| Contig-U15903-1 |
| Contig ID |
Contig-U15903-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
3107 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
3912191 |
| End point |
3915283 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
7 |
| Number of EST |
13 |
| Link to clone list |
U15903 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 2.27 |
| Homology vs DNA |
Query= Contig-U15903-1 (Contig-U15903-1Q) /CSM_Contig/Contig-U15903-1Q.Seq.d
(3117 letters)
Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ430251) Dictyostelium discoideum cDNA clone:ddv6h17, 3' e... 1253 0.0 3
(BJ379050) Dictyostelium discoideum cDNA clone:ddc33j15, 3' ... 1207 0.0 2
(BJ422952) Dictyostelium discoideum cDNA clone:ddv47g15, 5' ... 1158 0.0 1
(BJ409693) Dictyostelium discoideum cDNA clone:dds42n20, 3' ... 995 0.0 2
(BJ441707) Dictyostelium discoideum cDNA clone:ddv47g15, 3' ... 1080 0.0 2
(BJ408710) Dictyostelium discoideum cDNA clone:dds46o13, 3' ... 1065 0.0 1
(BJ411997) Dictyostelium discoideum cDNA clone:ddv6h17, 5' e... 1009 0.0 1
(BJ364958) Dictyostelium discoideum cDNA clone:ddc33j15, 5' ... 985 0.0 1
(AU268626) Dictyostelium discoideum vegetative cDNA clone:VS... 948 0.0 1
(BJ400136) Dictyostelium discoideum cDNA clone:dds8n19, 3' e... 936 0.0 1
(AU268627) Dictyostelium discoideum vegetative cDNA clone:VS... 890 0.0 1
(C92045) Dictyostelium discoideum slug cDNA, clone SSC113. 468 e-127 1
(AU071622) Dictyostelium discoideum slug cDNA, clone SSC113. 84 1e-36 3
(AB039843) Plasmodium falciparum PFTRN gene for transportin,... 58 0.002 2
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 58 0.002 1
(AU086730) Plasmodium falciparum 3D7 cDNA clone from Sugano ... 58 0.002 1
(BU495163) PfESToab85b05.y1 Plasmodium falciparum 3D7 asexua... 58 0.002 1
(FD777376) NADH-aaa02b12.g1 Rhodnius_prolixus_EST_NADH_T.cru... 58 0.002 1
(FD777043) NADH-aaa02b12.b1 Rhodnius_prolixus_EST_NADH_T.cru... 58 0.002 1
(AC160498) Bos taurus clone CH240-82J14, WORKING DRAFT SEQUE... 52 0.13 1
(AC218315) Bos taurus clone CH240-287I6, WORKING DRAFT SEQUE... 52 0.13 1
(ER976314) MUGQ_CH252P297G15Sp6_CP470_058 CHORI-252 Vervet M... 52 0.13 1
(BC084944) Xenopus laevis hypothetical LOC495494, mRNA (cDNA... 40 0.23 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.26 17
(BH509949) BOGYR15TF BOGY Brassica oleracea genomic clone BO... 44 0.36 2
(EU435893) Sepsis punctum voucher su57 cytochrome oxidase su... 38 0.38 2
(BH485321) BOGTY12TF BOGT Brassica oleracea genomic clone BO... 44 0.38 2
(AY164603) Tomoplagia argentiniensis isolate K117 cytochrome... 38 0.38 2
(AY164602) Tomoplagia bicolor isolate K90 cytochrome oxidase... 38 0.38 2
(AY164601) Tomoplagia bicolor isolate K91 cytochrome oxidase... 38 0.38 2
(AY164600) Tomoplagia bicolor isolate K62 cytochrome oxidase... 38 0.38 2
(AY164595) Tomoplagia incompleta isolate K121 cytochrome oxi... 38 0.38 2
(AY164594) Tomoplagia incompleta isolate K105 cytochrome oxi... 38 0.38 2
(AY164592) Tomoplagia incompleta isolate K70 cytochrome oxid... 38 0.38 2
(AQ497854) HS_5081_A1_F12_T7A RPCI-11 Human Male BAC Library... 50 0.51 1
(EC819578) SME00003152 esmbsro2 Sawyeria marylandensis cDNA,... 34 0.63 4
(FG071329) UI-FF-IF0-aak-c-07-0-UI.r1 Ceratitis capitata emb... 42 1.1 2
(DB584942) Halocynthia roretzi cDNA clone:ma321j11, 5' end. 42 1.2 2
(FG078492) UI-FF-IF0-abu-d-06-0-UI.r1 Ceratitis capitata emb... 42 1.2 2
(AY805316) Ceratitis podocarpi isolate 1129 cytochrome oxida... 38 1.4 2
(EU055332) Macrodiplax balteata isolate od013 cytochrome oxi... 36 1.4 2
(CU571160) Zebrafish DNA sequence from clone CH73-160J1 in l... 48 2.0 1
(AL627261) Zebrafish DNA sequence from clone RP71-1N11 in li... 48 2.0 1
(CT030190) Mouse DNA sequence from clone RP23-115D20 on chro... 48 2.0 1
(AP003154) Mus musculus genomic DN, chromosome 16 clone:RP21... 48 2.0 1
(AC022740) Homo sapiens chromosome 15, clone RP11-617D22, co... 48 2.0 1
(AC098004) Rattus norvegicus clone CH230-104E16, WORKING DRA... 48 2.0 1
(AC016297) Homo sapiens clone RP11-82L14, WORKING DRAFT SEQU... 48 2.0 1
(AL743313) Danio rerio genomic clone DKEY-12H22, genomic sur... 48 2.0 1
(ED445804) AUAC-aag52h04.g1 Ascaris suum whole genome shotgu... 48 2.0 1
(DY934026) CHPX12414.b1_L07.ab1 CHP(XYZ) plains sunflower He... 48 2.0 1
