*vkvnf*nnqrn*ihyspiq*lr
vsmkqryhwilkplfnvvv*llcqeyhhsllk*sivtqdslwrislqnlinnfiilqnit
linsfciiivvmektvisffsi*ilnnvqlfsqiliwpptksmqey*ip*rrnyqksplq
wtknqvclwqkkklvh*lwninvkvyqlsfyykfqmqleywnkfqylenshvyqyltmtt
iqcihhsigmfih*npyhyv*wmhqnfgftmqichvmqiyplvifqlimhhscvifsmlv
lwlnknisfgcliqtsqi*vvqkkmmqnsmkn*imlkliiqiviikfvsnwilki*qqiq
swnqfiwlklkvf*vmn*vmnqmlqclmilkilqiipipkmvqikilqmiqhhhlinyql
qinldqqliiklvvvkknliflei*yqngnwi*yqvvivkemklvhviqiifyyisivgl
arpiqnfmilsfivlyin**kkfsfn*fsnlknwvvk*fmqisirlsfvlkriqlkmlvl
ivtiswl*lkrknylvglilnkqiiiiiyyg*iiqiilvfyilih*likinnnnnnnkim
lmmtmmmmylkmkksnnr---

---xgxxxfnfxekpxqx*ffigxikngewaixfrxwxxfexfdilrxdfxiyn*itlfi
xhixdhhn*ix*xxwkfqr*xssfniicxxfwirxinxsx*fixxxxftxxyncip*pxx
nixixccxniixxxi
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15913-1 (Contig-U15913-1Q)
/CSM_Contig/Contig-U15913-1Q.Seq.d
         (2447 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15913-1 (Contig-U15913-1Q) /CSM_Contig/Conti...  3826  0.0
Contig-U12375-1 (Contig-U12375-1Q) /CSM_Contig/Conti...    40  0.016
Contig-U12138-1 (Contig-U12138-1Q) /CSM_Contig/Conti...    38  0.063
Contig-U12024-1 (Contig-U12024-1Q) /CSM_Contig/Conti...    38  0.063
Contig-U11073-1 (Contig-U11073-1Q) /CSM_Contig/Conti...    38  0.063
Contig-U06273-1 (Contig-U06273-1Q) /CSM_Contig/Conti...    38  0.063
Contig-U01562-1 (Contig-U01562-1Q) /CSM_Contig/Conti...    38  0.063
Contig-U16202-1 (Contig-U16202-1Q) /CSM_Contig/Conti...    36  0.25
Contig-U16034-1 (Contig-U16034-1Q) /CSM_Contig/Conti...    36  0.25
Contig-U15908-1 (Contig-U15908-1Q) /CSM_Contig/Conti...    36  0.25

>Contig-U15913-1 (Contig-U15913-1Q) /CSM_Contig/Contig-U15913-1Q.Seq.d
          Length = 2447

 Score = 3826 bits (1930), Expect = 0.0
 Identities = 1944/1951 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    ttcaaaattaacaaatagagaaagttcatcatcgtcattctttaagagtcaatcagatat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    ttcaaaattaacaaatagagaaagttcatcatcgtcattctttaagagtcaatcagatat 60

                                                                        
Query: 61   aattaaaaaaggatattggaatattatatcgattgaaccaatttatggcggtgaaccagg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   aattaaaaaaggatattggaatattatatcgattgaaccaatttatggcggtgaaccagg 120

                                                                        
Query: 121  tatttatcaaatgtggtcattgattgaggatcaattgataccaattaaagttgacattgg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tatttatcaaatgtggtcattgattgaggatcaattgataccaattaaagttgacattgg 180

                                                                        
Query: 181  tagagtgttttatttaaattcaattgataccgatccatatgaagatgcacaaaagaatac 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tagagtgttttatttaaattcaattgataccgatccatatgaagatgcacaaaagaatac 240

                                                                        
Query: 241  aaatgtaataccaccaagaggtaaacaaagatttaatgttttttcagtgacaatgagtga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  aaatgtaataccaccaagaggtaaacaaagatttaatgttttttcagtgacaatgagtga 300

                                                                        
Query: 301  aagtcaatttttagaacaatcaaaggaattgaatacactattcaccaatccaatgattga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  aagtcaatttttagaacaatcaaaggaattgaatacactattcaccaatccaatgattga 360

