Contig-U15904-1
Contig ID Contig-U15904-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15904-1 (Contig-U15904-1Q) /CSM_Contig/Contig-U15904-1Q.Seq.d
CTAAAAAAANTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAANNGGGNTTNAAAAAAAAAANNNNTTTTTTTTNNA
AAAANNA----------CTGTTGGCCTACTGGTTTTCGGAATTTATATAC
TCATTTCAACAGTTTTTTTCGTATTTGGATTTGTTTCATTAGGAAAATTA
ATTAAAGATTTAACAAAAATAATTAATGTTGGAAACGATTATAAAAAATA
TGATTTATATAATATTAAAAATAATAATAAAATTAATAAATACACAAAAT
TAATTTTAAAAAAATTTAATATATCATTGGTTTTATATCGTAACCTTTTA
ATAATATTATTTGTAAAACTTTTAATAATTTCATTCTATAAAATTACAAA
AGATAAAGGTGCAACTTTAATTAATCATGGTCAATATAATTTAATTGCAT
TTACAACTATAATGTTAATTTATTTAATTGGATTTTTATCTTGGTTTTTA
ATTTTTAAAAATTGGACAATTAAAAATACAATAATTAGATTATTTATTTT
AATAATTTTAGTTTATATTTCATTTTCAATTAAAAATATATTTGTTAGTA
AAAATTGGCCAATTGGGATTGATGGTAAACAATTAAAGTTTAAAGATGAA
AGTAGTGGTGGTGGTAAAGTTTGTGAAATTGAAACCAATTTTATAGCATG
GCCATCATTTTTACCAAAAGGATCAACTAGAATTATTACAGGATCAAGTG
AATGTCCAAGTGAAAGTGAACAGTTTTCAAGATTGAACAATGGTATTTTA
ACAATGGATAATTGTTTTGAAGAGAATAAACAATATACATTATCACCAGT
ATTTTGGGAGGAACAAAAAAAGTTTGATACATTTACCAATGATTTTAAAT
ATTATGAAAAATTATTCAAAGGTAAAACACAAACACTTCAATATACTAAA
CCAGTTGAAATTAAACATGAAACTGTAATGGCAATTTGTGGTAATCAAAC
TGAAATTCATTATCATAATATAAAGAATCAACAATTTTATCAAAGAACAT
TGAATAATTTCAATTCACCAAAGATTAAAGAACATGTGGATAAAGTTAAA
TTACCAAATCATCCAGATGAAAAATATAATAAAAAACCAATCGATATTTT
ATTTTTAATGATTGATGCATTATCAAGAGCTCAATTTAAATCTCCAATGC
CAAGTACTTTTGAAACTTTACAATCTATTCAAAATCAAGGTCATTCAAAG
GTTTTTCAATTTTTTAGATATCATTCATTGAAACCATTTTCAGATCCAAA
TACAATGGCAATGTATAATGGTTTTAATAGAGTTGGTTATGATGATATCG
ATTATGAAAATAATATTAATGATCAAGGTGGTATCGGTGGTGGTGGTGGT
GGTGATGGTGATTATCATCATGATGATACTAATACATTTACATGGGAAAA
GAATCCAATGTTTTATCAATCATTTAGAAATGATTCATATGTTACAACTT
GGGTGACTGGTTTATGTCAAGATTGGTTTCAACATTATTTAAAGATGGAT
AAGGAGGTAGGATCAGTAGATCATGAAATGGCATTACCATTCTGTTCACC
ACCAATTACACCCACCAGAGAAACCATTTGGTATCTTTGAAGGTCCTTAC
TCTATACGTCGTCGTTGTTTAGGTGATAAACATGTTCATGAAACCATTTT
TCAATATATCAATCAATTTTGGGAAAACTATAAAGATGTTGGTAAAATAT
TACATACAACCTTTATGGATGGTCATGAAGGTACCAATGAAGTTATTCAA
ATTGCTGATAAAGGTTTTCAAAAGTTTTTAGATAAGGATTTAAGACCAAA
ACTAAATGATACCTTTTTAATTTTAGCCTCTGATCATGGTCAACATATGT
CTGGTTATTATATGTGGTCCAAAGGTGGTAAAATCGAAGTGGCAATGCCA
ATGCTCTATTTGGTCTTACCAAGTTGGTTCCTTGAAAAATACCCTCACCT
CGAACAACAACTATTGGAAAATGAAAATAAACTATCAACACCTTTCCAAT
TGTATGATACCATTAGAACACTTTCAACTTTTCCTGAATTTGGTGGTATC
GATATGAAAGATCCAAATGGTGTTCGTAATGATAATCAAAAAGGTTTTTT
AGGTAAAATTCCTGATGATATAACTTGTGCTCAATTAGGCATACCACATG
ATTTTTGTGTTTGTAAATAAAAATAAAAAATAAAAATAAAAATTTATTTA
TTTAAAGATA

Gap gap included
Contig length 2250
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3001615
End point 2999365
Strand (PLUS/MINUS) MINUS
Number of clones 10
Number of EST 14
Link to clone list U15904
List of clone(s)

est1=CHF860F,1,107
est2=CHP250F,108,653
est3=VFG174F,579,1173
est4=CFH745E,864,2189
est5=VSJ305F,981,1386
est6=CHH467Z,1456,2089
est7=CHL648Z,1498,2113
est8=CHF843Z,1502,2145
est9=CHF860Z,1502,2065
est10=VSJ305Z,1523,2250
est11=CHP250Z,1545,2204
est12=CHG757Z,1588,2101
est13=CHN202Z,1590,2101
est14=VFG174Z,1593,2202
Translated Amino Acid sequence
LKKXFFKKKKKKKKKKKKKKKKXGXKKKXXFFXKX---

---VGLLVFGIYILISTVFFVFGFVSLGKLIKDLTKIINVGNDYKKYDLYNIKNNNKINK
YTKLILKKFNISLVLYRNLLIILFVKLLIISFYKITKDKGATLINHGQYNLIAFTTIMLI
YLIGFLSWFLIFKNWTIKNTIIRLFILIILVYISFSIKNIFVSKNWPIGIDGKQLKFKDE
SSGGGKVCEIETNFIAWPSFLPKGSTRIITGSSECPSESEQFSRLNNGILTMDNCFEENK
QYTLSPVFWEEQKKFDTFTNDFKYYEKLFKGKTQTLQYTKPVEIKHETVMAICGNQTEIH
YHNIKNQQFYQRTLNNFNSPKIKEHVDKVKLPNHPDEKYNKKPIDILFLMIDALSRAQFK
SPMPSTFETLQSIQNQGHSKVFQFFRYHSLKPFSDPNTMAMYNGFNRVGYDDIDYENNIN
DQGGIGGGGGGDGDYHHDDTNTFTWEKNPMFYQSFRNDSYVTTWVTGLCQDWFQHYLKMD
KEVGSVDHEMALPFCSPPITPTRETIWYL*rsllytsslfr**tcs*nhfsiyqsilgkl
*rcw*nitynlygws*ryq*sysnc**rfskvfr*gfktktk*ylfnfsl*swstyvwll
yvvqrw*nrsgnanalfgltklvp*kipsprtttigk*k*tintfpiv*yh*ntfnfs*i
wwyryerskwcs***skrffr*ns**ynlcsirhtt*flcl*ikiknknknlfi*r


Translated Amino Acid sequence (All Frames)
Frame A:
LKKXFFKKKKKKKKKKKKKKKKXGXKKKXXFFXKX---

---llaywfsefiysfqqffsyldlfh*en*lki*qk*lmletiiknmiyiilkiiikli
ntqn*f*knliyhwfyivtf**yyl*nf**fhsiklqkikvql*limvnii*lhlql*c*
fi*ldfylgf*flkigqlkiq*ldylf**f*fifhfqlkiyllvkigqlglmvnn*slkm
kvvvvvkfvklkpil*hghhfyqkdqlellqdqvnvqvkvnsfqd*tmvf*qwiivlkri
nnihyhqyfgrnkkslihlpmilnimknyskvkhkhfnilnqlklnmkl*wqfvviklkf
iiii*rinnfikeh*iisihqrlknmwiklnyqiiqmkniiknqsifyf**lmhyqelnl
nlqcqvllklynlfkikviqrffnfldiih*nhfqiqiqwqcimvlielvmmisimkiil
mikvvsvvvvvvmviiimmilihlhgkriqcfinhlemihmlqlg*lvyvkigfnii*rw
irr*dq*imkwhyhsvhhqlhppekpfgifegpysirrrclgdkhvhetifqyinqfwen
ykdvgkilhttfmdghegtneviqiadkgfqkfldkdlrpklndtflilasdhgqhmsgy
ymwskggkievampmlylvlpswflekyphleqqllenenklstpfqlydtirtlstfpe
fggidmkdpngvrndnqkgflgkipdditcaqlgiphdfcvck*k*kikikiylfkd

Frame B:
*kxfflkkkkkkkkkkkkkkkxxxxkkkxxffxkx---

---cwptgfrnlythfnsffriwicfirkin*rfnknn*cwkrl*ki*fi*y*k***n**
ihkinfkki*yiigfis*pfnniicktfnnfil*nykr*rcnfn*swsi*fnciynynvn
lfnwifilvfnf*kldn*kynn*iiyfnnfslyfifn*kyic**klanwd*w*tikv*r*
k*www*sl*n*nqfysmaiiftkrin*nyyrik*msk*k*tvfkieqwyfnng*lf*re*
tiyiitsilggtkkv*yiyq*f*il*kiiqr*ntntsiy*ts*n*t*ncngnlw*sn*ns
ls*ykestilsknie*fqftkd*rtcg*s*itkssr*ki**ktnryfifnd*ciikssi*
isnakyf*nftiysksrsfkgfsif*isfietifrskyngnv*wf**swl**yrl*k*y*
*srwyrwwwww*w*lss**y*yiymgkesnvlsii*k*ficynlgdwfmsrlvstlfkdg
*ggrisrs*ngitilfttnythqrnhlvslkvltlyvvvv*vinmfmkpffnisinfgkt
ikmlvkyyiqplwmvmkvpmklfkllikvfksf*iri*dqn*mipf*f*plimvniclvi
icgpkvvkskwqcqcsiwsyqvgslkntltsnnnywkmkinyqhlsncmiplehfqlfln
lvvsi*kiqmvfvmiikkvf*vkflmi*lvln*ayhmifvfvnknkk*k*kfiylki

Frame C:
kkxff*kkkkkkkkkkkkkkkxgxxkkxxffxxkx---

---VGLLVFGIYILISTVFFVFGFVSLGKLIKDLTKIINVGNDYKKYDLYNIKNNNKINK
YTKLILKKFNISLVLYRNLLIILFVKLLIISFYKITKDKGATLINHGQYNLIAFTTIMLI
YLIGFLSWFLIFKNWTIKNTIIRLFILIILVYISFSIKNIFVSKNWPIGIDGKQLKFKDE
SSGGGKVCEIETNFIAWPSFLPKGSTRIITGSSECPSESEQFSRLNNGILTMDNCFEENK
QYTLSPVFWEEQKKFDTFTNDFKYYEKLFKGKTQTLQYTKPVEIKHETVMAICGNQTEIH
YHNIKNQQFYQRTLNNFNSPKIKEHVDKVKLPNHPDEKYNKKPIDILFLMIDALSRAQFK
SPMPSTFETLQSIQNQGHSKVFQFFRYHSLKPFSDPNTMAMYNGFNRVGYDDIDYENNIN
DQGGIGGGGGGDGDYHHDDTNTFTWEKNPMFYQSFRNDSYVTTWVTGLCQDWFQHYLKMD
KEVGSVDHEMALPFCSPPITPTRETIWYL*rsllytsslfr**tcs*nhfsiyqsilgkl
*rcw*nitynlygws*ryq*sysnc**rfskvfr*gfktktk*ylfnfsl*swstyvwll
yvvqrw*nrsgnanalfgltklvp*kipsprtttigk*k*tintfpiv*yh*ntfnfs*i
wwyryerskwcs***skrffr*ns**ynlcsirhtt*flcl*ikiknknknlfi*r

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15904-1 (Contig-U15904-1Q)
/CSM_Contig/Contig-U15904-1Q.Seq.d
(2260 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15904-1 (Contig-U15904-1Q) /CSM_Contig/Conti... 1604 0.0
Contig-U02404-1 (Contig-U02404-1Q) /CSM_Contig/Conti... 40 0.015
Contig-U15849-1 (Contig-U15849-1Q) /CSM_Contig/Conti... 38 0.058
Contig-U15680-1 (Contig-U15680-1Q) /CSM_Contig/Conti... 38 0.058
Contig-U15608-1 (Contig-U15608-1Q) /CSM_Contig/Conti... 38 0.058
Contig-U15522-1 (Contig-U15522-1Q) /CSM_Contig/Conti... 38 0.058
Contig-U15028-1 (Contig-U15028-1Q) /CSM_Contig/Conti... 38 0.058
Contig-U14937-1 (Contig-U14937-1Q) /CSM_Contig/Conti... 38 0.058
Contig-U13988-1 (Contig-U13988-1Q) /CSM_Contig/Conti... 38 0.058
Contig-U13916-1 (Contig-U13916-1Q) /CSM_Contig/Conti... 38 0.058

>Contig-U15904-1 (Contig-U15904-1Q) /CSM_Contig/Contig-U15904-1Q.Seq.d
Length = 2260

Score = 1604 bits (809), Expect = 0.0
Identities = 809/809 (100%)
Strand = Plus / Plus


Query: 1405 atggtgattatcatcatgatgatactaatacatttacatgggaaaagaatccaatgtttt 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 atggtgattatcatcatgatgatactaatacatttacatgggaaaagaatccaatgtttt 1464


Query: 1465 atcaatcatttagaaatgattcatatgttacaacttgggtgactggtttatgtcaagatt 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 atcaatcatttagaaatgattcatatgttacaacttgggtgactggtttatgtcaagatt 1524


Query: 1525 ggtttcaacattatttaaagatggataaggaggtaggatcagtagatcatgaaatggcat 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 ggtttcaacattatttaaagatggataaggaggtaggatcagtagatcatgaaatggcat 1584


Query: 1585 taccattctgttcaccaccaattacacccaccagagaaaccatttggtatctttgaaggt 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 taccattctgttcaccaccaattacacccaccagagaaaccatttggtatctttgaaggt 1644


Query: 1645 ccttactctatacgtcgtcgttgtttaggtgataaacatgttcatgaaaccatttttcaa 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 ccttactctatacgtcgtcgttgtttaggtgataaacatgttcatgaaaccatttttcaa 1704


Query: 1705 tatatcaatcaattttgggaaaactataaagatgttggtaaaatattacatacaaccttt 1764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 tatatcaatcaattttgggaaaactataaagatgttggtaaaatattacatacaaccttt 1764


Query: 1765 atggatggtcatgaaggtaccaatgaagttattcaaattgctgataaaggttttcaaaag 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 atggatggtcatgaaggtaccaatgaagttattcaaattgctgataaaggttttcaaaag 1824


Query: 1825 tttttagataaggatttaagaccaaaactaaatgatacctttttaattttagcctctgat 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tttttagataaggatttaagaccaaaactaaatgatacctttttaattttagcctctgat 1884


Query: 1885 catggtcaacatatgtctggttattatatgtggtccaaaggtggtaaaatcgaagtggca 1944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 catggtcaacatatgtctggttattatatgtggtccaaaggtggtaaaatcgaagtggca 1944


Query: 1945 atgccaatgctctatttggtcttaccaagttggttccttgaaaaataccctcacctcgaa 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 atgccaatgctctatttggtcttaccaagttggttccttgaaaaataccctcacctcgaa 2004


Query: 2005 caacaactattggaaaatgaaaataaactatcaacacctttccaattgtatgataccatt 2064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 caacaactattggaaaatgaaaataaactatcaacacctttccaattgtatgataccatt 2064


Query: 2065 agaacactttcaacttttcctgaatttggtggtatcgatatgaaagatccaaatggtgtt 2124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 agaacactttcaacttttcctgaatttggtggtatcgatatgaaagatccaaatggtgtt 2124


Query: 2125 cgtaatgataatcaaaaaggttttttaggtaaaattcctgatgatataacttgtgctcaa 2184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 cgtaatgataatcaaaaaggttttttaggtaaaattcctgatgatataacttgtgctcaa 2184


Query: 2185 ttaggcataccacatgatttttgtgtttg 2213
|||||||||||||||||||||||||||||
Sbjct: 2185 ttaggcataccacatgatttttgtgtttg 2213


Score = 1511 bits (762), Expect = 0.0
Identities = 776/783 (99%)
Strand = Plus / Plus


Query: 594 gttagtaaaaattggccaattgggattgatggtaaacaattaaagtttaaagatgaaagt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gttagtaaaaattggccaattgggattgatggtaaacaattaaagtttaaagatgaaagt 653


Query: 654 agtggtggtggtaaagtttgtgaaattgaaaccaattttatagcatggccatcattttta 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agtggtggtggtaaagtttgtgaaattgaaaccaattttatagcatggccatcattttta 713


Query: 714 ccaaaaggatcaactagaattattacaggatcaagtgaatgtccaagtgaaagtgaacag 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccaaaaggatcaactagaattattacaggatcaagtgaatgtccaagtgaaagtgaacag 773


Query: 774 ttttcaagattgaacaatggtattttaacaatggataattgttttgaagagaataaacaa 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttttcaagattgaacaatggtattttaacaatggataattgttttgaagagaataaacaa 833


Query: 834 tatacattatcaccagtattttgggaggaacnnnnnnngtttgatacatttaccaatgat 893
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 834 tatacattatcaccagtattttgggaggaacaaaaaaagtttgatacatttaccaatgat 893


Query: 894 tttaaatattatgaaaaattattcaaaggtaaaacacaaacacttcaatatactaaacca 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tttaaatattatgaaaaattattcaaaggtaaaacacaaacacttcaatatactaaacca 953


Query: 954 gttgaaattaaacatgaaactgtaatggcaatttgtggtaatcaaactgaaattcattat 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 gttgaaattaaacatgaaactgtaatggcaatttgtggtaatcaaactgaaattcattat 1013


Query: 1014 cataatataaagaatcaacaattttatcaaagaacattgaataatttcaattcaccaaag 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 cataatataaagaatcaacaattttatcaaagaacattgaataatttcaattcaccaaag 1073


Query: 1074 attaaagaacatgtggataaagttaaattaccaaatcatccagatgaaaaatataataaa 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 attaaagaacatgtggataaagttaaattaccaaatcatccagatgaaaaatataataaa 1133


Query: 1134 aaaccaatcgatattttatttttaatgattgatgcattatcaagagctcaatttaaatct 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 aaaccaatcgatattttatttttaatgattgatgcattatcaagagctcaatttaaatct 1193


Query: 1194 ccaatgccaagtacttttgaaactttacaatctattcaaaatcaaggtcattcaaaggtt 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 ccaatgccaagtacttttgaaactttacaatctattcaaaatcaaggtcattcaaaggtt 1253


Query: 1254 tttcaattttttagatatcattcattgaaaccattttcagatccaaatacaatggcaatg 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 tttcaattttttagatatcattcattgaaaccattttcagatccaaatacaatggcaatg 1313


Query: 1314 tataatggttttaatagagttggttatgatgatatcgattatgaaaataatattaatgat 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 tataatggttttaatagagttggttatgatgatatcgattatgaaaataatattaatgat 1373


Query: 1374 caa 1376
|||
Sbjct: 1374 caa 1376


Score = 442 bits (223), Expect = e-123
Identities = 223/223 (100%)
Strand = Plus / Plus


Query: 315 tttaatatatcattggttttatatcgtaaccttttaataatattatttgtaaaactttta 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttaatatatcattggttttatatcgtaaccttttaataatattatttgtaaaactttta 374


Query: 375 ataatttcattctataaaattacaaaagataaaggtgcaactttaattaatcatggtcaa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ataatttcattctataaaattacaaaagataaaggtgcaactttaattaatcatggtcaa 434


Query: 435 tataatttaattgcatttacaactataatgttaatttatttaattggatttttatcttgg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tataatttaattgcatttacaactataatgttaatttatttaattggatttttatcttgg 494


Query: 495 tttttaatttttaaaaattggacaattaaaaatacaataatta 537
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttttaatttttaaaaattggacaattaaaaatacaataatta 537


Score = 196 bits (99), Expect = 1e-49
Identities = 113/120 (94%)
Strand = Plus / Plus


Query: 118 ctgttggcctactggttttcggaatttatatactcatttcaacagnnnnnnncgtatttg 177
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 118 ctgttggcctactggttttcggaatttatatactcatttcaacagtttttttcgtatttg 177


Query: 178 gatttgtttcattaggaaaattaattaaagatttaacaaaaataattaatgttggaaacg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gatttgtttcattaggaaaattaattaaagatttaacaaaaataattaatgttggaaacg 237


Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 2243 tttatttatttaaagata 2260
||||||||||||||||||
Sbjct: 2243 tttatttatttaaagata 2260


Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 1413 tatcatcatgatgata 1428
||||||||||||||||
Sbjct: 1428 tatcatcatgatgata 1413


>Contig-U02404-1 (Contig-U02404-1Q) /CSM_Contig/Contig-U02404-1Q.Seq.d
Length = 101

Score = 40.1 bits (20), Expect = 0.015
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 118 ctgttggcctactggttttc 137
||||||||||||||||||||
Sbjct: 2 ctgttggcctactggttttc 21


>Contig-U15849-1 (Contig-U15849-1Q) /CSM_Contig/Contig-U15849-1Q.Seq.d
Length = 1712

Score = 38.2 bits (19), Expect = 0.058
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 118 ctgttggcctactggtttt 136
|||||||||||||||||||
Sbjct: 3 ctgttggcctactggtttt 21


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,270
Number of Sequences: 8402
Number of extensions: 70270
Number of successful extensions: 8787
Number of sequences better than 10.0: 494
length of query: 2260
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2243
effective length of database: 7,932,708
effective search space: 17793064044
effective search space used: 17793064044
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.27
Homology vs DNA
Query= Contig-U15904-1 (Contig-U15904-1Q) /CSM_Contig/Contig-U15904-1Q.Seq.d
(2260 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU269722) Dictyostelium discoideum vegetative cDNA clone:VS... 1352 0.0 2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 1213 0.0 5
(BJ383290) Dictyostelium discoideum cDNA clone:ddc52c14, 3' ... 1195 0.0 2
(BJ431324) Dictyostelium discoideum cDNA clone:ddv13c19, 3' ... 1170 0.0 1
(BJ378944) Dictyostelium discoideum cDNA clone:ddc33f12, 3' ... 1100 0.0 2
(BJ374809) Dictyostelium discoideum cDNA clone:ddc16j11, 3' ... 1098 0.0 2
(BJ382653) Dictyostelium discoideum cDNA clone:ddc45o12, 3' ... 1035 0.0 2
(BJ379962) Dictyostelium discoideum cDNA clone:ddc36f18, 3' ... 985 0.0 2
(BJ412995) Dictyostelium discoideum cDNA clone:ddv13c19, 5' ... 618 0.0 2
(BJ379040) Dictyostelium discoideum cDNA clone:ddc33h16, 3' ... 936 0.0 2
(BJ381921) Dictyostelium discoideum cDNA clone:ddc43h12, 3' ... 987 0.0 2
(BJ379636) Dictyostelium discoideum cDNA clone:ddc35b15, 3' ... 1011 0.0 1
(BJ384033) Dictyostelium discoideum cDNA clone:ddc48c02, 3' ... 1003 0.0 1
(BJ361238) Dictyostelium discoideum cDNA clone:ddc16j11, 5' ... 959 0.0 2
(AU269721) Dictyostelium discoideum vegetative cDNA clone:VS... 765 0.0 1
(BJ369924) Dictyostelium discoideum cDNA clone:ddc52c14, 5' ... 280 e-122 4
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 5e-04 20
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.006 20
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.012 18
(ER622654) 1093017462268 Global-Ocean-Sampling_GS-36-01-01-2... 44 0.020 3
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 32 0.047 10
(AL844509) Plasmodium falciparum chromosome 13. 40 0.063 19
(AC154028) Mus musculus 10 BAC RP23-246J13 (Roswell Park Can... 52 0.093 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.099 21
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 32 0.13 10
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.14 20
(AM285317) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 0.18 9
(CR940348) Theileria annulata genomic DNA chromosome 2. 34 0.19 2
(AC182128) Bos taurus clone CH240-487P15, WORKING DRAFT SEQU... 38 0.21 2
(AU099698) Homo sapiens cDNA clone:KAT00776, similar to Huma... 42 0.29 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.35 16
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 0.43 12
(DD000807) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH... 48 0.44 3
(AX059492) Sequence 225 from Patent WO0055325. 48 0.44 3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.60 13
(AM436566) Vitis vinifera contig VV78X135355.4, whole genome... 48 0.81 2
(AL137079) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 48 0.83 4
(AR777046) Sequence 201 from patent US 6972197. 48 0.83 4
(ER426248) 1092963751707 Global-Ocean-Sampling_GS-35-01-01-1... 42 0.88 2
(CL093459) ISB1-23I22_Sp6.1 ISB1 Xenopus (Silurana) tropical... 36 1.0 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 1.1 19
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 1.1 17
(AX344683) Sequence 108 from Patent WO0200927. 34 1.1 4
(AM463739) Vitis vinifera contig VV78X231194.10, whole genom... 44 1.1 3
(AF133242) Spiroplasma phage SVTS2, complete genome. 34 1.2 5
(FP016155) Medicago truncatula chromosome 5 clone mte1-16i20... 34 1.3 9
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 32 1.3 15
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 30 1.4 19
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 1.4 13
(AL161514) Arabidopsis thaliana DNA chromosome 4, contig fra... 48 1.5 1
(AF072897) Arabidopsis thaliana BAC T8A17 chromosome IV, com... 48 1.5 1
(CT963117) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.5 1
(AJ836173) Arabidopsis thaliana T-DNA flanking sequence, lef... 48 1.5 1
(AJ599657) Arabidopsis thaliana T-DNA flanking sequence, lef... 48 1.5 1
(AJ525903) Arabidopsis thaliana T-DNA flanking sequence, lef... 48 1.5 1
(CJ445297) Macaca fascicularis mRNA, clone: QflA-10434, 5' e... 48 1.5 1
(AX347157) Sequence 2228 from Patent WO0200928. 44 1.6 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 30 1.8 20
(BM161495) EST564018 PyBS Plasmodium yoelii yoelii cDNA clon... 42 2.1 2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 2.2 14
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 2.2 17
(BM168467) EST570990 PyBS Plasmodium yoelii yoelii cDNA clon... 42 2.3 2
(AC232746) Monodelphis domestica clone VMRC18-451D24, WORKIN... 46 2.4 5
(EK382524) 1095469467960 Global-Ocean-Sampling_GS-31-01-01-1... 34 2.6 3
(CL834490) OR_CBa0057O22.f OR_CBa Oryza rufipogon genomic cl... 38 2.7 2
(CJ484597) Macaca fascicularis mRNA, clone: QtsA-12144, 5' e... 38 2.7 3
(BZ517383) BOMRS92TR BO_2_3_KB Brassica oleracea genomic clo... 36 2.7 2
(AC096466) Rattus norvegicus clone CH230-84G6, *** SEQUENCIN... 34 2.8 2
(AC111923) Rattus norvegicus clone CH230-23G1, *** SEQUENCIN... 32 2.8 2
(AC102985) Rattus norvegicus clone CH230-155C17, *** SEQUENC... 32 2.8 2
(AC142135) Rattus norvegicus clone CH230-478F3, WORKING DRAF... 34 2.8 2
(CJ449016) Macaca fascicularis mRNA, clone: QflA-14415, 5' e... 38 2.8 2
(AC215985) Zea mays chromosome 1 clone CH201-197D3; ZMMBBc01... 36 2.9 2
(EK437199) 1095521077793 Global-Ocean-Sampling_GS-31-01-01-1... 34 2.9 4
(EK047076) 1092959637716 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.0 2
(AY863213) Smittium culisetae mitochondrion, complete genome. 36 3.1 7
(BJ365084) Dictyostelium discoideum cDNA clone:ddc34h05, 5' ... 40 3.1 3
(EK364003) 1095469389602 Global-Ocean-Sampling_GS-31-01-01-1... 34 3.1 3
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 34 3.4 14
(BH133292) ENTMY22TF Entamoeba histolytica Sheared DNA Entam... 32 3.6 3
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 3.6 15
(BZ385968) EINCK90TR EI_10_12_KB Entamoeba invadens genomic ... 34 3.7 3
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 3.8 14
(AG444620) Mus musculus molossinus DNA, clone:MSMg01-327D04.... 34 3.8 2
(EK094502) 1092962026476 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.8 2
(EK128871) 1092999600917 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.8 2
(EK107776) 1092963069582 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.8 2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 4.4 16
(CR450833) Zebrafish DNA sequence from clone DKEY-31J12 in l... 38 4.5 8
(AF310895) Dictyostelium discoideum RIM (rimA) and RacI (rac... 44 4.9 2
(CR786578) Zebrafish DNA sequence from clone DKEY-231L1 in l... 36 4.9 10
(EK109008) 1092963082722 Global-Ocean-Sampling_GS-31-01-01-1... 34 4.9 4
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 5.1 9
(AC134643) Rattus norvegicus clone CH230-254O4, *** SEQUENCI... 40 5.1 8
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 5.5 12
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 34 5.6 11
(EF568108) Glossina pallidipes salivary gland hypertrophy vi... 34 5.6 13
(BX322620) Zebrafish DNA sequence from clone DKEY-49L3 in li... 46 5.8 1
(AC168274) Mus musculus BAC RP23-229B1 (Roswell Park Cancer... 46 5.8 1
(AC156952) Mus musculus 10 BAC RP24-385D2 (Roswell Park Canc... 46 5.8 1
(AC183800) Pan troglodytes BAC clone CH251-307J23 from chrom... 46 5.8 1
(AC172374) Pan troglodytes BAC clone CH251-119H6 from chromo... 46 5.8 1
(AC156805) Pan troglodytes BAC clone CH251-830G14 from chrom... 46 5.8 1
(Z97335) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c... 46 5.8 1
(AM429220) Vitis vinifera contig VV78X103700.4, whole genome... 46 5.8 1
(AL161538) Arabidopsis thaliana DNA chromosome 4, contig fra... 46 5.8 1
(AC174340) Medicago truncatula clone mth2-161g1, complete se... 46 5.8 1
(DJ386559) Diagnosis of Diseases Associated with Metastasis. 46 5.8 1
(BD388652) Physiologically active protein. 46 5.8 1
(AX508123) Sequence 2818 from Patent WO0216655. 46 5.8 1
(AX281355) Sequence 19 from Patent WO0177376. 46 5.8 1
(AC092851) Homo sapiens 12 BAC RP11-459D22 (Roswell Park Can... 46 5.8 1
(AC068954) Homo sapiens chromosome 8, clone RP11-45A11, comp... 46 5.8 1
(AC012444) Homo sapiens BAC clone RP11-41C17 from 2, complet... 46 5.8 1
(AC162236) Bos taurus clone CH240-110E2, WORKING DRAFT SEQUE... 46 5.8 1
(AC068832) Homo sapiens chromosome 2 clone RP11-333M6 map 2,... 46 5.8 1
(CU467513) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.8 1
(CU137696) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.8 1
(AC232745) Monodelphis domestica clone VMRC18-278H20, WORKIN... 46 5.8 1
(AC229709) Medicago truncatula clone mth2-2f22, WORKING DRAF... 46 5.8 1
(AC220646) Bos taurus clone CH240-350K24, WORKING DRAFT SEQU... 46 5.8 1
(AC174826) Cavia porcellus clone CH234-426A13, WORKING DRAFT... 46 5.8 1
(AC169436) Bos taurus clone CH240-190N16, WORKING DRAFT SEQU... 46 5.8 1
(ER416733) 1092963674337 Global-Ocean-Sampling_GS-35-01-01-1... 46 5.8 1
(EK124401) 1092970301335 Global-Ocean-Sampling_GS-31-01-01-1... 46 5.8 1
(EJ578861) 1092960134983 Global-Ocean-Sampling_GS-29-01-01-1... 46 5.8 1
(EI728907) CHORI51410G09TR BAC library from the primary brea... 46 5.8 1
(DU873393) 153496 Tomato HindIII BAC Library Solanum lycoper... 46 5.8 1
(CT137225) Sus scrofa genomic clone CH242-222C10, genomic su... 46 5.8 1
(ES403637) MUT04-C23.y1d-s SHGC-MUT Mytilus californianus cD... 46 5.8 1
(DY260699) KN0AAP13YF11FM1 Fruit-TF Citrus clementina cDNA 5... 46 5.8 1
(CJ459238) Macaca fascicularis mRNA, clone: QmoA-11401, 5' e... 46 5.8 1
(CD543903) B0253B05-3 NIA Mouse Embryonic Germ Cell cDNA Lib... 46 5.8 1
(FE957295) Aaem04937 Antheraea assama 96 hours embryo cDNA l... 46 5.8 1
(FE195208) B185B10 Antarctic fish Dissostichus mawsoni adult... 46 5.8 1
(D87215) Clostridium histolyticum orfluG, colG, mscL, orf2dG... 46 5.8 1
(AM479416) Vitis vinifera contig VV78X092863.7, whole genome... 36 6.3 5
(CU457730) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 6.4 11
(CI028779) Oryza sativa Japonica Group cDNA, clone: 009-M056... 38 6.8 2
(CR578025) Xenopus tropicalis EST, clone THdA032k14 5'. 40 6.8 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 30 7.2 18
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8... 34 7.2 15
(AL844506) Plasmodium falciparum chromosome 7. 34 7.2 17
(AC147533) Macropus eugenii clone ME_KBa-311C4, complete seq... 40 7.6 5
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 7.6 23
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 40 7.6 13
(AC176089) Strongylocentrotus purpuratus clone R3-24B14, WOR... 38 8.7 6
(AM473368) Vitis vinifera, whole genome shotgun sequence, co... 34 8.9 4
(CU655854) P.sativum DNA sequence *** SEQUENCING IN PROGRESS... 38 8.9 8
(AC183430) Medicago truncatula chromosome 8 clone mth2-176i2... 38 9.3 7
(CW950038) TcB35.1_D10_SP6 Tribolium BAC library Tribolium c... 36 9.4 3
(CJ452061) Macaca fascicularis mRNA, clone: QflA-17702, 5' e... 36 9.4 3
(DX467814) Cpl09786 Papaya Genomic DNA BAC Library Carica pa... 38 9.5 2

>(AU269722) Dictyostelium discoideum vegetative cDNA clone:VSJ305, 3'
end single read.
Length = 728

Score = 1352 bits (682), Expect(2) = 0.0
Identities = 682/682 (100%)
Strand = Plus / Plus


Query: 1533 cattatttaaagatggataaggaggtaggatcagtagatcatgaaatggcattaccattc 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattatttaaagatggataaggaggtaggatcagtagatcatgaaatggcattaccattc 60


Query: 1593 tgttcaccaccaattacacccaccagagaaaccatttggtatctttgaaggtccttactc 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttcaccaccaattacacccaccagagaaaccatttggtatctttgaaggtccttactc 120


Query: 1653 tatacgtcgtcgttgtttaggtgataaacatgttcatgaaaccatttttcaatatatcaa 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatacgtcgtcgttgtttaggtgataaacatgttcatgaaaccatttttcaatatatcaa 180


Query: 1713 tcaattttgggaaaactataaagatgttggtaaaatattacatacaacctttatggatgg 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaattttgggaaaactataaagatgttggtaaaatattacatacaacctttatggatgg 240


Query: 1773 tcatgaaggtaccaatgaagttattcaaattgctgataaaggttttcaaaagtttttaga 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcatgaaggtaccaatgaagttattcaaattgctgataaaggttttcaaaagtttttaga 300


Query: 1833 taaggatttaagaccaaaactaaatgatacctttttaattttagcctctgatcatggtca 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaggatttaagaccaaaactaaatgatacctttttaattttagcctctgatcatggtca 360


Query: 1893 acatatgtctggttattatatgtggtccaaaggtggtaaaatcgaagtggcaatgccaat 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acatatgtctggttattatatgtggtccaaaggtggtaaaatcgaagtggcaatgccaat 420


Query: 1953 gctctatttggtcttaccaagttggttccttgaaaaataccctcacctcgaacaacaact 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gctctatttggtcttaccaagttggttccttgaaaaataccctcacctcgaacaacaact 480


Query: 2013 attggaaaatgaaaataaactatcaacacctttccaattgtatgataccattagaacact 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attggaaaatgaaaataaactatcaacacctttccaattgtatgataccattagaacact 540


Query: 2073 ttcaacttttcctgaatttggtggtatcgatatgaaagatccaaatggtgttcgtaatga 2132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcaacttttcctgaatttggtggtatcgatatgaaagatccaaatggtgttcgtaatga 600


Query: 2133 taatcaaaaaggttttttaggtaaaattcctgatgatataacttgtgctcaattaggcat 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taatcaaaaaggttttttaggtaaaattcctgatgatataacttgtgctcaattaggcat 660


Query: 2193 accacatgatttttgtgtttgt 2214
||||||||||||||||||||||
Sbjct: 661 accacatgatttttgtgtttgt 682

Score = 36.2 bits (18), Expect(2) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 2243 tttatttatttaaagata 2260
||||||||||||||||||
Sbjct: 711 tttatttatttaaagata 728

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,487,175,888
Number of extensions: 166367959
Number of successful extensions: 14166057
Number of sequences better than 10.0: 160
Length of query: 2260
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 2236
Effective length of database: 96,409,374,237
Effective search space: 215571360793932
Effective search space used: 215571360793932
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U15904-1 (Contig-U15904-1Q) /CSM_Contig/Contig-U15904-1Q.Seq.d
(2260 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE014134_1655(AE014134|pid:none) Drosophila melanogaster chromos... 69 6e-10
T20997(T20997) hypothetical protein F15H10.7 - Caenorhabditis el... 67 2e-09
AE014134_3298(AE014134|pid:none) Drosophila melanogaster chromos... 62 9e-08
AY058755_1(AY058755|pid:none) Drosophila melanogaster SD01790 fu... 60 3e-07
AE014297_2080(AE014297|pid:none) Drosophila melanogaster chromos... 60 3e-07
Z95559_2(Z95559|pid:none) Caenorhabditis elegans YAC Y41E3, comp... 58 1e-06
AE014134_2107(AE014134|pid:none) Drosophila melanogaster chromos... 57 3e-06
BT010246_1(BT010246|pid:none) Drosophila melanogaster RE42568 fu... 56 5e-06
AE014297_4415(AE014297|pid:none) Drosophila melanogaster chromos... 56 5e-06
AY089270_1(AY089270|pid:none) Drosophila melanogaster AT07326 fu... 56 5e-06
AE014134_3658(AE014134|pid:none) Drosophila melanogaster chromos... 56 5e-06
BT022768_1(BT022768|pid:none) Drosophila melanogaster IP13869 fu... 53 4e-05
T23880(T23880)hypothetical protein R03G8.3 - Caenorhabditis eleg... 52 1e-04
AE014297_2986(AE014297|pid:none) Drosophila melanogaster chromos... 51 2e-04
Z77133_6(Z77133|pid:none) Caenorhabditis elegans Cosmid K03A11, ... 50 5e-04
FN357388_23(FN357388|pid:none) Schistosoma mansoni genome sequen... 47 0.003
AY122064_1(AY122064|pid:none) Drosophila melanogaster AT07222 fu... 47 0.003
AE014297_1444(AE014297|pid:none) Drosophila melanogaster chromos... 47 0.003
AY113227_1(AY113227|pid:none) Drosophila melanogaster AT09966 fu... 47 0.004
AE014134_499(AE014134|pid:none) Drosophila melanogaster chromoso... 47 0.004
AE014134_305(AE014134|pid:none) Drosophila melanogaster chromoso... 45 0.015
AY113247_1(AY113247|pid:none) Drosophila melanogaster AT13272 fu... 45 0.015
AL844505_233(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.63
AE014296_1528(AE014296|pid:none) Drosophila melanogaster chromos... 39 0.82
(A3DNI3) RecName: Full=Alanyl-tRNA synthetase; EC=6.1.1... 37 2.4
AL844506_217(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 37 2.4
CP000753_270(CP000753|pid:none) Shewanella baltica OS185, comple... 37 2.4
CP001252_270(CP001252|pid:none) Shewanella baltica OS223, comple... 37 2.4
T23523(T23523) hypothetical protein K09A11.3 - Caenorhabditis el... 37 3.1
EU880658_1(EU880658|pid:none) Donacia impressa voucher Donaciina... 37 4.1
EU616977_1(EU616977|pid:none) Nirripirti melroseensis isolate AB... 36 5.3
AF013583_2(AF013583|pid:none) Escherichia coli putative O-antige... 36 6.9
AF309302_1(AF309302|pid:none) Nebrioporus baeticus cytochrome ox... 36 6.9
AY250963_1(AY250963|pid:none) Nebrioporus ceresyi cytochrome oxi... 36 6.9
CP000444_3727(CP000444|pid:none) Shewanella sp. MR-7, complete g... 36 6.9
CU207211_3146(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 36 6.9
AE014299_4335(AE014299|pid:none) Shewanella oneidensis MR-1, com... 36 6.9
CP000446_266(CP000446|pid:none) Shewanella sp. MR-4, complete ge... 36 6.9
AM945635_1(AM945635|pid:none) Copelatus sp. MB 785 mitochondrial... 35 9.1
CP000469_267(CP000469|pid:none) Shewanella sp. ANA-3, complete g... 35 9.1
EU616968_1(EU616968|pid:none) Nirripirti innouendyensis isolate ... 35 9.1
AF309307_1(AF309307|pid:none) Deronectes abnormicollis cytochrom... 35 9.1
DQ155798_1(DQ155798|pid:none) Subcoccinella vigintiquatuorpuncta... 35 9.1
(Q6BZ57) RecName: Full=GPI ethanolamine phosphate transferase 2;... 35 9.1
AE014134_1654(AE014134|pid:none) Drosophila melanogaster chromos... 35 9.1

>AE014134_1655(AE014134|pid:none) Drosophila melanogaster chromosome
2L, complete sequence.
Length = 618

Score = 69.3 bits (168), Expect = 6e-10
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Frame = +1

Query: 1645 PYSIRRRCLGDKHVHETIFQYINQFWENYKDVGKILHTTFMDGHEGTNEVIQIA---DKG 1815
P + + CLG + IF Y QF + + + + F H +++ ++ K
Sbjct: 300 PGCVMKYCLGRRLASSYIFDYCRQFMQRFV-ADRPIWGMFWTNHYSHDDLFMLSAMQHKI 358

Query: 1816 FQKFLDKDLRPKLNDTFLILASDHGQHMSGYYMWSKGGKIEVAMPMLYLVLPSWFLEKYP 1995
+ L + T +I SDHG G M++K +E +PM+++ LP WF +KYP
Sbjct: 359 LEDLLSFEKDGVFEHTIMIFFSDHGARF-GPLMYTKEAFLEERLPMMFIYLPPWFRKKYP 417

Query: 1996 HXXXXXXXXXXKLSTPFQLYDTIRTLSTFPEFGGIDMKDPNGVRNDNQ-KGFLGKIPDDI 2172
+LS+ F LY+T++ + ++D + Q + +P+
Sbjct: 418 RYVEALAQNQNRLSSNFDLYNTLKHIINIEGL----VEDTKWSYDCPQCQSLFYPLPESR 473

Query: 2173 TCAQLGIPHDFCVC 2214
+C++ IP +C C
Sbjct: 474 SCSEAAIPEAYCTC 487

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,026,080,978
Number of extensions: 59272674
Number of successful extensions: 175325
Number of sequences better than 10.0: 45
Number of HSP's gapped: 175110
Number of HSP's successfully gapped: 45
Length of query: 753
Length of database: 1,051,180,864
Length adjustment: 136
Effective length of query: 617
Effective length of database: 611,008,840
Effective search space: 376992454280
Effective search space used: 376992454280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.03 gvh: 0.62 alm: 0.18 top: 0.13 tms: 0.27 mit: 0.30 mip: 0.00
nuc: 0.97 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: plasma membrane
16.0 %: nuclear
16.0 %: endoplasmic reticulum
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: cytoplasmic
4.0 %: peroxisomal

>> prediction for Contig-U15904-1 is pla

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 7
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0