Contig-U15904-1 |
Contig ID |
Contig-U15904-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2250 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
3001615 |
End point |
2999365 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
10 |
Number of EST |
14 |
Link to clone list |
U15904 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 2.27 |
Homology vs DNA |
Query= Contig-U15904-1 (Contig-U15904-1Q) /CSM_Contig/Contig-U15904-1Q.Seq.d (2260 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU269722) Dictyostelium discoideum vegetative cDNA clone:VS... 1352 0.0 2 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 1213 0.0 5 (BJ383290) Dictyostelium discoideum cDNA clone:ddc52c14, 3' ... 1195 0.0 2 (BJ431324) Dictyostelium discoideum cDNA clone:ddv13c19, 3' ... 1170 0.0 1 (BJ378944) Dictyostelium discoideum cDNA clone:ddc33f12, 3' ... 1100 0.0 2 (BJ374809) Dictyostelium discoideum cDNA clone:ddc16j11, 3' ... 1098 0.0 2 (BJ382653) Dictyostelium discoideum cDNA clone:ddc45o12, 3' ... 1035 0.0 2 (BJ379962) Dictyostelium discoideum cDNA clone:ddc36f18, 3' ... 985 0.0 2 (BJ412995) Dictyostelium discoideum cDNA clone:ddv13c19, 5' ... 618 0.0 2 (BJ379040) Dictyostelium discoideum cDNA clone:ddc33h16, 3' ... 936 0.0 2 (BJ381921) Dictyostelium discoideum cDNA clone:ddc43h12, 3' ... 987 0.0 2 (BJ379636) Dictyostelium discoideum cDNA clone:ddc35b15, 3' ... 1011 0.0 1 (BJ384033) Dictyostelium discoideum cDNA clone:ddc48c02, 3' ... 1003 0.0 1 (BJ361238) Dictyostelium discoideum cDNA clone:ddc16j11, 5' ... 959 0.0 2 (AU269721) Dictyostelium discoideum vegetative cDNA clone:VS... 765 0.0 1 (BJ369924) Dictyostelium discoideum cDNA clone:ddc52c14, 5' ... 280 e-122 4 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 5e-04 20 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.006 20 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.012 18 (ER622654) 1093017462268 Global-Ocean-Sampling_GS-36-01-01-2... 44 0.020 3 (EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 32 0.047 10 (AL844509) Plasmodium falciparum chromosome 13. 40 0.063 19 (AC154028) Mus musculus 10 BAC RP23-246J13 (Roswell Park Can... 52 0.093 1 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.099 21 (AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 32 0.13 10 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.14 20 (AM285317) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 0.18 9 (CR940348) Theileria annulata genomic DNA chromosome 2. 34 0.19 2 (AC182128) Bos taurus clone CH240-487P15, WORKING DRAFT SEQU... 38 0.21 2 (AU099698) Homo sapiens cDNA clone:KAT00776, similar to Huma... 42 0.29 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.35 16 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 0.43 12 (DD000807) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH... 48 0.44 3 (AX059492) Sequence 225 from Patent WO0055325. 48 0.44 3 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.60 13 (AM436566) Vitis vinifera contig VV78X135355.4, whole genome... 48 0.81 2 (AL137079) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 48 0.83 4 (AR777046) Sequence 201 from patent US 6972197. 48 0.83 4 (ER426248) 1092963751707 Global-Ocean-Sampling_GS-35-01-01-1... 42 0.88 2 (CL093459) ISB1-23I22_Sp6.1 ISB1 Xenopus (Silurana) tropical... 36 1.0 2 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 1.1 19 (AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 1.1 17 (AX344683) Sequence 108 from Patent WO0200927. 34 1.1 4 (AM463739) Vitis vinifera contig VV78X231194.10, whole genom... 44 1.1 3 (AF133242) Spiroplasma phage SVTS2, complete genome. 