                                                                        
Query: 361  gggtgtctatgaaacaaaggtaccattggatattaaagccattattcaatgtggttgtgt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  gggtgtctatgaaacaaaggtaccattggatattaaagccattattcaatgtggttgtgt 420

                                                                        
Query: 421  agctactttgtcaagagtatcaccattctttactaaaatagtcaatagtaacacaagatt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  agctactttgtcaagagtatcaccattctttactaaaatagtcaatagtaacacaagatt 480

                                                                        
Query: 481  ctctttggaggatatcgcttcaaaacctgataaacaatttcattatcttgcagaacataa 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ctctttggaggatatcgcttcaaaacctgataaacaatttcattatcttgcagaacataa 540

                                                                        
Query: 541  ctttaatcaactctttttgtatcataatagtcgtgatggaaaagacggttatttcgttct 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ctttaatcaactctttttgtatcataatagtcgtgatggaaaagacggttatttcgttct 600

                                                                        
Query: 601  tttcaatatgaatactcaacaatgttcagttattttctcaaatccttatatggccgccaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tttcaatatgaatactcaacaatgttcagttattttctcaaatccttatatggccgccaa 660

                                                                        
Query: 661  caaaatcgatgcaagagtattgaattccataaaggagaaactaccagaaatcacctttac 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  caaaatcgatgcaagagtattgaattccataaaggagaaactaccagaaatcacctttac 720

                                                                        
Query: 721  aatggaccaaaaatcaagtatgtctttggcnnnnnnngaaattggttcattaattatgga 780
            ||||||||||||||||||||||||||||||       |||||||||||||||||||||||
Sbjct: 721  aatggaccaaaaatcaagtatgtctttggcaaaaaaagaaattggttcattaattatgga 780

                                                                        
Query: 781  atatcaacgtaaaggtttaccaactatcattctactacaagttccaaatgcaattggaat 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  atatcaacgtaaaggtttaccaactatcattctactacaagttccaaatgcaattggaat 840

                                                                        
Query: 841  attggaacaaattccaatacttagagaattcccacgtgtaccagtaccttaccatgacaa 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  attggaacaaattccaatacttagagaattcccacgtgtaccagtaccttaccatgacaa 900

                                                                        
Query: 901  cgattcaatgtattcaccattcaattgggatgttcattcattgaaacccttaccattacg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  cgattcaatgtattcaccattcaattgggatgttcattcattgaaacccttaccattacg 960

                                                                        
Query: 961  tttaatggatgcaccaaaactttgggtttactatgcaaatatgtcacgttatgcaaatat 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tttaatggatgcaccaaaactttgggtttactatgcaaatatgtcacgttatgcaaatat 1020

                                                                        
Query: 1021 acccattggtaatattccaactgataatgcatcattcatgtgtgatattctctatgctcg 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 acccattggtaatattccaactgataatgcatcattcatgtgtgatattctctatgctcg 1080

                                                                        
Query: 1081 ttctttggttgaacaaaaacatctcctttggatgtctgattcaaacttcccagatttagg 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ttctttggttgaacaaaaacatctcctttggatgtctgattcaaacttcccagatttagg 1140

                                                                        
Query: 1141 tggttcagaagaagatgatgcaaaattctatgaagaattaaataatgttgaaattaataa 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tggttcagaagaagatgatgcaaaattctatgaagaattaaataatgttgaaattaataa 1200

                                                                        
Query: 1201 ttcagattgttataatcaagtttgtttcgaattggatattgaaaatttagcaacaaatac 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ttcagattgttataatcaagtttgtttcgaattggatattgaaaatttagcaacaaatac 1260

                                                                        
Query: 1261 aatcttggaatcaattcatttggctgaaattgaaggtattttaggtaatgaattaggtga 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aatcttggaatcaattcatttggctgaaattgaaggtattttaggtaatgaattaggtga 1320

                                                                        
Query: 1321 tgaatcaaatgttgcaatgtttgatgatattaaaaatacttcaaataattccaataccaa 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tgaatcaaatgttgcaatgtttgatgatattaaaaatacttcaaataattccaataccaa 1380

                                                                        
Query: 1381 aaatggtgcaaatcaaaatactacaaatgatacaacatcatcatttgataaattatcaat 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 aaatggtgcaaatcaaaatactacaaatgatacaacatcatcatttgataaattatcaat 1440

                                                                        
Query: 1441 tacaaataaatttagatcagcaattaatcatcaaattagtggttgtgaaaaagaatttaa 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tacaaataaatttagatcagcaattaatcatcaaattagtggttgtgaaaaagaatttaa 1500

