Contig-U15834-1
Contig ID Contig-U15834-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15834-1 (Contig-U15834-1Q) /CSM_Contig/Contig-U15834-1Q.Seq.d
GTCAAAAAATAATTAAGATAAAGATTAACACACCATGTTTAATATTTGAA
TAATGTTAAATAACATATTAGAATTATTGCAAGCAAAAAGTGGTTTTGAC
AATAATAATAGTAATAACAATAATAACAATAATAATAATAATAATAATAA
TGACAATATTGAAAAACTTAAATTATTTTCAAAATCACAAATATTATTAT
TACCACAACCCCAAATAGATAACCAACCCTCATTTTATTATCAAGATAAA
GTTGAATCGATTAAACCAATCATACAGGTAAAGGGTATAGGAGTTCTTTC
AATACCATGTAGTGATGAACAAATTAGAAAAGTTATTAAAACCTATGGAA
CTCGTGAATCATTTGTAAAGGGATATGATACAATCAATGATATCGAAGTA
AGAAAAGTTTGGAAAATCGATCCTGATTCACTAGAGTTTTTAATTGATAA
ACCTCCAATAAAGAGAGTTTTAAAATCAAAATTAATTATTGATCAATCAC
CATCATCACCATTTCCATCACCATCACCAATAAAACCAAAAAAATCAACA
AAGGAGCCAAAAGAGCCTACAGAACCAGCAGAACCAACAACAGAATCAAC
AATAGAGGAACCAAATTCCATCGAAAAAACAGACGTAATAAATAAAATAG
CAGATGAAATGGAGGATATATCTACTGGTGATCAACAATCTAATGAAAAG
ATACTTGCAAAGGATATACCTCAAATTGAGCCATCTACTACAAAAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGTAG
TAGCAGCAGCAATTGAAACAATTGAACAACCATCTAAAGTGATGCTAAAT
AAAGAAACTTCTTTGATATCCTCAACACCAGATCTTATAGAAGTGGAAAA
GAATAATTTATCAACATTACCCACTTCTAAACCAAAAAAATCAAGAGCAA
GAGCAACAAAACCAAATGGAGAATCTACAACCAAATCAAAAAAAACCAAA
ACAGTTTCAAATGAATCATCAACAGACATAACAGAATCAAGTACATCAGA
GCCAACAACAACAGGCCTACAGAACCAGCAGAACCAACAACAGAATCAAC
AATAGAGGAACCAAATTCCATCGAAAAAACAGACGTAATAAATAAAATAG
CAGATGAAATGGAGGATATATCTACTGGTGATCAACAATCTAATGAAAAG
ATACTTGCAAAGGATATACCTCAAATTGAGCCATCTACTACAAAAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGTAG
TAGCAGCAGCAATTGAAACAATTGAACAACCATCTAAAGTGATGCTAAAT
AAAGAAACTTCTTTGATATCCTCAACACCAGATCTTATAGAAGTGGAAAA
GAATAATTTATCAACATTACCCACTTCTAAACCAAAAAAATCAAGAGCAA
GAGCAACAAAACCAAATGGAGAATCTACAACCAAATCAAAAAAAACCAAA
ACAGTTTCAAATGAATCATCAACAGACATAACAGAATCAAGTACATCAGA
GCCAACAACAACAGCAACAACAGCAACAGCAACAACAACAACAGCAACAA
CAGCAGCAAGAAAATAAAAATCAAAAAGATATCCAGGCAGAAAAAGAAAA
TAATGAAATAGAAAAAGAAAAAGAAAATAATGAAATAGAAAAAGCAAATG
ATAAAGAAGAAGAATTAATGGAAAAATTATTTAAATCAATATCAAAACAA
CTTGAAGAGAAACAAATGACCGGATATTTATTAGAACATAAATATACCTA
TAAATATTTCGATTGTTTAAAAGGTAGAGATAGAATAGTTGGTGAAAGAT
TAAAAAGAATATCTAAAGAATTGGNTTGTAATTTCTATTNGACAGGTATT
AATTTCTCGGAAATATNATATAAACTCNCAATTATC----------CCAA
AACCAAAGAATGAAATTGATAAATGGAAAATTGCATTGGATGAGGTAGTT
GAAAAGGTTAAAAAAGGATTAGGTATTGATGAAAATGAAATATTGGAAGC
AAATTTCTCAAATCTCTACGTTTATGACAAAGGTGGTAAATTTTCTATAC
CTCATGTAAATACTGAAAAAGATAAGAGAATGTTTGCAACTTTAACATTT
GTTTTACCAACTCAATTGAAAACACCCCACAAAGGTGGCCAATTATTAAT
TACACACAACGGTGAAACCATTCAATTATTTCAAGAGAATAATTCACTTG
ATAGAGTCATTGTTAATAGTATTAATAATGGTGATAATAACAACAACAAT
AATAATAGTAATAATAATAATGATGATTTACTCTCAAATACACTAACTGA
AAGTATCACTAAAACAACAGCTACAACAACAACAAAAACAACAACAACAA
CACAAACAAATAAAGAGATAGAAACCACAAATTCAGCACCAATAGAAAAT
TTAGAGGTAGAAATGTCATCATCAAATAAACTTAGTCCAAATGATTTTCA
AATAAATTATTCATCATTCTATTCAGATTGTGTTTGTGAAATGAACCAGG
TTACCAAAGGATTAATGGTTTGTTTAGTTTATAATTTAATAAGAAATGGT
AAAAAACCTATCAACAACAACAACAGCAACAATATAGCAACAAAACAAGT
TCCTTCATTAGTAGAGAAAATGATATTTCACAAGATAGTATTTTACCAAT
TGATAATAAACAATCACAACAACAACAGCAAGAAAATAAAAATCAAAAAG
ATATCCAGGCAGAAAAAGAAAATAATGAAATAGAAAAAGAAAAAGAAAAT
AATGAAATAGAAAAAGCAAATGATAAAGAAGAAGAATTAATGGAAAAATT
ATTTAAATCAATATCAAAACAACTTGAAGAGAAACAAATGACCGGATATT
TATTAGAACATAA

Gap gap included
Contig length 2903
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 6
Number of EST 9
Link to clone list U15834
List of clone(s)

est1=CFC273F,1,550
est2=SFK420F,11,632
est3=VHL560F,268,879
est4=CFC273H,565,1564
est5=SFG156Z,1281,1936
est6=CHL454Z,1937,2560
est7=VHJ413Z,1962,2557
est8=CFC273Z,2007,2718
est9=VHL560Z,2383,2903
Translated Amino Acid sequence
sknn*dkd*htmfni*imlnnilellqaksgfdnnnsnnnnnnnnnnnnndnieklklfs
ksqilllpqpqidnqpsfyyqdkvesikpiiqvkgigvlsipcsdeqirkviktygtres
fvkgydtindievrkvwkidpdsleflidkppikrvlkskliidqspsspfpspspikpk
kstkepkeptepaepttestieepnsiektdvinkiademedistgdqqsnekilakdip
qiepsttkttttttttttttttttavvaaaietieqpskvmlnketslisstpdlievek
nnlstlptskpkksraratkpngesttkskktktvsnesstditesstseptttglqnqq
nqqqnqq*rnqipskkqt**ik*qmkwriyllvinnlmkrylqriylklshllqkqqqqq
qqqqqqqqqqqq**qqqlkqlnnhlk*c*ikkll*ypqhqil*kwkriiyqhypllnqkn
qeqeqqnqmenlqpnqkkpkqfqmnhqqt*QNQVHQSQQQQQQQQQQQQQQQQQQQENKN
QKDIQAEKENNEIEKEKENNEIEKANDKEEELMEKLFKSISKQLEEKQMTGYLLEHKYTY
KYFDCLKGRDRIVGERLKRISKELXCNFYXTGINFSEIXYKLXII---