34 1.2 5 (FP016155) Medicago truncatula chromosome 5 clone mte1-16i20... 34 1.3 9 (AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 32 1.3 15 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 30 1.4 19 (AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 1.4 13 (AL161514) Arabidopsis thaliana DNA chromosome 4, contig fra... 48 1.5 1 (AF072897) Arabidopsis thaliana BAC T8A17 chromosome IV, com... 48 1.5 1 (CT963117) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.5 1 (AJ836173) Arabidopsis thaliana T-DNA flanking sequence, lef... 48 1.5 1 (AJ599657) Arabidopsis thaliana T-DNA flanking sequence, lef... 48 1.5 1 (AJ525903) Arabidopsis thaliana T-DNA flanking sequence, lef... 48 1.5 1 (CJ445297) Macaca fascicularis mRNA, clone: QflA-10434, 5' e... 48 1.5 1 (AX347157) Sequence 2228 from Patent WO0200928. 44 1.6 3 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 30 1.8 20 (BM161495) EST564018 PyBS Plasmodium yoelii yoelii cDNA clon... 42 2.1 2 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 2.2 14 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 2.2 17 (BM168467) EST570990 PyBS Plasmodium yoelii yoelii cDNA clon... 42 2.3 2 (AC232746) Monodelphis domestica clone VMRC18-451D24, WORKIN... 46 2.4 5 (EK382524) 1095469467960 Global-Ocean-Sampling_GS-31-01-01-1... 34 2.6 3 (CL834490) OR_CBa0057O22.f OR_CBa Oryza rufipogon genomic cl... 38 2.7 2 (CJ484597) Macaca fascicularis mRNA, clone: QtsA-12144, 5' e... 38 2.7 3 (BZ517383) BOMRS92TR BO_2_3_KB Brassica oleracea genomic clo... 36 2.7 2 (AC096466) Rattus norvegicus clone CH230-84G6, *** SEQUENCIN... 34 2.8 2 (AC111923) Rattus norvegicus clone CH230-23G1, *** SEQUENCIN... 32 2.8 2 (AC102985) Rattus norvegicus clone CH230-155C17, *** SEQUENC... 32 2.8 2 (AC142135) Rattus norvegicus clone CH230-478F3, WORKING DRAF... 34 2.8 2 (CJ449016) Macaca fascicularis mRNA, clone: QflA-14415, 5' e... 38 2.8 2 (AC215985) Zea mays chromosome 1 clone CH201-197D3; ZMMBBc01... 36 2.9 2 (EK437199) 1095521077793 Global-Ocean-Sampling_GS-31-01-01-1... 34 2.9 4 (EK047076) 1092959637716 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.0 2 (AY863213) Smittium culisetae mitochondrion, complete genome. 36 3.1 7 (BJ365084) Dictyostelium discoideum cDNA clone:ddc34h05, 5' ... 40 3.1 3 (EK364003) 1095469389602 Global-Ocean-Sampling_GS-31-01-01-1... 34 3.1 3 (AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 34 3.4 14 (BH133292) ENTMY22TF Entamoeba histolytica Sheared DNA Entam... 32 3.6 3 (AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 3.6 15 (BZ385968) EINCK90TR EI_10_12_KB Entamoeba invadens genomic ... 34 3.7 3 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 3.8 14 (AG444620) Mus musculus molossinus DNA, clone:MSMg01-327D04.... 34 3.8 2 (EK094502) 1092962026476 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.8 2 (EK128871) 1092999600917 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.8 2 (EK107776) 1092963069582 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.8 2 (AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 4.4 16 (CR450833) Zebrafish DNA sequence from clone DKEY-31J12 in l... 38 4.5 8 (AF310895) Dictyostelium discoideum RIM (rimA) and RacI (rac... 44 4.9 2 (CR786578) Zebrafish DNA sequence from clone DKEY-231L1 in l... 36 4.9 10 (EK109008) 1092963082722 Global-Ocean-Sampling_GS-31-01-01-1... 34 4.9 4 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 5.1 9 (AC134643) Rattus norvegicus clone CH230-254O4, *** SEQUENCI... 