                                                                        
Query: 1501 tattcttagaaatttagtatcaaaatggaaattggatttagtatcaggtagtaatagtaa 1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 tattcttagaaatttagtatcaaaatggaaattggatttagtatcaggtagtaatagtaa 1560

                                                                        
Query: 1561 aagaaatgaaattagttcacgttattcaaattatcttttattacatttctatcgttggat 1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 aagaaatgaaattagttcacgttattcaaattatcttttattacatttctatcgttggat 1620

                                                                        
Query: 1621 tagctcgaccaattcaaaactttatgatcctatcctttatcgtactttacatcaattaat 1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 tagctcgaccaattcaaaactttatgatcctatcctttatcgtactttacatcaattaat 1680

                                                                        
Query: 1681 gaaaaaagttttcattcaattgattttcgaatttaaaaaattgggtagtaaaatagttta 1740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 gaaaaaagttttcattcaattgattttcgaatttaaaaaattgggtagtaaaatagttta 1740

                                                                        
Query: 1741 tgcaaatttcaataagattatcatttgttctcaaaaggattcaattgaagatgctcgttc 1800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 tgcaaatttcaataagattatcatttgttctcaaaaggattcaattgaagatgctcgttc 1800

                                                                        
Query: 1801 ttattgtaactatatcttggctgtaattaaaaagaaagaattatttagttggattaattt 1860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 ttattgtaactatatcttggctgtaattaaaaagaaagaattatttagttggattaattt 1860

                                                                        
Query: 1861 taaacaaacaaattattatcataatttattatggttaaataattcaaattattctggtat 1920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 taaacaaacaaattattatcataatttattatggttaaataattcaaattattctggtat 1920

                                           
Query: 1921 tttatattttaatccattaattaataaaaat 1951
            |||||||||||||||||||||||||||||||
Sbjct: 1921 tttatattttaatccattaattaataaaaat 1951


 Score =  519 bits (262), Expect = e-147
 Identities = 379/379 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2069 aatttcnctgaaaaacctntccaanantgatttttcatcgggntcattaaaaacggngaa 2128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2069 aatttcnctgaaaaacctntccaanantgatttttcatcgggntcattaaaaacggngaa 2128

                                                                        
Query: 2129 tgggccataanattcaggntttggagnanatttgaaatntttgatatcctcagacncgat 2188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2129 tgggccataanattcaggntttggagnanatttgaaatntttgatatcctcagacncgat 2188

                                                                        
Query: 2189 ttcncgatttacaattaaataaccttgtttatccnacatataanagatcatcataattga 2248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2189 ttcncgatttacaattaaataaccttgtttatccnacatataanagatcatcataattga 2248

                                                                        
Query: 2249 atcnattgaanaatntggaaatttcaaaggtagnttagtagtttcaatatcatatgccna 2308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2249 atcnattgaanaatntggaaatttcaaaggtagnttagtagtttcaatatcatatgccna 2308

                                                                        
Query: 2309 cncttttggatcaggtntatcaacncgagtngttaattcattcnctgntgncnatttacc 2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2309 cncttttggatcaggtntatcaacncgagtngttaattcattcnctgntgncnatttacc 2368

                                                                        
Query: 2369 nttntttataactgtataccataacccnacncgaatatttnaatcnantgctgctntaac 2428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2369 nttntttataactgtataccataacccnacncgaatatttnaatcnantgctgctntaac 2428

                               
Query: 2429 ataatanggnacntcatat 2447
            |||||||||||||||||||
Sbjct: 2429 ataatanggnacntcatat 2447


 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                            
Query: 2007 tatctgaaaatgaagaagagcaacaacagaat 2038
            ||||||||||||||||||||||||||||||||
Sbjct: 2007 tatctgaaaatgaagaagagcaacaacagaat 2038


>Contig-U12375-1 (Contig-U12375-1Q) /CSM_Contig/Contig-U12375-1Q.Seq.d
          Length = 1431

 Score = 40.1 bits (20), Expect = 0.016
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1180 aaataatgttgaaattaata 1199
            ||||||||||||||||||||
Sbjct: 1000 aaataatgttgaaattaata 1019


>Contig-U12138-1 (Contig-U12138-1Q) /CSM_Contig/Contig-U12138-1Q.Seq.d
          Length = 2117

 Score = 38.2 bits (19), Expect = 0.063
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1404 caaatgatacaacatcatc 1422
            |||||||||||||||||||
Sbjct: 7    caaatgatacaacatcatc 25


 Score = 34.2 bits (17), Expect = 0.98
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 1506 ttagaaatttagtatcaaaat 1526
            |||||| ||||||||||||||
Sbjct: 1880 ttagaactttagtatcaaaat 1900


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,189
Number of Sequences: 8402
Number of extensions: 52189
Number of successful extensions: 5818
Number of sequences better than 10.0: 204
length of query: 2447
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2430
effective length of database: 7,932,708
effective search space: 19276480440
effective search space used: 19276480440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.28
Homology vs DNA 
Query= Contig-U15913-1 (Contig-U15913-1Q) /CSM_Contig/Contig-U15913-1Q.Seq.d
         (2447 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ366262) Dictyostelium discoideum cDNA clone:ddc38h12, 5' ...  1273   0.0    1
(BJ385392) Dictyostelium discoideum cDNA clone:ddc54e24, 3' ...   860   0.0    2
(BJ342013) Dictyostelium discoideum cDNA clone:dda9l02, 3' e...   866   0.0    2
(BJ325005) Dictyostelium discoideum cDNA clone:dda9l02, 5' e...   529   0.0    2
(BJ380494) Dictyostelium discoideum cDNA clone:ddc38h12, 3' ...   527   e-145  1
(AU072696) Dictyostelium discoideum slug cDNA, clone SSA552.      426   e-114  1
(AC141726) Apis mellifera clone CH224-57G2, WORKING DRAFT SE...    64   3e-05  1
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    36   0.17   22
(EU168191) Heterosigma akashiwo strain CCMP 452 chloroplast,...    36   0.38   12
(EU168190) Heterosigma akashiwo strain NIES 293 chloroplast,...    36   0.85   11
(BP637211) Arabidopsis thaliana cDNA clone:RAFL19-04-L10, 3'...    42   0.94   2
(EK301430) 1095462366104 Global-Ocean-Sampling_GS-31-01-01-1...    38   1.1    2
(M96931) Pneumocystis carinii DNA polymerase II gene, partia...    38   1.1    2
(AC180404) Strongylocentrotus purpuratus clone R3-3111M16, W...    38   1.5    8
(DD003622) Human Genes And Gene Expression Products.               48   1.6    1
(AX385173) Sequence 101 from Patent WO0214500.                     48   1.6    1
(AK130478) Homo sapiens cDNA FLJ26968 fis, clone SLV01496.         48   1.6    1
(AC069483) Homo sapiens, clone RP11-29M5, complete sequence.       48   1.6    1
(EI411980) E11_hs15-35000345_PTro_040408.f Pan troglodytes N...    48   1.6    1
(EI411978) E11_hs15-35000345_PPyg_040419.f Pongo pygmaeus NG...    48   1.6    1
(EC268861) TT1CT40TV Tetrahymena thermophila SB210 cDNA libr...    48   1.6    1
(DY677217) TT1A290TV Tetrahymena thermophila EST library str...    48   1.6    1
(BQ016713) UI-H-DI0-auy-j-02-0-UI.s1 NCI_CGAP_DI0 Homo sapie...    48   1.6    1
(Z81045) Caenorhabditis elegans Cosmid C36F7.                      38   2.0    4
(AC217430) Solanum lycopersicum chromosome 12 clone LE_HBa-2...    38   2.3    7
(ER364730) 1093018963153 Global-Ocean-Sampling_GS-34-01-01-1...    46   3.2    2
(ED218201) AUAC-aad91f08.b1 Ascaris suum whole genome shotgu...    42   3.3    2
(AC111940) Rattus norvegicus clone CH230-204C3, WORKING DRAF...    44   3.3    6
(CS730534) Sequence 464 from Patent WO2007095469.                  34   3.8    2
(ED826450) MUGQ_CH252P157E07T7_GL476_028 CHORI-252 Vervet Mo...    38   3.8    3
(EK308914) 1095462390262 Global-Ocean-Sampling_GS-31-01-01-1...    32   4.1    2
(CT027807) Zebrafish DNA sequence from clone CH73-165P16 in ...    46   6.2    1
(AC136484) Rattus norvegicus clone CH230-22N15, WORKING DRAF...    46   6.2    1
(AC131609) Rattus norvegicus clone CH230-1J10, *** SEQUENCIN...    46   6.2    1
(AC123497) Rattus norvegicus clone CH230-104M4, *** SEQUENCI...    46   6.2    1
(AC098255) Rattus norvegicus clone CH230-1G9, *** SEQUENCING...    46   6.2    1
(AC218595) Bos taurus clone CH240-299N23, WORKING DRAFT SEQU...    46   6.2    1
(AC197344) Zea mays chromosome 2 clone CH201-317D17; ZMMBBc0...    46   6.2    1
(AC195590) Zea mays chromosome 2 clone CH201-56L5; ZMMBBc005...    46   6.2    1
(AC181840) Strongylocentrotus purpuratus clone R3-1022H7, WO...    46   6.2    1
(ER488885) 1093015316028 Global-Ocean-Sampling_GS-35-01-01-1...    46   6.2    1
(EJ736018) 1092961152565 Global-Ocean-Sampling_GS-30-02-01-1...    46   6.2    1
(EJ681064) 1092955128080 Global-Ocean-Sampling_GS-30-02-01-1...    46   6.2    1
(EJ667859) 1092955048382 Global-Ocean-Sampling_GS-30-02-01-1...    46   6.2    1
(EJ651959) 1092954004339 Global-Ocean-Sampling_GS-30-02-01-1...    46   6.2    1
(EJ333719) 1092963459100 Global-Ocean-Sampling_GS-28-01-01-1...    46   6.2    1
(EJ229055) 1092402551407 Global-Ocean-Sampling_GS-27-01-01-1...    46   6.2    1
(CZ305515) ZMMBF0084P20r ZMMBF Zea mays genomic clone ZMMBF0...    46   6.2    1
(CC802292) ih27b10.b1 WGS-ZmaysU (DH10b or JM107MA2) Zea may...    46   6.2    1
(CC732651) OGUIU35TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    46   6.2    1
(CC387664) PUHPY25TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   6.2    1
(BZ827602) PUFDJ28TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   6.2    1
(EB343557) CNSN01-F-031130-501 Normalized CNS library (juven...    46   6.2    1
(BB996479) Ilyoplax pusilla mRNA, clone: ARN01A01NGRM0001_C0...    46   6.2    1
(Z26035) A. thaliana transcribed sequence; clone GBGe177.          46   6.2    1