---PKPKNEIDKWKIALDEVVEKVKKGLGIDENEILEANFSNLYVYDKGGKFSIPHVNTE
KDKRMFATLTFVLPTQLKTPHKGGQLLITHNGETIQLFQENNSLDRVIVNSINNGDNNNN
NNNSNNNNDDLLSNTLTESITKTTATTTTKTTTTTQTNKEIETTNSAPIENLEVEMSSSN
KLSPNDFQINYSSFYSDCVCEMNQVTKGLMVCLVYNLIRNGKKPINNNNSNNIATKQVPS
LVEKMIFHKIVFYQLIINNHNNNSKKIKIKKISRQKKKIMK*kkkkkimk*kkqmikkkn
*wknylnqyqnnlkrnk*pdiy*ni


Translated Amino Acid sequence (All Frames)
Frame A:
vkk*lr*rlthhv*ylnnvk*hiriiaskkwf*q*****q**q********qy*kt*iif
kitniiitttpnr*ptlillsr*s*id*tnhtgkgyrssfntm***tn*ksy*nlwns*i
ickgi*ynq*yrskkslenrs*ftrvfn**tsnkesfkikiny*sitiitisititnktk
kinkgakrayrtsrtnnrinnrgtkfhrknrrnk*nsr*nggyiyw*sti**kdtckgyt
sn*aiyyknnnnnnnnnnnnnnnnssssssn*nn*tti*sdak*rnffdilntrsyrsgk
e*finithf*tkkiksksnktkwriynqikknqnsfk*iinrhnrikyirannnrptepa
epttestieepnsiektdvinkiademedistgdqqsnekilakdipqiepsttkttttt
tttttttttttavvaaaietieqpskvmlnketslisstpdlieveknnlstlptskpkk
sraratkpngesttkskktktvsnesstditesstseptttattatattttattaark*k
skrypgrkrk**nrkrkrk**nrksk**rrringkii*iniktt*retndrifirt*iyl
*ifrlfkr*r*nsw*kikkni*rigl*flxdry*flgnxi*txny---

---PKPKNEIDKWKIALDEVVEKVKKGLGIDENEILEANFSNLYVYDKGGKFSIPHVNTE
KDKRMFATLTFVLPTQLKTPHKGGQLLITHNGETIQLFQENNSLDRVIVNSINNGDNNNN
NNNSNNNNDDLLSNTLTESITKTTATTTTKTTTTTQTNKEIETTNSAPIENLEVEMSSSN
KLSPNDFQINYSSFYSDCVCEMNQVTKGLMVCLVYNLIRNGKKPINNNNSNNIATKQVPS
LVEKMIFHKIVFYQLIINNHNNNSKKIKIKKISRQKKKIMK*kkkkkimk*kkqmikkkn
*wknylnqyqnnlkrnk*pdiy*ni

Frame B:
sknn*dkd*htmfni*imlnnilellqaksgfdnnnsnnnnnnnnnnnnndnieklklfs
ksqilllpqpqidnqpsfyyqdkvesikpiiqvkgigvlsipcsdeqirkviktygtres
fvkgydtindievrkvwkidpdsleflidkppikrvlkskliidqspsspfpspspikpk
kstkepkeptepaepttestieepnsiektdvinkiademedistgdqqsnekilakdip
qiepsttkttttttttttttttttavvaaaietieqpskvmlnketslisstpdlievek
nnlstlptskpkksraratkpngesttkskktktvsnesstditesstseptttglqnqq
nqqqnqq*rnqipskkqt**ik*qmkwriyllvinnlmkrylqriylklshllqkqqqqq
qqqqqqqqqqqq**qqqlkqlnnhlk*c*ikkll*ypqhqil*kwkriiyqhypllnqkn
qeqeqqnqmenlqpnqkkpkqfqmnhqqt*QNQVHQSQQQQQQQQQQQQQQQQQQQENKN
QKDIQAEKENNEIEKEKENNEIEKANDKEEELMEKLFKSISKQLEEKQMTGYLLEHKYTY
KYFDCLKGRDRIVGERLKRISKELXCNFYXTGINFSEIXYKLXII---

---qnqrmklingklhwmr*lkrlkkd*vlmkmkywkqisqistfmtkvvnflylm*ilk
kireclql*hlfyqln*khptkvany*lhttvkpfnyfkriihliesllivlimviittt
iiiviiimmiysqih*lkvslkqqlqqqqkqqqqhkqikr*kpqiqhq*ki*r*kchhqi
nlvqmifk*iihhsiqivfvk*trlpkd*wfv*fii**emvknlsttttati*qqnkflh
**rk*yftr*yftn***tittttark*kskrypgrkrk**nrkrkrk**nrksk**rrri
ngkii*iniktt*retndrifirt*

Frame C:
qkiikikintpclife*c*ity*nyckqkvvltiiivitiitiiiiiiimtilknlnyfq
nhkyyyyhnpk*itnphfiikiklnrlnqsyr*rv*effqyhvvmnklekllkpmelvnh
l*rdmiqsmisk*ekfgksilih*sf*linlq*ref*nqn*llinhhhhhfhhhhq*nqk
nqqrsqkslqnqqnqqqnqq*rnqipskkqt**ik*qmkwriyllvinnlmkrylqriyl
klshllqkqqqqqqqqqqqqqqqqq**qqqlkqlnnhlk*c*ikkll*ypqhqil*kwkr
iiyqhypllnqknqeqeqqnqmenlqpnqkkpkqfqmnhqqt*qnqvhqsqqqqayrtsr
tnnrinnrgtkfhrknrrnk*nsr*nggyiyw*sti**kdtckgytsn*aiyyknnnnnn
nnnnnnnnnnssssssn*nn*tti*sdak*rnffdilntrsyrsgke*finithf*tkki
ksksnktkwriynqikknqnsfk*iinrhnrikyirannnsnnsnsnnnnsnnsskkiki
kkisrqkkkimk*kkkkkimk*kkqmikkkn*wknylnqyqnnlkrnk*pdiy*ninipi
nisiv*kveie*lvkd*keylknwxvisixqvlisrkyxinsql---

---ktke*n**mencig*gs*kg*kriry**k*nigskflkslrl*qrw*ifytscky*k
r*envcnfnicftnsientpqrwpiinytqr*nhsiisre*ft**shc**y**w***qqq
*********ftlkytn*kyh*nnsynnnknnnnntnk*rdrnhkfstnrkfrgrnviik*
t*sk*fsnklfiilfrlcl*nepgyqringlfsl*fnkkw*ktyqqqqqqqysnktssfi
srendisqdsilpidnkqsqqqqqenknqkdiqaekenneiekekenneiekandkeeel
meklfksiskqleekqmtgylleh

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15834-1 (Contig-U15834-1Q)
/CSM_Contig/Contig-U15834-1Q.Seq.d
(2913 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15834-1 (Contig-U15834-1Q) /CSM_Contig/Conti... 1124 0.0
Contig-U15606-1 (Contig-U15606-1Q) /CSM_Contig/Conti... 46 3e-04
Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Conti... 44 0.001
Contig-U14670-1 (Contig-U14670-1Q) /CSM_Contig/Conti... 42 0.005
Contig-U11212-1 (Contig-U11212-1Q) /CSM_Contig/Conti... 42 0.005
Contig-U15931-1 (Contig-U15931-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U15709-1 (Contig-U15709-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U14171-1 (Contig-U14171-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U12341-1 (Contig-U12341-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U12082-1 (Contig-U12082-1Q) /CSM_Contig/Conti... 40 0.019

>Contig-U15834-1 (Contig-U15834-1Q) /CSM_Contig/Contig-U15834-1Q.Seq.d
Length = 2913

Score = 1124 bits (567), Expect = 0.0
Identities = 581/588 (98%)
Strand = Plus / Plus


Query: 152 gacaatattgaaaaacttaaattattttcaaaatcacaaatattattattaccacaaccc 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gacaatattgaaaaacttaaattattttcaaaatcacaaatattattattaccacaaccc 211


Query: 212 caaatagataaccaaccctcattttattatcaagataaagttgaatcgattaaaccaatc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 caaatagataaccaaccctcattttattatcaagataaagttgaatcgattaaaccaatc 271


Query: 272 atacaggtaaagggtataggagttctttcaataccatgtagtgatgaacaaattagaaaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atacaggtaaagggtataggagttctttcaataccatgtagtgatgaacaaattagaaaa 331


Query: 332 gttattaaaacctatggaactcgtgaatcatttgtaaagggatatgatacaatcaatgat 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gttattaaaacctatggaactcgtgaatcatttgtaaagggatatgatacaatcaatgat 391


Query: 392 atcgaagtaagaaaagtttggaaaatcgatcctgattcactagagtttttaattgataaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atcgaagtaagaaaagtttggaaaatcgatcctgattcactagagtttttaattgataaa 451


Query: 452 cctccaataaagagagttttaaaatcaaaattaattattgatcaatcaccatcatcacca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctccaataaagagagttttaaaatcaaaattaattattgatcaatcaccatcatcacca 511


Query: 512 tttccatcaccatcaccaataaaaccnnnnnnntcaacaaaggagccaaaagagcctaca 571
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 512 tttccatcaccatcaccaataaaaccaaaaaaatcaacaaaggagccaaaagagcctaca 571


Query: 572 gaaccagcagaaccaacaacagaatcaacaatagaggaaccaaattccatcgaaaaaaca 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaaccagcagaaccaacaacagaatcaacaatagaggaaccaaattccatcgaaaaaaca 631


Query: 632 gacgtaataaataaaatagcagatgaaatggaggatatatctactggtgatcaacaatct 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gacgtaataaataaaatagcagatgaaatggaggatatatctactggtgatcaacaatct 691


Query: 692 aatgaaaagatacttgcaaaggatatacctcaaattgagccatctact 739
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aatgaaaagatacttgcaaaggatatacctcaaattgagccatctact 739


Score = 1003 bits (506), Expect = 0.0
Identities = 548/548 (100%)
Strand = Plus / Plus


Query: 1715 ttaatggaaaaattatttaaatcaatatcaaaacaacttgaagagaaacaaatgaccgga 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 ttaatggaaaaattatttaaatcaatatcaaaacaacttgaagagaaacaaatgaccgga 1774


Query: 1775 tatttattagaacataaatatacctataaatatttcgattgtttaaaaggtagagataga 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 tatttattagaacataaatatacctataaatatttcgattgtttaaaaggtagagataga 1834


Query: 1835 atagttggtgaaagattaaaaagaatatctaaagaattggnttgtaatttctattngaca 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 atagttggtgaaagattaaaaagaatatctaaagaattggnttgtaatttctattngaca 1894


Query: 1895 ggtattaatttctcggaaatatnatataaactcncaattatcnnnnnnnnnnccaaaacc 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1895 ggtattaatttctcggaaatatnatataaactcncaattatcnnnnnnnnnnccaaaacc 1954


Query: 1955 aaagaatgaaattgataaatggaaaattgcattggatgaggtagttgaaaaggttaaaaa 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955 aaagaatgaaattgataaatggaaaattgcattggatgaggtagttgaaaaggttaaaaa 2014


Query: 2015 aggattaggtattgatgaaaatgaaatattggaagcaaatttctcaaatctctacgttta 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015 aggattaggtattgatgaaaatgaaatattggaagcaaatttctcaaatctctacgttta 2074


Query: 2075 tgacaaaggtggtaaattttctatacctcatgtaaatactgaaaaagataagagaatgtt 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2075 tgacaaaggtggtaaattttctatacctcatgtaaatactgaaaaagataagagaatgtt 2134


Query: 2135 tgcaactttaacatttgttttaccaactcaattgaaaacaccccacaaaggtggccaatt 2194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2135 tgcaactttaacatttgttttaccaactcaattgaaaacaccccacaaaggtggccaatt 2194


Query: 2195 attaattacacacaacggtgaaaccattcaattatttcaagagaataattcacttgatag 2254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2195 attaattacacacaacggtgaaaccattcaattatttcaagagaataattcacttgatag 2254


Query: 2255 agtcattg 2262
||||||||
Sbjct: 2255 agtcattg 2262


Score = 795 bits (401), Expect = 0.0
Identities = 431/446 (96%)
Strand = Plus / Plus


Query: 794 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 853


Query: 854 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 913


Query: 914 acattacccacttctaaaccnnnnnnntcaagagcaagagcaacaaaaccaaatggagaa 973
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 914 acattacccacttctaaaccaaaaaaatcaagagcaagagcaacaaaaccaaatggagaa 973


Query: 974 tctacaaccaaatcnnnnnnnnccaaaacagtttcaaatgaatcatcaacagacataaca 1033
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 974 tctacaaccaaatcaaaaaaaaccaaaacagtttcaaatgaatcatcaacagacataaca 1033


Query: 1034 gaatcaagtacatcagagccaacaacaacaggcctacagaaccagcagaaccaacaacag 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 gaatcaagtacatcagagccaacaacaacaggcctacagaaccagcagaaccaacaacag 1093


Query: 1094 aatcaacaatagaggaaccaaattccatcgaaaaaacagacgtaataaataaaatagcag 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 aatcaacaatagaggaaccaaattccatcgaaaaaacagacgtaataaataaaatagcag 1153


Query: 1154 atgaaatggaggatatatctactggtgatcaacaatctaatgaaaagatacttgcaaagg 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 atgaaatggaggatatatctactggtgatcaacaatctaatgaaaagatacttgcaaagg 1213


Query: 1214 atatacctcaaattgagccatctact 1239
||||||||||||||||||||||||||
Sbjct: 1214 atatacctcaaattgagccatctact 1239


Score = 448 bits (226), Expect = e-125
Identities = 256/271 (94%)
Strand = Plus / Plus


Query: 794 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 1353


Query: 854 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 1413


Query: 914 acattacccacttctaaaccnnnnnnntcaagagcaagagcaacaaaaccaaatggagaa 973
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1414 acattacccacttctaaaccaaaaaaatcaagagcaagagcaacaaaaccaaatggagaa 1473


Query: 974 tctacaaccaaatcnnnnnnnnccaaaacagtttcaaatgaatcatcaacagacataaca 1033
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 tctacaaccaaatcaaaaaaaaccaaaacagtttcaaatgaatcatcaacagacataaca 1533


Query: 1034 gaatcaagtacatcagagccaacaacaacag 1064
|||||||||||||||||||||||||||||||
Sbjct: 1534 gaatcaagtacatcagagccaacaacaacag 1564


Score = 424 bits (214), Expect = e-118
Identities = 244/259 (94%)
Strand = Plus / Plus


Query: 1294 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 1353


Query: 1354 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 1413


Query: 1414 acattacccacttctaaaccnnnnnnntcaagagcaagagcaacaaaaccaaatggagaa 1473
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1414 acattacccacttctaaaccaaaaaaatcaagagcaagagcaacaaaaccaaatggagaa 1473


Query: 1474 tctacaaccaaatcnnnnnnnnccaaaacagtttcaaatgaatcatcaacagacataaca 1533
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 tctacaaccaaatcaaaaaaaaccaaaacagtttcaaatgaatcatcaacagacataaca 1533


Query: 1534 gaatcaagtacatcagagc 1552
|||||||||||||||||||
Sbjct: 1534 gaatcaagtacatcagagc 1552