40 5.1 8 (AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 5.5 12 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 34 5.6 11 (EF568108) Glossina pallidipes salivary gland hypertrophy vi... 34 5.6 13 (BX322620) Zebrafish DNA sequence from clone DKEY-49L3 in li... 46 5.8 1 (AC168274) Mus musculus BAC RP23-229B1 (Roswell Park Cancer... 46 5.8 1 (AC156952) Mus musculus 10 BAC RP24-385D2 (Roswell Park Canc... 46 5.8 1 (AC183800) Pan troglodytes BAC clone CH251-307J23 from chrom... 46 5.8 1 (AC172374) Pan troglodytes BAC clone CH251-119H6 from chromo... 46 5.8 1 (AC156805) Pan troglodytes BAC clone CH251-830G14 from chrom... 46 5.8 1 (Z97335) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c... 46 5.8 1 (AM429220) Vitis vinifera contig VV78X103700.4, whole genome... 46 5.8 1 (AL161538) Arabidopsis thaliana DNA chromosome 4, contig fra... 46 5.8 1 (AC174340) Medicago truncatula clone mth2-161g1, complete se... 46 5.8 1 (DJ386559) Diagnosis of Diseases Associated with Metastasis. 46 5.8 1 (BD388652) Physiologically active protein. 46 5.8 1 (AX508123) Sequence 2818 from Patent WO0216655. 46 5.8 1 (AX281355) Sequence 19 from Patent WO0177376. 46 5.8 1 (AC092851) Homo sapiens 12 BAC RP11-459D22 (Roswell Park Can... 46 5.8 1 (AC068954) Homo sapiens chromosome 8, clone RP11-45A11, comp... 46 5.8 1 (AC012444) Homo sapiens BAC clone RP11-41C17 from 2, complet... 46 5.8 1 (AC162236) Bos taurus clone CH240-110E2, WORKING DRAFT SEQUE... 46 5.8 1 (AC068832) Homo sapiens chromosome 2 clone RP11-333M6 map 2,... 46 5.8 1 (CU467513) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.8 1 (CU137696) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.8 1 (AC232745) Monodelphis domestica clone VMRC18-278H20, WORKIN... 46 5.8 1 (AC229709) Medicago truncatula clone mth2-2f22, WORKING DRAF... 46 5.8 1 (AC220646) Bos taurus clone CH240-350K24, WORKING DRAFT SEQU... 46 5.8 1 (AC174826) Cavia porcellus clone CH234-426A13, WORKING DRAFT... 46 5.8 1 (AC169436) Bos taurus clone CH240-190N16, WORKING DRAFT SEQU... 46 5.8 1 (ER416733) 1092963674337 Global-Ocean-Sampling_GS-35-01-01-1... 46 5.8 1 (EK124401) 1092970301335 Global-Ocean-Sampling_GS-31-01-01-1... 46 5.8 1 (EJ578861) 1092960134983 Global-Ocean-Sampling_GS-29-01-01-1... 46 5.8 1 (EI728907) CHORI51410G09TR BAC library from the primary brea... 46 5.8 1 (DU873393) 153496 Tomato HindIII BAC Library Solanum lycoper... 46 5.8 1 (CT137225) Sus scrofa genomic clone CH242-222C10, genomic su... 46 5.8 1 (ES403637) MUT04-C23.y1d-s SHGC-MUT Mytilus californianus cD... 46 5.8 1 (DY260699) KN0AAP13YF11FM1 Fruit-TF Citrus clementina cDNA 5... 46 5.8 1 (CJ459238) Macaca fascicularis mRNA, clone: QmoA-11401, 5' e... 46 5.8 1 (CD543903) B0253B05-3 NIA Mouse Embryonic Germ Cell cDNA Lib... 46 5.8 1 (FE957295) Aaem04937 Antheraea assama 96 hours embryo cDNA l... 46 5.8 1 (FE195208) B185B10 Antarctic fish Dissostichus mawsoni adult... 46 5.8 1 (D87215) Clostridium histolyticum orfluG, colG, mscL, orf2dG... 46 5.8 1 (AM479416) Vitis vinifera contig VV78X092863.7, whole genome... 36 6.3 5 (CU457730) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 6.4 11 (CI028779) Oryza sativa Japonica Group cDNA, clone: 009-M056... 38 6.8 2 (CR578025) Xenopus tropicalis EST, clone THdA032k14 5'. 40 6.8 2 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 30 7.2 18 (AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8... 34 7.2 15 (AL844506) Plasmodium falciparum chromosome 7. 34 7.2 17 (AC147533) Macropus eugenii clone ME_KBa-311C4, complete seq... 40 7.6 5 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 7.6 23 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 40 7.6 13 (AC176089) Strongylocentrotus purpuratus clone R3-24B14, WOR... 38 8.7 6 (AM473368) Vitis vinifera, whole genome shotgun sequence, co... 34 8.9 4 (CU655854) P.sativum DNA sequence *** SEQUENCING IN PROGRESS... 38 8.9 8 (AC183430) Medicago truncatula chromosome 8 clone mth2-176i2... 38 9.3 7 (CW950038) TcB35.1_D10_SP6 Tribolium BAC library Tribolium c... 36 9.4 3 (CJ452061) Macaca fascicularis mRNA, clone: QflA-17702, 5' e... 36 9.4 3 (DX467814) Cpl09786 Papaya Genomic DNA BAC Library Carica pa... 38 9.5 2
>(AU269722) Dictyostelium discoideum vegetative cDNA clone:VSJ305, 3' end single read. Length = 728
Score = 1352 bits (682), Expect(2) = 0.0 Identities = 682/682 (100%) Strand = Plus / Plus
Query: 1533 cattatttaaagatggataaggaggtaggatcagtagatcatgaaatggcattaccattc 1592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cattatttaaagatggataaggaggtaggatcagtagatcatgaaatggcattaccattc 60
Query: 1593 tgttcaccaccaattacacccaccagagaaaccatttggtatctttgaaggtccttactc 1652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgttcaccaccaattacacccaccagagaaaccatttggtatctttgaaggtccttactc 120
Query: 1653 tatacgtcgtcgttgtttaggtgataaacatgttcatgaaaccatttttcaatatatcaa 1712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tatacgtcgtcgttgtttaggtgataaacatgttcatgaaaccatttttcaatatatcaa 180
Query: 1713 tcaattttgggaaaactataaagatgttggtaaaatattacatacaacctttatggatgg 1772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tcaattttgggaaaactataaagatgttggtaaaatattacatacaacctttatggatgg 240
Query: 1773 tcatgaaggtaccaatgaagttattcaaattgctgataaaggttttcaaaagtttttaga 1832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tcatgaaggtaccaatgaagttattcaaattgctgataaaggttttcaaaagtttttaga 300
Query: 1833 taaggatttaagaccaaaactaaatgatacctttttaattttagcctctgatcatggtca 1892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 taaggatttaagaccaaaactaaatgatacctttttaattttagcctctgatcatggtca 360
Query: 1893 acatatgtctggttattatatgtggtccaaaggtggtaaaatcgaagtggcaatgccaat 1952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 acatatgtctggttattatatgtggtccaaaggtggtaaaatcgaagtggcaatgccaat 420
Query: 1953 gctctatttggtcttaccaagttggttccttgaaaaataccctcacctcgaacaacaact 2012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gctctatttggtcttaccaagttggttccttgaaaaataccctcacctcgaacaacaact 480
Query: 2013 attggaaaatgaaaataaactatcaacacctttccaattgtatgataccattagaacact 2072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 attggaaaatgaaaataaactatcaacacctttccaattgtatgataccattagaacact 540
Query: 2073 ttcaacttttcctgaatttggtggtatcgatatgaaagatccaaatggtgttcgtaatga 2132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 ttcaacttttcctgaatttggtggtatcgatatgaaagatccaaatggtgttcgtaatga 600
Query: 2133 taatcaaaaaggttttttaggtaaaattcctgatgatataacttgtgctcaattaggcat 2192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 taatcaaaaaggttttttaggtaaaattcctgatgatataacttgtgctcaattaggcat 660
Query: 2193 accacatgatttttgtgtttgt 2214 |||||||||||||||||||||| Sbjct: 661 accacatgatttttgtgtttgt 682
Score = 36.2 bits (18), Expect(2) = 0.0 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 2243 tttatttatttaaagata 2260 |||||||||||||||||| Sbjct: 711 tttatttatttaaagata 728
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 2,487,175,888 Number of extensions: 166367959 Number of successful extensions: 14166057 Number of sequences better than 10.0: 160 Length of query: 2260 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 2236 Effective length of database: 96,409,374,237 Effective search space: 215571360793932 Effective search space used: 215571360793932 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.19 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
7 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |