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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03173-1
Contig ID Contig-U03173-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03173-1 (Contig-U03173-1Q) /CSM_Contig/Contig-U03173-1Q.Seq.d
AAGGTGGTATTTTCATGTTAACTGTAATGAATGAAAATGAAAATGAAAAT
GAAAATGAAAATGAAAATGAGACACCCACCTCATCCACCACCACTACCAC
TACCACCACCACCTCCAATGAAAATAATGTACTTTATGAATTATTTAAAC
TTTCAAAAACAGTTTGGAAACAAATGGCAAATGAAAATTTAATTTCAATG
AATGAAGTTGACAAAATGATTATTCCAATTAATTTTTATAGAAAAGATGA
GATTTTAGATTCAATTAAAATGGTTGAAAATGATTATGGTTTAAAGTTAA
TTTCAATAAAATTACATCTTCAAAAGTTCTCTGATAGTCATGATAGTATG
ATTTTATCAGATCAAGAAAAATCCGAAATTTTATTCTCATATATGAATGC
CGCTTGTGAAACATCACTTAAAAATTTTATAAATGGTGATCAAACTACTA
AAGATTCATTATATCAATTATTTATTTCAAAATTTATTAATCAAATTAAA
ATTTCACCAATTAAAAATATTGAAAATCTATTTAGTTATTATTCAATAAT
TTTAGAAAAAGATTAAAAAAAAAAAAAACAATAAAAAAAGGGTTTAATTT
TTAATCTAAAAATAG
Gap no gap
Contig length 615
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2880131
End point 2879516
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U03173
List of clone(s) 

est1=SSJ746Z,1,571
est2=CFD825Z,121,406
est3=SSB775Z,286,616
Translated Amino Acid sequence 
GGIFMLTVMNENENENENENENETPTSSTTTTTTTTTSNENNVLYELFKLSKTVWKQMAN
ENLISMNEVDKMIIPINFYRKDEILDSIKMVENDYGLKLISIKLHLQKFSDSHDSMILSD
QEKSEILFSYMNAACETSLKNFINGDQTTKDSLYQLFISKFINQIKISPIKNIENLFSYY
SIILEKD*kkkkq*kkglifnlki
Translated Amino Acid sequence (All Frames) 
Frame A:
kvvfsc*l**mkmkmkmkmkmkmrhpphppplplpppppmkimyfmnylnfqkqfgnkwq
mki*fq*mkltk*lfqlifiekmrf*iqlkwlkmimv*s*fq*nyifksslivmiv*fyq
ikknpkfyshi*mplvkhhlkil*mvikllkihyinylfqnlliklkfhqlkilkiylvi
iq*f*kkikkkknnkkrv*fli*k*


Frame B:
rwyfhvncne*k*k*k*k*k*k*dthlihhhyhyhhhlq*k*ctl*ii*tfknsletngk
*kfnfne*s*qndysn*fl*kr*dfrfn*ng*k*lwfkvnfnkitsskvl**s**ydfir
srkirnfiliyecrl*nit*kfykw*sny*rfiisiiyfkiy*sn*nftn*ky*ksi*ll
fnnfrkrlkkkktikkgfnf*skn


Frame C:
GGIFMLTVMNENENENENENENETPTSSTTTTTTTTTSNENNVLYELFKLSKTVWKQMAN
ENLISMNEVDKMIIPINFYRKDEILDSIKMVENDYGLKLISIKLHLQKFSDSHDSMILSD
QEKSEILFSYMNAACETSLKNFINGDQTTKDSLYQLFISKFINQIKISPIKNIENLFSYY
SIILEKD*kkkkq*kkglifnlki
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03173-1 (Contig-U03173-1Q)
/CSM_Contig/Contig-U03173-1Q.Seq.d
         (615 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03173-1 (Contig-U03173-1Q) /CSM_Contig/Conti...   664  0.0
Contig-U05085-1 (Contig-U05085-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13914-1 (Contig-U13914-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U12458-1 (Contig-U12458-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U12448-1 (Contig-U12448-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11145-1 (Contig-U11145-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U10397-1 (Contig-U10397-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U05372-1 (Contig-U05372-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U01435-1 (Contig-U01435-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11864-1 (Contig-U11864-1Q) /CSM_Contig/Conti...    34  0.17

>Contig-U03173-1 (Contig-U03173-1Q) /CSM_Contig/Contig-U03173-1Q.Seq.d
          Length = 615