>(BJ366262) Dictyostelium discoideum cDNA clone:ddc38h12, 5' end,
           single read.
          Length = 646

 Score = 1273 bits (642), Expect = 0.0
 Identities = 642/642 (100%)
 Strand = Plus / Minus


Query: 1   ttcaaaattaacaaatagagaaagttcatcatcgtcattctttaagagtcaatcagatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttcaaaattaacaaatagagaaagttcatcatcgtcattctttaagagtcaatcagatat 587


Query: 61  aattaaaaaaggatattggaatattatatcgattgaaccaatttatggcggtgaaccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aattaaaaaaggatattggaatattatatcgattgaaccaatttatggcggtgaaccagg 527


Query: 121 tatttatcaaatgtggtcattgattgaggatcaattgataccaattaaagttgacattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tatttatcaaatgtggtcattgattgaggatcaattgataccaattaaagttgacattgg 467


Query: 181 tagagtgttttatttaaattcaattgataccgatccatatgaagatgcacaaaagaatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tagagtgttttatttaaattcaattgataccgatccatatgaagatgcacaaaagaatac 407


Query: 241 aaatgtaataccaccaagaggtaaacaaagatttaatgttttttcagtgacaatgagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaatgtaataccaccaagaggtaaacaaagatttaatgttttttcagtgacaatgagtga 347


Query: 301 aagtcaatttttagaacaatcaaaggaattgaatacactattcaccaatccaatgattga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aagtcaatttttagaacaatcaaaggaattgaatacactattcaccaatccaatgattga 287


Query: 361 gggtgtctatgaaacaaaggtaccattggatattaaagccattattcaatgtggttgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gggtgtctatgaaacaaaggtaccattggatattaaagccattattcaatgtggttgtgt 227


Query: 421 agctactttgtcaagagtatcaccattctttactaaaatagtcaatagtaacacaagatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agctactttgtcaagagtatcaccattctttactaaaatagtcaatagtaacacaagatt 167


Query: 481 ctctttggaggatatcgcttcaaaacctgataaacaatttcattatcttgcagaacataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ctctttggaggatatcgcttcaaaacctgataaacaatttcattatcttgcagaacataa 107


Query: 541 ctttaatcaactctttttgtatcataatagtcgtgatggaaaagacggttatttcgttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ctttaatcaactctttttgtatcataatagtcgtgatggaaaagacggttatttcgttct 47


Query: 601 tttcaatatgaatactcaacaatgttcagttattttctcaaa 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  tttcaatatgaatactcaacaatgttcagttattttctcaaa 5

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,535,476,815
Number of extensions: 149941985
Number of successful extensions: 12144881
Number of sequences better than 10.0: 55
Length of query: 2447
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2422
Effective length of database: 96,311,147,814
Effective search space: 233265600005508
Effective search space used: 233265600005508
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U15913-1 (Contig-U15913-1Q) /CSM_Contig/Contig-U15913-1Q.Seq.d
         (2447 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RD4) RecName: Full=DNA polymerase epsilon catalytic subunit ...  1264   0.0
AF202988_1(AF202988|pid:none) Xenopus laevis DNA polymerase epsi...   333   2e-89
BC048166_1(BC048166|pid:none) Mus musculus polymerase (DNA direc...   330   1e-88
AK143509_1(AK143509|pid:none) Mus musculus 8 cells embryo 8 cell...   330   1e-88
AF123502_1(AF123502|pid:none) Mus musculus DNA polymerase epsilo...   323   2e-86
AY273166_1(AY273166|pid:none) Homo sapiens polymerase (DNA direc...   322   3e-86
AF127975_1(AF127975|pid:none) Homo sapiens DNA polymerase epsilo...   321   7e-86
S60080_1(S60080|pid:none) DNA polymerase epsilon catalytic subun...   321   9e-86
AC150566_5(AC150566|pid:none) Medicago truncatula clone mth2-21o...   274   1e-71
AP004861_19(AP004861|pid:none) Oryza sativa Japonica Group genom...   273   2e-71
CU633866_25(CU633866|pid:none) Podospora anserina genomic DNA ch...   216   2e-54
(O93845) RecName: Full=DNA polymerase epsilon catalytic subunit ...   206   3e-51
AY061620_1(AY061620|pid:none) Drosophila melanogaster SD09005 fu...   204   2e-50
AF019254_1(AF019254|pid:none) Emericella nidulans DNA polymerase...   202   4e-50
(Q5K9M7) RecName: Full=DNA polymerase epsilon catalytic subunit ...   202   5e-50
FN357401_7(FN357401|pid:none) Schistosoma mansoni genome sequenc...   199   5e-49
FN392319_78(FN392319|pid:none) Pichia pastoris GS115 chromosome ...   196   3e-48
AM920427_1598(AM920427|pid:none) Penicillium chrysogenum Wiscons...   192   5e-47
X92494_11(X92494|pid:none) S.cerevisiae BNI1, N0647, APL1, N0665...   189   3e-46
(Q752B8) RecName: Full=DNA polymerase epsilon catalytic subunit ...   181   9e-44
T21712(T21712) hypothetical protein F33H2.5 - Caenorhabditis ele...   176   3e-42
(Q6BNG2) RecName: Full=DNA polymerase epsilon catalytic subunit ...   176   4e-42
(Q6CUS7) RecName: Full=DNA polymerase epsilon catalytic subunit ...   176   5e-42
AM989981_12(AM989981|pid:none) Zygosaccharomyces rouxii strain C...   175   8e-42
CP000496_556(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   170   2e-40
CP001577_249(CP001577|pid:none) Micromonas sp. RCC299 chromosome...   166   4e-39
CR954211_201(CR954211|pid:none) Ostreococcus tauri strain OTTH05...   155   9e-36
AB209902_1(AB209902|pid:none) Homo sapiens mRNA for DNA polymera...   127   3e-27
AK141674_1(AK141674|pid:none) Mus musculus 9 days embryo whole b...   127   3e-27
AB259046_1(AB259046|pid:none) Xenopus laevis POLE1 mRNA for DNA ...   124   2e-26
BC093432_1(BC093432|pid:none) Danio rerio novel protein similar ...   123   4e-26
(Q6C4J0) RecName: Full=DNA polymerase epsilon catalytic subunit ...   113   3e-23
AM502253_448(AM502253|pid:none) Leishmania infantum chromosome 35.    103   3e-20
CP000081_434(CP000081|pid:none) Leishmania major chromosome 35, ...   103   3e-20
AC150566_6(AC150566|pid:none) Medicago truncatula clone mth2-21o...   103   3e-20
EU956885_1(EU956885|pid:none) Zea mays clone 1576630 unknown mRNA.    101   1e-19
M96931_1(M96931|pid:none) Pneumocystis carinii DNA polymerase II...    99   6e-19
AF067404_1(AF067404|pid:none) Trichomonas vaginalis DNA polymera...    95   1e-17
AL590449_120(AL590449|pid:none) chromosome X of strain GB-M1 of ...    83   5e-14
AL844505_298(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    74   2e-11
CR380951_204(CR380951|pid:none) Candida glabrata strain CBS138 c...    39   1.2
AL844505_292(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.5
CR382401_38(CR382401|pid:none) Plasmodium falciparum chromosome ...    38   1.5
AE014187_545(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   4.5
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ...    37   4.5
CP000937_516(CP000937|pid:none) Francisella philomiragia subsp. ...    37   4.5
AC117081_31(AC117081|pid:none) Dictyostelium discoideum chromoso...    36   7.6
AP009180_15(AP009180|pid:none) Candidatus Carsonella ruddii PV D...    36   7.6
FJ396031_1(FJ396031|pid:none) HIV-1 isolate QD022.1957I.ENV.D2 f...    35   9.9
FJ396028_1(FJ396028|pid:none) HIV-1 isolate QD022.1957I.ENV.A4 f...    35   9.9
AL034557_57(AL034557|pid:none) Plasmodium falciparum MAL4P1.  &A...    35   9.9
(Q54IK9) RecName: Full=Protein hook homolog; AltName: Full=DdHk3;      35   9.9

>(Q54RD4) RecName: Full=DNA polymerase epsilon catalytic subunit A;
                  Short=DNA polymerase II subunit A;
            EC=2.7.7.7;
          Length = 2380

 Score = 1264 bits (3272), Expect = 0.0
 Identities = 627/649 (96%), Positives = 627/649 (96%)
 Frame = +2

Query: 2    SKLTNREXXXXXXXXXXXDIIKKGYWNIISIEPIYGGEPGIYQMWSLIEDQLIPIKVDIG 181
            SKLTNRE           DIIKKGYWNIISIEPIYGGEPGIYQMWSLIEDQLIPIKVDIG
Sbjct: 1316 SKLTNRESSSSSFFKSQSDIIKKGYWNIISIEPIYGGEPGIYQMWSLIEDQLIPIKVDIG 1375

Query: 182  RVFYLNSIDTDPYEDAQKNTNVIPPRGKQRFNVFSVTMSESQFLEQSKELNTLFTNPMIE 361
            RVFYLNSIDTDPYEDAQKNTNVIPPRGKQRFNVFSVTMSESQFLEQSKELNTLFTNPMIE
Sbjct: 1376 RVFYLNSIDTDPYEDAQKNTNVIPPRGKQRFNVFSVTMSESQFLEQSKELNTLFTNPMIE 1435

Query: 362  GVYETKVPLDIKAIIQCGCVATLSRVSPFFTKIVNSNTRFSLEDIASKPDKQFHYLAEHN 541
            GVYETKVPLDIKAIIQCGCVATLSRVSPFFTKIVNSNTRFSLEDIASKPDKQFHYLAEHN
Sbjct: 1436 GVYETKVPLDIKAIIQCGCVATLSRVSPFFTKIVNSNTRFSLEDIASKPDKQFHYLAEHN 1495

Query: 542  FNQLFLYHNSRDGKDGYFVLFNMNTQQCSVIFSNPYMAANKIDARVLNSIKEKLPEITFT 721
            FNQLFLYHNSRDGKDGYFVLFNMNTQQCSVIFSNPYMAANKIDARVLNSIKEKLPEITFT
Sbjct: 1496 FNQLFLYHNSRDGKDGYFVLFNMNTQQCSVIFSNPYMAANKIDARVLNSIKEKLPEITFT 1555

Query: 722  MDQKSSMSLAKKEIGSLIMEYQRKGLPTIILLQVPNAIGILEQIPILREFPRVPVPYHDN 901
            MDQKSSMSLAKKEIGSLIMEYQRKGLPTIILLQVPNAIGILEQIPILREFPRVPVPYHDN
Sbjct: 1556 MDQKSSMSLAKKEIGSLIMEYQRKGLPTIILLQVPNAIGILEQIPILREFPRVPVPYHDN 1615

