>Contig-U15886-1 (Contig-U15886-1Q) /CSM_Contig/Contig-U15886-1Q.Seq.d
ATCTCATTTTTTTTATAAATAAATTCTTATATATATAAAAAAATGTCAGA
AGAAACATCAACTCAAATCTTAAAACAAGTTGAATATTATTTTAGTGATT
CAAATTTCCCAAGAGATAAATTTTTAAGATCTGAAGCTGCTAAAAATGTT
GACAATTATATTTCAATTGATGTTATTGCATCATTCAATAGAATGAAAAC
AATTTCAACAGATTTACAATTAATTACAGAAGCATTAAAGAAATCAACAA
GATTACAAGTTAGTGAAGATGGTAAAATGGTTAGAAGATTAGATCCATTA
CCAGAGAATATTGATTGTGGTAAAACATTATATAGCAAAGGTTGGCCAGA
GGATACAACCATTGAAAAAGTTCAAGAGTTTTTCAATGCAAATGGTGGTT
ATAAGGGTAGTTTCAGTTAGATTAAGAAAGAAGTCCGATAAATCATTCAA
AGGATCATTTTTAGCCCGATTTCGAAACTGAAGAGATTGTAAATAAAATT
ATTACTGAAGCACCAAAACTCGGTGAAAAGGAATTGATTTATCAAACTTT
TAAACAATTCTCAGATGAAAAGAAAGACGAAAAAGAGAAGTTCTTTGCAT
CAACAAATGGCGATAAAAAGAGAAAAGCTAAGAAAGAAGCAGACAGAGAA
AATGGTGATGATGATGACAACGATGGTGATAATAAAGATGTAAAAAAAGA
AGTAGAAGAAGAGGAAGTAATGATTCCAGGTGTTATCTTATGTTTCAAAG
GTGTTGGTAAAGGTTTACACAGAGGTGATATCAAAGAGATCTTCTCACAA
TATGGTGAGGTTCAATTCGTTGGTTATAACAGTGACGAAGAGAATGGTTC
AGTTCGTTATAAAACCGCTGAATCTTGCAAACGTGCCATAGCAATCACTC
ACTGAAACTAAAAAAGAAATCGGTGGCCAAATCCCAACTTACAATCTCCT
CGAAGGTGAAGAGGAGAAGAAAGAGTGGGAAAAAATCATTGAAAGAAAAA
AGAATGCCGCCAAAAATGGTGGTTTCAAAAAAGGTGGTTTCAAGAAAGGT
GGTTTCAAGAAAGGTGGTTTCAAAAAAGGTGGTAATTTTAAAAAAGTTAA
AAAGGAATAAATTAATTTATTAAAAAAAAAACTAAAAAAAAAACTAAAAA
AAAAAAACTAAAAATATCATAAAAAAAAAAAATAATAAAAAAAAAACTAT
TTTAAAATTAAAAAAA----------GTTAAAAGGAAAAAAAAAAGTGGG
NAAAAANCCTTTAAAAAAAAAAAAAANCCCCCCAAAAAGGNGGNTTNNAA
AAANGNGGNTTNNAAAAANGTGGNTTNNAAAAANGNGGNTTCNAAAAANG
TGGNNATTTTTAAAAAGTT

est1=CHD562F,1,604
est2=VFA319F,1,588
est3=CHB790F,6,396
est4=CHB842F,6,483
est5=CHE311F,15,604
est6=CHE512F,15,575
est7=VFJ692F,15,624
est8=VFN771F,17,628
est9=VFF286F,21,573
est10=VSG465F,21,436
est11=VFB854F,25,627
est12=SSB718F,38,315
est13=VSI627E,40,906
est14=VSF840F,48,584
est15=VFB327F,96,404
est16=VSF737F,229,404
est17=SSF167Z,509,1178
est18=VSE112Z,575,1140
est19=VSE643Z,586,1139
est20=VSF840Z,605,1136
est21=FCL-AD23Z,630,1214
est22=SSB718Z,700,1215
est23=VSC772Z,864,1140
est24=CHB842Z,1217,1359

shffyk*iliyikkcqkkhqlks*nklniilviqisqeinf*dlkllkmltiifqlmllh
hsie*kqfqqiyn*lqkh*rnqqdyklvkmvkwled*ihyqrilivvkhyiakvgqriqp
lkkfksfsmqmvvirvvsvrlrkksdksfkgsflarfrn*rdck*nyy*stktr*kgidl
snf*tilr*kerrkrevlcinkwr*keks*ersrqrkw****qrw***rckkrsrrrgsn
dsrcylmfqrcw*rftqr*yqrdlltiw*gsirwl*q*rrewfssl*nr*ilqtchsnhs
lklkkksvaksqltisskvkrrrksgkkslkekrmppkmvvskkvvsrkvvsrkvvskkv
vilkklkrnkliy*kkn*kkn*KKKTKNIIKKKNNKKKTILKLKK---

---VKRKKKSGXKXFKKKKXPPKKXXXKXXXXKXVXXKXXXSKXVXIFKK

Frame A:
isffl*insyiykkmseetstqilkqveyyfsdsnfprdkflrseaaknvdnyisidvia
sfnrmktistdlqlitealkkstrlqvsedgkmvrrldplpenidcgktlyskgwpedtt
iekvqeffnanggykgsfs*ikkevr*iiqriifspisklkrl*iklllkhqnsvkrn*f
ikllnnsqmkrktkkrsslhqqmaikreklrkkqtekmvmmmttmviikm*kkk*kkrk*
*fqvlsyvskvlvkvyteviskrsshnmvrfnslvitvtkrmvqfvikplnlanvp*qsl
tetkkeiggqiptynllegeeekkewekiierkknaaknggfkkggfkkggfkkggfkkg
gnfkkvkke*inllkkklkkklkkkn*kyhkkkk**kknyfkikk---

---VKRKKKSGXKXFKKKKXPPKKXXXKXXXXKXVXXKXXXSKXVXIFKK

Frame B:
shffyk*iliyikkcqkkhqlks*nklniilviqisqeinf*dlkllkmltiifqlmllh
hsie*kqfqqiyn*lqkh*rnqqdyklvkmvkwled*ihyqrilivvkhyiakvgqriqp
lkkfksfsmqmvvirvvsvrlrkksdksfkgsflarfrn*rdck*nyy*stktr*kgidl
snf*tilr*kerrkrevlcinkwr*keks*ersrqrkw****qrw***rckkrsrrrgsn
dsrcylmfqrcw*rftqr*yqrdlltiw*gsirwl*q*rrewfssl*nr*ilqtchsnhs
lklkkksvaksqltisskvkrrrksgkkslkekrmppkmvvskkvvsrkvvsrkvvskkv
vilkklkrnkliy*kkn*kkn*KKKTKNIIKKKNNKKKTILKLKK---

---lkgkkkvgkxplkkkkxppkrxxxkxxxxkxwxxkxxxxkxwxflks

Frame C:
liffinkflyi*knvrrninsnlkts*ilf**fkfpkr*ifki*sc*kc*qlyfn*cyci
iq*nennfnrftinyrsikeinkits**rw*ng*kirsitrey*lw*nii*qrlargynh
*kssrvfqckwwl*g*fqld*erspinhskdhf*pdfeteeivnkiiteapklgekeliy
qtfkqfsdekkdekekffastngdkkrkakkeadrengddddndgdnkdvkkeveeeevm
ipgvilcfkgvgkglhrgdikeifsqygevqfvgynsdeengsvryktaesckraiaith
*n*krnrwpnpnlqsprr*rgeervgknh*kkkecrqkwwfqkrwfqerwfqerwfqkrw
*f*ks*kgin*fikkktkkktkkkklkis*kkkiikkklf*n*k---

---*kekkkwxkxl*kkkkxpqkggxxkxgxxkxgxxkxgfxkxgxf*kv

Query= Contig-U15886-1 (Contig-U15886-1Q)
/CSM_Contig/Contig-U15886-1Q.Seq.d
         (1369 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15886-1 (Contig-U15886-1Q) /CSM_Contig/Conti...  1786  0.0
Contig-U13470-1 (Contig-U13470-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U10984-1 (Contig-U10984-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U02236-1 (Contig-U02236-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U11901-1 (Contig-U11901-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U15821-1 (Contig-U15821-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U12361-1 (Contig-U12361-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11908-1 (Contig-U11908-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11674-1 (Contig-U11674-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti...    36  0.14

>Contig-U15886-1 (Contig-U15886-1Q) /CSM_Contig/Contig-U15886-1Q.Seq.d
          Length = 1369

 Score = 1786 bits (901), Expect = 0.0
 Identities = 929/943 (98%)
 Strand = Plus / Plus

                                                                       
Query: 15  ataaataaattcttatatatatnnnnnnntgtcagaagaaacatcaactcaaatcttaaa 74
           ||||||||||||||||||||||       |||||||||||||||||||||||||||||||
Sbjct: 15  ataaataaattcttatatatataaaaaaatgtcagaagaaacatcaactcaaatcttaaa 74

                                                                       
Query: 75  acaagttgaatattattttagtgattcaaatttcccaagagataaatttttaagatctga 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  acaagttgaatattattttagtgattcaaatttcccaagagataaatttttaagatctga 134

                                                                       
Query: 135 agctgctaaaaatgttgacaattatatttcaattgatgttattgcatcattcaatagaat 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agctgctaaaaatgttgacaattatatttcaattgatgttattgcatcattcaatagaat 194

                                                                       
Query: 195 gaaaacaatttcaacagatttacaattaattacagaagcattaaagaaatcaacaagatt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaaaacaatttcaacagatttacaattaattacagaagcattaaagaaatcaacaagatt 254

                                                                       
Query: 255 acaagttagtgaagatggtaaaatggttagaagattagatccattaccagagaatattga 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acaagttagtgaagatggtaaaatggttagaagattagatccattaccagagaatattga 314

                                                                       
Query: 315 ttgtggtaaaacattatatagcaaaggttggccagaggatacaaccattgaaaaagttca 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttgtggtaaaacattatatagcaaaggttggccagaggatacaaccattgaaaaagttca 374

                                                                       
Query: 375 agagtttttcaatgcaaatggtggttataagggtagtttcagttagattaagaaagaagt 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agagtttttcaatgcaaatggtggttataagggtagtttcagttagattaagaaagaagt 434

                                                                       
Query: 435 ccgataaatcattcaaaggatcatttttagcccgatttcgaaactgaagagattgtaaat 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccgataaatcattcaaaggatcatttttagcccgatttcgaaactgaagagattgtaaat 494

                                                                       
Query: 495 aaaattattactgaagcaccaaaactcggtgaaaaggaattgatttatcaaacttttaaa 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaaattattactgaagcaccaaaactcggtgaaaaggaattgatttatcaaacttttaaa 554

                                                                       
Query: 555 caattctcagatgaaaagaaagacgaaaaagagaagttctttgcatcaacaaatggcgat 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caattctcagatgaaaagaaagacgaaaaagagaagttctttgcatcaacaaatggcgat 614

                                                                       
Query: 615 aaaaagagaaaagctaagaaagaagcagacagagaaaatggtgatgatgatgacaacgat 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaaaagagaaaagctaagaaagaagcagacagagaaaatggtgatgatgatgacaacgat 674

                                                                       
Query: 675 ggtgataataaagatgtnnnnnnngaagtagaagaagaggaagtaatgattccaggtgtt 734
           |||||||||||||||||       ||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggtgataataaagatgtaaaaaaagaagtagaagaagaggaagtaatgattccaggtgtt 734

                                                                       
Query: 735 atcttatgtttcaaaggtgttggtaaaggtttacacagaggtgatatcaaagagatcttc 794
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 atcttatgtttcaaaggtgttggtaaaggtttacacagaggtgatatcaaagagatcttc 794

                                                                       
Query: 795 tcacaatatggtgaggttcaattcgttggttataacagtgacgaagagaatggttcagtt 854
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tcacaatatggtgaggttcaattcgttggttataacagtgacgaagagaatggttcagtt 854

                                                                       
Query: 855 cgttataaaaccgctgaatcttgcaaacgtgccatagcaatcactcactgaaactaaaaa 914
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cgttataaaaccgctgaatcttgcaaacgtgccatagcaatcactcactgaaactaaaaa 914

                                                      
Query: 915 agaaatcggtggccaaatcccaacttacaatctcctcgaaggt 957
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agaaatcggtggccaaatcccaacttacaatctcctcgaaggt 957


 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1278 ccccccaaaaaggnggnttnnaaaaangnggnttnnaaaaangtggnttnnaaaaangng 1337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 ccccccaaaaaggnggnttnnaaaaangnggnttnnaaaaangtggnttnnaaaaangng 1337

                                            
Query: 1338 gnttcnaaaaangtggnnatttttaaaaagtt 1369
            ||||||||||||||||||||||||||||||||
Sbjct: 1338 gnttcnaaaaangtggnnatttttaaaaagtt 1369


>Contig-U13470-1 (Contig-U13470-1Q) /CSM_Contig/Contig-U13470-1Q.Seq.d
          Length = 216

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                        
Query: 1278 ccccccaaaaaggnggnttnnaaaaangnggnttnnaaaaangtggnttnnaaaaangng 1337
            |||||||||| |||||||| |||||||| ||||| |||||||| ||||| |||||||| |
Sbjct: 56   ccccccaaaanggnggnttcnaaaaangtggnttcnaaaaangnggnttcnaaaaanggg 115

                                            
Query: 1338 gnttcnaaaaangtggnnatttttaaaaagtt 1369
            ||||||||||||||||| ||||| ||||||||
Sbjct: 116  gnttcnaaaaangtggnaattttnaaaaagtt 147


>Contig-U10984-1 (Contig-U10984-1Q) /CSM_Contig/Contig-U10984-1Q.Seq.d
          Length = 2671

 Score = 40.1 bits (20), Expect = 0.009
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  aaatcttaaaacaagttgaa 84
           ||||||||||||||||||||
Sbjct: 340 aaatcttaaaacaagttgaa 359


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,756
Number of Sequences: 8402
Number of extensions: 23756
Number of successful extensions: 2658
Number of sequences better than 10.0: 358
length of query: 1369
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1353
effective length of database: 7,941,110
effective search space: 10744321830
effective search space used: 10744321830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U15886-1 (Contig-U15886-1Q) /CSM_Contig/Contig-U15886-1Q.Seq.d
         (1369 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268984) Dictyostelium discoideum vegetative cDNA clone:VS...   932   0.0    3
(BJ417759) Dictyostelium discoideum cDNA clone:ddv28n17, 5' ...   720   0.0    4
(BJ414917) Dictyostelium discoideum cDNA clone:ddv20g24, 5' ...   720   0.0    4
(BJ411490) Dictyostelium discoideum cDNA clone:ddv4l14, 5' e...   720   0.0    3
(BJ364122) Dictyostelium discoideum cDNA clone:ddc30f03, 5' ...   720   0.0    4
(BJ364032) Dictyostelium discoideum cDNA clone:ddc29k15, 5' ...   720   0.0    4
(AU268985) Dictyostelium discoideum vegetative cDNA clone:VS...   448   0.0    5
(BJ410574) Dictyostelium discoideum cDNA clone:ddv1f05, 5' e...   714   0.0    4
(BJ364263) Dictyostelium discoideum cDNA clone:ddc31g03, 5' ...   712   0.0    4
(AU265875) Dictyostelium discoideum vegetative cDNA clone:VS...   712   0.0    3
(BJ410272) Dictyostelium discoideum cDNA clone:ddv11k22, 5' ...   720   0.0    3
(BJ363137) Dictyostelium discoideum cDNA clone:ddc25d12, 5' ...   720   0.0    4
(C84737) Dictyostelium discoideum slug cDNA, clone SSF167.        383   0.0    3
(AU266523) Dictyostelium discoideum vegetative cDNA clone:VS...   720   0.0    3
(BJ363252) Dictyostelium discoideum cDNA clone:ddc25d23, 5' ...   700   0.0    2
(AU262877) Dictyostelium discoideum vegetative cDNA clone:VS...   383   0.0    3
(AU263262) Dictyostelium discoideum vegetative cDNA clone:VS...   383   0.0    3
(AU265876) Dictyostelium discoideum vegetative cDNA clone:VS...   321   e-172  4
(BJ411176) Dictyostelium discoideum cDNA clone:ddv3f07, 5' e...   295   e-155  3
(AU037286) Dictyostelium discoideum slug cDNA, clone SSB718.      381   e-127  2
(AU071522) Dictyostelium discoideum slug cDNA, clone SSB718.      464   e-126  1
(AU265706) Dictyostelium discoideum vegetative cDNA clone:VS...   311   4e-80  1
(AU262782) Dictyostelium discoideum vegetative cDNA clone:VS...   117   7e-35  2
(AC142126) Rattus norvegicus clone CH230-220K22, WORKING DRA...    56   0.004  1
(DN882174) naf05h04.y1 Rabbit eye cornea. Unnormalized (naf)...    56   0.004  1
(DN881987) naf04e08.y1 Rabbit eye cornea. Unnormalized (naf)...    56   0.004  1
(AM910985) Plasmodium knowlesi strain H chromosome 3, comple...    40   0.12   2
(AC168814) Strongylocentrotus purpuratus clone R3-13G18, WOR...    40   0.13   2
(AC180779) Strongylocentrotus purpuratus clone R3-3076A23, W...    40   0.13   2
(AC119847) Mus musculus chromosome 3, clone RP23-46L5, compl...    50   0.22   1
(CR382136) Debaryomyces hansenii strain CBS767 chromosome A ...    50   0.22   1
(AX647699) Sequence 1891 from Patent EP1270724.                    50   0.22   1
(AL162457) Human DNA sequence from clone RP11-429E11 on chro...    50   0.22   1
(AC177750) Strongylocentrotus purpuratus clone R3-1008A8, WO...    50   0.22   1
(EG603086) EMBRYOF101106I19 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    50   0.22   1
(EV204009) 0171087 Brassica napus Leaf - drought Brassica na...    50   0.22   1
(AC111890) Rattus norvegicus clone CH230-50J3, *** SEQUENCIN...    36   0.46   2
(AC111889) Rattus norvegicus clone CH230-50F1, *** SEQUENCIN...    36   0.47   2
(AC135201) Rattus norvegicus clone CH230-145L13, *** SEQUENC...    36   0.48   2
(AC178941) Strongylocentrotus purpuratus clone R3-3121B7, WO...    34   0.49   2
(AC180360) Strongylocentrotus purpuratus clone R3-3114K8, WO...    34   0.49   2
(BW840915) Branchiostoma floridae cDNA, neurula clone:bfne01...    34   0.64   2
(AC027463) Homo sapiens clone RP11-45K15, WORKING DRAFT SEQU...    48   0.80   2
(AC080067) Homo sapiens chromosome 2 clone RP11-2O23, WORKIN...    48   0.81   5
(AC184545) Strongylocentrotus purpuratus clone R3-3C2, WORKI...    40   0.83   5
(AL929565) Mouse DNA sequence from clone RP23-454N16 on chro...    48   0.88   1
(AC164638) Mus musculus BAC clone RP23-198N12 from chromosom...    48   0.88   1
(AC157546) Mus musculus chromosome 19, clone RP23-325I11, co...    48   0.88   1
(AC202619) Rhesus Macaque  BAC CH250-389L24 () complete sequ...    48   0.88   1
(EA737896) Sequence 9342 from patent US 7368527.                   48   0.88   1
(DL005662) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     48   0.88   1
(CS459587) Sequence 68 from Patent WO2006117596.                   48   0.88   1
(CQ528272) Sequence 60139 from Patent WO0160860.                   48   0.88   1
(Z98747) Human DNA sequence from clone RP1-37J18 on chromoso...    48   0.88   1
(AP004550) Homo sapiens genomic DNA, chromosome 11q, clone:C...    48   0.88   1
(AL163952) Human chromosome 14 DNA sequence BAC R-1012E15 of...    48   0.88   1
(AL133387) Human DNA sequence from clone RP11-107I14 on chro...    48   0.88   1
(AC210757) Homo sapiens FOSMID clone ABC12-46924400E3 from c...    48   0.88   1
(AC210440) Homo sapiens FOSMID clone ABC9-46008300C11 from c...    48   0.88   1
(AC073021) Homo sapiens 3 BAC RP11-250B16 (Roswell Park Canc...    48   0.88   1
(AC007390) Homo sapiens BAC clone RP11-423P10 from 2, comple...    48   0.88   1
(AC006143) Homo sapiens PAC clone RP1-74M20 from X, complete...    48   0.88   1
(AC122101) Rattus norvegicus clone CH230-506G16, *** SEQUENC...    48   0.88   1
(AC120697) Rattus norvegicus clone CH230-82D10, *** SEQUENCI...    48   0.88   1
(AC097688) Rattus norvegicus clone CH230-145A9, WORKING DRAF...    48   0.88   1
(AC068983) Homo sapiens chromosome 3 clone RP11-236B20, WORK...    48   0.88   1
(AC064798) Homo sapiens chromosome 1 clone RP11-182C20 map 1...    48   0.88   1
(AC055750) Homo sapiens chromosome 3 clone RP11-467B6, WORKI...    48   0.88   1
(AL445304) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.88   1
(AL355299) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.88   1
(AC181767) Strongylocentrotus purpuratus clone R3-1035E16, W...    48   0.88   1
(AC180958) Strongylocentrotus purpuratus clone R3-3061H01, W...    48   0.88   1
(AC022658) Homo sapiens clone RP11-29G17, WORKING DRAFT SEQU...    48   0.88   1
(AZ206392) SP_0108_A1_B04_T7A Strongylocentrotus purpuratus,...    48   0.88   1
(AZ186025) SP_1006_A2_A06_SP6 Strongylocentrotus purpuratus,...    48   0.88   1
(BZ271672) CH230-316M22.TJ CHORI-230 Segment 2 Rattus norveg...    48   0.88   1
(AL710560) Homo sapiens mRNA; EST DKFZp686M156_r1  (from clo...    48   0.88   1
(AL710544) Homo sapiens mRNA; EST DKFZp686L146_r1  (from clo...    48   0.88   1
(BG982047) MR3-CN0147-120201-011-b01 CN0147 Homo sapiens cDN...    48   0.88   1
(EY330345) CAWY3409.rev CAWY Helobdella robusta Subtracted E...    48   0.88   1
(EY317520) CAWX27619.rev CAWX Helobdella robusta Primary Ear...    48   0.88   1
(EY292650) CAWX10675.rev CAWX Helobdella robusta Primary Ear...    48   0.88   1
(AC199456) Macaca mulatta clone CH250-117D21, WORKING DRAFT ...    44   1.5    5
(AC142440) Rattus norvegicus clone CH230-522I17, WORKING DRA...    36   1.8    2
(AC078991) Homo sapiens Xp BAC RP11-459A10 (Roswell Park Can...    34   1.8    2
(AC177052) Strongylocentrotus purpuratus clone R3-4004B23, W...    32   1.8    2
(AU284917) Dictyostelium discoideum gamete cDNA clone:FC-BP2...    32   1.9    3
(AU284857) Dictyostelium discoideum gamete cDNA clone:FC-BN1...    32   1.9    3
(CK597048) AGENCOURT_17838249 NIH_MGC_238 Rattus norvegicus ...    36   2.3    2
(EY325318) CAWY1085.fwd CAWY Helobdella robusta Subtracted E...    34   2.4    2
(EY325317) CAWY1085.rev CAWY Helobdella robusta Subtracted E...    34   2.4    2
(EY336351) CAWY7630.rev CAWY Helobdella robusta Subtracted E...    34   2.4    2
(CP000315) Clostridium perfringens phage phiSM101, complete ...    38   2.6    4
(DE872911) Macropus eugenii DNA, BAC clone: MEB1-043H03_R, 3...    34   2.7    3
(CR550305) Zebrafish DNA sequence from clone DKEY-205E15 in ...    46   3.5    1
(BV671873) S217P61440FB11.T0 Noemie Pan troglodytes troglody...    46   3.5    1
(AB136126) Homo sapiens DNA, STS on chromosome 2, D2S0131i, ...    46   3.5    1
(AL732468) Mouse DNA sequence from clone RP23-149P17 on chro...    46   3.5    1
(AC119911) Mus musculus chromosome 1, clone RP24-242P4, comp...    46   3.5    1
(AC117837) Mus musculus BAC clone RP24-196P11 from 10, compl...    46   3.5    1
(AC117673) Mus musculus chromosome 1, clone RP23-390I1, comp...    46   3.5    1
(AC112793) Mus musculus BAC clone RP23-410D16 from chromosom...    46   3.5    1
(AC102452) Mus musculus chromosome 5, clone RP24-272L20, com...    46   3.5    1
(AC022368) Mus musculus strain C57BL6/J clone RP23-192D21, c...    46   3.5    1
(DJ450027) Method for analysing genome using microsatellite ...    46   3.5    1
(AL034557) Plasmodium falciparum MAL4P1.                           46   3.5    1
(AC120053) Homo sapiens chromosome 8, clone CTD-2006H14, com...    46   3.5    1
(AC114769) Homo sapiens BAC clone RP11-405K16 from 2, comple...    46   3.5    1
(AC068136) Homo sapiens BAC clone RP11-777J1 from 2, complet...    46   3.5    1
(AC133342) Rattus norvegicus clone CH230-411L2, WORKING DRAF...    46   3.5    1
(AC126562) Rattus norvegicus clone CH230-76K23, *** SEQUENCI...    46   3.5    1
(AC122606) Rattus norvegicus clone CH230-11H7, *** SEQUENCIN...    46   3.5    1
(AC111579) Rattus norvegicus clone CH230-72K4, *** SEQUENCIN...    46   3.5    1
(AC096602) Rattus norvegicus clone CH230-92I16, *** SEQUENCI...    46   3.5    1
(CU914514) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.5    1
(CU856460) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.5    1
(AC094336) Rattus norvegicus clone CH230-3J11, *** SEQUENCIN...    46   3.5    1
(AL844509) Plasmodium falciparum chromosome 13.                    46   3.5    1
(AL844506) Plasmodium falciparum chromosome  7.                    46   3.5    1
(AF172274) Homo sapiens chromosome 8 clone CTA-390C11 map 8q...    46   3.5    1
(AC226490) Monodelphis domestica clone VMRC6-45F22, WORKING ...    46   3.5    1
(AC181627) Strongylocentrotus purpuratus clone R3-1105J13, W...    46   3.5    1
(AC175887) Strongylocentrotus purpuratus clone R3-15B18, WOR...    46   3.5    1
(AC166970) Mus musculus chromosome 1 clone RP23-333K20 map 1...    46   3.5    1
(AB224770) Aspergillus oryzae cDNA, contig sequence: AoEST1620.    46   3.5    1
(BH356938) CH230-95A7.TV CHORI-230 Segment 1 Rattus norvegic...    46   3.5    1
(AZ336616) 1M0067B02F Mouse 10kb plasmid UUGC1M library Mus ...    46   3.5    1
(ER317547) 1092344154134 Global-Ocean-Sampling_GS-34-01-01-1...    46   3.5    1
(CW933479) EDCCJ09TF A. castellanii, 6-8 kb library from tot...    46   3.5    1
(EH727639) CNMM14080.b1_O16.ab1 CNM(LMS) spotted knapweed Ce...    46   3.5    1
(EB924680) 10784942 ZF31 Danio rerio cDNA clone 3264162, mRN...    46   3.5    1
(DY289102) IC0AAA71BH07RM1 CitNFL Citrus clementina cDNA 5',...    46   3.5    1
(DY276523) IC0AAA41BF01RM1 CitNFL Citrus clementina cDNA 5',...    46   3.5    1
(DY271740) IC0AAA2AH09RM1 CitNFL Citrus clementina cDNA 5', ...    46   3.5    1
(DV614286) EST1217282 Glossina morsitans morsitans Fat body ...    46   3.5    1
(CO150705) EST825758 Aspergillus flavus Normalized cDNA Expr...    46   3.5    1
(CO142231) EST836902 Aspergillus flavus Normalized cDNA Expr...    46   3.5    1
(CO134297) EST828968 Aspergillus flavus Normalized cDNA Expr...    46   3.5    1
(CF835917) UCRCS03_02B22_r Washington Navel Orange Shoot Mer...    46   3.5    1
(BG097568) EST462087 potato leaves and petioles Solanum tube...    46   3.5    1
(FG373609) CBHF7488.fwd CBHF Trichoderma virens strain Gv29-...    46   3.5    1
(FG373608) CBHF7488.rev CBHF Trichoderma virens strain Gv29-...    46   3.5    1
(EY431594) ZY080470 Aspergillus oryzae EST Library Aspergill...    46   3.5    1
(EY369872) CAXA12596.rev CAXA Helobdella robusta Subtracted ...    46   3.5    1
(EY239746) CATY1757.fwd CATY Aspergillus niger fungal filame...    46   3.5    1
(EY239745) CATY1757.rev CATY Aspergillus niger fungal filame...    46   3.5    1
(EY229877) CATW5229.rev CATW Aspergillus niger Pelleted fung...    46   3.5    1
(BA000039) Thermosynechococcus elongatus BP-1 DNA, complete ...    46   3.5    1
(AG489342) Mus musculus molossinus DNA, clone:MSMg01-386F16....    38   3.6    2
(EY377052) CAXA16509.fwd CAXA Helobdella robusta Subtracted ...    44   3.9    2
(EY369441) CAXA12364.fwd CAXA Helobdella robusta Subtracted ...    44   4.1    2
(BF681456) 602155679F1 NIH_MGC_83 Homo sapiens cDNA clone IM...    40   4.3    2
(EY371690) CAXA13587.fwd CAXA Helobdella robusta Subtracted ...    44   4.3    2
(FK417398) 454GmaGlobSeed152030 Soybean Seeds Containing Glo...    42   4.6    2
(AM435040) Vitis vinifera contig VV78X198569.5, whole genome...    44   4.9    2
(AC007738) Homo sapiens BAC clone RP11-32P22 from 2, complet...    44   5.1    5
(BJ369848) Dictyostelium discoideum cDNA clone:ddc52b09, 5' ...    38   5.3    3
(AC168486) Strongylocentrotus purpuratus clone R3-3117K8, WO...    42   5.5    3
(AC134363) Rattus norvegicus clone CH230-2G11, *** SEQUENCIN...    34   6.2    2
(AC096347) Rattus norvegicus clone CH230-19C1, *** SEQUENCIN...    34   6.2    2
(AC111958) Rattus norvegicus clone CH230-130D10, *** SEQUENC...    32   6.3    2
(AC128963) Rattus norvegicus clone CH230-8P1, WORKING DRAFT ...    34   6.3    2
(AC136867) Rattus norvegicus clone CH230-385B18, *** SEQUENC...    32   6.4    2
(AC179058) Strongylocentrotus purpuratus clone R3-4005J02, W...    34   6.5    2
(AC174264) Strongylocentrotus purpuratus clone R3-3121J15, W...    32   6.5    2
(AC201368) Strongylocentrotus purpuratus clone R3-17C9, WORK...    34   6.6    2
(AC177979) Strongylocentrotus purpuratus clone R3-3051F16, W...    32   6.7    2
(AM451633) Vitis vinifera, whole genome shotgun sequence, co...    34   7.2    2
(EX851591) CBNC9104.fwd CBNC Phycomyces blakesleeanus NRRL15...    34   7.5    3
(CU638681) Pig DNA sequence from clone CH242-330I13 on chrom...    40   8.3    4
(CL125079) ISB1-86G19_T7.1 ISB1 Xenopus (Silurana) tropicali...    32   8.6    2
(EY329737) CAWY2940.fwd CAWY Helobdella robusta Subtracted E...    34   8.6    2
(EY320988) CAWX7661.fwd CAWX Helobdella robusta Primary Earl...    34   8.6    2
(EY323487) CAWX9026.fwd CAWX Helobdella robusta Primary Earl...    34   8.6    2
(EH705021) CCIS3903.b1_M15.ab1 CCI(LMS) chicory Cichorium in...    32   8.7    2
(CE562387) tigr-gss-dog-17000312685272 Dog Library Canis lup...    32   8.7    2
(DB865807) Lipochromis sp. 'matumbi hunter' cDNA clone:hm794...    34   8.8    2
(BJ674285) Paralabidochromis chilotes cDNA clone:no134d10.         34   8.8    2
(CX518513) s13dNF32H08VI076_423859 Virus-Infected Leaves Med...    34   8.8    2
(FC069475) sT7aVVM024O08018 VVM Vitis vinifera cDNA clone VV...    34   8.9    2
(BH003771) BMBAC04P11SP6_PSU Brugia malayi Genomic Bac Libra...    32   8.9    2
(BJ672294) Paralabidochromis chilotes cDNA clone:no31f10.          34   8.9    2
(FC058593) sT7aVVM_AER50A04 VVM Vitis vinifera cDNA clone VV...    34   8.9    2
(AC176350) Strongylocentrotus purpuratus clone R3-3048P24, W...    38   9.0    4
(BJ681727) Paralabidochromis chilotes cDNA clone:no31f10.          34   9.0    2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    42   9.4    8
(AC110150) Rattus norvegicus clone CH230-39D11, *** SEQUENCI...    42   9.7    5

>(AU268984) Dictyostelium discoideum vegetative cDNA clone:VSI627,
           5' end single read.
          Length = 615

 Score =  932 bits (470), Expect(3) = 0.0
 Identities = 470/470 (100%)
 Strand = Plus / Plus


Query: 51  agaaacatcaactcaaatcttaaaacaagttgaatattattttagtgattcaaatttccc 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12  agaaacatcaactcaaatcttaaaacaagttgaatattattttagtgattcaaatttccc 71


Query: 111 aagagataaatttttaagatctgaagctgctaaaaatgttgacaattatatttcaattga 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  aagagataaatttttaagatctgaagctgctaaaaatgttgacaattatatttcaattga 131


Query: 171 tgttattgcatcattcaatagaatgaaaacaatttcaacagatttacaattaattacaga 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tgttattgcatcattcaatagaatgaaaacaatttcaacagatttacaattaattacaga 191


Query: 231 agcattaaagaaatcaacaagattacaagttagtgaagatggtaaaatggttagaagatt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agcattaaagaaatcaacaagattacaagttagtgaagatggtaaaatggttagaagatt 251


Query: 291 agatccattaccagagaatattgattgtggtaaaacattatatagcaaaggttggccaga 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agatccattaccagagaatattgattgtggtaaaacattatatagcaaaggttggccaga 311


Query: 351 ggatacaaccattgaaaaagttcaagagtttttcaatgcaaatggtggttataagggtag 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggatacaaccattgaaaaagttcaagagtttttcaatgcaaatggtggttataagggtag 371


Query: 411 tttcagttagattaagaaagaagtccgataaatcattcaaaggatcatttttagcccgat 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tttcagttagattaagaaagaagtccgataaatcattcaaaggatcatttttagcccgat 431


Query: 471 ttcgaaactgaagagattgtaaataaaattattactgaagcaccaaaact 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttcgaaactgaagagattgtaaataaaattattactgaagcaccaaaact 481

 Score =  224 bits (113), Expect(3) = 0.0
 Identities = 116/117 (99%)
 Strand = Plus / Plus


Query: 520 tcggtgaaaaggaattgatttatcaaacttttaaacaattctcagatgaaaagaaagacg 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcggtgaaaaggaattgatttatcaaacttttaaacaattctcagatgaaaagaaagacg 541


Query: 580 aaaaagagaagttctttgcatcaacaaatggcgataaaaagagaaaagctaagaaag 636
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aaaaggagaagttctttgcatcaacaaatggcgataaaaagagaaaagctaagaaag 598

 Score = 34.2 bits (17), Expect(3) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 636 gaagcagacagagaaaa 652
           |||||||||||||||||
Sbjct: 599 gaagcagacagagaaaa 615

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,299,812,571
Number of extensions: 79896237
Number of successful extensions: 6781012
Number of sequences better than 10.0: 190
Length of query: 1369
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1345
Effective length of database: 96,409,374,237
Effective search space: 129670608348765
Effective search space used: 129670608348765
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U15886-1 (Contig-U15886-1Q) /CSM_Contig/Contig-U15886-1Q.Seq.d
         (1369 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ252010_1(AJ252010|pid:none) Trypanosoma brucei mRNA for La pro...   107   1e-21
AF212865_1(AF212865|pid:none) Trypanosoma brucei RNA binding pro...   107   1e-21
AM502239_44(AM502239|pid:none) Leishmania infantum chromosome 21.      96   4e-18
CR380954_345(CR380954|pid:none) Candida glabrata strain CBS138 c...    85   2e-17
FN315251_1(FN315251|pid:none) Schistosoma japonicum isolate Anhu...    93   2e-17
FN320502_1(FN320502|pid:none) Schistosoma japonicum isolate Anhu...    93   2e-17
FN315249_1(FN315249|pid:none) Schistosoma japonicum isolate Anhu...    93   2e-17
BT059453_1(BT059453|pid:none) Salmo salar clone ssal-rgf-519-082...    87   2e-15
CU928168_574(CU928168|pid:none) Kluyveromyces thermotolerans str...    84   3e-15
CU928174_307(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    85   5e-15
AB451351_1(AB451351|pid:none) Homo sapiens SSB mRNA for autoanti...    83   7e-15
AB170808_1(AB170808|pid:none) Macaca fascicularis brain cDNA clo...    83   7e-15
AK059415_1(AK059415|pid:none) Oryza sativa Japonica Group cDNA c...    85   7e-15
(P10881) RecName: Full=Lupus La protein homolog; AltName: Full=L...    81   9e-15
S03849(S03849) ribonucleoprotein La - bovine  &X13698_1(X13698|p...    81   9e-15
(P40796) RecName: Full=La protein homolog; AltName: Full=La ribo...    84   9e-15
AP007154_195(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    75   2e-14
(P87058) RecName: Full=La protein homolog; AltName: Full=La ribo...    77   2e-14
AB011371_1(AB011371|pid:none) Schizosaccharomyces pombe mRNA for...    77   2e-14
BT075687_1(BT075687|pid:none) Osmerus mordax clone omor-eva-508-...    83   3e-14
BC108782_1(BC108782|pid:none) Xenopus laevis Lupus La protein ho...    83   3e-14
BC081780_1(BC081780|pid:none) Rattus norvegicus Sjogren syndrome...    79   3e-14
AK088677_1(AK088677|pid:none) Mus musculus 2 days neonate thymus...    79   3e-14
(P38656) RecName: Full=Lupus La protein homolog; AltName: Full=L...    79   3e-14
AK168828_1(AK168828|pid:none) Mus musculus 17 days pregnant adul...    79   3e-14
EF397636_1(EF397636|pid:none) Cricetulus griseus Sjogren syndrom...    79   4e-14
CP001325_238(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    82   6e-14
(P28049) RecName: Full=Lupus La protein homolog B; AltName: Full...    81   1e-13
AK012772_1(AK012772|pid:none) Mus musculus 10, 11 days embryo wh...    80   2e-13
BC098983_1(BC098983|pid:none) Xenopus laevis La protein form A, ...    80   2e-13
BC020127_1(BC020127|pid:none) Mus musculus La ribonucleoprotein ...    80   2e-13
AK102477_1(AK102477|pid:none) Oryza sativa Japonica Group cDNA c...    80   2e-13
(Q5XI01) RecName: Full=La-related protein 7; AltName: Full=La ri...    79   4e-13
BC097252_1(BC097252|pid:none) Rattus norvegicus Sjogren syndrome...    79   4e-13
AK017822_1(AK017822|pid:none) Mus musculus 8 days embryo whole b...    79   4e-13
AJ720700_1(AJ720700|pid:none) Gallus gallus partial mRNA for hyp...    78   9e-13
AF003140_8(AF003140|pid:none) Caenorhabditis elegans cosmid C44E...    78   9e-13
BC114861_1(BC114861|pid:none) Bos taurus La ribonucleoprotein do...    78   9e-13
AM430301_2(AM430301|pid:none) Vitis vinifera contig VV78X051134....    77   1e-12
CP001574_593(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    77   1e-12
FJ362353_3(FJ362353|pid:none) Caenorhabditis brenneri contig JD0...    77   1e-12
AK100327_1(AK100327|pid:none) Oryza sativa Japonica Group cDNA c...    77   1e-12
(P33399) RecName: Full=La protein homolog; AltName: Full=La ribo...    77   2e-12
AE016819_824(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    77   2e-12
FN315086_1(FN315086|pid:none) Schistosoma japonicum isolate Anhu...    76   2e-12
BX649606_5(BX649606|pid:none) Aspergillus fumigatus BAC pilot pr...    72   3e-12
(Q4R627) RecName: Full=La-related protein 7; AltName: Full=La ri...    76   3e-12
(Q4G0J3) RecName: Full=La-related protein 7; AltName: Full=La ri...    76   3e-12
EU667388_1(EU667388|pid:none) Homo sapiens La-related protein 7 ...    76   3e-12
AK070576_1(AK070576|pid:none) Oryza sativa Japonica Group cDNA c...    75   4e-12
AC084404_15(AC084404|pid:none) Oryza sativa chromosome 3 BAC OSJ...    75   4e-12
BT036537_1(BT036537|pid:none) Zea mays full-length cDNA clone ZM...    75   7e-12
AC004005_10(AC004005|pid:none) Arabidopsis thaliana chromosome 2...    75   7e-12
EU957726_1(EU957726|pid:none) Zea mays clone 1612989 unknown mRNA.     75   7e-12
AP001080_16(AP001080|pid:none) Oryza sativa Japonica Group genom...    74   9e-12
AP008207_942(AP008207|pid:none) Oryza sativa (japonica cultivar-...    74   9e-12
AB170633_1(AB170633|pid:none) Macaca fascicularis brain cDNA clo...    74   9e-12
CR382125_49(CR382125|pid:none) Kluyveromyces lactis strain NRRL ...    74   1e-11
AF219009_1(AF219009|pid:none) Drosophila melanogaster La autoant...    74   1e-11
FN357578_1(FN357578|pid:none) Schistosoma mansoni genome sequenc...    74   1e-11
AE014298_1362(AE014298|pid:none) Drosophila melanogaster chromos...    74   1e-11
AY056237_1(AY056237|pid:none) Arabidopsis thaliana unknown prote...    72   5e-11
AY136302_1(AY136302|pid:none) Arabidopsis thaliana putative prot...    72   5e-11
EU959455_1(EU959455|pid:none) Zea mays clone 218213 RNA binding ...    72   6e-11
CR382131_772(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    72   6e-11
AE013599_1996(AE013599|pid:none) Drosophila melanogaster chromos...    71   8e-11
AP002041_2(AP002041|pid:none) Arabidopsis thaliana genomic DNA, ...    70   1e-10
(Q9BRS8) RecName: Full=La-related protein 6; AltName: Full=La ri...    70   2e-10
AE017345_253(AE017345|pid:none) Cryptococcus neoformans var. neo...    70   2e-10
CR382138_1117(CR382138|pid:none) Debaryomyces hansenii strain CB...    70   2e-10
AK020966_1(AK020966|pid:none) Mus musculus adult male corpora qu...    70   2e-10
AK017372_1(AK017372|pid:none) Mus musculus 6 days neonate head c...    70   2e-10
(Q8BN59) RecName: Full=La-related protein 6; AltName: Full=La ri...    70   2e-10
AK039614_1(AK039614|pid:none) Mus musculus adult male spinal cor...    70   2e-10
AM429928_1(AM429928|pid:none) Vitis vinifera contig VV78X202191....    68   7e-10
AF094825_1(AF094825|pid:none) Brassica napus RNA-binding protein...    68   9e-10
AM492667_1(AM492667|pid:none) Cotesia congregata partial mRNA fo...    68   9e-10
FM992688_689(FM992688|pid:none) Candida dubliniensis CD36 chromo...    67   2e-09
AK002058_1(AK002058|pid:none) Homo sapiens cDNA FLJ11196 fis, cl...    67   2e-09
CP000500_63(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso...    66   3e-09
AX885492_1(AX885492|pid:none) Sequence 1355 from Patent EP1033401.     66   3e-09
BC123089_1(BC123089|pid:none) Xenopus tropicalis acheron, mRNA (...    65   4e-09
BC160739_1(BC160739|pid:none) Xenopus laevis hypothetical protei...    65   4e-09
AF039718_5(AF039718|pid:none) Caenorhabditis elegans cosmid T12F...    65   4e-09
AF039718_4(AF039718|pid:none) Caenorhabditis elegans cosmid T12F...    65   4e-09
T16754(T16754)hypothetical protein R144.7 - Caenorhabditis elegans     65   6e-09
BC106385_1(BC106385|pid:none) Xenopus laevis hypothetical protei...    65   7e-09
BC001460_1(BC001460|pid:none) Homo sapiens La ribonucleoprotein ...    64   2e-08
(Q6PKG0) RecName: Full=La-related protein 1; AltName: Full=La ri...    64   2e-08
AK228183_1(AK228183|pid:none) Arabidopsis thaliana mRNA for RNA-...    63   3e-08
BT026473_1(BT026473|pid:none) Arabidopsis thaliana At1g79880 mRN...    63   3e-08
AC137924_9(AC137924|pid:none) Oryza sativa (japonica cultivar-gr...    62   5e-08
FN317171_1(FN317171|pid:none) Schistosoma japonicum isolate Anhu...    62   5e-08
(Q6ZQ58) RecName: Full=La-related protein 1; AltName: Full=La ri...    62   6e-08
AK138840_1(AK138840|pid:none) Mus musculus 0 day neonate thymus ...    62   6e-08
AK163348_1(AK163348|pid:none) Mus musculus 2 cells egg cDNA, RIK...    62   6e-08
AK160155_1(AK160155|pid:none) Mus musculus adult male testis cDN...    62   6e-08
CU062501_1(CU062501|pid:none) Zebrafish DNA sequence from clone ...    61   8e-08
BC110300_1(BC110300|pid:none) Homo sapiens La ribonucleoprotein ...    61   1e-07
(Q8N6F4) RecName: Full=La-related protein 2; AltName: Full=La ri...    61   1e-07
AL137759_1(AL137759|pid:none) Homo sapiens mRNA; cDNA DKFZp434K2...    61   1e-07
BC148512_1(BC148512|pid:none) Synthetic construct Homo sapiens c...    61   1e-07
AL832170_1(AL832170|pid:none) Homo sapiens mRNA; cDNA DKFZp686E0...    61   1e-07
BT077880_1(BT077880|pid:none) Lepeophtheirus salmonis Pacific fo...    60   1e-07
BC168570_1(BC168570|pid:none) Xenopus tropicalis cDNA clone MGC:...    60   2e-07
BC093491_1(BC093491|pid:none) Xenopus laevis hypothetical protei...    60   2e-07
AK092764_1(AK092764|pid:none) Homo sapiens cDNA FLJ35445 fis, cl...    59   3e-07
FN317364_1(FN317364|pid:none) Schistosoma japonicum isolate Anhu...    59   3e-07
AK074001_1(AK074001|pid:none) Oryza sativa Japonica Group cDNA c...    59   3e-07
AY810245_1(AY810245|pid:none) Schistosoma japonicum SJCHGC08042 ...    59   3e-07
BC166226_1(BC166226|pid:none) Xenopus tropicalis La ribonucleopr...    58   7e-07
(Q9VAW5) RecName: Full=La-related protein; AltName: Full=dlarp; ...    57   1e-06
BC134815_1(BC134815|pid:none) Xenopus laevis hypothetical protei...    57   1e-06
AE014297_4391(AE014297|pid:none) Drosophila melanogaster chromos...    57   1e-06
AF221108_1(AF221108|pid:none) Drosophila melanogaster La related...    57   1e-06
AE014296_650(AE014296|pid:none) Drosophila melanogaster chromoso...    57   2e-06
(Q9I7T7) RecName: Full=La-related protein CG11505; AltName: Full...    57   2e-06
CR954201_479(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    57   2e-06
AC136504_17(AC136504|pid:none) Medicago truncatula clone mth2-13...    57   2e-06
FN357327_16(FN357327|pid:none) Schistosoma mansoni genome sequen...    56   3e-06
BC098998_1(BC098998|pid:none) Xenopus laevis hypothetical protei...    56   3e-06
AC105730_12(AC105730|pid:none) Oryza sativa (japonica cultivar-g...    54   1e-05
AF412052_1(AF412052|pid:none) Arabidopsis thaliana At2g43970/F6E...    54   1e-05
AE017350_10(AE017350|pid:none) Cryptococcus neoformans var. neof...    54   1e-05
CR954218_37(CR954218|pid:none) Ostreococcus tauri strain OTTH059...    54   1e-05
M20328_1(M20328|pid:none) Human ribonucleoprotein (La) mRNA, 3' ...    50   2e-05
BC056513_1(BC056513|pid:none) Danio rerio La ribonucleoprotein d...    53   2e-05
(Q9P6K0) RecName: Full=Uncharacterized HTH La-type RNA-binding p...    53   3e-05
(Q92615) RecName: Full=La-related protein 5; AltName: Full=La ri...    52   7e-05
BC078640_1(BC078640|pid:none) Mus musculus La ribonucleoprotein ...    52   7e-05
AK042491_1(AK042491|pid:none) Mus musculus 3 days neonate thymus...    52   7e-05
D86971_1(D86971|pid:none) Homo sapiens mRNA for KIAA0217 gene, p...    52   7e-05
(Q6A0A2) RecName: Full=La-related protein 5; AltName: Full=La ri...    52   7e-05
BC059218_1(BC059218|pid:none) Mus musculus La ribonucleoprotein ...    52   7e-05
BT069075_1(BT069075|pid:none) Zea mays full-length cDNA clone ZM...    50   1e-04
EU957203_1(EU957203|pid:none) Zea mays clone 1585573 unknown mRNA.     50   1e-04
CP000581_497(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    50   2e-04
CU062501_3(CU062501|pid:none) Zebrafish DNA sequence from clone ...    50   2e-04
AF370207_1(AF370207|pid:none) Arabidopsis thaliana unknown prote...    50   2e-04
CR382123_49(CR382123|pid:none) Kluyveromyces lactis strain NRRL ...    49   3e-04
AB429254_1(AB429254|pid:none) Dicyema japonicum gene for hypothe...    49   3e-04
AM920431_629(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    49   6e-04
CP001324_637(CP001324|pid:none) Micromonas sp. RCC299 chromosome...    49   6e-04
CP000585_288(CP000585|pid:none) Ostreococcus lucimarinus CCE9901...    48   7e-04
BC124489_1(BC124489|pid:none) Danio rerio zgc:153918, mRNA (cDNA...    48   7e-04
CU638744_222(CU638744|pid:none) Podospora anserina genomic DNA c...    48   0.001
AM468901_8(AM468901|pid:none) Vitis vinifera contig VV78X107915....    47   0.001
EU964755_1(EU964755|pid:none) Zea mays clone 281380 unknown mRNA.      47   0.001
CR382122_16(CR382122|pid:none) Kluyveromyces lactis strain NRRL ...    47   0.002
CR382129_366(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    47   0.002
AM270160_19(AM270160|pid:none) Aspergillus niger contig An08c005...    46   0.004
CR954203_242(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    46   0.004
BT088048_1(BT088048|pid:none) Zea mays full-length cDNA clone ZM...    44   0.010
AP006149_19(AP006149|pid:none) Oryza sativa Japonica Group genom...    44   0.010
AY692939_1(AY692939|pid:none) Saccharomyces cerevisiae clone FLH...    44   0.014
CP000497_650(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    44   0.018
AY280524_1(AY280524|pid:none) Tetrahymena thermophila telomerase...    42   0.052
AF307939_1(AF307939|pid:none) Euplotes aediculatus telomerase su...    42   0.052
CR380948_27(CR380948|pid:none) Candida glabrata strain CBS138 ch...    42   0.052
S19365(S19365) hypothetical protein YCL037c - yeast (Saccharomyc...    42   0.068
CU928170_46(CU928170|pid:none) Kluyveromyces thermotolerans stra...    41   0.089
AE016814_370(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    41   0.089
AE016819_947(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    41   0.12
AM989980_38(AM989980|pid:none) Zygosaccharomyces rouxii strain C...    40   0.15
FN357619_9(FN357619|pid:none) Schistosoma mansoni genome sequenc...    40   0.26
FN357619_11(FN357619|pid:none) Schistosoma mansoni genome sequen...    40   0.26
FN357619_10(FN357619|pid:none) Schistosoma mansoni genome sequen...    40   0.26
CU062501_2(CU062501|pid:none) Zebrafish DNA sequence from clone ...    40   0.26
CR382137_1079(CR382137|pid:none) Debaryomyces hansenii chromosom...    39   0.34
CU633867_89(CU633867|pid:none) Podospora anserina genomic DNA ch...    39   0.44
AC146790_13(AC146790|pid:none) Medicago truncatula clone mth2-12...    38   0.98
(Q7VHV4) RecName: Full=Alanyl-tRNA synthetase;          EC=6.1.1...    37   1.7
AP008215_1264(AP008215|pid:none) Oryza sativa (japonica cultivar...    37   1.7
AC123571_17(AC123571|pid:none) Medicago truncatula clone mth1-14...    37   1.7
DQ185046_1(DQ185046|pid:none) Homo sapiens Sjogren syndrome anti...    37   2.2
AB109206_2(AB109206|pid:none) Oryza sativa Japonica Group genomi...    36   3.7
FM992694_290(FM992694|pid:none) Candida dubliniensis CD36 chromo...    35   4.9
(O13845) RecName: Full=RNA-binding protein rsd1;  &CU329670_1673...    35   6.3

>AJ252010_1(AJ252010|pid:none) Trypanosoma brucei mRNA for La
           protein.
          Length = 335

 Score =  107 bits (267), Expect = 1e-21
 Identities = 50/119 (42%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
 Frame = +1

Query: 43  MSEETSTQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQL 222
           +S E   ++ KQVE+YFSD N  RD FL+ + A+N + ++S++ + +F R+ +++TD++
Sbjct: 3   LSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKE 62

Query: 223 ITEALKKSTRLQVSEDGKMVRRLDPLPENIDCG-KTLYSKGWPEDTTIEKVQEFFNANG 396
           + EA++ S +L +SEDG MVRR DPLPE+I    +T+Y K  P   T+E++ EFF+ +G
Sbjct: 63  VVEAIRPSEKLVLSEDGLMVRRRDPLPESIQTDHQTVYVKPVPPTATLEQLTEFFSKHG 121

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,340,043,680
Number of extensions: 24382909
Number of successful extensions: 57767
Number of sequences better than 10.0: 178
Number of HSP's gapped: 57317
Number of HSP's successfully gapped: 198
Length of query: 456
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 324
Effective length of database: 623,955,076
Effective search space: 202161444624
Effective search space used: 202161444624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.46  gvh: 0.32  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.00
 nuc: 1.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U15886-1 is nuc