 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Plus

                                                                       
Query: 114 tccaatgaaaataatgtactttatgaattatttaaactttcaaaaacagtttggaaacaa 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tccaatgaaaataatgtactttatgaattatttaaactttcaaaaacagtttggaaacaa 173

                                                                       
Query: 174 atggcaaatgaaaatttaatttcaatgaatgaagttgacaaaatgattattccaattaat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atggcaaatgaaaatttaatttcaatgaatgaagttgacaaaatgattattccaattaat 233

                                                                       
Query: 234 ttttatagaaaagatgagattttagattcaattaaaatggttgaaaatgattatggttta 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttttatagaaaagatgagattttagattcaattaaaatggttgaaaatgattatggttta 293

                                                                       
Query: 294 aagttaatttcaataaaattacatcttcaaaagttctctgatagtcatgatagtatgatt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagttaatttcaataaaattacatcttcaaaagttctctgatagtcatgatagtatgatt 353

                                                                       
Query: 354 ttatcagatcaagaaaaatccgaaattttattctcatatatgaatgccgcttgtgaaaca 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttatcagatcaagaaaaatccgaaattttattctcatatatgaatgccgcttgtgaaaca 413

                                              
Query: 414 tcacttaaaaattttataaatggtgatcaaactac 448
           |||||||||||||||||||||||||||||||||||
Sbjct: 414 tcacttaaaaattttataaatggtgatcaaactac 448


 Score = 85.7 bits (43), Expect = 5e-17
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 513 aaaaatattgaaaatctatttagttattattcaataattttag 555
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaaaatattgaaaatctatttagttattattcaataattttag 555


 Score = 52.0 bits (26), Expect = 7e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 590 gggtttaatttttaatctaaaaatag 615
           ||||||||||||||||||||||||||
Sbjct: 590 gggtttaatttttaatctaaaaatag 615


 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aaggtggtattttcatgttaactgt 25
          |||||||||||||||||||||||||
Sbjct: 1  aaggtggtattttcatgttaactgt 25


>Contig-U05085-1 (Contig-U05085-1Q) /CSM_Contig/Contig-U05085-1Q.Seq.d
          Length = 367

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 303 tcaataaaattacatcttcaaa 324
           ||||||||||||||||||||||
Sbjct: 200 tcaataaaattacatcttcaaa 221


>Contig-U13914-1 (Contig-U13914-1Q) /CSM_Contig/Contig-U13914-1Q.Seq.d
          Length = 1450

 Score = 36.2 bits (18), Expect = 0.043
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 181 atgaaaatttaatttcaa 198
           ||||||||||||||||||
Sbjct: 744 atgaaaatttaatttcaa 761


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,623
Number of Sequences: 6905
Number of extensions: 10623
Number of successful extensions: 1266
Number of sequences better than 10.0: 141
length of query: 615
length of database: 5,674,871
effective HSP length: 16
effective length of query: 599
effective length of database: 5,564,391
effective search space: 3333070209
effective search space used: 3333070209
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.26
Homology vs DNA 
Query= Contig-U03173-1 (Contig-U03173-1Q) /CSM_Contig/Contig-U03173-1Q.Seq.d
         (615 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91283) Dictyostelium discoideum slug cDNA, clone SSJ746.        666   0.0    2
(BJ374506) Dictyostelium discoideum cDNA clone:ddc8b08, 3' e...   436   e-124  2
(AU037327) Dictyostelium discoideum slug cDNA, clone SSB775.      236   6e-88  3
(CU855534) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    58   4e-04  1
(CU468105) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    58   4e-04  1
(BG022296) dab02c11.x1 NICHD_XGC_Sp1 Xenopus laevis cDNA clo...    50   0.10   1
(CT205272) Sus scrofa genomic clone PigE-261G5, genomic surv...    42   0.18   2
(AC233501) Solanum tuberosum chromosome 1 clone RH134N13, **...    34   0.23   2
(CT025734) Mouse DNA sequence from clone RP24-375J21 on chro...    48   0.40   1
(AC146376) Pan troglodytes BAC clone RP43-76K24 from chromos...    48   0.40   1
(AC146221) Pan troglodytes BAC clone RP43-33B24 from chromos...    48   0.40   1
(AC188573) Pan troglodytes chromosome 7 clone CH251-734D19, ...    48   0.40   1
(BH082072) RPCI-24-365N11.TJ RPCI-24 Mus musculus genomic cl...    48   0.40   1
(AG057242) Pan troglodytes DNA, clone: PTB-043M08.R.               48   0.40   1
(CU329671) Schizosaccharomyces pombe chromosome II.                36   0.69   2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.74   12
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    34   0.74   12
(AC087724) Arabidopsis thaliana chromosome I clone IGF-F16G5...    38   0.75   4
(DW269454) UI-S-GS0-ace-i-22-0-UI.s1 UI-S-GS0 Euprymna scolo...    44   0.76   2
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont...    44   0.86   2
(AF012877) Spiroplasma citri ribosomal protein S2 (rpsB), el...    36   1.00   2
(DX540041) GH_MBb0030H14r GH_MBb Gossypium hirsutum genomic ...    44   1.3    2
(CU655849) M.truncatula DNA sequence *** SEQUENCING IN PROGR...    36   1.4    6
(BX511168) Zebrafish DNA sequence from clone DKEY-22F5 in li...    46   1.6    1
(DX916945) gSpZap-784.bT7 Spironucleus Zap GSS Library Spiro...    32   1.6    3
(EU024653) Polistes sp. MD1 mitochondrion, partial genome.         32   1.8    4
(AC027409) Homo sapiens chromosome 10 clone RP11-176H20 map ...    38   2.0    4
(AC006615) Caenorhabditis elegans cosmid C36B7, complete seq...    32   2.4    4
(AC006103) Homo sapiens chromosome 10 clone LA10NC01_124_D_3...    40   2.4    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   2.4    8
(AM481034) Vitis vinifera contig VV78X211734.4, whole genome...    38   2.6    2
(CW274920) 104_748_11404684_116_35381_016 Sorghum methylatio...    38   2.9    2
(EL423206) CHCM2784.b1_O23.ab1 CHC(LMS) Texas blueweed Helia...    34   3.0    2
(EK024695) 1092955357262 Global-Ocean-Sampling_GS-31-01-01-1...    28   3.2    4
(AC092333) Homo sapiens chromosome 5 clone RP11-195A20, comp...    40   3.3    5
(CF935427) TrEST-B12H10.g TrEST-B Hypocrea jecorina cDNA clo...    32   3.6    3
(AM429119) Vitis vinifera contig VV78X246374.3, whole genome...    32   3.7    3
(AC218026) Bos taurus clone CH240-1J23, WORKING DRAFT SEQUEN...    38   4.1    4
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    34   5.1    12
(AC146777) Medicago truncatula clone mth2-173c10, complete s...    44   5.7    2
(AC110740) Mus musculus chromosome 8, clone RP24-421B13, com...    44   6.2    1
(AP001307) Arabidopsis thaliana genomic DNA, chromosome 3, P...    44   6.2    1
(AF114171) Sorghum bicolor BAC clone 25.M18, complete sequence.    44   6.2    1
(Z27078) Caenorhabditis elegans Cosmid K04H4.                      44   6.2    1
(X56979) C. elegans clb-2 gene for alpha1(IV) collagen.            44   6.2    1
(AC139718) Homo sapiens BAC clone RP11-269F21 from 4, comple...    44   6.2    1
(AC016778) Homo sapiens BAC clone CTD-3055C21 from 7p15.1-p1...    44   6.2    1
(AC009531) Homo sapiens chromosome 7 clone RP11-178P2, compl...    44   6.2    1
(AC007652) Homo sapiens clone RP11-23B6 from 7p14-15, comple...    44   6.2    1
(AC173145) Bos taurus clone CH240-524E24, WORKING DRAFT SEQU...    44   6.2    1
(ER757055) SB_BBc199-H21.F SB_BBc Sorghum bicolor genomic 5'...    44   6.2    1
(EK096714) 1092962041570 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EI678607) SB_BBd06-L14.F SB_BBd Sorghum bicolor genomic 5',...    44   6.2    1
(ED496612) ix15e12.g1 Sub-library of four pooled sorghum BAC...    44   6.2    1
(ED325067) AUAC-aaz13c09.b1 Ascaris suum whole genome shotgu...    44   6.2    1
(DU655443) OG_ABa0067F04.f OG_ABa Oryza granulata genomic cl...    44   6.2    1
(CZ461169) MCF750e20TR Human MCF7 breast cancer cell line li...    44   6.2    1
(CW788720) SP__Ba0048C20.r SP__Ba Sorghum propinquum genomic...    44   6.2    1
(CW501879) fsbb001f297o22f0 Sorghum methylation filtered lib...    44   6.2    1
(CW496877) fsbb001f289f13k0 Sorghum methylation filtered lib...    44   6.2    1
(CW390377) fsbb001f076a04k0 Sorghum methylation filtered lib...    44   6.2    1
(CW365065) fsbb001f037g16k0 Sorghum methylation filtered lib...    44   6.2    1
(CW346619) fsbb001f006d12f0 Sorghum methylation filtered lib...    44   6.2    1
(CW331505) 104_828_11480936_148_36021_018 Sorghum methylatio...    44   6.2    1
(CW331504) 104_828_11480936_116_36022_018 Sorghum methylatio...    44   6.2    1
(CW320175) 104_813_11474875_148_35896_080 Sorghum methylatio...    44   6.2    1
(CW320174) 104_813_11474875_116_35900_080 Sorghum methylatio...    44   6.2    1
(CW317995) 104_810_11473710_148_35870_031 Sorghum methylatio...    44   6.2    1
(CW230075) 104_671_11207656_116_37270_054 Sorghum methylatio...    44   6.2    1
(CW228089) 104_667_11206170_148_37245_067 Sorghum methylatio...    44   6.2    1
(CW207090) 104_636_11187933_116_36974_095 Sorghum methylatio...    44   6.2    1
(CW179518) 104_593_11160142_148_36630_085 Sorghum methylatio...    44   6.2    1
(CW172166) 104_583_11156135_148_36534_092 Sorghum methylatio...    44   6.2    1
(CW148373) 104_547_11141921_148_35008_079 Sorghum methylatio...    44   6.2    1
(CW126101) 104_506_11112708_148_34727_038 Sorghum methylatio...    44   6.2    1
(CW104594) 104_473_11012515_116_34442_068 Sorghum methylatio...    44   6.2    1
(CW093904) 104_457_11000035_116_37473_076 Sorghum methylatio...    44   6.2    1
(CW060520) 104_303_10519896_1_30042 Sorghum methylation filt...    44   6.2    1
(CL696918) SP__Ba0003F09.r SP__Ba Sorghum propinquum genomic...    44   6.2    1
(CL173875) 104_377_10891176_116_31793_312 Sorghum methylatio...    44   6.2    1
(CL169147) 104_367_10812421_148_31786_277 Sorghum methylatio...    44   6.2    1
(CL169146) 104_367_10812421_116_31787_277 Sorghum methylatio...    44   6.2    1
(BZ694530) SP__Ba0048C20.r SP__Ba Sorghum propinquum genomic...    44   6.2    1
(BZ343156) ho35e02.b2 WGS-SbicolorF (JM107 adapted methyl fi...    44   6.2    1
(AU266846) Dictyostelium discoideum vegetative cDNA clone:VS...    44   6.2    1
(AU072821) Dictyostelium discoideum slug cDNA, clone SSF176.       44   6.2    1
(CF757364) DSAF1_17_A07.g1_A011 Drought-stressed after flowe...    44   6.2    1
(C92738) Dictyostelium discoideum slug cDNA, clone SSF176.         44   6.2    1
(EY081364) CAZI14781.fwd CAZI Artemisia annua normalized lea...    44   6.2    1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    44   6.2    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    44   6.2    1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    44   6.2    1
(AP009178) Nitratiruptor sp. SB155-2 genomic DNA, complete g...    44   6.2    1
(AP000568) Homo sapiens genomic DNA, chromosome 21q21.1-q21....    38   6.3    2
(EF608598) Homo sapiens clone BAC RPCI-11-487B5, *** SEQUENC...    34   6.6    4
(AC090721) Homo sapiens chromosome 15 clone RP11-210M15 map ...    34   6.6    4
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ...    34   7.5    6
(CP000867) Methanococcus maripaludis C6, complete genome.          36   8.1    12
(AM466830) Vitis vinifera contig VV78X136099.6, whole genome...    38   8.6    3
(AM470990) Vitis vinifera contig VV78X039970.9, whole genome...    42   9.4    2
(AC184647) Strongylocentrotus purpuratus clone R3-3043F14, W...    40   9.5    4

>(C91283) Dictyostelium discoideum slug cDNA, clone SSJ746.
          Length = 571

 Score =  666 bits (336), Expect(2) = 0.0
 Identities = 336/336 (100%)
 Strand = Plus / Plus


Query: 118 atgaaaataatgtactttatgaattatttaaactttcaaaaacagtttggaaacaaatgg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 atgaaaataatgtactttatgaattatttaaactttcaaaaacagtttggaaacaaatgg 177


Query: 178 caaatgaaaatttaatttcaatgaatgaagttgacaaaatgattattccaattaattttt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 caaatgaaaatttaatttcaatgaatgaagttgacaaaatgattattccaattaattttt 237


Query: 238 atagaaaagatgagattttagattcaattaaaatggttgaaaatgattatggtttaaagt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atagaaaagatgagattttagattcaattaaaatggttgaaaatgattatggtttaaagt 297


Query: 298 taatttcaataaaattacatcttcaaaagttctctgatagtcatgatagtatgattttat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 taatttcaataaaattacatcttcaaaagttctctgatagtcatgatagtatgattttat 357


Query: 358 cagatcaagaaaaatccgaaattttattctcatatatgaatgccgcttgtgaaacatcac 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagatcaagaaaaatccgaaattttattctcatatatgaatgccgcttgtgaaacatcac 417


Query: 418 ttaaaaattttataaatggtgatcaaactactaaag 453
           ||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttaaaaattttataaatggtgatcaaactactaaag 453

 Score = 50.1 bits (25), Expect(2) = 0.0
 Identities = 25/25 (100%)
 Strand = Plus / Plus


Query: 1  aaggtggtattttcatgttaactgt 25
          |||||||||||||||||||||||||
Sbjct: 1  aaggtggtattttcatgttaactgt 25

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 670,202,482
Number of extensions: 43836318
Number of successful extensions: 3864925
Number of sequences better than 10.0: 104
Length of query: 615
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 592
Effective length of database: 99,442,330,388
Effective search space: 58869859589696
Effective search space used: 58869859589696
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.22
Homology vs Protein 
Query= Contig-U03173-1 (Contig-U03173-1Q) /CSM_Contig/Contig-U03173-1Q.Seq.d
         (615 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297_2174(AE014297|pid:none) Drosophila melanogaster chromos...    41   0.031
AY051414_1(AY051414|pid:none) Drosophila melanogaster GH09326 fu...    40   0.040
CP001348_951(CP001348|pid:none) Clostridium cellulolyticum H10, ...    39   0.090
CP000685_3138(CP000685|pid:none) Flavobacterium johnsoniae UW101...    38   0.26
CR940352_812(CR940352|pid:none) Theileria annulata strain Ankara...    37   0.45
(Q9PK65) RecName: Full=Exodeoxyribonuclease 7 large subunit;    ...    35   1.7
CP000852_282(CP000852|pid:none) Caldivirga maquilingensis IC-167...    35   1.7
(Q9HH76) RecName: Full=Undecaprenyl pyrophosphate synthetase;   ...    35   2.2
CP001056_1905(CP001056|pid:none) Clostridium botulinum B str. Ek...    35   2.2
(Q7VQB2) RecName: Full=S-adenosylmethionine:tRNA ribosyltransfer...    34   2.9
CP000560_2610(CP000560|pid:none) Bacillus amyloliquefaciens FZB4...    33   4.9
S46430(S46430;S49106) botulinum neurotoxin-associated protein AN...    33   6.4
DQ445482_6(DQ445482|pid:none) Nosema bombycis contig 2, partial ...    33   6.4
AM398681_2141(AM398681|pid:none) Flavobacterium psychrophilum JI...    33   8.4
CP001078_2576(CP001078|pid:none) Clostridium botulinum E3 str. A...    33   8.4
AM910996_413(AM910996|pid:none) Plasmodium knowlesi strain H chr...    33   8.4

>AE014297_2174(AE014297|pid:none) Drosophila melanogaster chromosome
           3R, complete sequence.
          Length = 1417

 Score = 40.8 bits (94), Expect = 0.031
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
 Frame = +3

Query: 174 MANENLISMNEVDKMIIPINFYRKDEILDSIKMVENDYGLKLISIKLHLQKFSD-SHDSM 350
           + +E+++S+N   ++ IP+  +RK ++      V+N  GL   S+ L L++  D  HD +
Sbjct: 596 LMSEDMVSINGDRQIFIPVGMFRKSKVAIKPVEVDNVQGLLTRSLMLELKRMKDLQHDHL 655

Query: 351 I-----LSDQEKSEILFSYMNAACETSLKNFINGDQTTKDSLYQL 470
           +       DQ +S +L  Y     + SL++ +  +Q   D +++L
Sbjct: 656 VKFYGACLDQRRSFLLTEY---CPKGSLQDILENEQFQLDWMFRL 697

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 553,596,502
Number of extensions: 8103148
Number of successful extensions: 22487
Number of sequences better than 10.0: 16
Number of HSP's gapped: 22471
Number of HSP's successfully gapped: 16
Length of query: 205
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 82
Effective length of database: 653,084,107
Effective search space: 53552896774
Effective search space used: 53552896774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U03173-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0