Query: 902  DSMYSPFNWDVHSLKPLPLRLMDAPKLWVYYANMSRYANIPIGNIPTDNASFMCDILYAR 1081
            DSMYSPFNWDVHSLKPLPLRLMDAPKLWVYYANMSRYANIPIGNIPTDNASFMCDILYAR
Sbjct: 1616 DSMYSPFNWDVHSLKPLPLRLMDAPKLWVYYANMSRYANIPIGNIPTDNASFMCDILYAR 1675

Query: 1082 SLVEQKHLLWMSDSNFPDLGGSEEDDAKFYEELNNVEINNSDCYNQVCFELDIENLATNT 1261
            SLVEQKHLLWMSDSNFPDLGGSEEDDAKFYEELNNVEINNSDCYNQVCFELDIENLATNT
Sbjct: 1676 SLVEQKHLLWMSDSNFPDLGGSEEDDAKFYEELNNVEINNSDCYNQVCFELDIENLATNT 1735

Query: 1262 ILESIHLAEIEGILGNELGDESNVAMFDDIXXXXXXXXXXXGANQNTTNDTTSSFDKLSI 1441
            ILESIHLAEIEGILGNELGDESNVAMFDDI           GANQNTTNDTTSSFDKLSI
Sbjct: 1736 ILESIHLAEIEGILGNELGDESNVAMFDDIKNTSNNSNTKNGANQNTTNDTTSSFDKLSI 1795

Query: 1442 TNKFRSAINHQISGCEKEFNILRNLVSKWKLDLVSGSNSKRNEISSRYSNYLLLHFYRWI 1621
            TNKFRSAINHQISGCEKEFNILRNLVSKWKLDLVSGSNSKRNEISSRYSNYLLLHFYRWI
Sbjct: 1796 TNKFRSAINHQISGCEKEFNILRNLVSKWKLDLVSGSNSKRNEISSRYSNYLLLHFYRWI 1855

Query: 1622 SSTNSKLYDPILYRTLHQLMKKVFIQLIFEFKKLGSKIVYANFNKIIICSQKDSIEDARS 1801
            SSTNSKLYDPILYRTLHQLMKKVFIQLIFEFKKLGSKIVYANFNKIIICSQKDSIEDARS
Sbjct: 1856 SSTNSKLYDPILYRTLHQLMKKVFIQLIFEFKKLGSKIVYANFNKIIICSQKDSIEDARS 1915

Query: 1802 YCNYILAVIKKKELFSWINFKQTNYYHNLLWLNNSNYSGILYFNPLINK 1948
            YCNYILAVIKKKELFSWINFKQTNYYHNLLWLNNSNYSGILYFNPLINK
Sbjct: 1916 YCNYILAVIKKKELFSWINFKQTNYYHNLLWLNNSNYSGILYFNPLINK 1964

 Score =  191 bits (485), Expect = 1e-46
 Identities = 96/131 (73%), Positives = 98/131 (74%)
 Frame = -2

Query: 2446 YXVPYYVXAAXDXNIRVGLWYTVIXXGKXXXXNELTTRVDXPDPKXXAYDIETTXLPLKF 2267
            Y VPYYV AA D NIRVGLWYTVI  G+    NELTTRVD PDPK  AYDIETT LPLKF
Sbjct: 224  YDVPYYVRAAIDLNIRVGLWYTVIKNGRLTTVNELTTRVDRPDPKVLAYDIETTKLPLKF 283

Query: 2266 PXXSXDSIMMIXYMXDKQGYLIVNREIXSEDIKXFKXXPXPEXYGPFXVFNXPDEKSXLX 2087
            P  S DSIMMI YM DKQGYLIVNREI SEDIK F+  P PE YGPF VFN PDEKS L
Sbjct: 284  PDSSIDSIMMISYMLDKQGYLIVNREIVSEDIKDFEYTPKPEYYGPFTVFNEPDEKSVLE 343

Query: 2086 RFFXEIKXXXP 2054
            RFF EIK   P
Sbjct: 344  RFFSEIKREKP 354

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,479,639,683
Number of extensions: 71591270
Number of successful extensions: 166929
Number of sequences better than 10.0: 52
Number of HSP's gapped: 166651
Number of HSP's successfully gapped: 103
Length of query: 815
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 678
Effective length of database: 607,772,281
Effective search space: 412069606518
Effective search space used: 412069606518
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.77  gvh: 0.36  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U15913-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0