(BI312132) EST5313882 GESD Medicago truncatula cDNA clone pG... 48 2.0 1
(CT758644) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.8 2
(AM458357) Vitis vinifera contig VV78X120913.3, whole genome... 40 3.1 3
(AC179286) Strongylocentrotus purpuratus clone R3-45I11, WOR... 36 3.8 2
(AC178758) Strongylocentrotus purpuratus clone R3-3002D23, W... 36 3.9 2
(AC174513) Strongylocentrotus purpuratus clone R3-1110N4, WO... 36 3.9 2
(U00065) Caenorhabditis elegans cosmid D1044, complete seque... 32 4.2 2
(BH693431) BOMIH93TF BO_2_3_KB Brassica oleracea genomic clo... 40 4.8 2
(FH347991) CHO_OF4650xp02r1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 5.2 2
(M95149) Drosophila narragansett cytochrome oxidase II (COII... 34 5.2 2
(M95144) Drosophila algonquin cytochrome oxidase II (COII) g... 34 5.2 2
(EF216252) Drosophila helvetica voucher YNU00006 cytochrome ... 34 5.2 2
(EU435859) Dicranosepsis distincta voucher su18 cytochrome o... 34 5.2 2
(EU435856) Dicranosepsis cf. parva RM-2008 voucher su15 cyto... 34 5.2 2
(AY164591) Tomoplagia sp. VNS-1 isolate K66 cytochrome oxida... 34 5.2 2
(AY164590) Tomoplagia sp. VNS-1 isolate K57 cytochrome oxida... 34 5.2 2
(AQ971848) RPCI-23-312K19.TJ RPCI-23 Mus musculus genomic cl... 38 6.3 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 6.4 16
(CR847858) Zebrafish DNA sequence from clone DKEY-78H3 in li... 46 8.0 1
(CR812469) Zebrafish DNA sequence from clone DKEY-286F3 in l... 46 8.0 1
(CR293523) Zebrafish DNA sequence from clone DKEY-104J7 in l... 46 8.0 1
(BV587047) G591P632218RG8.T0 Clint Pan troglodytes verus STS... 46 8.0 1
(AL929165) Mouse DNA sequence from clone RP23-446D4 on chrom... 46 8.0 1
(AC158399) Mus musculus BAC clone RP23-246A2 from chromosome... 46 8.0 1
(L77570) Homo sapiens DiGeorge syndrome critical region, cen... 46 8.0 1
(AC004461) Homo sapiens Chromosome 22q11.2 Cosmid Clone 119f... 46 8.0 1
(AC002522) Homo sapiens Chromosome 22 Cosmid Clone 46a9 In D... 46 8.0 1
(AC140796) Mus musculus clone RP23-326L6, WORKING DRAFT SEQU... 46 8.0 1
(AC129838) Pan troglodytes clone rp43-75h20, WORKING DRAFT S... 46 8.0 1
(AC128559) Rattus norvegicus clone CH230-298O6, *** SEQUENCI... 46 8.0 1
(AC109558) Rattus norvegicus clone CH230-325D11, WORKING DRA... 46 8.0 1
(AC099356) Rattus norvegicus clone CH230-29G7, WORKING DRAFT... 46 8.0 1
(CU695049) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 8.0 1
(CU694914) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 8.0 1
(CU694744) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 8.0 1
(CU468166) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 8.0 1
(AC225481) Medicago truncatula clone mth2-24d11, WORKING DRA... 46 8.0 1
(AC225480) Medicago truncatula clone mth2-24c6, WORKING DRAF... 46 8.0 1
(AC215193) Zea mays chromosome 9 clone CH201-182B5; ZMMBBc01... 46 8.0 1
(AC211183) Zea mays chromosome 9 clone CH201-323F15; ZMMBBc0... 46 8.0 1
(AC201216) Strongylocentrotus purpuratus clone R3-15E5, WORK... 46 8.0 1
(AC175876) Strongylocentrotus purpuratus clone R3-15E06, WOR... 46 8.0 1
(AC173553) Strongylocentrotus purpuratus clone R3-10O23, WOR... 46 8.0 1
(AC171529) Bos taurus clone CH240-310L22, WORKING DRAFT SEQU... 46 8.0 1
(AC166718) Bos taurus clone CH240-185M20, WORKING DRAFT SEQU... 46 8.0 1
(FH072046) CHO_OF3674xk08f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 8.0 1
(EJ282296) 1095366063289 Global-Ocean-Sampling_GS-27-01-01-1... 46 8.0 1
(CT232469) Sus scrofa genomic clone CH242-278E21, genomic su... 46 8.0 1
(AG905380) Oryza sativa Indica Group genomic DNA, BAC end se... 46 8.0 1
(CE565655) tigr-gss-dog-17000312710923 Dog Library Canis lup... 46 8.0 1
(BZ260517) CH230-383N22.TV CHORI-230 Segment 2 Rattus norveg... 46 8.0 1
(CX430051) JGI_XZG61371.fwd NIH_XGC_tropGas7 Xenopus (Silura... 46 8.0 1
(CX425590) JGI_XZG12461.fwd NIH_XGC_tropGas7 Xenopus (Silura... 46 8.0 1
(CX334118) JGI_XZT69711.fwd NIH_XGC_tropTad5 Xenopus (Silura... 46 8.0 1
(BM941534) UI-M-CG0p-bgg-b-01-0-UI.r1 NIH_BMAP_Ret4_S2 Mus m... 46 8.0 1
(EY877361) CL06-C4-501-063-C08-CT.F Rangpur lime root, plant... 46 8.0 1
(EX247457) PY04078X1B08.f1 PY04 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX239442) PY03020X1A07.f1 PY03 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX235718) PY01122X1H03.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX235205) PY01136X1H08.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX234878) PY01136X1D11.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX234235) PY01112X1D11.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX233872) PY01107X1F02.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX233612) PY01100X1F08.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX232890) PY01090X1E07.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX232768) PY01083X1C02.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX232767) PY01083X1C01.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX232508) PY01077X1F05.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX232471) PY01064X1B07.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX232464) PY01059X1A07.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX232218) PY01070X1E06.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX232100) PY01061X1H02.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX231809) PY01080X1B12.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX231580) PY01079X1C10.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX231547) PY01070X1F10.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX231481) PY01083X1F09.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX231334) PY01072X1C08.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX231285) PY01065X1A07.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX231261) PY01086X1G09.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX230888) PY01017X1A02.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX230731) PY01019X1E10.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX230404) PY01054X1B05.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX230161) PY01021X1D06.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX230045) PY01018X1B03.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX229720) PY01019X1A02.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX229575) PY01058X1A06.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX229265) PY01050X1D08.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX229081) PY01017X1B12.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX228501) PY01010X1D05.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX228434) PY01007X1H07.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX228249) PY01003X1A11.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(EX227985) PY01007X1G04.f1 PY01 Carica papaya cDNA, mRNA seq... 46 8.0 1
(DX017872) KBrB010H17F KBrB, Brassica rapa BamHI BAC library... 34 8.7 3
(DN561039) 87645931 Sea Urchin primary mesenchyme cell cDNA ... 34 9.2 3
>(BJ430251) Dictyostelium discoideum cDNA clone:ddv6h17, 3' end,
single read.
Length = 761
Score = 1253 bits (632), Expect(3) = 0.0
Identities = 635/636 (99%)
Strand = Plus / Minus
Query: 2223 tcttcgtggctccgatgttttacaatcaagttttgcacttcttggtgatatgagtaaatt 2282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcttcgtggctccgatgttttacaatcaagttttgcacttcttggtgatatgagtaaatt 627
Query: 2283 ctgtctcattcatttcaaacaatacataccagactatttaaatatcctcacaaacaatct 2342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctgtctcattcatttcaaacaatacataccagactatttaaatatcctcacaaacaatct 567
Query: 2343 atatccagagtatttatcggtttgtaataatgcaagttgggcaatcggtgaaattgccat 2402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atatccagagtatttatcggtttgtaataatgcaagttgggcaatcggtgaaattgccat 507
Query: 2403 tagaatgcctgatgaagttaaaccattcgtggttgcaattcgtgaccgtttaatttcaaa 2462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tagaatgcctgatgaagttaaaccattcgtggttgcaattcgtgaccgtttaatttcaaa 447
Query: 2463 catcaataaagtcaatttaaatcgtggtgtacttgaaaataccgctgtaaccattggtcg 2522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catcaataaagtcaatttaaatcgtggtgtacttgaaaataccgctgtaaccattggtcg 387
Query: 2523 tttgggtatcgtttcacctgctgatatctctccatttgtcgacaagtttattcaatgttg 2582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttgggtatcgtttcacctgctgatatctctccatttgtcgacaagtttattcaatgttg 327
Query: 2583 gtgtatggccattcgtagaaaaactgatgatattgaaaaggattcagcttttcgtggtat 2642
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtgtatggccatccgtagaaaaactgatgatattgaaaaggattcagcttttcgtggtat 267
Query: 2643 gtggttaatcattaacaataatccaaatggtgctttacgtcatttagtttacatttgtga 2702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtggttaatcattaacaataatccaaatggtgctttacgtcatttagtttacatttgtga 207
Query: 2703 cgctgttgcctcttgggataaaatgcaacctgatctctatgaagcttactttaaactttt 2762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cgctgttgcctcttgggataaaatgcaacctgatctctatgaagcttactttaaactttt 147
Query: 2763 acatatgtataaaactagtatgggtggtgtttgggctcaattctataatcaatttccaga 2822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 acatatgtataaaactagtatgggtggtgtttgggctcaattctataatcaatttccaga 87
Query: 2823 acaacttcgtgaaattttaaatgagaaatttaaatt 2858
||||||||||||||||||||||||||||||||||||
Sbjct: 86 acaacttcgtgaaattttaaatgagaaatttaaatt 51
Score = 151 bits (76), Expect(3) = 0.0
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 2147 cgaaggtattggtacatcgatcgaatcactcattccaaatagtaatttacctcatctcct 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 cgaaggtattggtacatcgatcgaatcactcattccaaatagtaatttacctcatctcct 702
Query: 2207 cttacaatgtatgaat 2222
||||||||||||||||
Sbjct: 701 cttacaatgtatgaat 686
Score = 38.2 bits (19), Expect(3) = 0.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2860 aatcaagatatatctcaat 2878
|||||||||||||||||||
Sbjct: 50 aatcaagatatatctcaat 32
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 3,189,575,100
Number of extensions: 191509713
Number of successful extensions: 15130140
Number of sequences better than 10.0: 145
Length of query: 3117
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 3092
Effective length of database: 96,311,147,814
Effective search space: 297794069040888
Effective search space used: 297794069040888
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 7.19 |
| Homology vs Protein |
Query= Contig-U15903-1 (Contig-U15903-1Q) /CSM_Contig/Contig-U15903-1Q.Seq.d
(3117 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q55CQ7) RecName: Full=Transportin; AltName: Full=Importin subun... 602 0.0
BC080218_1(BC080218|pid:none) Danio rerio transportin 2 (importi... 456 0.0
U72395_1(U72395|pid:none) Homo sapiens MIP mRNA, complete cds. 454 0.0
AB384365_1(AB384365|pid:none) Synthetic construct DNA, clone: pF... 446 0.0
BC072420_1(BC072420|pid:none) Homo sapiens transportin 2, mRNA (... 446 0.0
BC084978_1(BC084978|pid:none) Xenopus laevis hypothetical LOC495... 443 0.0
AK154985_1(AK154985|pid:none) Mus musculus NOD-derived CD11c +ve... 446 0.0
AF007748_1(AF007748|pid:none) Homo sapiens karyopherin beta2b ho... 437 0.0
AK299485_1(AK299485|pid:none) Homo sapiens cDNA FLJ54538 complet... 432 e-180
(Q8BFY9) RecName: Full=Transportin-1; AltName: Full=Importin bet... 457 e-180
(Q92973) RecName: Full=Transportin-1; AltName: Full=Importin bet... 457 e-180
AK029953_1(AK029953|pid:none) Mus musculus adult male testis cDN... 457 e-180
BC103374_1(BC103374|pid:none) Bos taurus transportin 1, mRNA (cD... 457 e-180
U70322_1(U70322|pid:none) Human transportin (TRN) mRNA, complete... 456 e-180
AK155760_1(AK155760|pid:none) Mus musculus B6-derived CD11 +ve d... 438 e-180
AE014296_1163(AE014296|pid:none) Drosophila melanogaster chromos... 437 e-179
BC084944_1(BC084944|pid:none) Xenopus laevis hypothetical LOC495... 453 e-178
BT003191_1(BT003191|pid:none) Drosophila melanogaster RE59670 fu... 437 e-178
AF059613_1(AF059613|pid:none) Drosophila melanogaster transporti... 429 e-176
AK301021_1(AK301021|pid:none) Homo sapiens cDNA FLJ58732 complet... 429 e-171
AK167049_1(AK167049|pid:none) Mus musculus blastocyst blastocyst... 457 e-160
AP008210_2372(AP008210|pid:none) Oryza sativa (japonica cultivar... 419 e-156
AL606656_5(AL606656|pid:none) Oryza sativa genomic DNA, chromoso... 405 e-152
BT062810_1(BT062810|pid:none) Zea mays full-length cDNA clone ZM... 415 e-151
BC018314_1(BC018314|pid:none) Homo sapiens transportin 2, mRNA (... 446 e-150
AY118705_1(AY118705|pid:none) Drosophila melanogaster AT21921 fu... 390 e-148
AE014296_1166(AE014296|pid:none) Drosophila melanogaster chromos... 391 e-147
AC005167_13(AC005167|pid:none) Arabidopsis thaliana chromosome 2... 409 e-143
T23948(T23948) hypothetical protein R06A4.4a - Caenorhabditis el... 362 e-136
BC031571_1(BC031571|pid:none) Mus musculus transportin 1, mRNA (... 302 e-134
AY094781_1(AY094781|pid:none) Drosophila melanogaster LD12333 fu... 309 e-133
AK029774_1(AK029774|pid:none) Mus musculus adult male testis cDN... 291 e-131
FN318261_1(FN318261|pid:none) Schistosoma japonicum isolate Anhu... 422 e-127
(O14089) RecName: Full=Importin subunit beta-2; AltName: Full=Ka... 351 e-126
CP001331_232(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 305 e-111
FN314103_1(FN314103|pid:none) Schistosoma japonicum isolate Anhu... 236 e-108
CR954214_206(CR954214|pid:none) Ostreococcus tauri strain OTTH05... 289 e-106
AE017345_111(AE017345|pid:none) Cryptococcus neoformans var. neo... 247 e-100
CR382132_72(CR382132|pid:none) Yarrowia lipolytica strain CLIB12... 283 2e-98
AK162219_1(AK162219|pid:none) Mus musculus in vitro fertilized e... 193 5e-98
CU640366_368(CU640366|pid:none) Podospora anserina genomic DNA c... 228 5e-81
BC112762_1(BC112762|pid:none) Bos taurus transportin 2, mRNA (cD... 282 5e-81
DQ335585_1(DQ335585|pid:none) Emericella nidulans KapC (kapC) ge... 236 7e-77
AM269991_41(AM269991|pid:none) Aspergillus niger contig An01c045... 243 2e-75
AM920431_1458(AM920431|pid:none) Penicillium chrysogenum Wiscons... 236 4e-74
AB172521_1(AB172521|pid:none) Macaca fascicularis brain cDNA clo... 204 9e-71
PDBN(1QBK)B MOL_ID: 1;MOL_ID: 1; MOLECULE: KARYOPHERIN BETA2; MO... 268 1e-69
FM201303_1(FM201303|pid:none) Colletotrichum higginsianum kap1 g... 192 6e-67
AY740029_1(AY740029|pid:none) Saccharomyces kudriavzevii IFO 180... 209 2e-65
CR382123_183(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 211 1e-59
AM425954_1(AM425954|pid:none) Vitis vinifera contig VV78X232329.... 213 2e-57
AY118523_1(AY118523|pid:none) Drosophila melanogaster LD19058 fu... 192 2e-55
(P38217) RecName: Full=Importin subunit beta-2; AltName: Full=Ka... 182 8e-54
CR380955_184(CR380955|pid:none) Candida glabrata strain CBS138 c... 178 2e-52
AB170336_1(AB170336|pid:none) Macaca fascicularis brain cDNA clo... 201 1e-49
AM910993_216(AM910993|pid:none) Plasmodium knowlesi strain H chr... 189 7e-46
AM470887_1(AM470887|pid:none) Vitis vinifera contig VV78X145148.... 130 4e-38
CR940353_189(CR940353|pid:none) Theileria annulata strain Ankara... 158 1e-36
AK163279_1(AK163279|pid:none) Mus musculus 2 cells egg cDNA, RIK... 138 1e-30
AM494971_228(AM494971|pid:none) Leishmania braziliensis chromoso... 125 1e-26
CP000081_230(CP000081|pid:none) Leishmania major chromosome 35, ... 118 2e-24
AM502253_241(AM502253|pid:none) Leishmania infantum chromosome 35. 117 3e-24
CP001327_234(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 98 2e-18
CR548612_343(CR548612|pid:none) Paramecium tetraurelia macronucl... 89 1e-15
AK229808_1(AK229808|pid:none) Arabidopsis thaliana mRNA for hypo... 74 3e-11
CR382130_499(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 70 6e-10
AM502254_108(AM502254|pid:none) Leishmania infantum chromosome 36. 68 2e-09
AM494972_289(AM494972|pid:none) Leishmania braziliensis chromoso... 67 4e-09
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin... 62 1e-07
(P52296) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 62 1e-07
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 62 2e-07
DQ072162_1(DQ072162|pid:none) Aplysia californica importin beta ... 60 4e-07
(O18388) RecName: Full=Importin subunit beta; AltName: Full=Kary... 60 6e-07
AE016820_22(AE016820|pid:none) Ashbya gossypii (= Eremothecium g... 59 8e-07
FN392320_144(FN392320|pid:none) Pichia pastoris GS115 chromosome... 59 1e-06
AM502252_51(AM502252|pid:none) Leishmania infantum chromosome 34. 58 2e-06
CU928175_49(CU928175|pid:none) Zygosaccharomyces rouxii strain C... 58 2e-06
CR382132_607(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 57 3e-06
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 57 5e-06
AK299145_1(AK299145|pid:none) Homo sapiens cDNA FLJ50625 complet... 57 5e-06
AK316421_1(AK316421|pid:none) Homo sapiens cDNA, FLJ79320 comple... 57 5e-06
AM494957_47(AM494957|pid:none) Leishmania braziliensis chromosom... 56 7e-06
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl... 56 7e-06
DQ984942_3(DQ984942|pid:none) Medicago truncatula Ser/Thr protei... 56 9e-06
CR380953_40(CR380953|pid:none) Candida glabrata strain CBS138 ch... 55 1e-05
CR954202_531(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 55 1e-05
CR940347_1084(CR940347|pid:none) Theileria annulata strain Ankar... 54 3e-05
AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo... 52 1e-04
CR382122_234(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 52 1e-04
AK100005_1(AK100005|pid:none) Oryza sativa Japonica Group cDNA c... 52 2e-04
AB170846_1(AB170846|pid:none) Macaca fascicularis brain cDNA clo... 51 2e-04
(O60518) RecName: Full=Ran-binding protein 6; Short=Ran... 50 5e-04
PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C... 50 5e-04
AC135206_1(AC135206|pid:none) Oryza sativa (japonica cultivar-gr... 50 7e-04
CR382131_506(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 49 0.001
AE016816_19(AE016816|pid:none) Ashbya gossypii (= Eremothecium g... 49 0.001
AM437344_1(AM437344|pid:none) Vitis vinifera contig VV78X175554.... 48 0.002
CP000582_69(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ... 47 0.003
FN357382_14(FN357382|pid:none) Schistosoma mansoni genome sequen... 46 0.010
BC078095_1(BC078095|pid:none) Xenopus laevis MMS19-like (MET18 h... 46 0.010
CR382136_177(CR382136|pid:none) Debaryomyces hansenii strain CBS... 45 0.013
AL844507_143(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 45 0.021
BT062799_1(BT062799|pid:none) Zea mays full-length cDNA clone ZM... 45 0.021
CU928171_741(CU928171|pid:none) Kluyveromyces thermotolerans str... 44 0.028
CR380950_158(CR380950|pid:none) Candida glabrata strain CBS138 c... 43 0.062
AL035602_13(AL035602|pid:none) Arabidopsis thaliana DNA chromoso... 43 0.082
AK230070_1(AK230070|pid:none) Arabidopsis thaliana mRNA for hypo... 43 0.082
FM992688_205(FM992688|pid:none) Candida dubliniensis CD36 chromo... 42 0.11
FN392319_725(FN392319|pid:none) Pichia pastoris GS115 chromosome... 42 0.11
CP000882_160(CP000882|pid:none) Hemiselmis andersenii chromosome... 42 0.14
CU928180_139(CU928180|pid:none) Kluyveromyces thermotolerans str... 41 0.24
AY057540_1(AY057540|pid:none) Arabidopsis thaliana At1g27210/T7N... 41 0.24
EU441615_1(EU441615|pid:none) Xenopus borealis clone Tnpo2.a tra... 41 0.24
CP001032_3451(CP001032|pid:none) Opitutus terrae PB90-1, complet... 41 0.24
GN107994_1(GN107994|pid:none) Sequence 12775 from Patent WO20090... 41 0.31
AE017345_339(AE017345|pid:none) Cryptococcus neoformans var. neo... 40 0.40
AY035044_1(AY035044|pid:none) Arabidopsis thaliana unknown prote... 40 0.40
AM920428_489(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 40 0.53
(Q9H583) RecName: Full=HEAT repeat-containing protein 1; AltName... 40 0.69
AL359921_10(AL359921|pid:none) Human DNA sequence from clone RP1... 40 0.69
CP000500_677(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 39 0.90
AE014297_1581(AE014297|pid:none) Drosophila melanogaster chromos... 39 0.90
(O14134) RecName: Full=mRNA export factor elf1; &CU329670_856(C... 39 0.90
AL606589_6(AL606589|pid:none) Oryza sativa genomic DNA, chromoso... 39 0.90
AB012141_1(AB012141|pid:none) Candida glabrata TEF3 gene for tra... 39 0.90
CR855116_8(CR855116|pid:none) Oryza sativa genomic DNA, chromoso... 39 0.90
(O93796) RecName: Full=Elongation factor 3; Short=EF-3;... 39 0.90
AY070711_1(AY070711|pid:none) Drosophila melanogaster SD04925 fu... 39 0.90
CU633895_623(CU633895|pid:none) Podospora anserina genomic DNA c... 39 1.2
BC133190_1(BC133190|pid:none) Xenopus laevis hypothetical protei... 39 1.2
AK125663_1(AK125663|pid:none) Homo sapiens cDNA FLJ43675 fis, cl... 39 1.2
DVBYE3(S59395;A35027;S11174;A38376) translation elongation facto... 39 1.5
AP008212_848(AP008212|pid:none) Oryza sativa (japonica cultivar-... 39 1.5
CU928169_265(CU928169|pid:none) Kluyveromyces thermotolerans str... 39 1.5
(Q75EV6) RecName: Full=Elongation factor 3; Short=EF-3;... 38 2.0
CU928180_499(CU928180|pid:none) Kluyveromyces thermotolerans str... 38 2.0
AL355490_21(AL355490|pid:none) Human DNA sequence from clone RP1... 38 2.6
(Q96RK5) RecName: Full=MMS19 nucleotide excision repair protein ... 38 2.6
BC002692_1(BC002692|pid:none) Homo sapiens MMS19 nucleotide exci... 38 2.6
BC080532_1(BC080532|pid:none) Homo sapiens MMS19 nucleotide exci... 38 2.6
BC007298_1(BC007298|pid:none) Homo sapiens MMS19 nucleotide exci... 38 2.6
AK098212_1(AK098212|pid:none) Homo sapiens cDNA FLJ40893 fis, cl... 38 2.6
AK027710_1(AK027710|pid:none) Homo sapiens cDNA FLJ14804 fis, cl... 38 2.6
BC006575_1(BC006575|pid:none) Homo sapiens MMS19 nucleotide exci... 38 2.6
AK304129_1(AK304129|pid:none) Homo sapiens cDNA FLJ53502 complet... 38 2.6
AF319947_1(AF319947|pid:none) Homo sapiens MMS19 (MMS19) mRNA, c... 38 2.6
CQ834524_1(CQ834524|pid:none) Sequence 395 from Patent WO2004058... 38 2.6
BC117129_1(BC117129|pid:none) Homo sapiens MMS19 nucleotide exci... 38 2.6
BC009396_1(BC009396|pid:none) Homo sapiens MMS19 nucleotide exci... 38 2.6
(Q54EW3) RecName: Full=Probable importin-5 homolog; AltName: Ful... 38 2.6
AK304287_1(AK304287|pid:none) Homo sapiens cDNA FLJ54519 complet... 38 2.6
BC150614_1(BC150614|pid:none) Homo sapiens HEAT repeat containin... 38 2.6
CQ834526_1(CQ834526|pid:none) Sequence 397 from Patent WO2004058... 38 2.6
DQ890022_733(DQ890022|pid:none) Paramecium bursaria Chlorella vi... 38 2.6
AK056244_1(AK056244|pid:none) Homo sapiens cDNA FLJ31682 fis, cl... 38 2.6
BC065205_1(BC065205|pid:none) Homo sapiens HEAT repeat containin... 38 2.6
(P16521) RecName: Full=Elongation factor 3A; Short=EF-3... 38 2.6
CP000254_3041(CP000254|pid:none) Methanospirillum hungatei JF-1,... 37 3.4
AM502236_82(AM502236|pid:none) Leishmania infantum chromosome 18. 37 3.4
AX067150_1(AX067150|pid:none) Sequence 2 from Patent WO0100669. ... 37 3.4
DQ491001_742(DQ491001|pid:none) Paramecium bursaria chlorella vi... 37 3.4
(O42900) RecName: Full=Serine/threonine-protein kinase ppk19; ... 37 4.5
AE017342_245(AE017342|pid:none) Cryptococcus neoformans var. neo... 37 4.5
FM992689_981(FM992689|pid:none) Candida dubliniensis CD36 chromo... 37 4.5
CP000393_710(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 37 4.5
BC168513_1(BC168513|pid:none) Danio rerio cDNA clone IMAGE:69620... 37 4.5
AM910992_83(AM910992|pid:none) Plasmodium knowlesi strain H chro... 37 4.5
CP000500_129(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 37 4.5
AE017344_232(AE017344|pid:none) Cryptococcus neoformans var. neo... 37 4.5
AC160095_19(AC160095|pid:none) Solanum lycopersicum clone BB, co... 37 4.5
CU633454_76(CU633454|pid:none) Podospora anserina genomic DNA ch... 37 5.8
CR858699_1(CR858699|pid:none) Pongo abelii mRNA; cDNA DKFZp459N1... 37 5.8
EU972074_1(EU972074|pid:none) Zea mays clone 374472 armadillo/be... 37 5.8
(Q9LUS9) RecName: Full=Putative F-box/LRR-repeat protein At3g165... 37 5.8
(P33892) RecName: Full=Translational activator GCN1; &A48126(A4... 37 5.8
BC025035_1(BC025035|pid:none) Mus musculus expressed sequence AI... 37 5.8
(Q5R6J0) RecName: Full=Proteasome-associated protein ECM29 homol... 37 5.8
CR860499_1(CR860499|pid:none) Pongo abelii mRNA; cDNA DKFZp469F1... 37 5.8
(Q6PDI5) RecName: Full=Proteasome-associated protein ECM29 homol... 37 5.8
AC117176_70(AC117176|pid:none) Dictyostelium discoideum chromoso... 37 5.9
FM992692_78(FM992692|pid:none) Candida dubliniensis CD36 chromos... 36 7.6
BC135787_1(BC135787|pid:none) Xenopus tropicalis GCN1 general co... 36 7.6
AM910996_421(AM910996|pid:none) Plasmodium knowlesi strain H chr... 36 7.6
EU878265_1(EU878265|pid:none) Helicoverpa armigera trehalose 6-p... 36 7.6
AC006193_10(AC006193|pid:none) Arabidopsis thaliana chromosome I... 36 7.6
CP000554_440(CP000554|pid:none) Prochlorococcus marinus str. MIT... 36 7.6
AE014297_123(AE014297|pid:none) Drosophila melanogaster chromoso... 36 7.6
AE017352_276(AE017352|pid:none) Cryptococcus neoformans var. neo... 36 7.6
AY528738_1(AY528738|pid:none) Trypanosoma cruzi chromosome-assoc... 36 10.0
BC172431_1(BC172431|pid:none) Synthetic construct Homo sapiens c... 36 10.0
(Q5VYK3) RecName: Full=Proteasome-associated protein ECM29 homol... 36 10.0
AL954693_2(AL954693|pid:none) Zebrafish DNA sequence from clone ... 36 10.0
AK132192_1(AK132192|pid:none) Mus musculus 10 days embryo whole ... 36 10.0
AB002366_1(AB002366|pid:none) Human mRNA for KIAA0368 gene, part... 36 10.0
BC021127_1(BC021127|pid:none) Homo sapiens KIAA0368, mRNA (cDNA ... 36 10.0
BC172632_1(BC172632|pid:none) Synthetic construct Mus musculus c... 36 10.0
AL159168_1(AL159168|pid:none) Human DNA sequence from clone RP11... 36 10.0
>(Q55CQ7) RecName: Full=Transportin; AltName: Full=Importin subunit
beta; AltName: Full=Karyopherin subunit beta;
Length = 931
Score = 602 bits (1553), Expect(2) = 0.0
Identities = 305/310 (98%), Positives = 305/310 (98%)
Frame = +3
Query: 1293 AWTIRKSSAFAIDVLSGIFPDAEYLSVTLPLIEQRMNEQNPWPVRESAILALGAIADGSK 1472
AWTIRKSSAFAIDVLSGIFPDAEYLSVTLPLIEQRMNEQNPWPVRESAILALGAIADGSK
Sbjct: 404 AWTIRKSSAFAIDVLSGIFPDAEYLSVTLPLIEQRMNEQNPWPVRESAILALGAIADGSK 463
Query: 1473 NGLAPHLSKVIPYLINTLNDPKPLVRSITCWTLSRYSYWIAQADGRDYLHPLVVNLLNRI 1652
NGLAPHLSKVIPYLINTLNDPKPLVRSITCWTLSRYSYWIAQADGRDYLHPLVVNLLNRI
Sbjct: 464 NGLAPHLSKVIPYLINTLNDPKPLVRSITCWTLSRYSYWIAQADGRDYLHPLVVNLLNRI 523
Query: 1653 VDNNKKVQEAACSAFATLEEEADLLLIPYLQMILVTFVNAFGKYQAKNLLILYDAISTLA 1832
VDNNKKVQEAACSAFATLEEEADLLLIPYLQMILVTFVNAFGKYQAKNLLILYDAISTLA
Sbjct: 524 VDNNKKVQEAACSAFATLEEEADLLLIPYLQMILVTFVNAFGKYQAKNLLILYDAISTLA 583
Query: 1833 KVVGNELNKPELINILVPPLLQKFNALDDSNKNLLPLLGCLNQVCSSIGAGLQNLISLFF 2012
KVVGNELNKPELINILVPPLLQKFNALDDSNKNLLPLLGCLNQVCSSIGAGLQNLISLFF
Sbjct: 584 KVVGNELNKPELINILVPPLLQKFNALDDSNKNLLPLLGCLNQVCSSIGAGLQNLISLFF 643
Query: 2013 NRSIKLIEGSLQAHYKYNNQDQKGXXXXXDQDFIVAALDLLQGLSEGIGTSIESLIPNSN 2192
NRSIKLIEGSLQAHYKYNNQDQKG DQDFIVAALDLLQGLSEGIGTSIESLIPNSN
Sbjct: 644 NRSIKLIEGSLQAHYKYNNQDQKGSSSSSDQDFIVAALDLLQGLSEGIGTSIESLIPNSN 703
Query: 2193 LPHLLLQCMN 2222
LPHLLLQCMN
Sbjct: 704 LPHLLLQCMN 713
Score = 449 bits (1155), Expect(2) = 0.0
Identities = 218/218 (100%), Positives = 218/218 (100%)
Frame = +1
Query: 2224 LRGSDVLQSSFALLGDMSKFCLIHFKQYIPDYLNILTNNLYPEYLSVCNNASWAIGEIAI 2403
LRGSDVLQSSFALLGDMSKFCLIHFKQYIPDYLNILTNNLYPEYLSVCNNASWAIGEIAI
Sbjct: 714 LRGSDVLQSSFALLGDMSKFCLIHFKQYIPDYLNILTNNLYPEYLSVCNNASWAIGEIAI 773
Query: 2404 RMPDEVKPFVVAIRDRLISNINKVNLNRGVLENTAVTIGRLGIVSPADISPFVDKFIQCW 2583
RMPDEVKPFVVAIRDRLISNINKVNLNRGVLENTAVTIGRLGIVSPADISPFVDKFIQCW
Sbjct: 774 RMPDEVKPFVVAIRDRLISNINKVNLNRGVLENTAVTIGRLGIVSPADISPFVDKFIQCW 833
Query: 2584 CMAIRRKTDDIEKDSAFRGMWLIINNNPNGALRHLVYICDAVASWDKMQPDLYEAYFKLL 2763
CMAIRRKTDDIEKDSAFRGMWLIINNNPNGALRHLVYICDAVASWDKMQPDLYEAYFKLL
Sbjct: 834 CMAIRRKTDDIEKDSAFRGMWLIINNNPNGALRHLVYICDAVASWDKMQPDLYEAYFKLL 893
Query: 2764 HMYKTSMGGVWAQFYNQFPEQLREILNEKFKLNQDISQ 2877
HMYKTSMGGVWAQFYNQFPEQLREILNEKFKLNQDISQ
Sbjct: 894 HMYKTSMGGVWAQFYNQFPEQLREILNEKFKLNQDISQ 931
Score = 467 bits (1202), Expect(2) = e-166
Identities = 238/255 (93%), Positives = 238/255 (93%)
Frame = +3
Query: 426 LKTNIKQYFEKMPREVQNYIKREILPVLSDPDASVRHTVGNIITNLIKKSCFSEWPELLP 605
LKTNIKQYFEKMPREVQNYIKREILPVLSDPDASVRHTVGNIITNLIKKSCFSEWPELLP
Sbjct: 70 LKTNIKQYFEKMPREVQNYIKREILPVLSDPDASVRHTVGNIITNLIKKSCFSEWPELLP 129
Query: 606 ALNLALDSNSQDLIEGSLYTLSLLCEDSTKKLDSDDSGRALNQLIPKLIMFFKCNNADFR 785
ALNLALDSNSQDLIEGSLYTLSLLCEDSTKKLDSDDSGRALNQLIPKLIMFFKCNNADFR
Sbjct: 130 ALNLALDSNSQDLIEGSLYTLSLLCEDSTKKLDSDDSGRALNQLIPKLIMFFKCNNADFR 189
Query: 786 KKALVSISYFIISMPGALLINMEAFLKGIFSMSEDPSEAVRTNVCKTLVTLVETKIEFLL 965
KKALVSISYFIISMPGALLINMEAFLKGIFSMSEDPSEAVRTNVCKTLVTLVETKIEFLL
Sbjct: 190 KKALVSISYFIISMPGALLINMEAFLKGIFSMSEDPSEAVRTNVCKTLVTLVETKIEFLL 249
Query: 966 PYIKDVIQYMLHATKDKSEXVALEACEFWTAISQAEGCRXXXXXXXXXXXXXXXNGMVXT 1145
PYIKDVIQYMLHATKDKSE VALEACEFWTAISQAEGCR NGMV T
Sbjct: 250 PYIKDVIQYMLHATKDKSEEVALEACEFWTAISQAEGCRDLLRDYLPVLVPILLNGMVYT 309
Query: 1146 EQDYEYLDQGDDSMT 1190
EQDYEYLDQGDDSMT
Sbjct: 310 EQDYEYLDQGDDSMT 324
Score = 144 bits (364), Expect(2) = e-166
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +2
Query: 218 MSEWVPNQDGLKQLVYVLNLSNSTSREVHDQIREELDKFHSVPDYNNYLTLIFKSNELQP 397
MSEWVPNQDGLKQLVYVLNLSNSTSREVHDQIREELDKFHSVPDYNNYLTLIFKSNELQP
Sbjct: 1 MSEWVPNQDGLKQLVYVLNLSNSTSREVHDQIREELDKFHSVPDYNNYLTLIFKSNELQP 60
Query: 398 HIRSVAGLVFK 430
HIRSVAGLV K
Sbjct: 61 HIRSVAGLVLK 71
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 4,314,861,521
Number of extensions: 83758138
Number of successful extensions: 210612
Number of sequences better than 10.0: 197
Number of HSP's gapped: 210230
Number of HSP's successfully gapped: 374
Length of query: 1039
Length of database: 1,051,180,864
Length adjustment: 139
Effective length of query: 900
Effective length of database: 601,299,163
Effective search space: 541169246700
Effective search space used: 541169246700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
1 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
1 |
| SF (FL, S) |
1 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |