Contig-U15845-1
Contig ID Contig-U15845-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15845-1 (Contig-U15845-1Q) /CSM_Contig/Contig-U15845-1Q.Seq.d
GGCTTTATTTTATTTATTTTGCCTTTTAAAATTTTTTTTCCAAATATTTT
GAAATGAAAATATTCTTCCTATTTATAATTTTACTTGGAATTATCCAACT
CTCAAATTCATCTAGTTGCAATATTGATATTGCTGGATATTCATTTGATT
TAACACCTTTAAAGAAAATTGATGGATATCATAAAGTTATTTCAGATTAT
GGAGATATAGTTTATTTTAATTTTTGTAATACAACAATTGATACACCATG
TGGTAATTCTGCCCTTGCATATTTTTTTGATGGCTCAACTGGTGAATGTC
ATTCTTTGGGAGTTCAAGAATTTTATTCATTAAATTCATATGAAGAAAAA
AAGACTTTACTTATTAATATTAGAGGTGGTGATATTGCATATGATTCTAT
GGTTAAAATGCTTGAAATGTTTATAGCTTTTACTTGTGATGAATCAGATG
ATACAAGTGAACCATCATTAATAAACACAATGGAATATGGTTATGCTTCA
GT----------ATGNATAATTTTGAAGNAACTCAAAATCTTGATGGTGA
TTATATNAATCAAGAGAAAATNATTCCAAATATTATAATGGAAGATACTA
AACCAAATGATTTNACTCAAAATTTGTCAATAGACAATGAATTCTAATAA
AAAATTAATAATAATAACGCTAANANATAGTTA

Gap gap included
Contig length 673
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1325867
End point 1326539
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U15845
List of clone(s)

est1=CFG485F,1,331
est2=SSD512F,26,339
est3=SLB554F,31,502
est4=CFG485Z,503,673
Translated Amino Acid sequence
lyfiyfaf*NFFSKYFEMKIFFLFIILLGIIQLSNSSSCNIDIAGYSFDLTPLKKIDGYH
KVISDYGDIVYFNFCNTTIDTPCGNSALAYFFDGSTGECHSLGVQEFYSLNSYEEKKTLL
INIRGGDIAYDSMVKMLEMFIAFTCDESDDTSEPSLINTMEYGYAS---

---MXNFEXTQNLDGDYXNQEKXIPNIIMEDTKPNDXTQNLSIDNEF**kinnnnaxx*l


Translated Amino Acid sequence (All Frames)
Frame A:
gfilfilpfkiffpnilk*kyssyl*fylelsnsqihlvaililldihli*hl*rklmdi
iklfqimei*filifviqqlihhvvilplhiflmaqlvnvilwefknfih*ihmkkkrly
llilevvilhmilwlkclkcl*lllvmnqmiqvnhh**tqwnmvmlq---

---MXNFEXTQNLDGDYXNQEKXIPNIIMEDTKPNDXTQNLSIDNEF**kinnnnaxx*l

Frame B:
alfylfcllkfffqif*nenilpiynftwnyptlkfi*lqy*ycwifi*fntfken*wis
*syfrlwryslf*fl*ynn*ytmw*fcpciff*wlnw*msffgssrilfikfi*rkkdft
y*y*rw*yci*fyg*na*nvysfyl**ir*yk*tiinkhngiwlcfs---

---xiilkxlkilmviixikrkxfqil*wkilnqmixlkicq*tmnsnkkliiitlxxs

Frame C:
lyfiyfaf*NFFSKYFEMKIFFLFIILLGIIQLSNSSSCNIDIAGYSFDLTPLKKIDGYH
KVISDYGDIVYFNFCNTTIDTPCGNSALAYFFDGSTGECHSLGVQEFYSLNSYEEKKTLL
INIRGGDIAYDSMVKMLEMFIAFTCDESDDTSEPSLINTMEYGYAS---

---x*f*xnsks*w*lyxsrenxskyyngry*tk*fxskfvnrq*ilikn****r*xiv

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15845-1 (Contig-U15845-1Q)
/CSM_Contig/Contig-U15845-1Q.Seq.d
(683 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15845-1 (Contig-U15845-1Q) /CSM_Contig/Conti... 1092 0.0
Contig-U12260-1 (Contig-U12260-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U15846-1 (Contig-U15846-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U15822-1 (Contig-U15822-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U15655-1 (Contig-U15655-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U14404-1 (Contig-U14404-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U12229-1 (Contig-U12229-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U12148-1 (Contig-U12148-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U11123-1 (Contig-U11123-1Q) /CSM_Contig/Conti... 38 0.017

>Contig-U15845-1 (Contig-U15845-1Q) /CSM_Contig/Contig-U15845-1Q.Seq.d
Length = 683

Score = 1092 bits (551), Expect = 0.0
Identities = 630/644 (97%)
Strand = Plus / Plus


Query: 40 ccaaatattttgaaatgaaaatattcttcctatttataattttacttggaattatccaac 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 ccaaatattttgaaatgaaaatattcttcctatttataattttacttggaattatccaac 99


Query: 100 tctcaaattcatctagttgcaatattgatattgctggatattcatttgatttaacacctt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tctcaaattcatctagttgcaatattgatattgctggatattcatttgatttaacacctt 159


Query: 160 taaagaaaattgatggatatcataaagttatttcagattatggagatatagtttatttta 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 taaagaaaattgatggatatcataaagttatttcagattatggagatatagtttatttta 219


Query: 220 atttttgtaatacaacaattgatacaccatgtggtaattctgcccttgcatannnnnnng 279
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 220 atttttgtaatacaacaattgatacaccatgtggtaattctgcccttgcatatttttttg 279


Query: 280 atggctcaactggtgaatgtcattctttgggagttcaagaattttattcattaaattcat 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atggctcaactggtgaatgtcattctttgggagttcaagaattttattcattaaattcat 339


Query: 340 atgaagnnnnnnngactttacttattaatattagaggtggtgatattgcatatgattcta 399
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atgaagaaaaaaagactttacttattaatattagaggtggtgatattgcatatgattcta 399


Query: 400 tggttaaaatgcttgaaatgtttatagcttttacttgtgatgaatcagatgatacaagtg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tggttaaaatgcttgaaatgtttatagcttttacttgtgatgaatcagatgatacaagtg 459


Query: 460 aaccatcattaataaacacaatggaatatggttatgcttcagtnnnnnnnnnnatgnata 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaccatcattaataaacacaatggaatatggttatgcttcagtnnnnnnnnnnatgnata 519


Query: 520 attttgaagnaactcaaaatcttgatggtgattatatnaatcaagagaaaatnattccaa 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attttgaagnaactcaaaatcttgatggtgattatatnaatcaagagaaaatnattccaa 579


Query: 580 atattataatggaagatactaaaccaaatgatttnactcaaaatttgtcaatagacaatg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atattataatggaagatactaaaccaaatgatttnactcaaaatttgtcaatagacaatg 639


Query: 640 aattctaataaaaaattaataataataacgctaananatagtta 683
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aattctaataaaaaattaataataataacgctaananatagtta 683


>Contig-U12260-1 (Contig-U12260-1Q) /CSM_Contig/Contig-U12260-1Q.Seq.d
Length = 1262

Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 645 taataaaaaattaataataa 664
||||||||||||||||||||
Sbjct: 1130 taataaaaaattaataataa 1149


>Contig-U15846-1 (Contig-U15846-1Q) /CSM_Contig/Contig-U15846-1Q.Seq.d
Length = 1849

Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 649 aaaaaattaataataataa 667
|||||||||||||||||||
Sbjct: 1744 aaaaaattaataataataa 1762


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,743
Number of Sequences: 8402
Number of extensions: 32743
Number of successful extensions: 3654
Number of sequences better than 10.0: 605
length of query: 683
length of database: 8,075,542
effective HSP length: 16
effective length of query: 667
effective length of database: 7,941,110
effective search space: 5296720370
effective search space used: 5296720370
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 2.21
Homology vs DNA
Query= Contig-U15845-1 (Contig-U15845-1Q) /CSM_Contig/Contig-U15845-1Q.Seq.d
(683 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060805) Dictyostelium discoideum slug cDNA, clone SLB554. 438 0.0 3
(BJ359318) Dictyostelium discoideum cDNA clone:ddc13j22, 5' ... 438 e-144 2
(AU072144) Dictyostelium discoideum slug cDNA, clone SSD512. 426 e-115 1
(BJ372731) Dictyostelium discoideum cDNA clone:ddc13j22, 3' ... 297 3e-76 1
(AU037349) Dictyostelium discoideum slug cDNA, clone SSD512. 252 1e-62 1
(AU033876) Dictyostelium discoideum slug cDNA, clone SLB554. 176 7e-40 1
(AC166004) Colobus guereza clone CH272-101D16, WORKING DRAFT... 44 0.017 2
(DQ102703) Coreana raphaelis mitochondrion, complete genome. 42 0.032 3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 0.050 8
(BX323588) Zebrafish DNA sequence from clone DKEY-225F23 in ... 44 0.096 3
(AC170670) Bos taurus clone CH240-228K16, WORKING DRAFT SEQU... 36 0.11 6
(BX571956) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.11 5
(AC157542) Mus musculus chromosome 1, clone RP23-115I1, comp... 50 0.11 1
(AC102324) Mus musculus chromosome 1, clone RP24-476A18, com... 50 0.11 1
(AC165582) Bos taurus clone CH240-169E14, WORKING DRAFT SEQU... 50 0.11 1
(ES610758) m36a05 American mink brain Neovison vison cDNA cl... 50 0.11 1
(CT573478) Zebrafish DNA sequence from clone CH211-83A12 in ... 42 0.14 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.15 11
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.17 7
(BX571979) Zebrafish DNA sequence from clone DKEYP-51C11 in ... 38 0.23 4
(CU468240) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.25 3
(ER550500) 1093016220352 Global-Ocean-Sampling_GS-35-01-01-1... 38 0.26 2
(EK032339) 1092956080913 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.32 2
(BX005169) Zebrafish DNA sequence from clone CH211-81D10 in ... 42 0.32 6
(EK009432) 1092955150708 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.32 2
(EK205712) 1095460073175 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.32 2
(BX927228) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.35 4
(AC221587) Bos taurus clone CH240-391M15, WORKING DRAFT SEQU... 40 0.40 5
(AP009410) Solanum lycopersicum genomic DNA, chromosome 8, c... 48 0.43 1
(AL592205) Human DNA sequence from clone RP11-184D20 on chro... 48 0.43 1
(AL590107) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.43 1
(AC024432) Homo sapiens chromosome 1 clone RP11-93D16 map 1,... 48 0.43 1
(EJ082086) 1095460050722 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.43 1
(DU910379) 332069 Tomato EcoRI BAC Library Solanum lycopersi... 48 0.43 1
(CZ447791) MCF727j05TR Human MCF7 breast cancer cell line li... 48 0.43 1
(CW101044) 104_468_11004427_116_34398_070 Sorghum methylatio... 36 0.50 3
(CW133580) 104_517_11116838_148_34815_057 Sorghum methylatio... 36 0.50 3
(X05107) Yeast (S. pombe) CDC17 gene for DNA ligase (EC 6.5.... 34 0.51 3
(AC188114) Pongo abelii chromosome UNK clone CH276-85H12, co... 34 0.57 8
(AC221279) Bos taurus clone CH240-402D5, WORKING DRAFT SEQUE... 40 0.70 5
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.78 15
(AC230483) Bos taurus clone CH240-507P10, WORKING DRAFT SEQU... 40 0.82 4
(BX927310) Zebrafish DNA sequence from clone DKEY-154B15 in ... 46 0.83 3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 1.00 8
(AC096422) Rattus norvegicus clone CH230-28B9, *** SEQUENCIN... 44 1.1 3
(AM450322) Vitis vinifera contig VV78X217880.5, whole genome... 40 1.1 2
(AC162107) Bos taurus clone CH240-107P14, WORKING DRAFT SEQU... 34 1.1 7
(CU915512) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 1.1 5
(ER646426) SB_BBc210-K09.F SB_BBc Sorghum bicolor genomic 5'... 36 1.2 3
(CU606894) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.2 6
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 36 1.3 5
(CR394541) Zebrafish DNA sequence from clone DKEY-51M5 in li... 38 1.4 3
(ER635142) SB_BBc162-G08.R SB_BBc Sorghum bicolor genomic 3'... 36 1.6 3
(BP067227) Lotus japonicus cDNA, clone:GENLf089g07, 3' end. 40 1.7 2
(CU571314) Zebrafish DNA sequence from clone CH1073-57D13 in... 46 1.7 1
(CR388080) Zebrafish DNA sequence from clone CH211-174H4 in ... 46 1.7 1
(CR339060) Zebrafish DNA sequence from clone DKEY-276H21 in ... 46 1.7 1
(BX548053) Zebrafish DNA sequence from clone DKEY-189G17 in ... 46 1.7 1
(BX530091) Zebrafish DNA sequence from clone DKEYP-92C9 in l... 46 1.7 1
(BV522725) G591P67014RF5.T0 Clint Pan troglodytes verus STS ... 46 1.7 1
(AC114010) Mus musculus BAC clone RP24-378K23 from chromosom... 46 1.7 1
(BS000085) Pan troglodytes chromosome 22 clone:RP43-164H01, ... 46 1.7 1
(BS000084) Pan troglodytes chromosome 22 clone:RP43-100I03, ... 46 1.7 1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.7 1
(AP005428) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.7 1
(AM472504) Vitis vinifera, whole genome shotgun sequence, co... 46 1.7 1
(AC202363) Medicago truncatula clone mth2-64j15, complete se... 46 1.7 1
(AC165439) Medicago truncatula clone mth2-146b13, complete s... 46 1.7 1
(EA487290) Sequence 1737 from patent US 7348410. 46 1.7 1
(DD175427) FLEA HEAD, NERVE CORD, HINDGUT AND MALPIGHIAN TUB... 46 1.7 1
(DD175221) FLEA HEAD, NERVE CORD, HINDGUT AND MALPIGHIAN TUB... 46 1.7 1
(CS432816) Sequence 1737 from Patent EP1710252. 46 1.7 1
(BD283287) Flea head, nerve cord, hindgut and malpighian tub... 46 1.7 1
(AP001686) Homo sapiens genomic DNA, chromosome 21q, section... 46 1.7 1
(AP000949) Homo sapiens genomic DNA, chromosome 21q21.1-q21.... 46 1.7 1
(AL034561) Human DNA sequence from clone RP4-692C8 on chromo... 46 1.7 1
(AC135943) Rattus norvegicus clone CH230-251E6, *** SEQUENCI... 46 1.7 1
(AC122980) Rattus norvegicus clone CH230-342B13, *** SEQUENC... 46 1.7 1
(AC121043) Rattus norvegicus clone CH230-121F11, *** SEQUENC... 46 1.7 1
(AC095871) Rattus norvegicus clone CH230-10I4, *** SEQUENCIN... 46 1.7 1
(CU571063) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.7 1
(CU467531) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.7 1
(AC204383) Zea mays chromosome 4 clone CH201-541N1; ZMMBBc05... 46 1.7 1
(AC185667) Zea mays chromosome 4 clone CH201-131B19; ZMMBBc0... 46 1.7 1
(AC018937) Homo sapiens clone RP11-20B6, *** SEQUENCING IN P... 46 1.7 1
(AZ960237) 2M0228P09F Mouse 10kb plasmid UUGC2M library Mus ... 46 1.7 1
(EK338609) 1095467051973 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.7 1
(EI787255) CHORI518012C10TF BAC library from the breast cell... 46 1.7 1
(DE344108) Bombyx mori genomic DNA, BAC clone:BET_045_A19. 46 1.7 1
(DE286605) Bombyx mori genomic DNA, BAC clone:BES_010_C11. 46 1.7 1
(CU791854) A BAC library has been constructed from PN40024 g... 46 1.7 1
(CL433193) ZMMBBb0447H03r ZMMBBb (HindIII) Zea mays subsp. m... 46 1.7 1
(CE052278) tigr-gss-dog-17000358213919 Dog Library Canis lup... 46 1.7 1
(ES568069) TPAF-aab09c06.g1 T.spiralis_EST Trichinella spira... 46 1.7 1
(ES564883) TPAF-aab58f11.g1 T.spiralis_EST Trichinella spira... 46 1.7 1
(ES560552) TPAF-aab49c06.g1 T.spiralis_EST Trichinella spira... 46 1.7 1
(CX591863) TTE00020260 Amplicon Express - Conjugative Form T... 46 1.7 1
(CT858185) Oryza sativa Indica Group EST sequence:OSIGCRA206... 46 1.7 1
(BM059530) 2256-23 hindgut and Malpighian tubule cDNA librar... 46 1.7 1
(BF779692) 3232-63 hindgut and Malpighian tubule cDNA librar... 46 1.7 1
(EX500391) TPAF-aac39e12.g1 T.spiralis_EST Trichinella spira... 46 1.7 1
(EX500284) TPAF-aac32c05.g1 T.spiralis_EST Trichinella spira... 46 1.7 1
(AC158019) Bos taurus clone CH240-154J18, WORKING DRAFT SEQU... 40 1.8 4
(AP010188) Lotus japonicus genomic DNA, chromosome 4, clone:... 40 1.9 4
(CR790366) Zebrafish DNA sequence from clone DKEY-245M3 in l... 38 2.0 4
(AC145503) Canis lupus familiaris clone RP81-220C18, WORKING... 38 2.0 4
(AC153740) Colobus guereza clone CH272-157M1, complete seque... 38 2.1 6
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 42 2.1 15
(BH161851) ENTSX59TF Entamoeba histolytica Sheared DNA Entam... 34 2.2 3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 2.2 9
(AF367366) Mesembryanthemum crystallinum putative potassium-... 38 2.2 2
(CU459097) Zebrafish DNA sequence from clone CH73-266A4 in l... 38 2.2 3
(AC123645) Mus musculus chromosome 15, clone RP23-99N19, com... 40 2.3 7
(AC167774) Bos taurus clone CH240-115E20, WORKING DRAFT SEQU... 36 2.5 7
(GE638915) AKLLL3DFT3-2-D03 UI95AK-LlL3 Loa loa cDNA, mRNA s... 40 2.5 2
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1... 30 2.6 10
(AL035469) Human DNA sequence from clone RP1-46B1 on chromos... 34 2.8 7
(AM459591) Vitis vinifera contig VV78X002909.9, whole genome... 38 2.8 2
(CR931784) Zebrafish DNA sequence from clone DKEY-237H12 in ... 42 3.1 6
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 3.1 4
(AC069454) Homo sapiens chromosome 17, clone RP11-708H21, co... 38 3.1 3
(FF301112) 279339936 Pea aphid whole body normalized full le... 34 3.1 2
(AC023859) Homo sapiens clone RP11-561J21, WORKING DRAFT SEQ... 34 3.3 2
(AL355839) Human chromosome 14 DNA sequence BAC R-243J8 of l... 34 3.3 2
(CU929892) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.3 2
(AC159224) Mus musculus chromosome 8, clone RP24-180O7, comp... 34 3.4 6
(EX631177) 255495068 Pea aphid whole body normalized full le... 34 3.6 2
(FI200387) CccaBa032-H6TV CccABa Cajanus cajan genomic clone... 34 3.7 2
(CG960614) MBEBC22TFB mth2 Medicago truncatula genomic clone... 34 3.9 2
(CU062406) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.1 8
(CT339486) Sus scrofa genomic clone CH242-311J2, genomic sur... 34 4.4 2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 4.4 6
(EJ300342) 1095390007863 Global-Ocean-Sampling_GS-27-01-01-1... 32 4.9 3
(EJ811419) 1093017491572 Global-Ocean-Sampling_GS-30-02-01-1... 30 4.9 3
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 5.1 8
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 5.1 8
(AC212894) MACACA MULATTA BAC clone CH250-6J16 from chromoso... 34 5.1 6
(AC232064) Solanum tuberosum strain Diploid genotype RH89-03... 42 5.2 3
(EK292456) 1095462335342 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.2 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 5.4 9
(AL035475) Plasmodium falciparum MAL4P2. 38 5.5 7
(AC133223) Rattus norvegicus clone CH230-26K13, *** SEQUENCI... 38 5.7 6
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 5.9 10
(DD061341) Methods and nucleic acids for the analysis of he... 36 6.0 3
(AX598903) Sequence 243 from Patent WO02077272. 36 6.0 3
(AC079324) Homo sapiens chromosome 11 clone RP11-151L4 map 1... 38 6.2 5
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 34 6.5 11
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 6.5 10
(CT573049) Zebrafish DNA sequence from clone CH211-18H22 in ... 42 6.6 2
(AX347098) Sequence 2169 from Patent WO0200928. 40 6.6 3
(AL845537) Zebrafish DNA sequence from clone IZAB-12K13 in l... 38 6.6 3
(AC119408) Medicago truncatula chromosome 8 clone mth2-5f18,... 34 6.6 5
(AM475782) Vitis vinifera contig VV78X149137.9, whole genome... 36 6.7 2
(CR762470) Zebrafish DNA sequence from clone DKEY-12N16 in l... 44 6.7 1
(CR752646) Zebrafish DNA sequence from clone DKEY-76F6 in li... 44 6.7 1
(CR385035) Zebrafish DNA sequence from clone DKEY-182I1 in l... 44 6.7 1
(BX649300) Zebrafish DNA sequence from clone CH211-195I16 in... 44 6.7 1
(BX569781) Zebrafish DNA sequence from clone DKEY-72L18 in l... 44 6.7 1
(CT030146) Mouse DNA sequence from clone RP24-150F7 on chrom... 44 6.7 1
(AC166341) Mus musculus BAC clone RP23-430C21 from chromosom... 44 6.7 1
(AC164603) Mus musculus chromosome 8, clone RP24-114E3, comp... 44 6.7 1
(AC163041) Mus musculus BAC clone RP23-32K16 from chromosome... 44 6.7 1
(AC153663) Mus musculus BAC clone RP23-12J8 from chromosome ... 44 6.7 1
(AC134601) Mus musculus BAC clone RP23-242M10 from 12, compl... 44 6.7 1
(AC134254) Mus musculus BAC clone RP23-474M18 from 12, compl... 44 6.7 1
(AC124772) Mus musculus BAC clone RP23-47P3 from 12, complet... 44 6.7 1
(AC124739) Mus musculus BAC clone RP23-344H4 from chromosome... 44 6.7 1
(AC124601) Mus musculus BAC clone RP23-27M3 from chromosome ... 44 6.7 1
(AC124530) Mus musculus BAC clone RP23-286D7 from chromosome... 44 6.7 1
(AC122880) Mus musculus BAC clone RP23-77F18 from 8, complet... 44 6.7 1
(AC122850) Mus musculus BAC clone RP23-167J19 from 10, compl... 44 6.7 1
(AC122351) Mus musculus BAC clone RP23-388H1 from 12, comple... 44 6.7 1
(AC197412) Rhesus Macaque BAC CH250-400J16 () complete sequ... 44 6.7 1
(AY908017) Notoligotrichum australe isolate MDP185 small rib... 44 6.7 1
(AP009068) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 6.7 1
(AM485502) Vitis vinifera, whole genome shotgun sequence, co... 44 6.7 1
(AM483883) Vitis vinifera contig VV78X110269.4, whole genome... 44 6.7 1
(AM480766) Vitis vinifera contig VV78X247958.36, whole genom... 44 6.7 1
(AM449708) Vitis vinifera contig VV78X098896.3, whole genome... 44 6.7 1
(AM437243) Vitis vinifera contig VV78X069574.5, whole genome... 44 6.7 1
(AC212437) Solanum lycopersicum chromosome 11 clone C11HBa01... 44 6.7 1
(AC185959) Glycine max clone gmw1-58k3, complete sequence. 44 6.7 1
(AC147007) Medicago truncatula clone mth2-26c3, complete seq... 44 6.7 1
(AX346176) Sequence 1247 from Patent WO0200928. 44 6.7 1
(DQ492251) Leishmania mexicana strain MHOM/??/1994/BEHA maxi... 44 6.7 1
(AF482963) Dictyostelium discoideum arsenite transport subun... 44 6.7 1
(AB284570) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284568) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284567) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284565) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284564) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284563) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284562) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284561) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284560) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284558) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284557) Polistes formosanus gene for 16S rRNA, partial se... 44 6.7 1
(AB284556) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284554) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284553) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284551) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284550) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284549) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284548) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284547) Polistes japonicus gene for 16S rRNA, partial seq... 44 6.7 1
(AB284543) Polistes nipponensis gene for 16S rRNA, partial s... 44 6.7 1
(AB284540) Polistes rothneyi gene for 16S rRNA, partial sequ... 44 6.7 1
(AB284538) Polistes riparius gene for 16S rRNA, partial sequ... 44 6.7 1
(AB284537) Polistes chinensis gene for 16S rRNA, partial seq... 44 6.7 1
(AB093146) Neocalanus tonsus mitochondrial srRNA, ND6, COI, ... 44 6.7 1
(AL606527) Human DNA sequence from clone RP11-454G24 on chro... 44 6.7 1
(AL445228) Human DNA sequence from clone RP11-382D12 on chro... 44 6.7 1
(AL391241) Human DNA sequence from clone RP13-158L7 on chrom... 44 6.7 1
(AL161784) Human DNA sequence from clone RP11-342H3 on chrom... 44 6.7 1
(AC122688) Homo sapiens 12 BAC RP11-158L12 (Roswell Park Can... 44 6.7 1
(AC105383) Homo sapiens BAC clone RP11-9G1 from 4, complete ... 44 6.7 1
(AC093431) Homo sapiens chromosome 1 clone RP11-574N2, compl... 44 6.7 1
(AC092068) Homo sapiens chromosome 19 clone CTC-265F19, comp... 44 6.7 1
(AC012464) Homo sapiens 12 BAC RP11-1060G2 (Roswell Park Can... 44 6.7 1
(AC006275) Homo sapiens chromosome 19, cosmid R32203, comple... 44 6.7 1
(AC156786) Rhinolophus ferrumequinum clone VMRC7-49F13, WORK... 44 6.7 1
(AC151003) Bos taurus clone CH240-161J10, WORKING DRAFT SEQU... 44 6.7 1
(AC150917) Bos taurus clone CH240-430L1, WORKING DRAFT SEQUE... 44 6.7 1
(AC150662) Bos taurus clone CH240-285G3, WORKING DRAFT SEQUE... 44 6.7 1
(AC128007) Rattus norvegicus clone CH230-250A8, *** SEQUENCI... 44 6.7 1
(AC127600) Homo sapiens, *** SEQUENCING IN PROGRESS ***, 36 ... 44 6.7 1
(AC115534) Sus scrofa clone RP44-500O24, WORKING DRAFT SEQUE... 44 6.7 1
(AC099873) Mus musculus clone RP23-8L2, LOW-PASS SEQUENCE SA... 44 6.7 1
(CU929940) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CU695168) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CU633666) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CU582892) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(AC090504) Homo sapiens chromosome 12q clone RP11-570M8, WOR... 44 6.7 1
(AC026084) Homo sapiens chromosome X clone RP11-477A22, WORK... 44 6.7 1
(CU074410) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CR855129) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.7 1
(CR788315) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 6.7 1
(CR735108) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 6.7 1
(BX511194) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 6.7 1
(AP007884) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 6.7 1
(AL353755) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 6.7 1
(AC231175) Bos taurus clone CH240-85N4, WORKING DRAFT SEQUEN... 44 6.7 1
(AC230818) Bos taurus clone CH240-498H14, WORKING DRAFT SEQU... 44 6.7 1
(AC230813) Bos taurus clone CH240-498F23, WORKING DRAFT SEQU... 44 6.7 1
(AC224237) Bos taurus clone CH240-446E3, WORKING DRAFT SEQUE... 44 6.7 1
(AC214053) Mus musculus chromosome 12 clone RP23-360K12, WOR... 44 6.7 1
(AC197037) Zea mays chromosome 5 clone CH201-561M23; ZMMBBc0... 44 6.7 1
(AC194497) Microcebus murinus clone CH257-266B21, WORKING DR... 44 6.7 1
(AC190348) Microcebus murinus clone CH257-308D20, WORKING DR... 44 6.7 1
(AC190099) Rhinolophus ferrumequinum clone VMRC7-389M18, WOR... 44 6.7 1
(AC181809) Strongylocentrotus purpuratus clone R3-1024G24, W... 44 6.7 1
(AC177074) Strongylocentrotus purpuratus clone R3-4004K19, W... 44 6.7 1
(AC176746) Strongylocentrotus purpuratus clone R3-3097F6, WO... 44 6.7 1
(AC170888) Mus musculus chromosome 12 clone RP24-72M20, WORK... 44 6.7 1
(AC023589) Homo sapiens chromosome 12 clone RP11-570M8 map 1... 44 6.7 1
(AZ639832) 1M0501H04R Mouse 10kb plasmid UUGC1M library Mus ... 44 6.7 1
(FH256253) CHO_OF3229xe20r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.7 1
(FH118293) CHO_OF3256xb03r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.7 1
(ET699976) CHO_OF392xf20r1.ab1 CHO_OF Nicotiana tabacum geno... 44 6.7 1
(ER627313) 1093018289333 Global-Ocean-Sampling_GS-36-01-01-2... 44 6.7 1
(EK396772) 1095469524280 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.7 1
(EK354881) 1095468473156 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.7 1
(EK128377) 1092996501322 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.7 1
(EJ757426) 1092963094671 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.7 1
(EJ753856) 1092963059215 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.7 1
(EJ552190) 1092959461544 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.7 1
(EJ262678) 1095349051971 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.7 1
(ED653136) GM_WBa0070F23.f GM_WBa Glycine max genomic clone ... 44 6.7 1
(DU913147) 329863 Tomato EcoRI BAC Library Solanum lycopersi... 44 6.7 1
(DH256451) Oryzias latipes Fosmid clone:GOLWFno577_m20, forw... 44 6.7 1
(CW957014) TcB51.4_G06_SP6 Tribolium BAC library Tribolium c... 44 6.7 1
(CU856931) A BAC library has been constructed from PN40024 g... 44 6.7 1
(CT319884) Sus scrofa genomic clone CH242-320L7, genomic sur... 44 6.7 1
(CR865966) Sus scrofa BES. 44 6.7 1
(CL492911) SAIL_571_C05.v1 SAIL Collection Arabidopsis thali... 44 6.7 1
(CG005454) ZUAFN33TH ZM_3.0_4.0_KB Zea mays genomic clone ZM... 44 6.7 1
(CE652053) tigr-gss-dog-17000367925710 Dog Library Canis lup... 44 6.7 1
(BH843761) TC3-56M13.TP TC3 Trypanosoma cruzi genomic clone ... 44 6.7 1
(AG105413) Pan troglodytes DNA, clone: PTB-109J23.F. 44 6.7 1
(EL464361) CHTS2921.b2_A12.ab1 CHT(LMS) Jerusalem artichoke ... 44 6.7 1
(EH192685) EC04_d_1326 EC04 Eragrostis curvula cDNA, mRNA se... 44 6.7 1
(EH185642) EC01_d_3355 EC01 Eragrostis curvula cDNA, mRNA se... 44 6.7 1
(EH185609) EC01_d_3321 EC01 Eragrostis curvula cDNA, mRNA se... 44 6.7 1
(EG546129) RrLX1a24f24f1 1YR+I Rutilus rutilus cDNA clone 24... 44 6.7 1
(EG455032) AYAZO39TR pooled cDNA populations Arabidopsis tha... 44 6.7 1
(DW948689) MSAM231611_3141_2355 LCM-dissected maize shoot ap... 44 6.7 1
(DT279633) JGI_CAAV8756.rev CAAV Pimephales promelas testis ... 44 6.7 1
(CN560372) tag32c12.x1 Hydra EST -Kiel 2 Hydra magnipapillat... 44 6.7 1
(BG499306) 602545771F1 NIH_MGC_60 Homo sapiens cDNA clone IM... 44 6.7 1
(GE570320) CCHT4859.b1_E16.ab1 CCHT Niger Seed Guizotia abys... 44 6.7 1
(EY069064) CATG2116.rev CATG Artemisia annua, Tanzanian, fro... 44 6.7 1
(EX727696) ZNGAA_2760.abd Gadus morhua pooled gill samples l... 44 6.7 1
(EX639320) 256627224 Pea aphid whole body normalized full le... 44 6.7 1
(AA019542) ze55d01.s1 Soares retina N2b4HR Homo sapiens cDNA... 44 6.7 1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 44 6.7 1
(CR956428) Pig DNA sequence from clone PigE-259M5 on chromos... 38 6.8 3
(BX927386) Zebrafish DNA sequence from clone CH211-54F10 in ... 38 6.9 3
(AC188805) Gallus gallus BAC clone TAM31-17M13 from chromoso... 34 6.9 5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 7.0 13
(AM434804) Vitis vinifera contig VV78X033615.9, whole genome... 34 7.3 5
(AC159102) Mus musculus BAC clone RP24-144C11 from chromosom... 38 7.5 3
(AL356019) Human chromosome 14 DNA sequence BAC C-2292M16 of... 40 7.5 3
(CU914743) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 7.7 5
(AM448088) Vitis vinifera contig VV78X095225.13, whole genom... 36 7.8 3
(AC171658) Bos taurus clone CH240-300B21, WORKING DRAFT SEQU... 38 7.9 3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 8.2 10
(AF008210) Buchnera aphidicola genomic fragment containing (... 42 8.2 2
(AC142541) Homo sapiens chromosome 16 clone RP11-702C12, WOR... 38 8.4 6
(DD061195) Methods and nucleic acids for the analysis of he... 36 8.4 2
(AX598757) Sequence 97 from Patent WO02077272. 36 8.4 2
(AF373219) Plasmodium falciparum origin recognition complex ... 34 8.9 3
(AC095058) Homo sapiens BAC clone RP11-416A5 from 4, complet... 38 8.9 4
(AC128090) Rattus norvegicus clone CH230-318P3, WORKING DRAF... 36 9.4 4
(AC011911) Drosophila melanogaster 3L BAC RP98-48J5 (Roswell... 38 9.6 4
(AC095387) Rattus norvegicus clone CH230-6O16, *** SEQUENCIN... 36 9.8 5
(AX346032) Sequence 1103 from Patent WO0200928. 36 9.9 3
(AM452760) Vitis vinifera, whole genome shotgun sequence, co... 36 9.9 2
(BX294661) Zebrafish DNA sequence from clone CH211-199I18 in... 40 10.0 5

>(AU060805) Dictyostelium discoideum slug cDNA, clone SLB554.
Length = 472

Score = 438 bits (221), Expect(3) = 0.0
Identities = 221/221 (100%)
Strand = Plus / Plus


Query: 51 gaaatgaaaatattcttcctatttataattttacttggaattatccaactctcaaattca 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 gaaatgaaaatattcttcctatttataattttacttggaattatccaactctcaaattca 80


Query: 111 tctagttgcaatattgatattgctggatattcatttgatttaacacctttaaagaaaatt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tctagttgcaatattgatattgctggatattcatttgatttaacacctttaaagaaaatt 140


Query: 171 gatggatatcataaagttatttcagattatggagatatagtttattttaatttttgtaat 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gatggatatcataaagttatttcagattatggagatatagtttattttaatttttgtaat 200


Query: 231 acaacaattgatacaccatgtggtaattctgcccttgcata 271
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaacaattgatacaccatgtggtaattctgcccttgcata 241

Score = 297 bits (150), Expect(3) = 0.0
Identities = 150/150 (100%)
Strand = Plus / Plus


Query: 353 gactttacttattaatattagaggtggtgatattgcatatgattctatggttaaaatgct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gactttacttattaatattagaggtggtgatattgcatatgattctatggttaaaatgct 382


Query: 413 tgaaatgtttatagcttttacttgtgatgaatcagatgatacaagtgaaccatcattaat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaaatgtttatagcttttacttgtgatgaatcagatgatacaagtgaaccatcattaat 442


Query: 473 aaacacaatggaatatggttatgcttcagt 502
||||||||||||||||||||||||||||||
Sbjct: 443 aaacacaatggaatatggttatgcttcagt 472

Score = 133 bits (67), Expect(3) = 0.0
Identities = 67/67 (100%)
Strand = Plus / Plus


Query: 279 gatggctcaactggtgaatgtcattctttgggagttcaagaattttattcattaaattca 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gatggctcaactggtgaatgtcattctttgggagttcaagaattttattcattaaattca 308


Query: 339 tatgaag 345
|||||||
Sbjct: 309 tatgaag 315

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 825,149,659
Number of extensions: 61457980
Number of successful extensions: 5330781
Number of sequences better than 10.0: 321
Length of query: 683
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 659
Effective length of database: 96,409,374,237
Effective search space: 63533777622183
Effective search space used: 63533777622183
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U15845-1 (Contig-U15845-1Q) /CSM_Contig/Contig-U15845-1Q.Seq.d
(683 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AF339162_1(AF339162|pid:none) Erinaceus europaeus mannose-6-phos... 44 0.006
AF109291_1(AF109291|pid:none) Homo sapiens insulin-like growth f... 40 0.086
AF069333_1(AF069333|pid:none) Homo sapiens insulin-like growth f... 40 0.086
A28372(A28372;I37623;S58278)insulin-like growth factor 2 recepto... 40 0.086
J03528_1(J03528|pid:none) Human cation-independent mannose 6-pho... 40 0.086
AB209668_1(AB209668|pid:none) Homo sapiens mRNA for Insulin-like... 40 0.086
AF339157_1(AF339157|pid:none) Myotis lucifugus mannose-6-phospha... 39 0.15
CR382129_351(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 39 0.19
AL929119_2(AL929119|pid:none) Zebrafish DNA sequence from clone ... 37 0.42
CU633867_21(CU633867|pid:none) Podospora anserina genomic DNA ch... 37 0.55
AF339159_1(AF339159|pid:none) Macropus rufogriseus mannose-6-pho... 36 0.95
AF342813_1(AF342813|pid:none) Didelphis virginiana mannose-6-pho... 36 0.95
I50726(I50726) cation-independent mannose-6-phosphate receptor -... 35 1.6
AF339158_1(AF339158|pid:none) Oryctolagus cuniculus mannose-6-ph... 35 2.1
BA000011_1094(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 34 3.6
AJ278449_1(AJ278449|pid:none) Xiphophorus maculatus x Xiphophoru... 34 4.7

>AF339162_1(AF339162|pid:none) Erinaceus europaeus
mannose-6-phosphate/insulin-like growth factor II
receptor (m6p/igf2r) mRNA, partial cds.
Length = 2328

Score = 43.5 bits (101), Expect = 0.006
Identities = 33/111 (29%), Positives = 48/111 (43%)
Frame = +3

Query: 132 AGYSFDLTPLKKIDGYHKVISDYGDIVYFNFCNTTIDTPCGNSALAYFFDGSTGECHSLG 311
AG+SFDLT L K GY+KV+++ D Y N C C + A G+ SLG
Sbjct: 581 AGFSFDLTALSKSRGYYKVVTEKHDF-YINVCEPVTIGGCPPGSGACQVSKRDGKVWSLG 639

Query: 312 VQEFYSLNSYEEKKTLLINIRGGDIAYDSMVKMLEMFIAFTCDESDDTSEP 464
+ L+ Y+ + ++ RGG + I F CD + P
Sbjct: 640 MSS-GKLSYYD--GMIQLSYRGGSPYNSQRHTLRATLITFLCDRNAGVGFP 687

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 846,127,480
Number of extensions: 14863662
Number of successful extensions: 32822
Number of sequences better than 10.0: 16
Number of HSP's gapped: 32815
Number of HSP's successfully gapped: 17
Length of query: 227
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 103
Effective length of database: 649,847,548
Effective search space: 66934297444
Effective search space used: 66934297444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 1.02 gvh: 0.73 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: extracellular, including cell wall
12.0 %: endoplasmic reticulum
8.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: vacuolar
8.0 %: nuclear

>> prediction for Contig-U15845-1 is exc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0