Contig-U15870-1
Contig ID Contig-U15870-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15870-1 (Contig-U15870-1Q) /CSM_Contig/Contig-U15870-1Q.Seq.d
ACTGTTGGCCTACTGGTATTTTTAAATCCGTTATAAAATTCAAATTTTTT
ATCGTAAAATTGGAACAGACAAAAAAAAGGATGGCAACCAAAGAAAATAA
AGCTACAACCACCACCACTACAACTAGTACCTCCACAACTAACAGTAATA
ACAACGATAGTAATACTACTTCAACAACTACAGCAGCAGCAGCAACTACA
ACAACAACAACTAAACAACCAAAAAAAGATATCTATGTTGATGTTGATTG
GAAAGAACTAACACCAATCGGTTTTGAATTTAATACATGGGAAAGTATGA
AAAAAGAAGGATGGACATTCCCAGAATTAAAGAGAGAATTTAAAAGAGGT
GTACTTTCACATGCACAAACTGATAAACCACTTTACATGTTTTTAGGTGC
TCAACCAATCGTTGAAGGTGACTATGCATTTAATATGCCATATATTGTTG
TTTTTGATTGTCCATCACCACCACCATCAAAAATTTGTAAAGCATCAATT
CAAGGTGGTAGTGAAGATATTTACAATTTCTCTGATTTCCATTTATCATG
GTCTCCATATATTCCATCAAGATATTCCAATCAAGCTTCAAATAAAAAAT
ACAAAATTTTTACATTGAACTTACAAGAACGTCCAGGTAAAAAAATCTCT
GAAGAAAAACAATTAAATATTCAATATTTACTTCCATATATTCTTATTCC
AAAAATTTTCAAAACATTTTCAGTTACACCAATTACAAATGTTCAATTCA
TATTAAAGGATTGTAAATTAACCAAAGAAGCTGGTGAAAAATTAATCAAA
GAAAGAAAACAAGAAGAAGAGGCCTACAAGAAATGGGTCGAAGAAAATAA
AGGTAAAAAGAAGGATGAAAAAACAGCAGGTCCAACCAAACCACCAACTA
AATTACCATTCAAAGTTTTGAAAGATGCTGATGGCAAAGTCACTGGTGTC
ACCAAAGATTTTGAAATCTATTTCGATAAATTATCCGATAGTATCAAAAC
ATATCCAGGTGAATTTGTTGAAGATAATGGTTTAGTTTCCATTTATCATG
GTCTCCATATATTCCATCAAGATATTCCAATCAAGCTTCAAATAAAAAAT
ACAAAATTTTTACATTGAACTTACAAGAACGTCCAGGTAAAAAAATCTCT
GAAGAAAAACAATTAAATATTCAATATTTACTTCCATATATTCTTATTCC
AAAAATTTTCAAAACATTTTCAGTTACACCAATTACAAATGTTCAATTCA
TATTAAAGGATTGTAAATTAACCAAAGAAGCTGGTGAAAAATTAATCAAA
GAAAGAAAACAAGAAGAAGAGGCCTACAAGAAATGGGTCGAAGAAAATAA
AGGTAAAAAGAAGGATGAAAAAACAGCAGGTCCAACCAAACCACCAACTA
AATTACCATTCAAAGTTTTGAAAGATGCTGATGGCAAAGTCACTGGTGTC
ACCAAAGATTTTGAAATCTATTTCGATAAATTATCCGATAGTATCAAAAC
ATATCCAGGTGAATTTGTTGAAGATAATGGTTTAGTAGAGGAGATGACTG
AAGTCATTGATAAAGCAATCAGAGATGAATTTGTTAAAGCTAGAGCTGTT
GCCCAAAAGAAATATGATGATTTGAAGGCTGAAATCGATTCTTACTCTCC
AAAGAAAGCTGAAGATTATGACAACTGTAAAATCTATAAATTCTATCCAC
GTCATAAAAAATATAATATTCAAAAATATGTTTCACCAGCAGTAAATAGA
TTCTTTGGTAATGCTACACAAACTTTCCCAGATGCTCTTAAACTCTCTTT
AACAGAATTAAAGGAAGTTGATGCTGACCTTGTTAAAAAGATTGCAGATG
AAGATAAGAAATCATGGTCTTCAGGTATTAAAAAATCAAAAGAAACTCAA
ATTGATGATGGTCGTTATTCAGACTCTGATGAATCTTCATCTGAAGATGA
AGAATCTGAAGAAGAACCAAAGAAAGAGGTTGTTAAAAGAGTTGTTAAAA
AAGCTGCTGCTAAACCAGCTCCAGTTAAACCAGCTCCAAAACAATCTAAA
AAGAAAGCTGCTGCCTAAGAAACCAAAAGCTGATGAAAAGTCTGAAGAAA
AAGCTGATGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAGAA
AAAGAAGAAGAAAAAGAAGAAGAAAAGGAAGAAGAAAAGGAAGAAAAAGA
AGAAAAGGAAACTAAAGCTGATGATAAAGAAGAAAAAGAAGAAAAAGAAG
CTAAAGCTGATGAAAAGAAAGAAAAAGCTGAAGAGAAAAAAGAAGAGAAA
AAAGAAGAAGAGAAAAAAGAAGAAGAGAAAAAAGAAGAAGAGAAAAAAGA
AGAATCTAAAGCGGATGATGCTGAAGAAAAAGTTGAAAAACCAAAAGCTA
AAGTTTCAAAAGGTAAAAATACCAAAGAAACCAAAGAAACCACCACTGCT
ACCAAAACTAATGGTAAAAGAAAGGAACCTGAATCAACAGCCAGTAAACC
AGCTGCTAAAAATACCAAAGAAACTAAGGACACTAAGAATCTAAAGAAAA
AGCCACCAAAAAACCAAAAACCAA----------ATTAAAAAATNTAAAN
AAAAAGCCCCCNAAAAACCNAAAACCNAGNAAAAAAAAAAATTANCCNAG
AATGAAAATTTAATTAATAAAATAAAAAAAAAAATAAAAAAAAAAAATAG
AAAAATAAATAAATAAATAAAAAAAAAAAAAATA

Gap gap included
Contig length 2724
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2802264
End point 2800250
Strand (PLUS/MINUS) MINUS
Number of clones 36
Number of EST 58
Link to clone list U15870
List of clone(s)

est1=SFE869F,1,414
est2=AFJ266F,9,288
est3=CFB212F,9,628
est4=AFD837F,15,508
est5=CHP325F,15,573
est6=CHA537F,17,347
est7=AFF188F,18,627
est8=AFL236F,18,621
est9=CFF640F,18,624
est10=CFG401F,18,625
est11=CFK248F,18,624
est12=CHI626F,18,623
est13=CHI712F,18,628
est14=SFF318F,18,628
est15=SFI628F,18,503
est16=CHI306F,21,605
est17=AFG381F,23,627
est18=CFA540F,23,598
est19=SFH240F,23,627
est20=AFF684F,24,627
est21=AFF761F,24,541
est22=SHC278F,24,605
est23=CHA636F,29,628
est24=CFK485F,30,498
est25=CFF790F,32,626
est26=AHC496F,35,619
est27=SFI564F,35,627
est28=SFG235F,42,503
est29=SFH140F,43,502
est30=SFF536F,67,627
est31=VHC672F,78,713
est32=SLK567F,257,454
est33=AFD837H,538,1537
est34=SFI564Z,1318,1980
est35=SFE869Z,1337,1996
est36=CFF640Z,1338,2111
est37=AFJ266Z,1372,2126
est38=AFL236Z,1393,2158
est39=SFH240Z,1398,2134
est40=SFI628Z,1405,2116
est41=SFF318Z,1408,2129
est42=SFK864F,1430,1975
est43=AFD837Z,1456,1901
est44=SHC278Z,1470,2178
est45=SFD643Z,1471,2217
est46=AFF188Z,1522,2227
est47=CFB212Z,1530,2277
est48=CFK485Z,1535,2277
est49=AFG381Z,1539,2217
est50=CHA137Z,1646,2188
est51=AFF684Z,1652,2088
est52=CFA540Z,1678,2277
est53=CHA236Z,1682,2256
est54=SLK567Z,1716,2160
est55=AFF761Z,1781,2193
est56=SFF536Z,1839,2573
est57=CFG401Z,1871,2571
est58=CFK248Z,2575,2724
Translated Amino Acid sequence
cwptgifksvikfkffivkleqtkkrmatkenkatttttttststtnsnnndsnttsttt
aaaattttttkqpkkdiyvdvdwkeltpigfefntwesmkkegwtfpelkrefkrgvlsh
aqtdkplymflgaqpivegdyafnmpyivvfdcpspppskickasiqggsediynfsdfh
lswspyipsrysnqasnkkykiftlnlqerpgkkiseekqlniqyllpyilipkifktfs
vtpitnvqfilkdckltkeageklikerkqeeeaykkwveenkgkkkdektagptkpptk
lpfkvlkdadgkvtgvtkdfeiyfdklsdsiktypgefvednglvsiyhglhifhqdipi
klqikntkflh*tyknvqvkkslkknn*ifniyfhiflfqkfskhfqlhqlqmfnsy*ri
vn*pkklvkn*skkenkkkrptrngskkikvkrrmkkqqvqpnhqlnyhskf*kmlmaks
lvspkilksisinypivskhiqvnllkimv**rr*lkslikqsemnllklellpkrnmmi
*rlksiltlqrklkimttvksinsihvikniifknmfhqq*idslvmlhklsqmllnsl*
qn*RKLMLTLLKRLQMKIRNHGLQVLKNQKKLKLMMVVIQTLMNLHLKMKNLKKNQRKRL
LKELLKKLLLNQLQLNQLQNNLKRKLLPKKPKADEKSEEKADEKEEKEEKEEKEEEKEEE
KEEEKEEEKEEKEEKETKADDKEEKEEKEAKADEKKEKAEEKKEEKKEEEKKEEEKKEEE
KKEESKADDAEEKVEKPKAKVSKGKNTKETKETTTATKTNGKRKEPESTASKPAAKNTKE
TKDTKNLKKKPPKNQKP---

---IKKXKXKAPXKPKTXXKKKLXXNENLINKIKKKIKKKNRKINK*ikkkki


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllvflnpl*nsnfls*nwnrqkkgwqpkkiklqppplqlvppqltvittivillqql
qqqqqlqqqqlnnqkkismlmligkn*hqsvlnlihgkv*kkkdghsqn*renlkevyfh
mhklinhftcf*vlnqslkvtmhlichillflivhhhhhqkfvkhqfkvvvkiftislis
iyhglhifhqdipiklqikntkflh*tyknvqvkkslkknn*ifniyfhiflfqkfskhf
qlhqlqmfnsy*rivn*pkklvkn*skkenkkkrptrngskkikvkrrmkkqqvqpnhql
nyhskf*kmlmakslvspkilksisinypivskhiqvnllkimv*fpfimvsiysikifq
ssfk*kiqnfyieltrtsr*knl*rktikysiftsiysysknfqnifsytnykcsihikg
l*inqrsw*kinqrkktrrrglqemgrrk*r*keg*knsrsnqttn*itiqsferc*wqs
hwchqrf*nlfr*iir*yqnisr*ic*r*wfsrgdd*sh**snqr*ic*s*sccpkei**
feg*nrfllskes*rl*ql*nl*ilsts*ki*yskicftssk*ilw*cytnfprcs*tlf
nrikgs*c*pc*kdcr*r*eimvfry*kikrnsn**wslfrl**ifi*r*ri*rrtkerg
c*ksc*kscc*tsss*tsskti*kescclrnqklmkslkkklmkkkkkkkkkkkkkkkkk
kkkkkrkkkrkkkkkrklklmikkkkkkkklklmkrkkklkrkkkrkkkkrkkkkrkkkk
rkkknlkrmmlkkklknqklkfqkvkipkkpkkppllpklmvkernlnqqpvnqllkipk
klrtlri*rkshqktknq---

---IKKXKXKAPXKPKTXXKKKLXXNENLINKIKKKIKKKNRKINK*ikkkki

Frame B:
llaywyf*irykiqifyrkigtdkkkdgnqrk*synhhhyn*ylhn*q**qr**yyfnny
ssssnynnnn*ttkkrylc*c*lertntnrf*i*ymgkyekrrmdiprikeri*krctft
ctn**ttlhvfrcstnr*r*lci*yaiyccf*lsitttiknl*sinsrw**rylqfl*fp
fimvsiysikifqssfk*kiqnfyieltrtsr*knl*rktikysiftsiysysknfqnif
sytnykcsihikgl*inqrsw*kinqrkktrrrglqemgrrk*r*keg*knsrsnqttn*
itiqsferc*wqshwchqrf*nlfr*iir*yqnisr*ic*r*wfsfhlswspyipsrysn
qasnkkykiftlnlqerpgkkiseekqlniqyllpyilipkifktfsvtpitnvqfilkd
ckltkeageklikerkqeeeaykkwveenkgkkkdektagptkpptklpfkvlkdadgkv
tgvtkdfeiyfdklsdsiktypgefvednglveemtevidkairdefvkaravaqkkydd
lkaeidsyspkkaedydnckiykfyprhkkyniqkyvspavnrffgnatqtfpdalklsl
telkevdadlvkkiadedkkswssgikksketqiddgrysdsdesssedeeseeepkkev
vkrvvkkaaakpapvkpapkqskkkaaa*etks**kv*rks**krrkrrkrrkrrrkrrr
krrrkgrrkgrkrrkgn*s***rrkrrkrs*s**kerks*rekrrekrrrekrrrekrrr
ekrri*sg*c*rks*ktks*sfkr*kyqrnqrnhhcyqn*w*kkgt*insq*tsc*kyqr
n*gh*eskekatkkpkt---

---lknxxkkppknxkpxkkknxprmki*lik*kkk*kkkiek*ink*kkkk

Frame C:
cwptgifksvikfkffivkleqtkkrmatkenkatttttttststtnsnnndsnttsttt
aaaattttttkqpkkdiyvdvdwkeltpigfefntwesmkkegwtfpelkrefkrgvlsh
aqtdkplymflgaqpivegdyafnmpyivvfdcpspppskickasiqggsediynfsdfh
lswspyipsrysnqasnkkykiftlnlqerpgkkiseekqlniqyllpyilipkifktfs
vtpitnvqfilkdckltkeageklikerkqeeeaykkwveenkgkkkdektagptkpptk
lpfkvlkdadgkvtgvtkdfeiyfdklsdsiktypgefvednglvsiyhglhifhqdipi
klqikntkflh*tyknvqvkkslkknn*ifniyfhiflfqkfskhfqlhqlqmfnsy*ri
vn*pkklvkn*skkenkkkrptrngskkikvkrrmkkqqvqpnhqlnyhskf*kmlmaks
lvspkilksisinypivskhiqvnllkimv**rr*lkslikqsemnllklellpkrnmmi
*rlksiltlqrklkimttvksinsihvikniifknmfhqq*idslvmlhklsqmllnsl*
qn*RKLMLTLLKRLQMKIRNHGLQVLKNQKKLKLMMVVIQTLMNLHLKMKNLKKNQRKRL
LKELLKKLLLNQLQLNQLQNNLKRKLLPKKPKADEKSEEKADEKEEKEEKEEKEEEKEEE
KEEEKEEEKEEKEEKETKADDKEEKEEKEAKADEKKEKAEEKKEEKKEEEKKEEEKKEEE
KKEESKADDAEEKVEKPKAKVSKGKNTKETKETTTATKTNGKRKEPESTASKPAAKNTKE
TKDTKNLKKKPPKNQKP---

---*kx*xkspxktxnxxkkkixxe*kfn**nkkknkkkk*knk*inkkkkn

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15870-1 (Contig-U15870-1Q)
/CSM_Contig/Contig-U15870-1Q.Seq.d
(2734 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15870-1 (Contig-U15870-1Q) /CSM_Contig/Conti... 3881 0.0
Contig-U04043-1 (Contig-U04043-1Q) /CSM_Contig/Conti... 58 8e-08
Contig-U16514-1 (Contig-U16514-1Q) /CSM_Contig/Conti... 56 3e-07
Contig-U16512-1 (Contig-U16512-1Q) /CSM_Contig/Conti... 56 3e-07
Contig-U15883-1 (Contig-U15883-1Q) /CSM_Contig/Conti... 56 3e-07
Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Conti... 56 3e-07
Contig-U15992-1 (Contig-U15992-1Q) /CSM_Contig/Conti... 52 5e-06
Contig-U15776-1 (Contig-U15776-1Q) /CSM_Contig/Conti... 52 5e-06
Contig-U11357-1 (Contig-U11357-1Q) /CSM_Contig/Conti... 52 5e-06
Contig-U10989-1 (Contig-U10989-1Q) /CSM_Contig/Conti... 52 5e-06

>Contig-U15870-1 (Contig-U15870-1Q) /CSM_Contig/Contig-U15870-1Q.Seq.d
Length = 2734

Score = 3881 bits (1958), Expect = 0.0
Identities = 2016/2045 (98%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtatttttaaatccgttataaaattcaaattttttatcgtaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggtatttttaaatccgttataaaattcaaattttttatcgtaaaat 60


Query: 61 tggaacagacnnnnnnnnggatggcaaccaaagaaaataaagctacaaccaccaccacta 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggaacagacaaaaaaaaggatggcaaccaaagaaaataaagctacaaccaccaccacta 120


Query: 121 caactagtacctccacaactaacagtaataacaacgatagtaatactacttcaacaacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caactagtacctccacaactaacagtaataacaacgatagtaatactacttcaacaacta 180


Query: 181 cagcagcagcagcaactacaacaacaacaactaaacaaccnnnnnnngatatctatgttg 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 cagcagcagcagcaactacaacaacaacaactaaacaaccaaaaaaagatatctatgttg 240


Query: 241 atgttgattggaaagaactaacaccaatcggttttgaatttaatacatgggaaagtatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgttgattggaaagaactaacaccaatcggttttgaatttaatacatgggaaagtatga 300


Query: 301 aaaaagaaggatggacattcccagaattaaagagagaatttaaaagaggtgtactttcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaagaaggatggacattcccagaattaaagagagaatttaaaagaggtgtactttcac 360


Query: 361 atgcacaaactgataaaccactttacatgtttttaggtgctcaaccaatcgttgaaggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgcacaaactgataaaccactttacatgtttttaggtgctcaaccaatcgttgaaggtg 420


Query: 421 actatgcatttaatatgccatatattgttgtttttgattgtccatcaccaccaccatcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actatgcatttaatatgccatatattgttgtttttgattgtccatcaccaccaccatcaa 480


Query: 481 aaatttgtaaagcatcaattcaaggtggtagtgaagatatttacaatttctctgatttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatttgtaaagcatcaattcaaggtggtagtgaagatatttacaatttctctgatttcc 540


Query: 541 atttatcatggtctccatatattccatcaagatattccaatcaagcttcaaataaaaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atttatcatggtctccatatattccatcaagatattccaatcaagcttcaaataaaaaat 600


Query: 601 acaaaatttttacattgaacttacaagaacgtccaggtnnnnnnntctctgaagaaaaac 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 601 acaaaatttttacattgaacttacaagaacgtccaggtaaaaaaatctctgaagaaaaac 660


Query: 661 aattaaatattcaatatttacttccatatattcttattccaaaaattttcaaaacatttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aattaaatattcaatatttacttccatatattcttattccaaaaattttcaaaacatttt 720


Query: 721 cagttacaccaattacaaatgttcaattcatattaaaggattgtaaattaaccaaagaag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cagttacaccaattacaaatgttcaattcatattaaaggattgtaaattaaccaaagaag 780


Query: 781 ctggtgaaaaattaatcaaagaaagaaaacaagaagaagaggcctacaagaaatgggtcg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctggtgaaaaattaatcaaagaaagaaaacaagaagaagaggcctacaagaaatgggtcg 840


Query: 841 aagaaaataaaggtaaaaagaaggatgaaaaaacagcaggtccaaccaaaccaccaacta 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aagaaaataaaggtaaaaagaaggatgaaaaaacagcaggtccaaccaaaccaccaacta 900


Query: 901 aattaccattcaaagttttgaaagatgctgatggcaaagtcactggtgtcaccaaagatt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aattaccattcaaagttttgaaagatgctgatggcaaagtcactggtgtcaccaaagatt 960


Query: 961 ttgaaatctatttcgataaattatccgatagtatcaaaacatatccaggtgaatttgttg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ttgaaatctatttcgataaattatccgatagtatcaaaacatatccaggtgaatttgttg 1020


Query: 1021 aagataatggtttagtttccatttatcatggtctccatatattccatcaagatattccaa 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aagataatggtttagtttccatttatcatggtctccatatattccatcaagatattccaa 1080


Query: 1081 tcaagcttcaaataaaaaatacaaaatttttacattgaacttacaagaacgtccaggtnn 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tcaagcttcaaataaaaaatacaaaatttttacattgaacttacaagaacgtccaggtaa 1140


Query: 1141 nnnnntctctgaagaaaaacaattaaatattcaatatttacttccatatattcttattcc 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aaaaatctctgaagaaaaacaattaaatattcaatatttacttccatatattcttattcc 1200


Query: 1201 aaaaattttcaaaacattttcagttacaccaattacaaatgttcaattcatattaaagga 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aaaaattttcaaaacattttcagttacaccaattacaaatgttcaattcatattaaagga 1260


Query: 1261 ttgtaaattaaccaaagaagctggtgaaaaattaatcaaagaaagaaaacaagaagaaga 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ttgtaaattaaccaaagaagctggtgaaaaattaatcaaagaaagaaaacaagaagaaga 1320


Query: 1321 ggcctacaagaaatgggtcgaagaaaataaaggtaaaaagaaggatgaaaaaacagcagg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ggcctacaagaaatgggtcgaagaaaataaaggtaaaaagaaggatgaaaaaacagcagg 1380


Query: 1381 tccaaccaaaccaccaactaaattaccattcaaagttttgaaagatgctgatggcaaagt 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tccaaccaaaccaccaactaaattaccattcaaagttttgaaagatgctgatggcaaagt 1440


Query: 1441 cactggtgtcaccaaagattttgaaatctatttcgataaattatccgatagtatcaaaac 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 cactggtgtcaccaaagattttgaaatctatttcgataaattatccgatagtatcaaaac 1500


Query: 1501 atatccaggtgaatttgttgaagataatggtttagtagaggagatgactgaagtcattga 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 atatccaggtgaatttgttgaagataatggtttagtagaggagatgactgaagtcattga 1560


Query: 1561 taaagcaatcagagatgaatttgttaaagctagagctgttgcccaaaagaaatatgatga 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 taaagcaatcagagatgaatttgttaaagctagagctgttgcccaaaagaaatatgatga 1620


Query: 1621 tttgaaggctgaaatcgattcttactctccaaagaaagctgaagattatgacaactgtaa 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 tttgaaggctgaaatcgattcttactctccaaagaaagctgaagattatgacaactgtaa 1680


Query: 1681 aatctataaattctatccacgtcataaaaaatataatattcaaaaatatgtttcaccagc 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 aatctataaattctatccacgtcataaaaaatataatattcaaaaatatgtttcaccagc 1740


Query: 1741 agtaaatagattctttggtaatgctacacaaactttcccagatgctcttaaactctcttt 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 agtaaatagattctttggtaatgctacacaaactttcccagatgctcttaaactctcttt 1800


Query: 1801 aacagaattaaaggaagttgatgctgaccttgttaaaaagattgcagatgaagataagaa 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 aacagaattaaaggaagttgatgctgaccttgttaaaaagattgcagatgaagataagaa 1860


Query: 1861 atcatggtcttcaggtattaaaaaatcaaaagaaactcaaattgatgatggtcgttattc 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 atcatggtcttcaggtattaaaaaatcaaaagaaactcaaattgatgatggtcgttattc 1920


Query: 1921 agactctgatgaatcttcatctgaagatgaagaatctgaagaagaaccaaagaaagaggt 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 agactctgatgaatcttcatctgaagatgaagaatctgaagaagaaccaaagaaagaggt 1980


Query: 1981 tgttaaaagagttgttaaaaaagctgctgctaaaccagctccagttaaaccagctccaaa 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tgttaaaagagttgttaaaaaagctgctgctaaaccagctccagttaaaccagctccaaa 2040


Query: 2041 acaat 2045
|||||
Sbjct: 2041 acaat 2045


Score = 244 bits (123), Expect = 6e-64
Identities = 123/123 (100%)
Strand = Plus / Plus


Query: 2420 taccaaagaaaccaaagaaaccaccactgctaccaaaactaatggtaaaagaaaggaacc 2479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 taccaaagaaaccaaagaaaccaccactgctaccaaaactaatggtaaaagaaaggaacc 2479


Query: 2480 tgaatcaacagccagtaaaccagctgctaaaaataccaaagaaactaaggacactaagaa 2539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2480 tgaatcaacagccagtaaaccagctgctaaaaataccaaagaaactaaggacactaagaa 2539


Query: 2540 tct 2542
|||
Sbjct: 2540 tct 2542


Score = 42.1 bits (21), Expect = 0.005
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 2642 ttanccnagaatgaaaatttaattaat 2668
|||||||||||||||||||||||||||
Sbjct: 2642 ttanccnagaatgaaaatttaattaat 2668


Score = 36.2 bits (18), Expect = 0.28
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 2507 taaaaataccaaagaaac 2524
||||||||||||||||||
Sbjct: 2414 taaaaataccaaagaaac 2431


>Contig-U04043-1 (Contig-U04043-1Q) /CSM_Contig/Contig-U04043-1Q.Seq.d
Length = 694

Score = 58.0 bits (29), Expect = 8e-08
Identities = 38/41 (92%)
Strand = Plus / Plus


Query: 171 tcaacaactacagcagcagcagcaactacaacaacaacaac 211
|||||||| ||||||||| ||||||| ||||||||||||||
Sbjct: 641 tcaacaacaacagcagcaacagcaacaacaacaacaacaac 681


>Contig-U16514-1 (Contig-U16514-1Q) /CSM_Contig/Contig-U16514-1Q.Seq.d
Length = 744

Score = 56.0 bits (28), Expect = 3e-07
Identities = 37/40 (92%)
Strand = Plus / Plus


Query: 172 caacaactacagcagcagcagcaactacaacaacaacaac 211
||||||| |||||| |||||||||| ||||||||||||||
Sbjct: 550 caacaacaacagcaacagcagcaacaacaacaacaacaac 589


Score = 40.1 bits (20), Expect = 0.018
Identities = 35/40 (87%)
Strand = Plus / Plus


Query: 172 caacaactacagcagcagcagcaactacaacaacaacaac 211
||||||| ||| ||||| ||||| | ||||||||||||||
Sbjct: 547 caacaacaacaacagcaacagcagcaacaacaacaacaac 586


Score = 36.2 bits (18), Expect = 0.28
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 184 cagcagcagcaactacaacaacaaca 209
|||||||| |||| ||||||||||||
Sbjct: 565 cagcagcaacaacaacaacaacaaca 590


Score = 34.2 bits (17), Expect = 1.1
Identities = 29/33 (87%)
Strand = Plus / Plus


Query: 172 caacaactacagcagcagcagcaactacaacaa 204
||||||| ||| ||||| || ||||||||||||
Sbjct: 577 caacaacaacaacagcaacaacaactacaacaa 609


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,308
Number of Sequences: 8402
Number of extensions: 69308
Number of successful extensions: 16554
Number of sequences better than 10.0: 1190
length of query: 2734
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2717
effective length of database: 7,932,708
effective search space: 21553167636
effective search space used: 21553167636
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.22
Homology vs DNA
Query= Contig-U15870-1 (Contig-U15870-1Q) /CSM_Contig/Contig-U15870-1Q.Seq.d
(2734 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ344493) Dictyostelium discoideum cDNA clone:dda19c18, 3' ... 1316 0.0 1
(BJ372391) Dictyostelium discoideum cDNA clone:ddc12o10, 3' ... 1308 0.0 1
(BJ345320) Dictyostelium discoideum cDNA clone:dda23g10, 3' ... 1279 0.0 1
(BJ400931) Dictyostelium discoideum cDNA clone:dds15o10, 3' ... 1261 0.0 1
(BJ398113) Dictyostelium discoideum cDNA clone:dds11d05, 3' ... 1249 0.0 1
(BJ402802) Dictyostelium discoideum cDNA clone:dds18g08, 3' ... 1225 0.0 1
(BJ404548) Dictyostelium discoideum cDNA clone:dds28k20, 3' ... 1126 0.0 1
(BJ399986) Dictyostelium discoideum cDNA clone:dds8e12, 3' e... 1116 0.0 1
(BJ390517) Dictyostelium discoideum cDNA clone:dds22p16, 5' ... 1082 0.0 1
(BJ419634) Dictyostelium discoideum cDNA clone:ddv36o18, 5' ... 815 0.0 3
(BJ340171) Dictyostelium discoideum cDNA clone:dda11o21, 3' ... 1027 0.0 1
(BJ323721) Dictyostelium discoideum cDNA clone:dda11o21, 5' ... 791 0.0 3
(BJ359136) Dictyostelium discoideum cDNA clone:ddc13b02, 5' ... 789 0.0 3
(BJ362359) Dictyostelium discoideum cDNA clone:ddc21o12, 5' ... 787 0.0 3
(BJ366472) Dictyostelium discoideum cDNA clone:ddc39h03, 5' ... 787 0.0 3
(BJ366517) Dictyostelium discoideum cDNA clone:ddc39c08, 5' ... 785 0.0 3
(BJ386864) Dictyostelium discoideum cDNA clone:dds11d05, 5' ... 785 0.0 3
(BJ323905) Dictyostelium discoideum cDNA clone:dda12g22, 5' ... 791 0.0 3
(BJ328207) Dictyostelium discoideum cDNA clone:dda23g10, 5' ... 779 0.0 3
(BJ391177) Dictyostelium discoideum cDNA clone:dds15o10, 5' ... 791 0.0 3
(BJ325306) Dictyostelium discoideum cDNA clone:dda13b21, 5' ... 791 0.0 3
(BJ359018) Dictyostelium discoideum cDNA clone:ddc12o10, 5' ... 787 0.0 3
(BJ373433) Dictyostelium discoideum cDNA clone:ddc3g04, 3' e... 1007 0.0 1
(BJ362750) Dictyostelium discoideum cDNA clone:ddc23g10, 5' ... 795 0.0 3
(BJ330068) Dictyostelium discoideum cDNA clone:dda27d09, 5' ... 795 0.0 3
(BJ376277) Dictyostelium discoideum cDNA clone:ddc21j22, 3' ... 997 0.0 1
(BJ359093) Dictyostelium discoideum cDNA clone:ddc12d23, 5' ... 791 0.0 3
(BJ359878) Dictyostelium discoideum cDNA clone:ddc3g04, 5' e... 795 0.0 4
(BJ389424) Dictyostelium discoideum cDNA clone:dds18o15, 5' ... 791 0.0 3
(BJ342384) Dictyostelium discoideum cDNA clone:dda13b21, 3' ... 987 0.0 1
(BJ366204) Dictyostelium discoideum cDNA clone:ddc38l01, 5' ... 749 0.0 3
(BJ392770) Dictyostelium discoideum cDNA clone:dds28k20, 5' ... 747 0.0 3
(BJ387096) Dictyostelium discoideum cDNA clone:dds12g09, 5' ... 791 0.0 2
(BJ331580) Dictyostelium discoideum cDNA clone:dda35p24, 5' ... 775 0.0 4
(BJ329690) Dictyostelium discoideum cDNA clone:dda25n24, 5' ... 347 0.0 4
(BJ359776) Dictyostelium discoideum cDNA clone:ddc2o09, 5' e... 466 0.0 5
(BJ369847) Dictyostelium discoideum cDNA clone:ddc52b07, 5' ... 686 0.0 5
(BJ323862) Dictyostelium discoideum cDNA clone:dda12j15, 5' ... 620 0.0 3
(BJ341831) Dictyostelium discoideum cDNA clone:dda8j10, 3' e... 745 0.0 3
(BJ389318) Dictyostelium discoideum cDNA clone:dds18g08, 5' ... 545 0.0 3
(BJ324849) Dictyostelium discoideum cDNA clone:dda8j10, 5' e... 555 0.0 4
(BJ362460) Dictyostelium discoideum cDNA clone:ddc21j22, 5' ... 537 0.0 3
(BJ391333) Dictyostelium discoideum cDNA clone:dds13e10, 5' ... 545 0.0 3
(BJ377037) Dictyostelium discoideum cDNA clone:ddc22i09, 3' ... 708 0.0 1
(BJ377029) Dictyostelium discoideum cDNA clone:ddc22g10, 3' ... 700 0.0 1
(BJ373269) Dictyostelium discoideum cDNA clone:ddc2o09, 3' e... 698 0.0 1
(BJ391176) Dictyostelium discoideum cDNA clone:dds15o09, 5' ... 525 0.0 3
(AU054083) Dictyostelium discoideum slug cDNA, clone SLK567. 638 e-178 1
(BJ340376) Dictyostelium discoideum cDNA clone:dda12g22, 3' ... 317 e-178 6
(BJ386775) Dictyostelium discoideum cDNA clone:dds10j18, 5' ... 355 e-174 3
(BJ340328) Dictyostelium discoideum cDNA clone:dda12j15, 3' ... 500 e-136 1
(BJ398016) Dictyostelium discoideum cDNA clone:dds10j18, 3' ... 432 e-128 3
(BJ362757) Dictyostelium discoideum cDNA clone:ddc23i09, 5' ... 222 e-115 4
(BJ398404) Dictyostelium discoideum cDNA clone:dds12g09, 3' ... 385 e-114 2
(AU060594) Dictyostelium discoideum slug cDNA, clone SLK567. 392 e-104 1
(BJ372526) Dictyostelium discoideum cDNA clone:ddc13b02, 3' ... 331 1e-91 2
(BJ327184) Dictyostelium discoideum cDNA clone:dda19c18, 5' ... 184 2e-88 4
(BJ402922) Dictyostelium discoideum cDNA clone:dds18o15, 3' ... 266 1e-78 2
(AX344565) Sequence 16 from Patent WO0200932. 44 1e-05 17
(CS374589) Sequence 692 from Patent WO2006034879. 48 0.002 3
(ET686230) CHO_OF369xi01r1.ab1 CHO_OF Nicotiana tabacum geno... 42 0.005 2
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 36 0.010 23
(AC093245) Homo sapiens chromosome 5 clone RP11-114J13, comp... 38 0.024 7
(EK378041) 1095469448520 Global-Ocean-Sampling_GS-31-01-01-1... 54 0.029 1
(BJ414056) Dictyostelium discoideum cDNA clone:ddv17m20, 5' ... 54 0.029 1
(BJ331935) Dictyostelium discoideum cDNA clone:dda37i14, 5' ... 54 0.029 1
(BD453024) Diagnosis of Diseases Associated with tumor suppr... 34 0.034 9
(AX344502) Sequence 349 from Patent WO0200926. 34 0.034 9
(AX251503) Sequence 471 from Patent WO0168912. 34 0.034 9
(DW067183) CLLY6649.b1_B07.ab1 CLL(XYZ) lettuce saligna Lact... 40 0.084 2
(CR376787) Zebrafish DNA sequence from clone DKEY-33C9 in li... 52 0.11 1
(BC054606) Danio rerio acyl-Coenzyme A dehydrogenase, very l... 52 0.11 1
(CT030214) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 52 0.11 1
(EH997914) AGENCOURT_97792792 NIH_ZGC_7 Danio rerio cDNA clo... 52 0.11 1
(EH530849) FDR107-P00058-DEPE-R_K05 FDR107 Danio rerio cDNA ... 52 0.11 1
(EH504668) FDR107-P00058-DEPE-F_K05 FDR107 Danio rerio cDNA ... 52 0.11 1
(EH460868) FDR103-P00009-DEPE-R_L04 FDR103 Danio rerio cDNA ... 52 0.11 1
(EE713851) AGENCOURT_90119811 NIH_ZGC_28 Danio rerio cDNA cl... 52 0.11 1
(EE323793) AGENCOURT_86335108 NIH_ZGC_32 Danio rerio cDNA cl... 52 0.11 1
(EE304050) AGENCOURT_85388754 NIH_ZGC_26 Danio rerio cDNA cl... 52 0.11 1
(EB894798) 9910088 ZF26XL Danio rerio cDNA clone 3515275, mR... 52 0.11 1
(EB894154) 9888288 ZF26XL Danio rerio cDNA clone 3511596, mR... 52 0.11 1
(EB885231) 9194185 ZF26 Danio rerio cDNA clone 3283024, mRNA... 52 0.11 1
(DV592926) AGENCOURT_61891332 NIH_ZGC_14 Danio rerio cDNA cl... 52 0.11 1
(CV491760) AGENCOURT_33019377 NIH_ZGC_15 Danio rerio cDNA cl... 52 0.11 1
(CT736566) Danio rerio EST, clone ZF_mu_285b13 3'. 52 0.11 1
(CN173586) AGENCOURT_21057240 NIH_ZGC_8 Danio rerio cDNA clo... 52 0.11 1
(CJ459349) Macaca fascicularis mRNA, clone: QmoA-11531, 5' e... 52 0.11 1
(AI964241) EST269355 zebrafish T0315, Steve Ekker Danio reri... 52 0.11 1
(AI942769) fc75e01.y1 Zebrafish WashU MPIMG EST Danio rerio ... 52 0.11 1
(C25720) Dictyostelium discoideum gamete cDNA, clone FC-AW04. 52 0.11 1
(BM280072) zah6568 Zebrafish Adult hearts cDNA library Danio... 52 0.11 1
(BJ416340) Dictyostelium discoideum cDNA clone:ddv25i21, 5' ... 52 0.11 1
(BJ415926) Dictyostelium discoideum cDNA clone:ddv24o02, 5' ... 52 0.11 1
(BJ414126) Dictyostelium discoideum cDNA clone:ddv18l01, 5' ... 52 0.11 1
(BJ395328) Dictyostelium discoideum cDNA clone:dds38a13, 5' ... 52 0.11 1
(BJ334699) Dictyostelium discoideum cDNA clone:dda47a14, 5' ... 52 0.11 1
(BI885519) fo72f05.x1 zebrafish gridded kidney Danio rerio c... 52 0.11 1
(BI705678) fp14f06.x3 zebrafish gridded kidney Danio rerio c... 52 0.11 1
(AM458856) Vitis vinifera contig VV78X151315.6, whole genome... 40 0.13 2
(BJ387278) Dictyostelium discoideum cDNA clone:dds1c09, 5' e... 44 0.18 2
(AM424873) Vitis vinifera contig VV78X088960.5, whole genome... 36 0.18 5
(BJ367550) Dictyostelium discoideum cDNA clone:ddc43j04, 5' ... 40 0.24 2
(CZ461516) MCF750m24TF Human MCF7 breast cancer cell line li... 46 0.29 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 40 0.30 13
(BJ362625) Dictyostelium discoideum cDNA clone:ddc22a23, 5' ... 40 0.33 2
(BJ326166) Dictyostelium discoideum cDNA clone:dda15d16, 5' ... 40 0.33 2
(AC079285) Arabidopsis thaliana chromosome 1 BAC T12I7 genom... 50 0.45 1
(AC231327) Monodelphis domestica clone VMRC18-689B3, WORKING... 50 0.45 1
(BJ416023) Dictyostelium discoideum cDNA clone:ddv24i16, 5' ... 50 0.45 1
(BJ363011) Dictyostelium discoideum cDNA clone:ddc24f16, 5' ... 50 0.45 1
(BJ338419) Dictyostelium discoideum cDNA clone:dda61o08, 5' ... 50 0.45 1
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 40 0.49 10
(EA676521) Sequence 55400 from patent US 7365185. 38 0.51 2
(AC010411) Homo sapiens chromosome 5 clone CTD-2165P17, comp... 40 0.61 11
(CS468856) Sequence 47 from Patent EP1748080. 38 0.61 5
(CS468855) Sequence 46 from Patent EP1748080. 38 0.61 5
(CS419333) Sequence 47 from Patent WO2006094836. 38 0.61 5
(CS419332) Sequence 46 from Patent WO2006094836. 38 0.61 5
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 38 0.65 23
(BJ331889) Dictyostelium discoideum cDNA clone:dda37n12, 5' ... 46 0.69 2
(AB172486) Macaca fascicularis brain cDNA clone: QflA-18347,... 46 0.72 2
(BJ325655) Dictyostelium discoideum cDNA clone:dda1h20, 5' e... 42 0.73 2
(AY217738) Eimeria tenella apicoplast, complete genome. 34 0.81 7
(BJ387425) Dictyostelium discoideum cDNA clone:dds2b13, 5' e... 38 0.92 3
(AC092273) Homo sapiens chromosome 5 clone CTC-445G3, WORKIN... 38 1.0 6
(EJ616146) 1092963020776 Global-Ocean-Sampling_GS-29-01-01-1... 44 1.0 2
(DN570574) 93953133 Sea Urchin primary mesenchyme cell cDNA ... 38 1.1 4
(EV466577) MDEST740 Hessian fly salivary gland cDNA Library ... 36 1.2 2
(AC207600) Medicago truncatula chromosome 2 BAC clone mth2-3... 38 1.3 9
(AF098993) Caenorhabditis elegans cosmid T10B11, complete se... 42 1.6 3
(AM477505) Vitis vinifera contig VV78X063132.15, whole genom... 44 1.7 3
(AC151093) Bos taurus clone CH240-127P9, WORKING DRAFT SEQUE... 48 1.8 1
(FH972618) CHO_OF6813xd22f1.ab1 CHO_OF6 Nicotiana tabacum ge... 48 1.8 1
(FH713690) CHO_OF5040xf17r1.ab1 CHO_OF5 Nicotiana tabacum ge... 48 1.8 1
(FH314990) CHO_OF4484xn10r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 1.8 1
(ET978909) CHO_OF734xk06r1.ab1 CHO_OF Nicotiana tabacum geno... 48 1.8 1
(ET834227) CHO_OF811xj08f1.ab1 CHO_OF Nicotiana tabacum geno... 48 1.8 1
(DU650280) OG_ABa0069O12.r OG_ABa Oryza granulata genomic cl... 48 1.8 1
(AL409432) T7 end of clone AV0AA014H07 of library AV0AA from... 48 1.8 1
(CE524502) tigr-gss-dog-17000365736882 Dog Library Canis lup... 48 1.8 1
(AV519865) Arabidopsis thaliana cDNA clone:APD69d08F, 3' end. 48 1.8 1
(CJ470707) Macaca fascicularis mRNA, clone: QorA-10261, 5' e... 48 1.8 1
(CJ465009) Macaca fascicularis mRNA, clone: QnpA-13959, 5' e... 48 1.8 1
(BJ396890) Dictyostelium discoideum cDNA clone:dds44g08, 5' ... 48 1.8 1
(BJ396533) Dictyostelium discoideum cDNA clone:dds43c06, 5' ... 48 1.8 1
(BJ394100) Dictyostelium discoideum cDNA clone:dds33e22, 5' ... 48 1.8 1
(BJ394071) Dictyostelium discoideum cDNA clone:dds33n15, 5' ... 48 1.8 1
(BJ394032) Dictyostelium discoideum cDNA clone:dds33d17, 5' ... 48 1.8 1
(BJ393997) Dictyostelium discoideum cDNA clone:dds33m08, 5' ... 48 1.8 1
(BJ392404) Dictyostelium discoideum cDNA clone:dds27d14, 5' ... 48 1.8 1
(BJ389708) Dictyostelium discoideum cDNA clone:dds19d24, 5' ... 48 1.8 1
(BJ389130) Dictyostelium discoideum cDNA clone:dds17j13, 5' ... 48 1.8 1
(BJ387486) Dictyostelium discoideum cDNA clone:dds2k21, 5' e... 48 1.8 1
(BJ370358) Dictyostelium discoideum cDNA clone:ddc53h20, 5' ... 48 1.8 1
(BJ334585) Dictyostelium discoideum cDNA clone:dda47e05, 5' ... 48 1.8 1
(BI461438) 603206313F1 NIH_MGC_97 Homo sapiens cDNA clone IM... 48 1.8 1
(EY183075) CBTI8915.b2_E21.ab1:P Triphysaria pusilla root ti... 48 1.8 1
(EY173191) CBTI4059.g1_E08.ab1:P Triphysaria pusilla root ti... 48 1.8 1
(CP000312) Clostridium perfringens SM101, complete genome. 48 1.8 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 48 1.8 1
(CU694258) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.9 5
(AX345156) Sequence 227 from Patent WO0200928. 36 1.9 5
(AC008856) Homo sapiens chromosome 5 clone CTD-2178N20, comp... 40 1.9 9
(CB072974) taa26d11.y1 Hydra EST -II Hydra magnipapillata cD... 42 2.1 2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 2.1 11
(AM472952) Vitis vinifera contig VV78X041055.2, whole genome... 36 2.5 4
(BG991819) PM0-HT1076-310101-003-c08 HT1076 Homo sapiens cDN... 46 2.5 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 2.6 21
(AX348795) Sequence 253 from Patent WO0202807. 38 2.6 4
(AX344394) Sequence 241 from Patent WO0200926. 38 2.6 4
(BJ326377) Dictyostelium discoideum cDNA clone:dda16c11, 5' ... 44 2.8 2
(EY630301) CAWW21621.rev CAWW Capitella sp. I ECS-2004 Subtr... 36 2.9 2
(AM482956) Vitis vinifera, whole genome shotgun sequence, co... 40 2.9 4
(DJ386678) Diagnosis of Diseases Associated with Metastasis. 40 3.0 5
(AX281474) Sequence 138 from Patent WO0177376. 40 3.0 5
(BJ337207) Dictyostelium discoideum cDNA clone:dda56k14, 5' ... 42 3.0 2
(DN811557) ACAC-aab41g03.g1 Hydra EST UCI 7 Hydra magnipapil... 42 3.2 2
(AC154760) Mus musculus BAC clone RP24-414E6 from chromosome... 34 3.4 2
(AM446424) Vitis vinifera contig VV78X244893.9, whole genome... 46 3.5 2
(AC197688) Zea mays chromosome 5 clone CH201-566J16; ZMMBBc0... 36 3.5 2
(AX348899) Sequence 357 from Patent WO0202807. 38 3.5 4
(AX344490) Sequence 337 from Patent WO0200926. 38 3.5 4
(AC191775) Zea mays chromosome 5 clone ZMMBBb-129K24; ZMMBBb... 36 3.5 2
(CR925751) Zebrafish DNA sequence from clone DKEY-264M23 in ... 32 3.5 2
(B90730) CIT-HSP-2169N13.TF CIT-HSP Homo sapiens genomic clo... 38 3.6 2
(AX347057) Sequence 2128 from Patent WO0200928. 36 3.7 5
(EY310704) CAWX23066.rev CAWX Helobdella robusta Primary Ear... 36 3.7 2
(EA771730) Sequence 14 from patent US 7381808. 34 3.7 6
(DD080724) Method and nucleic acids for the differentiation ... 34 3.7 6
(DD061418) Methods and nucleic acids for the analysis of he... 34 3.7 6
(DD061272) Methods and nucleic acids for the analysis of he... 34 3.7 6
(BD452715) Diagnosis of Diseases Associated with tumor suppr... 34 3.7 6
(AX767540) Sequence 188 from Patent WO03044226. 34 3.7 6
(AX767464) Sequence 112 from Patent WO03044226. 34 3.7 6
(AX659043) Sequence 14 from Patent WO02103041. 34 3.7 6
(AX657769) Sequence 14 from Patent WO02103042. 34 3.7 6
(AX598980) Sequence 320 from Patent WO02077272. 34 3.7 6
(AX598834) Sequence 174 from Patent WO02077272. 34 3.7 6
(AX349122) Sequence 48 from Patent WO0202808. 34 3.7 6
(AX347401) Sequence 48 from Patent WO0200705. 34 3.7 6
(AX251194) Sequence 162 from Patent WO0168912. 34 3.7 6
(DJ089129) CHIMPANZEE ADENOVIRUS VACCINE CARRIERS. 34 3.7 2
(CS138465) Sequence 3 from Patent WO2005071093. 34 3.7 2
(AY530877) Simian adenovirus 23 strain ATCC VR-592, complete... 34 3.7 2
(EA307461) Sequence 2 from patent US 7291498. 34 3.7 2
(EA271263) Sequence 5 from patent US 7247472. 34 3.7 2
(DJ352113) Methods of Generating Chimeric Adenoviruses and U... 34 3.7 2
(DI136784) Simian Adenovirus Nucleic Acid and Amino Acid Seq... 34 3.7 2
(DD170639) Simian Adenovirus Nucleic Acid and Amino Acid Seq... 34 3.7 2
(CQ982397) Sequence 2 from Patent WO2005001103. 34 3.7 2
(CJ454173) Macaca fascicularis mRNA, clone: QflA-19904, 5' e... 38 3.9 3
(ET919627) CHO_OF209xp16r1.ab1 CHO_OF Nicotiana tabacum geno... 38 3.9 2
(DU006654) 303718 Tomato MboI BAC Library Solanum lycopersic... 40 4.5 2
(BX157745) Danio rerio genomic clone DKEY-151J2, genomic sur... 32 4.6 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 4.6 18
(DD010736) Diagnosis of known genetic Parameters within the ... 36 5.2 14
(CD331520) StrPu537.004343 Sea urchin embryo 20hr blastula s... 38 5.3 2
(EA703414) Sequence 82293 from patent US 7365185. 38 5.6 3
(AX346353) Sequence 1424 from Patent WO0200928. 38 5.9 4
(CD333127) StrPu537.005950 Sea urchin embryo 20hr blastula s... 38 5.9 2
(BJ389181) Dictyostelium discoideum cDNA clone:dds17f20, 5' ... 38 6.4 2
(AP004476) Lotus japonicus genomic DNA, chromosome 2, clone:... 38 6.6 4
(AM434141) Vitis vinifera contig VV78X023060.13, whole genom... 40 6.7 2
(CT027611) Zebrafish DNA sequence from clone CH211-100P3 in ... 46 7.0 1
(CR848787) Zebrafish DNA sequence from clone DKEY-287E9 in l... 46 7.0 1
(BC158961) Xenopus tropicalis tetratricopeptide repeat domai... 46 7.0 1
(BK000526) TPA_exp: Homo sapiens splicing regulator nPTB1 (P... 46 7.0 1
(EU176551) Synthetic construct Homo sapiens clone IMAGE:1000... 46 7.0 1
(DQ891027) Synthetic construct clone IMAGE:100003657; FLH168... 46 7.0 1
(AC126442) Mus musculus BAC clone RP23-453M12 from chromosom... 46 7.0 1
(AC202851) Macaca mulatta BAC CH250-309J8 (Children's Hospi... 46 7.0 1
(AB170513) Macaca fascicularis brain cDNA clone: QmoA-11225,... 46 7.0 1
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 46 7.0 1
(AP002838) Oryza sativa Japonica Group genomic DNA, chromoso... 46 7.0 1
(AP001168) Oryza sativa Japonica Group genomic DNA, chromoso... 46 7.0 1
(EA693411) Sequence 72290 from patent US 7365185. 46 7.0 1
(EA064037) Sequence 1862 from patent US 7171311. 46 7.0 1
(DJ302617) Method for identification of useful proteins deri... 46 7.0 1
(DD495269) A nucleotide sequence having a function for suppr... 46 7.0 1
(DD416527) Diagnosis and Prognosis of Breast Cancer Patients. 46 7.0 1
(DD333650) A method of testing a sensitivity of tumor cells ... 46 7.0 1
(DD131276) Diagnosis and Prognosis of Breast Cancer Patients. 46 7.0 1
(CQ724929) Sequence 10863 from Patent WO02068579. 46 7.0 1
(AR339607) Sequence 1098 from patent US 6569662. 46 7.0 1
(BC016582) Homo sapiens polypyrimidine tract binding protein... 46 7.0 1
(AL357150) Human DNA sequence from clone RP11-122C9 on chrom... 46 7.0 1
(AL121939) Human DNA sequence from clone RP1-223E3 on chromo... 46 7.0 1
(AK299922) Homo sapiens cDNA FLJ55583 complete cds, highly s... 46 7.0 1
(AK299897) Homo sapiens cDNA FLJ55936 complete cds, highly s... 46 7.0 1
(AK299755) Homo sapiens cDNA FLJ60858 complete cds, highly s... 46 7.0 1
(AK295384) Homo sapiens cDNA FLJ55578 complete cds, highly s... 46 7.0 1
(AK092216) Homo sapiens cDNA FLJ34897 fis, clone NT2NE201827... 46 7.0 1
(AK025333) Homo sapiens cDNA: FLJ21680 fis, clone COL09235, ... 46 7.0 1
(AF530585) Homo sapiens truncated non-neuronal splice varian... 46 7.0 1
(AF530584) Homo sapiens truncated non-neuronal splice varian... 46 7.0 1
(AF530583) Homo sapiens truncated non-neuronal splice varian... 46 7.0 1
(AF530582) Homo sapiens truncated non-neuronal splice varian... 46 7.0 1
(AF530581) Homo sapiens non-neuronal splice variant nPTB4 (P... 46 7.0 1
(AF530580) Homo sapiens non-neuronal splice variant nPTB3 (P... 46 7.0 1
(AF176085) Homo sapiens neural polypyrimidine tract binding ... 46 7.0 1
(AC097635) Homo sapiens chromosome 3 clone RP11-263O21, comp... 46 7.0 1
(AB051233) Homo sapiens PTBLP mRNA for PTB-like protein S, c... 46 7.0 1
(AB051232) Homo sapiens PTBLP mRNA for PTB-like protein L, c... 46 7.0 1
(AC140747) Rattus norvegicus clone CH230-101E11, WORKING DRA... 46 7.0 1
(AC122960) Rattus norvegicus clone CH230-65H24, *** SEQUENCI... 46 7.0 1
(AC098167) Rattus norvegicus clone CH230-17K2, WORKING DRAFT... 46 7.0 1
(AC095249) Rattus norvegicus clone CH230-10C9, *** SEQUENCIN... 46 7.0 1
(AC095168) Rattus norvegicus clone CH230-8L12, *** SEQUENCIN... 46 7.0 1
(CU855536) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 7.0 1
(AC090028) Homo sapiens chromosome 3q clone RP11-299G2, *** ... 46 7.0 1
(AC069207) Homo sapiens chromosome 3 clone RP11-809O24, WORK... 46 7.0 1
(AP010058) Lotus japonicus genomic DNA, clone: LjT35E05, TM0... 46 7.0 1
(AC025706) Homo sapiens chromosome 1 clone RP11-122C9, WORKI... 46 7.0 1
(AY415411) Pan troglodytes PTBP2 gene, VIRTUAL TRANSCRIPT, p... 46 7.0 1
(AY415410) Homo sapiens PTBP2 gene, VIRTUAL TRANSCRIPT, part... 46 7.0 1
(ER596266) 1093016223969 Global-Ocean-Sampling_GS-36-01-01-2... 46 7.0 1
(EJ381712) 1092963763638 Global-Ocean-Sampling_GS-28-01-01-1... 46 7.0 1
(EJ308380) 1095390121130 Global-Ocean-Sampling_GS-27-01-01-1... 46 7.0 1
(EI209525) MUGQ_CH252P202G02T7_CN317_009 CHORI-252 Vervet Mo... 46 7.0 1
(CT204485) Sus scrofa genomic clone PigE-256A19, genomic sur... 46 7.0 1
(CR876490) Sus scrofa BES. 46 7.0 1
(ES304584) -48-O04 Bermudagrass Normalized cDNA Library Cyno... 46 7.0 1
(ES304019) -47-F14 Bermudagrass Normalized cDNA Library Cyno... 46 7.0 1
(ES300000) _22Y_F11 Bermudagrass Normalized cDNA Library Cyn... 46 7.0 1
(EL868733) CBXT22041.b1 NICHD_XGC_trop_25 Xenopus (Silurana)... 46 7.0 1
(EL677610) CBST8546.rev NICHD_XGC_tropThy1 Xenopus (Silurana... 46 7.0 1
(EE206921) c4n08z1.f1 Danio rerio 10am (morning) eye/brain c... 46 7.0 1
(AV726556) Homo sapiens cDNA clone:HTCBFF08, 5'end, expresse... 46 7.0 1
(DT412026) JGI_CABI11085.fwd NIH_XGC_tropOvi1 Xenopus (Silur... 46 7.0 1
(DT412025) JGI_CABI11085.rev NIH_XGC_tropOvi1 Xenopus (Silur... 46 7.0 1
(DT410914) JGI_CABI10475.fwd NIH_XGC_tropOvi1 Xenopus (Silur... 46 7.0 1
(DT398013) JGI_CABI2002.fwd NIH_XGC_tropOvi1 Xenopus (Silura... 46 7.0 1
(AU266366) Dictyostelium discoideum vegetative cDNA clone:VS... 46 7.0 1
(DR981001) 0010 Miamiensis avidus YS1 cDNA Miamiensis avidus... 46 7.0 1
(DN086208) JGI_CABE1104.fwd NIH_XGC_tropOva1 Xenopus (Silura... 46 7.0 1
(DN081212) JGI_CABD12896.rev NIH_XGC_tropLun1 Xenopus (Silur... 46 7.0 1
(DN054741) JGI_CABA8792.fwd NIH_XGC_tropKid1 Xenopus (Silura... 46 7.0 1
(DN054740) JGI_CABA8792.rev NIH_XGC_tropKid1 Xenopus (Silura... 46 7.0 1
(DC174459) Xenopus (Silurana) tropicalis NBRP cDNA clone: st... 46 7.0 1
(DB258635) Homo sapiens cDNA clone UTERU2015249, 5' end, mRN... 46 7.0 1
(AM788041) Nicotiana tabacum EST, clone nt005237067. 46 7.0 1
(DA812040) Homo sapiens cDNA clone OVARC1000559, 5' end, mRN... 46 7.0 1
(DA632269) Homo sapiens cDNA clone KIDNE2013823, 5' end, mRN... 46 7.0 1
(DA559281) Homo sapiens cDNA clone HCHON2010401, 5' end, mRN... 46 7.0 1
(DA283618) Homo sapiens cDNA clone BRCOC2013272, 5' end, mRN... 46 7.0 1
(DA268027) Homo sapiens cDNA clone BRCAN2021842, 5' end, mRN... 46 7.0 1
(DA165283) Homo sapiens cDNA clone BRAMY2026260, 5' end, mRN... 46 7.0 1
(DA065050) Homo sapiens cDNA clone BRACE2014368, 5' end, mRN... 46 7.0 1
(CX916361) JGI_CAAN5566.rev NIH_XGC_tropTe4 Xenopus (Siluran... 46 7.0 1
(CX500345) JGI_XZG31705.rev NIH_XGC_tropGas7 Xenopus (Silura... 46 7.0 1
(CX471455) JGI_XZG4988.rev NIH_XGC_tropGas7 Xenopus (Siluran... 46 7.0 1
(CX462784) JGI_XZG25550.fwd NIH_XGC_tropGas7 Xenopus (Silura... 46 7.0 1
(CX461318) JGI_XZG24679.rev NIH_XGC_tropGas7 Xenopus (Silura... 46 7.0 1
(CX441984) JGI_XZG60889.fwd NIH_XGC_tropGas7 Xenopus (Silura... 46 7.0 1
(CX399671) JGI_XZT3964.fwd NIH_XGC_tropTad5 Xenopus (Siluran... 46 7.0 1
(CX362089) JGI_XZT42133.rev NIH_XGC_tropTad5 Xenopus (Silura... 46 7.0 1
(CR540541) Pongo abelii mRNA; EST DKFZp459M2112_r1 (from clo... 46 7.0 1
(CJ492894) Macaca fascicularis mRNA, clone: QtsA-20890, 5' e... 46 7.0 1
(CJ467324) Macaca fascicularis mRNA, clone: QnpA-16807, 5' e... 46 7.0 1
(CJ445884) Macaca fascicularis mRNA, clone: QflA-11047, 5' e... 46 7.0 1
(CJ445534) Macaca fascicularis mRNA, clone: QflA-10679, 5' e... 46 7.0 1
(CJ439012) Macaca fascicularis mRNA, clone: QccE-16259, 5' e... 46 7.0 1
(CJ433561) Macaca fascicularis mRNA, clone: QccE-10518, 5' e... 46 7.0 1
(CI003483) Oryza sativa Japonica Group cDNA, clone: 003-M125... 46 7.0 1
(CD558798) AGENCOURT_14400570 NIH_MGC_181 Homo sapiens cDNA ... 46 7.0 1
(CB130392) K-EST0180289 L12JSHC0 Homo sapiens cDNA clone L12... 46 7.0 1
(BX764825) Xenopus tropicalis EST, clone TGas139p14 3'. 46 7.0 1
(BX751891) Xenopus tropicalis EST, clone TGas079h10 3'. 46 7.0 1
(BX693601) Xenopus tropicalis EST, clone TNeu087d20 3'. 46 7.0 1
(BQ327496) MR1-RT0029-131100-001-a09 RT0029 Homo sapiens cDN... 46 7.0 1
(BP349056) Homo sapiens cDNA clone: SZR02977, Sugano cDNA li... 46 7.0 1
(BP221528) Homo sapiens cDNA clone: COL09235, Sugano cDNA li... 46 7.0 1
(BM278384) As_tgz_58A06_SKPL Ascaris suum adult male testis ... 46 7.0 1
(BJ416799) Dictyostelium discoideum cDNA clone:ddv27h10, 5' ... 46 7.0 1
(BJ415810) Dictyostelium discoideum cDNA clone:ddv23g20, 5' ... 46 7.0 1
(BJ415172) Dictyostelium discoideum cDNA clone:ddv21n13, 5' ... 46 7.0 1
(BJ396833) Dictyostelium discoideum cDNA clone:dds44j05, 5' ... 46 7.0 1
(BJ392482) Dictyostelium discoideum cDNA clone:dds27f23, 5' ... 46 7.0 1
(BJ392469) Dictyostelium discoideum cDNA clone:dds27c23, 5' ... 46 7.0 1
(BJ391999) Dictyostelium discoideum cDNA clone:dds26b05, 5' ... 46 7.0 1
(BJ391316) Dictyostelium discoideum cDNA clone:dds13n05, 5' ... 46 7.0 1
(BJ389639) Dictyostelium discoideum cDNA clone:dds19d13, 5' ... 46 7.0 1
(BJ389633) Dictyostelium discoideum cDNA clone:dds19b15, 5' ... 46 7.0 1
(BJ388142) Dictyostelium discoideum cDNA clone:dds8j06, 5' e... 46 7.0 1
(BJ386832) Dictyostelium discoideum cDNA clone:dds10k24, 5' ... 46 7.0 1
(BJ386729) Dictyostelium discoideum cDNA clone:dds10i10, 5' ... 46 7.0 1
(BJ363212) Dictyostelium discoideum cDNA clone:ddc25h14, 5' ... 46 7.0 1
(BJ363007) Dictyostelium discoideum cDNA clone:ddc24e16, 5' ... 46 7.0 1
(BJ338378) Dictyostelium discoideum cDNA clone:dda61c09, 5' ... 46 7.0 1
(BJ329112) Dictyostelium discoideum cDNA clone:dda30g21, 5' ... 46 7.0 1
(BJ327623) Dictyostelium discoideum cDNA clone:dda21l03, 5' ... 46 7.0 1
(BJ326757) Dictyostelium discoideum cDNA clone:dda17l19, 5' ... 46 7.0 1
(BJ326591) Dictyostelium discoideum cDNA clone:dda17j04, 5' ... 46 7.0 1
(BJ326578) Dictyostelium discoideum cDNA clone:dda17e04, 5' ... 46 7.0 1
(BJ325676) Dictyostelium discoideum cDNA clone:dda1n19, 5' e... 46 7.0 1
(BI548801) 603196909F1 NIH_MGC_95 Homo sapiens cDNA clone IM... 46 7.0 1
(BG772780) 602720956F1 NIH_MGC_97 Homo sapiens cDNA clone IM... 46 7.0 1
(BG772707) 602720856F1 NIH_MGC_97 Homo sapiens cDNA clone IM... 46 7.0 1
(BF843306) PM0-HT1076-151200-001-C04 HT1076 Homo sapiens cDN... 46 7.0 1
(BF822400) MR1-RT0025-061200-005-d05 RT0025 Homo sapiens cDN... 46 7.0 1
(BF366774) RC2-NT0110-060600-014-g02 NT0110 Homo sapiens cDN... 46 7.0 1
(BE156602) QV0-HT0368-090200-099-g04 HT0368 Homo sapiens cDN... 46 7.0 1
(ES676674) CCAX3060.b1 NICHD_XGC_tropEye1 Xenopus (Silurana)... 46 7.0 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 7.2 13
(CN626622) tae97g05.y1 Hydra EST Darmstadt I Hydra magnipapi... 34 7.9 3
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,... 34 8.2 14
(AC022712) Homo sapiens clone RP11-114J13, WORKING DRAFT SEQ... 38 8.4 8
(AC139973) Rattus norvegicus clone CH230-262K17, WORKING DRA... 36 8.7 7
(BJ396664) Dictyostelium discoideum cDNA clone:dds43b14, 5' ... 32 8.7 3
(BJ411680) Dictyostelium discoideum cDNA clone:ddv5j12, 5' e... 42 9.0 2
(AF026212) Caenorhabditis elegans cosmid F52G3, complete seq... 38 9.2 5
(AX347018) Sequence 2089 from Patent WO0200928. 32 9.3 5
(AX344880) Sequence 305 from Patent WO0200927. 32 9.3 5
(BD460484) Diagnosis of Diseases Associated with Cell Cycle. 38 9.5 4
(BD452406) Diagnosis of Diseases Associated with Cell Cycle. 38 9.5 4
(AX348787) Sequence 245 from Patent WO0202807. 38 9.5 4
(AX346468) Sequence 1539 from Patent WO0200928. 38 9.5 4
(AX252020) Sequence 281 from Patent WO0168911. 38 9.5 4
(CT573474) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 9.9 8
(BX000702) Zebrafish DNA sequence from clone CH211-160D19 in... 34 9.9 8
(BJ326287) Dictyostelium discoideum cDNA clone:dda15n06, 5' ... 42 9.9 2

>(BJ344493) Dictyostelium discoideum cDNA clone:dda19c18, 3' end,
single read.
Length = 740

Score = 1316 bits (664), Expect = 0.0
Identities = 664/664 (100%)
Strand = Plus / Minus


Query: 1374 cagcaggtccaaccaaaccaccaactaaattaccattcaaagttttgaaagatgctgatg 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagcaggtccaaccaaaccaccaactaaattaccattcaaagttttgaaagatgctgatg 679


Query: 1434 gcaaagtcactggtgtcaccaaagattttgaaatctatttcgataaattatccgatagta 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcaaagtcactggtgtcaccaaagattttgaaatctatttcgataaattatccgatagta 619


Query: 1494 tcaaaacatatccaggtgaatttgttgaagataatggtttagtagaggagatgactgaag 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcaaaacatatccaggtgaatttgttgaagataatggtttagtagaggagatgactgaag 559


Query: 1554 tcattgataaagcaatcagagatgaatttgttaaagctagagctgttgcccaaaagaaat 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcattgataaagcaatcagagatgaatttgttaaagctagagctgttgcccaaaagaaat 499


Query: 1614 atgatgatttgaaggctgaaatcgattcttactctccaaagaaagctgaagattatgaca 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atgatgatttgaaggctgaaatcgattcttactctccaaagaaagctgaagattatgaca 439


Query: 1674 actgtaaaatctataaattctatccacgtcataaaaaatataatattcaaaaatatgttt 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 actgtaaaatctataaattctatccacgtcataaaaaatataatattcaaaaatatgttt 379


Query: 1734 caccagcagtaaatagattctttggtaatgctacacaaactttcccagatgctcttaaac 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caccagcagtaaatagattctttggtaatgctacacaaactttcccagatgctcttaaac 319


Query: 1794 tctctttaacagaattaaaggaagttgatgctgaccttgttaaaaagattgcagatgaag 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tctctttaacagaattaaaggaagttgatgctgaccttgttaaaaagattgcagatgaag 259


Query: 1854 ataagaaatcatggtcttcaggtattaaaaaatcaaaagaaactcaaattgatgatggtc 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ataagaaatcatggtcttcaggtattaaaaaatcaaaagaaactcaaattgatgatggtc 199


Query: 1914 gttattcagactctgatgaatcttcatctgaagatgaagaatctgaagaagaaccaaaga 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gttattcagactctgatgaatcttcatctgaagatgaagaatctgaagaagaaccaaaga 139


Query: 1974 aagaggttgttaaaagagttgttaaaaaagctgctgctaaaccagctccagttaaaccag 2033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aagaggttgttaaaagagttgttaaaaaagctgctgctaaaccagctccagttaaaccag 79


Query: 2034 ctcc 2037
||||
Sbjct: 78 ctcc 75

Score = 323 bits (163), Expect = 2e-83
Identities = 163/163 (100%)
Strand = Plus / Minus


Query: 874 cagcaggtccaaccaaaccaccaactaaattaccattcaaagttttgaaagatgctgatg 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagcaggtccaaccaaaccaccaactaaattaccattcaaagttttgaaagatgctgatg 679


Query: 934 gcaaagtcactggtgtcaccaaagattttgaaatctatttcgataaattatccgatagta 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcaaagtcactggtgtcaccaaagattttgaaatctatttcgataaattatccgatagta 619


Query: 994 tcaaaacatatccaggtgaatttgttgaagataatggtttagt 1036
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcaaaacatatccaggtgaatttgttgaagataatggtttagt 576

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,652,259,994
Number of extensions: 174437448
Number of successful extensions: 16323218
Number of sequences better than 10.0: 412
Length of query: 2734
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2709
Effective length of database: 96,311,147,814
Effective search space: 260906899428126
Effective search space used: 260906899428126
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U15870-1 (Contig-U15870-1Q) /CSM_Contig/Contig-U15870-1Q.Seq.d
(2734 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P54696) RecName: Full=Myosin-H heavy chain; AltName: Full=Myosi... 536 e-150
EU964873_1(EU964873|pid:none) Zea mays clone 282264 ATP/GTP bind... 72 1e-10
FJ461780_24(FJ461780|pid:none) Arabidopsis arenosa clone AaFLC_B... 69 7e-10
AK070723_1(AK070723|pid:none) Oryza sativa Japonica Group cDNA c... 68 2e-09
AY098525_1(AY098525|pid:none) Ananas comosus putative ATP/GTP bi... 67 3e-09
AC146875_4(AC146875|pid:none) Brassica rapa clone BAC KBrH117M18... 67 3e-09
AP008208_1391(AP008208|pid:none) Oryza sativa (japonica cultivar... 67 3e-09
AB019236_13(AB019236|pid:none) Arabidopsis thaliana genomic DNA,... 64 3e-08
AC155341_6(AC155341|pid:none) Brassica rapa subsp. pekinensis ch... 62 1e-07
EF677507_1(EF677507|pid:none) Picea sitchensis clone WS0276_B21 ... 61 2e-07
AC155342_18(AC155342|pid:none) Brassica rapa subsp. pekinensis c... 59 1e-06
AP005845_11(AP005845|pid:none) Oryza sativa Japonica Group genom... 42 0.12
BT083555_1(BT083555|pid:none) Zea mays full-length cDNA clone ZM... 42 0.12
BC073488_1(BC073488|pid:none) Xenopus laevis MGC81012 protein, m... 41 0.27
CR628337_2363(CR628337|pid:none) Legionella pneumophila str. Len... 39 1.3
CP000675_2594(CP000675|pid:none) Legionella pneumophila str. Cor... 38 1.7
DQ927305_3(DQ927305|pid:none) Tetrahymena pigmentosa strain UM10... 38 1.7
AB360971_3(AB360971|pid:none) Culicoides actoni mitochondrial DN... 38 2.3
AE017354_2386(AE017354|pid:none) Legionella pneumophila subsp. p... 37 3.9
CP001615_2654(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 37 5.0
AE014187_60(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 37 5.1
CP000771_1726(CP000771|pid:none) Fervidobacterium nodosum Rt17-B... 36 8.6

>(P54696) RecName: Full=Myosin-H heavy chain; AltName: Full=Myosin-5a;
Length = 2359

Score = 536 bits (1381), Expect = e-150
Identities = 270/294 (91%), Positives = 270/294 (91%)
Frame = +2

Query: 1037 FHLSWSPYIPSRYSNQASNKKYKIFTLNLQERPGKKISEEKQLNIQYLLPYILIPKIFKT 1216
FHLSWSPYIPSRYSNQASNKKYKIFTLNLQERPGKKISEEKQLNIQYLLPYILIPKIFKT
Sbjct: 1847 FHLSWSPYIPSRYSNQASNKKYKIFTLNLQERPGKKISEEKQLNIQYLLPYILIPKIFKT 1906

Query: 1217 FSVTPITNVQFILKDCKLTKEAGEKLIKERKQEEEAYXXXXXXXXXXXXDEKTAGPTKPP 1396
FSVTPITNVQFILKDCKLTKEAGEKLIKERKQEEEAY DEKTAGPTKPP
Sbjct: 1907 FSVTPITNVQFILKDCKLTKEAGEKLIKERKQEEEAYKKWVEENKGKKKDEKTAGPTKPP 1966

Query: 1397 TKLPFKVLKDADGKVTGVTKDFEIYFDKLSDSIKTYPGEFVEDNGLVEEMTEVIDKAIRD 1576
TKLPFKVLKDADGKVTGVTKDFEIYFDKLSDSIKTYPGEFVEDNGLVEEMTEVIDKAIRD
Sbjct: 1967 TKLPFKVLKDADGKVTGVTKDFEIYFDKLSDSIKTYPGEFVEDNGLVEEMTEVIDKAIRD 2026

Query: 1577 EFVKARAVAQKKYDDLKAEIDSYSPKKAEDYDNCKIYKFYPRHKKYNIQKYVSPAVNRFF 1756
EFVKARAVAQKKYDDLKAEIDSYSPKKAEDYDNCKIYKFYPRHKKYNIQKYVSPAVNRFF
Sbjct: 2027 EFVKARAVAQKKYDDLKAEIDSYSPKKAEDYDNCKIYKFYPRHKKYNIQKYVSPAVNRFF 2086

Query: 1757 GNATQTFPDALKLSLTELKEVDADLVKKIADEDXXXXXXXXXXXXETQIDDGRY 1918
GNATQTFPDALKLSLTELKEVDADLVKKIADED ETQIDDGRY
Sbjct: 2087 GNATQTFPDALKLSLTELKEVDADLVKKIADEDKKSWSSGIKKSKETQIDDGRY 2140

Score = 521 bits (1342), Expect = e-146
Identities = 253/266 (95%), Positives = 254/266 (95%)
Frame = +3

Query: 240 DVDWKELTPIGFEFNTWESMKKEGWTFPELKREFKRGVLSHAQTDKPLYMFLGAQPIVEG 419
D+DWKELTPIGFEFNTWESMKKEGWTFPELKREFKRGVLSHAQTDKPLYMFLGAQPIVEG
Sbjct: 1748 DLDWKELTPIGFEFNTWESMKKEGWTFPELKREFKRGVLSHAQTDKPLYMFLGAQPIVEG 1807

Query: 420 DYAFNMPYIVVFDCPSPPPSKICKASIQGGSEDIYNFSDFHLSWSPYIPSRYSNQASNKK 599
DYAFNMPYIVVFDCPSPPPSKICKASIQGGSEDIYNFSDFHLSWSPYIPSRYSNQASNKK
Sbjct: 1808 DYAFNMPYIVVFDCPSPPPSKICKASIQGGSEDIYNFSDFHLSWSPYIPSRYSNQASNKK 1867

Query: 600 YKIFTLNLQERPGKKISEEKQLNIQYLLPYILIPKIFKTFSVTPITNVQFILKDCKLTKE 779
YKIFTLNLQERPGKKISEEKQLNIQYLLPYILIPKIFKTFSVTPITNVQFILKDCKLTKE
Sbjct: 1868 YKIFTLNLQERPGKKISEEKQLNIQYLLPYILIPKIFKTFSVTPITNVQFILKDCKLTKE 1927

Query: 780 AGEKLIKERKQEEEAYXXXXXXXXXXXXDEKTAGPTKPPTKLPFKVLKDADGKVTGVTKD 959
AGEKLIKERKQEEEAY DEKTAGPTKPPTKLPFKVLKDADGKVTGVTKD
Sbjct: 1928 AGEKLIKERKQEEEAYKKWVEENKGKKKDEKTAGPTKPPTKLPFKVLKDADGKVTGVTKD 1987

Query: 960 FEIYFDKLSDSIKTYPGEFVEDNGLV 1037
FEIYFDKLSDSIKTYPGEFVEDNGLV
Sbjct: 1988 FEIYFDKLSDSIKTYPGEFVEDNGLV 2013

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,821,728,293
Number of extensions: 51130357
Number of successful extensions: 145586
Number of sequences better than 10.0: 22
Number of HSP's gapped: 145461
Number of HSP's successfully gapped: 33
Length of query: 911
Length of database: 1,051,180,864
Length adjustment: 138
Effective length of query: 773
Effective length of database: 604,535,722
Effective search space: 467306113106
Effective search space used: 467306113106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.51 gvh: 0.33 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.53 mip: 0.14
nuc: 0.62 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U15870-1 is nuc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 7
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 10
CH (FL, L) 8
CF (FL, S) 7
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0