Score = 424 bits (214), Expect = e-118
Identities = 244/259 (94%)
Strand = Plus / Plus


Query: 1294 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 853


Query: 1354 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 913


Query: 1414 acattacccacttctaaaccnnnnnnntcaagagcaagagcaacaaaaccaaatggagaa 1473
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 914 acattacccacttctaaaccaaaaaaatcaagagcaagagcaacaaaaccaaatggagaa 973


Query: 1474 tctacaaccaaatcnnnnnnnnccaaaacagtttcaaatgaatcatcaacagacataaca 1533
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 974 tctacaaccaaatcaaaaaaaaccaaaacagtttcaaatgaatcatcaacagacataaca 1033


Query: 1534 gaatcaagtacatcagagc 1552
|||||||||||||||||||
Sbjct: 1034 gaatcaagtacatcagagc 1052


Score = 400 bits (202), Expect = e-111
Identities = 202/202 (100%)
Strand = Plus / Plus


Query: 2410 ataaagagatagaaaccacaaattcagcaccaatagaaaatttagaggtagaaatgtcat 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2410 ataaagagatagaaaccacaaattcagcaccaatagaaaatttagaggtagaaatgtcat 2469


Query: 2470 catcaaataaacttagtccaaatgattttcaaataaattattcatcattctattcagatt 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2470 catcaaataaacttagtccaaatgattttcaaataaattattcatcattctattcagatt 2529


Query: 2530 gtgtttgtgaaatgaaccaggttaccaaaggattaatggtttgtttagtttataatttaa 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2530 gtgtttgtgaaatgaaccaggttaccaaaggattaatggtttgtttagtttataatttaa 2589


Query: 2590 taagaaatggtaaaaaacctat 2611
||||||||||||||||||||||
Sbjct: 2590 taagaaatggtaaaaaacctat 2611


Score = 347 bits (175), Expect = 6e-95
Identities = 175/175 (100%)
Strand = Plus / Plus


Query: 1065 gcctacagaaccagcagaaccaacaacagaatcaacaatagaggaaccaaattccatcga 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcctacagaaccagcagaaccaacaacagaatcaacaatagaggaaccaaattccatcga 624


Query: 1125 aaaaacagacgtaataaataaaatagcagatgaaatggaggatatatctactggtgatca 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaacagacgtaataaataaaatagcagatgaaatggaggatatatctactggtgatca 684


Query: 1185 acaatctaatgaaaagatacttgcaaaggatatacctcaaattgagccatctact 1239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaatctaatgaaaagatacttgcaaaggatatacctcaaattgagccatctact 739


Score = 347 bits (175), Expect = 6e-95
Identities = 175/175 (100%)
Strand = Plus / Plus


Query: 565 gcctacagaaccagcagaaccaacaacagaatcaacaatagaggaaccaaattccatcga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 gcctacagaaccagcagaaccaacaacagaatcaacaatagaggaaccaaattccatcga 1124


Query: 625 aaaaacagacgtaataaataaaatagcagatgaaatggaggatatatctactggtgatca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 aaaaacagacgtaataaataaaatagcagatgaaatggaggatatatctactggtgatca 1184


Query: 685 acaatctaatgaaaagatacttgcaaaggatatacctcaaattgagccatctact 739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 acaatctaatgaaaagatacttgcaaaggatatacctcaaattgagccatctact 1239


Score = 198 bits (100), Expect = 3e-50
Identities = 100/100 (100%)
Strand = Plus / Plus


Query: 1 gtcaaaaaataattaagataaagattaacacaccatgtttaatatttgaataatgttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcaaaaaataattaagataaagattaacacaccatgtttaatatttgaataatgttaaa 60


Query: 61 taacatattagaattattgcaagcaaaaagtggttttgac 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taacatattagaattattgcaagcaaaaagtggttttgac 100


Score = 159 bits (80), Expect = 3e-38
Identities = 80/80 (100%)
Strand = Plus / Plus


Query: 2649 gttccttcattagtagagaaaatgatatttcacaagatagtattttaccaattgataata 2708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2649 gttccttcattagtagagaaaatgatatttcacaagatagtattttaccaattgataata 2708


Query: 2709 aacaatcacaacaacaacag 2728
||||||||||||||||||||
Sbjct: 2709 aacaatcacaacaacaacag 2728


Score = 153 bits (77), Expect = 2e-36
Identities = 77/77 (100%)
Strand = Plus / Plus


Query: 1715 ttaatggaaaaattatttaaatcaatatcaaaacaacttgaagagaaacaaatgaccgga 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 ttaatggaaaaattatttaaatcaatatcaaaacaacttgaagagaaacaaatgaccgga 2896


Query: 1775 tatttattagaacataa 1791
|||||||||||||||||
Sbjct: 2897 tatttattagaacataa 2913


Score = 127 bits (64), Expect = 1e-28
Identities = 64/64 (100%)
Strand = Plus / Plus


Query: 2850 tatttaaatcaatatcaaaacaacttgaagagaaacaaatgaccggatatttattagaac 2909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 tatttaaatcaatatcaaaacaacttgaagagaaacaaatgaccggatatttattagaac 2909


Query: 2910 ataa 2913
||||
Sbjct: 2910 ataa 2913


Score = 127 bits (64), Expect = 1e-28
Identities = 64/64 (100%)
Strand = Plus / Plus


Query: 2850 tatttaaatcaatatcaaaacaacttgaagagaaacaaatgaccggatatttattagaac 2909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1728 tatttaaatcaatatcaaaacaacttgaagagaaacaaatgaccggatatttattagaac 1787


Query: 2910 ataa 2913
||||
Sbjct: 1788 ataa 1791


Score = 77.8 bits (39), Expect = 9e-14
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 2322 gatgatttactctcaaatacactaactgaaagtatcact 2360
|||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 gatgatttactctcaaatacactaactgaaagtatcact 2360


>Contig-U15606-1 (Contig-U15606-1Q) /CSM_Contig/Contig-U15606-1Q.Seq.d
Length = 1664

Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus


Query: 172 attattttcaaaatcacaaatattatt 198
|||||||||||||||| ||||||||||
Sbjct: 325 attattttcaaaatcaaaaatattatt 299


>Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Contig-U11292-1Q.Seq.d
Length = 1939

Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Minus


Query: 500 ccatcatcaccatttccatcaccatcacca 529
||||||||||||| |||||||||||||||
Sbjct: 981 ccatcatcaccatcaccatcaccatcacca 952


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,738
Number of Sequences: 8402
Number of extensions: 86738
Number of successful extensions: 8174
Number of sequences better than 10.0: 289
length of query: 2913
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2896
effective length of database: 7,932,708
effective search space: 22973122368
effective search space used: 22973122368
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.20
Homology vs DNA
Query= Contig-U15834-1 (Contig-U15834-1Q) /CSM_Contig/Contig-U15834-1Q.Seq.d
(2913 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 765 0.0 2
(BJ390076) Dictyostelium discoideum cDNA clone:dds21h06, 5' ... 765 0.0 3
(BJ425083) Dictyostelium discoideum cDNA clone:ddv54g15, 5' ... 535 0.0 3
(BJ373990) Dictyostelium discoideum cDNA clone:ddc5a20, 3' e... 490 0.0 4
(BJ382410) Dictyostelium discoideum cDNA clone:ddc44l14, 3' ... 628 0.0 3
(BJ360364) Dictyostelium discoideum cDNA clone:ddc5a20, 5' e... 765 0.0 2
(BJ442196) Dictyostelium discoideum cDNA clone:ddv49j04, 3' ... 579 0.0 3
(BJ400544) Dictyostelium discoideum cDNA clone:dds13o13, 3' ... 373 0.0 3
(BJ443914) Dictyostelium discoideum cDNA clone:ddv54g15, 3' ... 398 e-150 4
(AC138317) Mus musculus chromosome 8, clone RP23-271F20, com... 60 5e-04 1
(AC144411) Homo sapiens BAC clone GS1-146C24 from 7, complet... 60 5e-04 1
(AC068790) Homo sapiens 12 BAC RP11-214K3 (Roswell Park Canc... 60 5e-04 1
(AC055854) Homo sapiens chromosome 8, clone RP11-459E5, comp... 60 5e-04 1
(AC118627) Mus musculus chromosome 15, clone RP24-91E8, comp... 58 0.002 1
(AC025839) Homo sapiens chromosome 8, clone RP11-370K2, comp... 58 0.002 1
(AL691472) Mouse DNA sequence from clone RP23-217C12 on chro... 56 0.008 1
(AZ496147) 1M0332I17F Mouse 10kb plasmid UUGC1M library Mus ... 56 0.008 1
(AC025484) Homo sapiens clone RP11-252P19, WORKING DRAFT SEQ... 38 0.020 2
(AL591962) Human DNA sequence from clone RP11-346O16 on chro... 38 0.021 2
(AC116875) Mus musculus chromosome 8, clone RP24-426B21, com... 54 0.031 1
(AC128836) Rattus norvegicus clone CH230-485K2, WORKING DRAF... 54 0.031 1
(AC112634) Rattus norvegicus clone CH230-122C23, WORKING DRA... 54 0.031 1
(AC111391) Rattus norvegicus clone CH230-145D10, WORKING DRA... 54 0.031 1
(AC180304) Strongylocentrotus purpuratus clone R3-3119N03, W... 54 0.031 1
(AC179522) Strongylocentrotus purpuratus clone R3-6D16, WORK... 54 0.031 1
(AC145825) Pan troglodytes clone rp43-37f24, WORKING DRAFT S... 42 0.072 2
(AC214902) Pan troglodytes clone rp43-10a18, WORKING DRAFT S... 42 0.072 2
(AC024898) Homo sapiens chromosome 3 clone RP11-508A20, WORK... 42 0.073 2
(AC009716) Homo sapiens chromosome 18, clone RP11-504I13, co... 42 0.073 2
(AP001445) Homo sapiens genomic DNA, chromosome 18q23 clone:... 42 0.074 2
(AC145451) Pan troglodytes clone rp43-5b8, WORKING DRAFT SEQ... 42 0.074 2
(AC148477) Homo sapiens 12 BAC RP13-895J2 (Roswell Park Canc... 46 0.074 2
(AC178396) Strongylocentrotus purpuratus clone R3-3110L19, W... 52 0.074 2
(G67741) D4Mon22 RPCI-23 mouse BAC clone 118E21 Mus musculus... 52 0.12 1
(AL732387) Mouse DNA sequence from clone RP23-80J21 on chrom... 52 0.12 1
(AL627214) Mouse DNA sequence from clone RP23-357K18 on chro... 52 0.12 1
(AL627204) Mouse DNA sequence from clone RP23-118E21 on chro... 52 0.12 1
(AC153386) Mus musculus 6 BAC RP23-198D7 (Roswell Park Cance... 52 0.12 1
(AC124689) Mus musculus BAC clone RP24-147N6 from chromosome... 52 0.12 1
(AC111460) Rattus norvegicus BAC CH230-211F21 (Children's H... 52 0.12 1
(AC188419) Pan troglodytes BAC clone CH251-305M6 from chromo... 52 0.12 1
(AC186397) Pan troglodytes BAC clone CH251-2O12 from chromos... 52 0.12 1
(CR380953) Candida glabrata strain CBS138 chromosome G compl... 52 0.12 1
(DD331557) A method for evaluating risk of hypertension. 52 0.12 1
(AF012918) Bos taurus minisatellite VNTR repeat region. 52 0.12 1
(AM910994) Plasmodium knowlesi strain H chromosome 12, compl... 52 0.12 1
(AC151592) Nematostella vectensis clone JGIAFIN-297A9, compl... 52 0.12 1
(AP006275) Homo sapiens genomic DNA, chromosome 8q24.3, clon... 52 0.12 1
(AC196636) Homo sapiens chromosome 19 PCR product, complete ... 52 0.12 1
(AC137896) Homo sapiens chromosome 17, clone RP11-765O14, co... 52 0.12 1
(AC136285) Homo sapiens chromosome 16 clone RP11-899L11, com... 52 0.12 1
(AC133883) Homo sapiens chromosome 8, clone RP11-945N8, comp... 52 0.12 1
(AC126754) Homo sapiens chromosome 19 clone P1-103340, compl... 52 0.12 1
(AC100804) Homo sapiens chromosome 8, clone CTD-3119E5, comp... 52 0.12 1
(AC093106) Homo sapiens chromosome 7 clone CTD-2502H6, compl... 52 0.12 1
(AC084727) Homo sapiens chromosome 10 clone RP11-507P23, com... 52 0.12 1
(AC060234) Homo sapiens chromosome 10 clone RP11-523O18, com... 52 0.12 1
(AC025752) Homo sapiens chromosome 5 clone CTC-430J12, compl... 52 0.12 1
(AC008888) Homo sapiens chromosome 19 clone CTD-2221F12, com... 52 0.12 1
(AC008381) Homo sapiens chromosome 5 clone CTC-216O13, compl... 52 0.12 1
(AC007240) Homo sapiens BAC clone RP11-83M8 from 2, complete... 52 0.12 1
(AC140145) Homo sapiens chromosome 5 clone RP11-244N5, WORKI... 52 0.12 1
(AC139910) Rattus norvegicus clone CH230-321E12, WORKING DRA... 52 0.12 1
(AC136867) Rattus norvegicus clone CH230-385B18, *** SEQUENC... 52 0.12 1
(AC134134) Rattus norvegicus clone CH230-175I17, *** SEQUENC... 52 0.12 1
(AC130771) Rattus norvegicus clone CH230-9K7, WORKING DRAFT ... 52 0.12 1
(AC128413) Rattus norvegicus clone CH230-164B4, *** SEQUENCI... 52 0.12 1
(AC127623) Rattus norvegicus clone CH230-12J22, *** SEQUENCI... 52 0.12 1
(AC126966) Rattus norvegicus clone CH230-163I16, WORKING DRA... 52 0.12 1
(AC125597) Rattus norvegicus clone CH230-341P19, *** SEQUENC... 52 0.12 1
(AC123416) Rattus norvegicus clone CH230-187C16, *** SEQUENC... 52 0.12 1
(AC119540) Rattus norvegicus clone CH230-490H7, *** SEQUENCI... 52 0.12 1
(AC118503) Rattus norvegicus clone CH230-149H1, WORKING DRAF... 52 0.12 1
(AC117349) Rattus norvegicus clone CH230-329M4, WORKING DRAF... 52 0.12 1
(AC111958) Rattus norvegicus clone CH230-130D10, *** SEQUENC... 52 0.12 1
(AC110455) Rattus norvegicus clone CH230-276C17, WORKING DRA... 52 0.12 1
(AC103490) Rattus norvegicus clone CH230-15J23, WORKING DRAF... 52 0.12 1
(AC100470) Mus musculus clone RP23-139J18, LOW-PASS SEQUENCE... 52 0.12 1
(AC097081) Rattus norvegicus clone CH230-49G13, WORKING DRAF... 52 0.12 1
(AC095911) Rattus norvegicus clone CH230-10M7, WORKING DRAFT... 52 0.12 1
(AC095360) Rattus norvegicus clone CH230-1H21, *** SEQUENCIN... 52 0.12 1
(AC095173) Rattus norvegicus clone CH230-8O21, WORKING DRAFT... 52 0.12 1
(AC094741) Rattus norvegicus clone CH230-5C12, *** SEQUENCIN... 52 0.12 1
(CU914730) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.12 1
(AC091963) Homo sapiens chromosome 5 clone RP11-466K17, WORK... 52 0.12 1
(AC040922) Homo sapiens chromosome 19 clone RP11-699H21 map ... 52 0.12 1
(BX649519) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 52 0.12 1
(AF389853) Mus musculus strain C57BL/6J chromosome 4 clone R... 52 0.12 1
(AC207299) Homo sapiens chromosome 17 clone ABC9-45392900D8,... 52 0.12 1
(AC202236) Saimiri boliviensis boliviensis clone CH254-197P1... 52 0.12 1
(AC201609) Strongylocentrotus purpuratus clone R3-5N23, WORK... 52 0.12 1
(AC201508) Strongylocentrotus purpuratus clone R3-3082B23, W... 52 0.12 1
(AC181040) Strongylocentrotus purpuratus clone R3-3029B16, W... 52 0.12 1
(AC177640) Strongylocentrotus purpuratus clone R3-1020F19, W... 52 0.12 1
(AC176497) Strongylocentrotus purpuratus clone R3-3072G14, W... 52 0.12 1
(AC024438) Homo sapiens clone RP11-650K16, WORKING DRAFT SEQ... 52 0.12 1
(AC010257) Homo sapiens chromosome 5 clone CTC-450O20, WORKI... 52 0.12 1
(AL300993) Tetraodon nigroviridis genome survey sequence T7 ... 52 0.12 1
(AL198074) Tetraodon nigroviridis genome survey sequence PUC... 52 0.12 1
(DH765767) Rattus norvegicus DNA, BAC clone: RNB1-348N21, 5'... 52 0.12 1
(DE931579) Macropus eugenii DNA, BAC clone: MEB1-122K09_F, 5... 52 0.12 1
(CU001518) Equus caballus GSS, BAC clone CH241-67B24, T7 end... 52 0.12 1
(CE302720) tigr-gss-dog-17000360214802 Dog Library Canis lup... 52 0.12 1
(AM740323) Cucumis melo subsp. melo EST, clone 46d_40-B05-M13R. 52 0.12 1
(AM735924) Cucumis melo subsp. melo EST, clone CI_40-C03-M13R. 52 0.12 1
(AM730409) Cucumis melo subsp. melo EST, clone CI_03-C01-M13R. 52 0.12 1
(AM726281) Cucumis melo subsp. melo EST, clone HS_30-B03-M13R. 52 0.12 1
(AM717244) Cucumis melo subsp. melo EST, clone PS_11-D08-M13R. 52 0.12 1
(AM716635) Cucumis melo subsp. agrestis EST, clone AI_32-G01... 52 0.12 1
(AM716540) Cucumis melo subsp. agrestis EST, clone AI_36-H04... 52 0.12 1
(AM714640) Cucumis melo subsp. agrestis EST, clone AI_03-G06... 52 0.12 1
(AM714305) Cucumis melo subsp. agrestis EST, clone AI_05-D03... 52 0.12 1
(BM941483) UI-M-BZ1-bls-a-10-0-UI.r1 NIH_BMAP_MHI2_S1 Mus mu... 52 0.12 1
(EY384106) CAXA4969.fwd CAXA Helobdella robusta Subtracted L... 44 0.14 3
(AC111539) Rattus norvegicus clone CH230-158A12, WORKING DRA... 36 0.27 2
(AC156962) Bos taurus clone CH240-68L19, WORKING DRAFT SEQUE... 36 0.27 2
(AL590365) Human DNA sequence from clone RP11-455B2 on chrom... 36 0.27 2
(DD467325) Genes associated with HCV-positive hepatocellular... 34 0.27 2
(CS351476) Sequence 860 from Patent WO2006013561. 34 0.27 2
(Z97353) Human DNA sequence from clone RP1-90L6 on chromosom... 34 0.27 2
(AC180779) Strongylocentrotus purpuratus clone R3-3076A23, W... 46 0.27 2
(AC139647) Rattus norvegicus clone CH230-397K6, WORKING DRAF... 38 0.27 2
(AC184198) Strongylocentrotus purpuratus clone R3-3032M21, W... 36 0.27 2
(AC194769) Macaca mulatta clone CH250-205L19, WORKING DRAFT ... 36 0.27 2
(EF444959) Homo sapiens genomic sequence. 36 0.27 2
(Z95394) Human DNA sequence *** SEQUENCING CANCELLED *** fro... 34 0.29 2
(AC219852) Bos taurus clone CH240-320B13, WORKING DRAFT SEQU... 36 0.43 5
(CP000382) Clostridium novyi NT, complete genome. 38 0.43 23
(AB211230) Oncorhynchus mykiss Ompum1 mRNA for pumilio-1, pa... 50 0.48 1
(AC158530) Mus musculus BAC clone RP23-255H12 from chromosom... 50 0.48 1
(AC140243) Mus musculus BAC clone RP23-470F3 from 9, complet... 50 0.48 1
(AC118543) Mus musculus strain C57BL/6J clone rp23-254b17 ma... 50 0.48 1
(AC197820) Macaca mulatta BAC CH250-426H12 (Children's Hosp... 50 0.48 1
(AM489370) Vitis vinifera contig VV78X005196.13, whole genom... 50 0.48 1
(AL358253) Human DNA sequence from clone RP11-460G22 on chro... 50 0.48 1
(AL035419) Human DNA sequence from clone RP5-1100H13 on chro... 50 0.48 1
(AC025278) Homo sapiens chromosome 19 clone RP11-1137G4, com... 50 0.48 1
(AC020895) Homo sapiens chromosome 19 clone CTC-312O10, comp... 50 0.48 1
(AC152513) Bos taurus clone CH240-15E23, WORKING DRAFT SEQUE... 50 0.48 1
(AC135274) Rattus norvegicus clone CH230-375K5, *** SEQUENCI... 50 0.48 1
(AC121427) Rattus norvegicus clone CH230-275P21, *** SEQUENC... 50 0.48 1
(AC099452) Rattus norvegicus clone CH230-62L13, WORKING DRAF... 50 0.48 1
(AL360079) Human DNA sequence *** SEQUENCING CANCELLED *** f... 50 0.48 1
(AC201515) Strongylocentrotus purpuratus clone R3-3085L22, W... 50 0.48 1
(AC197386) Pongo abelii chromosome UNKNOWN clone CH276-5G2, ... 50 0.48 1
(AC177775) Strongylocentrotus purpuratus clone R3-1002L5, WO... 50 0.48 1
(AC176239) Strongylocentrotus purpuratus clone R3-3061D02, W... 50 0.48 1
(AC173089) Bos taurus clone CH240-282O4, WORKING DRAFT SEQUE... 50 0.48 1
(AC168554) Strongylocentrotus purpuratus clone R3-3091G16, W... 50 0.48 1
(AC164035) Bos taurus clone CH240-132A14, WORKING DRAFT SEQU... 50 0.48 1
(AC163584) Bos taurus clone CH240-130F2, WORKING DRAFT SEQUE... 50 0.48 1
(AK085307) Mus musculus 0 day neonate kidney cDNA, RIKEN ful... 50 0.48 1
(EI861253) CAH1-37K9TR CAA1Ba Cicer arietinum genomic clone ... 50 0.48 1
(DT756041) EST1189890 Aquilegia cDNA library Aquilegia formo... 50 0.48 1
(DR952380) EST1143919 Aquilegia cDNA library Aquilegia formo... 50 0.48 1
(BB497544) Mus musculus 0 day neonate kidney cDNA, RIKEN ful... 50 0.48 1
(BM416306) OP21396 Mixed Stage EST's from Globodera pallida,... 38 0.50 2
(EB717815) PMAO-aab19a12.g1 Lamprey_EST_Embryo Petromyzon ma... 38 0.66 2
(DT171248) JGI_ANNO42545.rev ANNO Pimephales promelas Whole ... 40 0.88 2
(AC161817) Mus musculus chromosome 16 clone RP23-280D21, WOR... 36 0.90 2
(AM469170) Vitis vinifera contig VV78X225917.7, whole genome... 42 0.93 3
(AL670959) Mouse DNA sequence from clone RP23-94L5 on chromo... 36 0.97 2
(AC149980) Strongylocentrotus purpuratus clone R3-32A6, WORK... 36 0.98 2
(AJ226509) Ciona intestinalis genomic fragment, clone 16B8. 38 0.98 2
(FB676006) Sequence 9 from Patent WO2007118704. 36 0.98 2
(FB676002) Sequence 5 from Patent WO2007118704. 36 0.98 2
(FB675999) Sequence 2 from Patent WO2007118704. 36 0.98 2
(FB332203) Sequence 10 from Patent WO2007115213. 36 0.98 2
(FB332197) Sequence 4 from Patent WO2007115213. 36 0.98 2
(FB332194) Sequence 1 from Patent WO2007115213. 36 0.98 2
(CS448326) Sequence 10 from Patent WO2006117381. 36 0.98 2
(CS448320) Sequence 4 from Patent WO2006117381. 36 0.98 2
(AC153591) Mus musculus 6 BAC RP23-301O22 (Roswell Park Canc... 38 0.99 2
(AC200973) Strongylocentrotus purpuratus clone R3-112M5, WOR... 34 0.99 2
(AC122352) Mus musculus BAC clone RP23-389C11 from chromosom... 36 0.99 2
(AC198304) Macaca mulatta clone CH250-65C9, WORKING DRAFT SE... 48 0.99 2
(AC200983) Strongylocentrotus purpuratus clone R3-12A7, WORK... 36 0.99 2
(DT121627) JGI_ANNO7313.rev ANNO Pimephales promelas Whole (... 40 0.99 2
(EA116531) Sequence 715 from patent US 7205146. 46 0.99 2
(AC173845) Strongylocentrotus purpuratus clone R3-1117C12, W... 36 0.99 2
(AC167293) Callithrix jacchus clone CH259-136G3, WORKING DRA... 34 0.99 2
(AC201854) Macaca mulatta chromosome 14 clone CH250-337D6, W... 34 1.00 2
(AC184216) Strongylocentrotus purpuratus clone R3-8G11, WORK... 36 1.00 2
(AC093740) Homo sapiens BAC clone RP11-24G22 from 2, complet... 34 1.00 2
(AC170246) Bos taurus clone CH240-217C9, WORKING DRAFT SEQUE... 36 1.00 2
(AC181464) Strongylocentrotus purpuratus clone R3-51D5, WORK... 38 1.0 2
(AC092442) Homo sapiens BAC clone RP11-488I16 from 4, comple... 36 1.0 2
(AC168185) Callithrix jacchus clone CH259-192I22, WORKING DR... 34 1.0 2
(AC111170) Homo sapiens chromosome 17, clone RP11-75C10, com... 36 1.0 2
(AC172411) Strongylocentrotus purpuratus clone R3-14B7, WORK... 36 1.0 2
(CU207386) Mouse DNA sequence from clone DN-202E11 on chromo... 36 1.0 2
(AC181551) Strongylocentrotus purpuratus clone R3-1109N2, WO... 34 1.0 2
(AC180484) Strongylocentrotus purpuratus clone R3-3100P21, W... 36 1.0 2
(AC210714) Macaca mulatta BAC CH250-462E2 (Children's Hospi... 36 1.0 2
(AC201294) Strongylocentrotus purpuratus clone R3-16G8, WORK... 38 1.0 2
(AC134480) Rattus norvegicus clone CH230-115H22, *** SEQUENC... 36 1.0 2
(AC079031) Homo sapiens 12 BAC RP11-503G7 (Roswell Park Canc... 46 1.0 2
(AC015635) Homo sapiens clone RP11-45M6, LOW-PASS SEQUENCE S... 38 1.0 2
(AL162716) Human DNA sequence from clone RP11-339I24 on chro... 36 1.1 5
(FD722133) CAAA5543.rev CAAA Petromyzon marinus Petromyzon m... 38 1.2 2
(EA116606) Sequence 790 from patent US 7205146. 46 1.2 2
(CE438326) tigr-gss-dog-17000335895076 Dog Library Canis lup... 48 1.3 2
(CN980409) 48360_126_1_H04 Fundulus Heteroclitus Liver Fundu... 36 1.6 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 44 1.8 12
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 38 1.8 23
(AC130110) Rattus norvegicus clone CH230-55M4, *** SEQUENCIN... 44 1.9 6
(CU210933) Mouse DNA sequence from clone DN-117C24 on chromo... 48 1.9 1
(AL606982) Mouse DNA sequence from clone RP23-354C15 on chro... 48 1.9 1
(AC159616) Mus musculus BAC clone RP24-497G20 from chromosom... 48 1.9 1
(AC145591) Mus musculus BAC clone RP24-176N2 from chromosome... 48 1.9 1
(AC116107) Mus musculus chromosome 1, clone RP23-28F18, comp... 48 1.9 1
(AC113104) Mus musculus chromosome 18, clone RP23-321L15, co... 48 1.9 1
(CR925829) C.jacchus DNA sequence from clone CH259-147B13. 48 1.9 1
(BS000126) Pan troglodytes chromosome 22 clone:PTB-128A24, m... 48 1.9 1
(FJ096093) Pinus taeda isolate 6064 anonymous locus 2_4412_0... 48 1.9 1
(FJ096092) Pinus taeda isolate 6060 anonymous locus 2_4412_0... 48 1.9 1
(FJ096091) Pinus taeda isolate 6066 anonymous locus 2_4412_0... 48 1.9 1
(FJ096090) Pinus taeda isolate 6058 anonymous locus 2_4412_0... 48 1.9 1
(FJ096089) Pinus taeda isolate 6053 anonymous locus 2_4412_0... 48 1.9 1
(FJ096088) Pinus taeda isolate 6051 anonymous locus 2_4412_0... 48 1.9 1
(FJ096087) Pinus taeda isolate 6067 anonymous locus 2_4412_0... 48 1.9 1
(FJ096086) Pinus taeda isolate 6061 anonymous locus 2_4412_0... 48 1.9 1
(FJ096085) Pinus taeda isolate 6068 anonymous locus 2_4412_0... 48 1.9 1
(FJ096084) Pinus taeda isolate 6065 anonymous locus 2_4412_0... 48 1.9 1
(FJ096083) Pinus taeda isolate 6052 anonymous locus 2_4412_0... 48 1.9 1
(FJ096082) Pinus taeda isolate 6054 anonymous locus 2_4412_0... 48 1.9 1
(FJ096081) Pinus taeda isolate 6056 anonymous locus 2_4412_0... 48 1.9 1
(FJ096080) Pinus taeda isolate 6055 anonymous locus 2_4412_0... 48 1.9 1
(FJ096079) Pinus taeda isolate 6062 anonymous locus 2_4412_0... 48 1.9 1
(FJ096078) Pinus taeda isolate 6059 anonymous locus 2_4412_0... 48 1.9 1
(FJ096077) Pinus taeda isolate 6057 anonymous locus 2_4412_0... 48 1.9 1
(FJ096076) Pinus taeda isolate 6063 anonymous locus 2_4412_0... 48 1.9 1
(AM437056) Vitis vinifera contig VV78X019509.6, whole genome... 48 1.9 1
(AC216688) Populus trichocarpa clone POP098-A10, complete se... 48 1.9 1
(AC184070) Populus trichocarpa clone Pop1-31N15, complete se... 48 1.9 1
(EA117032) Sequence 1216 from patent US 7205146. 48 1.9 1
(CQ341825) Sequence 15919 from Patent WO0157275. 48 1.9 1
(CQ304565) Sequence 15670 from Patent WO0186003. 48 1.9 1
(CQ267545) Sequence 15806 from Patent WO0157277. 48 1.9 1
(CQ229410) Sequence 16249 from Patent WO0157273. 48 1.9 1
(CQ206011) Sequence 8288 from Patent WO0157271. 48 1.9 1
(CQ181650) Sequence 13046 from Patent WO0157274. 48 1.9 1
(CQ146205) Sequence 16227 from Patent WO0157276. 48 1.9 1
(CQ107542) Sequence 16401 from Patent WO0157272. 48 1.9 1
(CQ076557) Sequence 12357 from Patent WO0157278. 48 1.9 1
(CQ057281) Sequence 8101 from Patent WO0157270. 48 1.9 1
(AX647245) Sequence 1437 from Patent EP1270724. 48 1.9 1
(AM910992) Plasmodium knowlesi strain H chromosome 10, compl... 48 1.9 1
(BX284661) Human DNA sequence from clone RP1-293L6 on chromo... 48 1.9 1
(AL353658) Human DNA sequence from clone RP11-358D14 on chro... 48 1.9 1
(AL049749) Human DNA sequence from clone RP1-293L6 on chromo... 48 1.9 1
(AC147769) Homo sapiens chromosome 16 clone PCR-16A01, compl... 48 1.9 1
(AC141001) Homo sapiens X BAC RP11-1051N9 (Roswell Park Canc... 48 1.9 1
(AC079460) Homo sapiens 12 BAC RP11-297L6 (Roswell Park Canc... 48 1.9 1
(AC069513) Homo sapiens 3 BAC RP11-171N2 (Roswell Park Cance... 48 1.9 1
(AC026358) Homo sapiens 12 BAC RP11-522N14 (Roswell Park Can... 48 1.9 1
(AC019043) Homo sapiens BAC clone RP11-11B21 from 7, complet... 48 1.9 1
(AC012441) Homo sapiens BAC clone CTD-2021A8 from 7, complet... 48 1.9 1
(AC008514) Homo sapiens chromosome 5 clone CTC-455F18, compl... 48 1.9 1
(AC143228) Macaca mulatta clone CH250-270O12, WORKING DRAFT ... 48 1.9 1
(AC141935) Rattus norvegicus clone CH230-473H18, WORKING DRA... 48 1.9 1
(AC135645) Rattus norvegicus clone CH230-338I8, WORKING DRAF... 48 1.9 1
(AC135455) Rattus norvegicus clone CH230-4B13, WORKING DRAFT... 48 1.9 1
(AC128360) Rattus norvegicus clone CH230-424B10, WORKING DRA... 48 1.9 1
(AC127210) Rattus norvegicus clone CH230-82K9, *** SEQUENCIN... 48 1.9 1
(AC126697) Rattus norvegicus clone CH230-6K16, WORKING DRAFT... 48 1.9 1
(AC125746) Rattus norvegicus clone CH230-137I10, *** SEQUENC... 48 1.9 1
(AC125696) Rattus norvegicus clone CH230-146L11, WORKING DRA... 48 1.9 1
(AC125564) Rattus norvegicus clone CH230-9K9, WORKING DRAFT ... 48 1.9 1
(AC121684) Rattus norvegicus clone CH230-42I15, *** SEQUENCI... 48 1.9 1
(AC120819) Rattus norvegicus clone CH230-74L16, *** SEQUENCI... 48 1.9 1
(AC120107) Rattus norvegicus chromosome 1 clone RP32-274G9 m... 48 1.9 1
(AC116262) Rattus norvegicus clone CH230-200M4, *** SEQUENCI... 48 1.9 1
(AC112775) Homo sapiens chromosome 3 clone RP11-436M6, *** S... 48 1.9 1
(AC110825) Rattus norvegicus clone CH230-275J14, *** SEQUENC... 48 1.9 1
(AC109838) Rattus norvegicus clone CH230-270M19, WORKING DRA... 48 1.9 1
(AC109763) Rattus norvegicus clone CH230-312I20, *** SEQUENC... 48 1.9 1
(AC109128) Homo sapiens chromosome 3 clone RP11-423B7, WORKI... 48 1.9 1
(AC106328) Rattus norvegicus clone CH230-229P13, WORKING DRA... 48 1.9 1
(AC105538) Rattus norvegicus clone CH230-223H21, WORKING DRA... 48 1.9 1
(AC102958) Rattus norvegicus clone CH230-38F21, WORKING DRAF... 48 1.9 1
(AC094561) Rattus norvegicus clone CH230-4K2, *** SEQUENCING... 48 1.9 1
(CU972407) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.9 1
(AF276758) Homo sapiens chromosome 8 clone RP11-909N17 map 8... 48 1.9 1
(AC233280) Homo sapiens chromosome 3 clone RP11-141C7, WORKI... 48 1.9 1
(AC232270) Homo sapiens chromosome 3 clone RP11-697E15, WORK... 48 1.9 1
(AC232269) Homo sapiens chromosome 3 clone RP11-1401K23, WOR... 48 1.9 1
(AC210433) Homo sapiens chromosome UNK clone ABC9-43877600K3... 48 1.9 1
(AC204863) Zea mays chromosome 7 clone CH201-7H14; ZMMBBc000... 48 1.9 1
(AC197716) Zea mays chromosome 1 clone CH201-42N20; ZMMBBc00... 48 1.9 1
(AC184409) Strongylocentrotus purpuratus clone R3-3097C9, WO... 48 1.9 1
(AC181440) Strongylocentrotus purpuratus clone R3-50L23, WOR... 48 1.9 1
(AC179767) Strongylocentrotus purpuratus clone R3-1016H24, W... 48 1.9 1
(AC178202) Strongylocentrotus purpuratus clone R3-3085B05, W... 48 1.9 1
(AC165883) Bos taurus clone CH240-165H22, WORKING DRAFT SEQU... 48 1.9 1
(AC163604) Bos taurus clone CH240-96H14, WORKING DRAFT SEQUE... 48 1.9 1
(BH270572) CH230-107M14.TV CHORI-230 Segment 1 Rattus norveg... 48 1.9 1
(EK455975) 1095468239714 Global-Ocean-Sampling_GS-32-01-01-1... 48 1.9 1
(EK453075) 1095467620108 Global-Ocean-Sampling_GS-32-01-01-1... 48 1.9 1
(EK316123) 1095462413273 Global-Ocean-Sampling_GS-31-01-01-1... 48 1.9 1
(CC520779) CH240_368O23.TARBAC13P2 CHORI-240 Bos taurus geno... 48 1.9 1
(CC127468) NDL.34F15.SP6 Notre Dame Liverpool Aedes aegypti ... 48 1.9 1
(BZ243402) CH230-419C24.TJ CHORI-230 Segment 2 Rattus norveg... 48 1.9 1
(EG806307) EST_ssal_evd_26996 ssalevd thymus Salmo salar cDN... 48 1.9 1
(EG806306) EST_ssal_evd_26995 ssalevd thymus Salmo salar cDN... 48 1.9 1
(EG782463) EST_ssal_evd_39001 ssalevd thymus Salmo salar cDN... 48 1.9 1
(EG782462) EST_ssal_evd_39000 ssalevd thymus Salmo salar cDN... 48 1.9 1
(EE640006) CHEM11254.b1_L05.ab1 CHE(LMS) serpentine sunflowe... 48 1.9 1
(DV737779) AL01006A2C07.f1 AL01-normalized and subtracted li... 48 1.9 1
(CT579328) Pinus pinaster bud EST. 48 1.9 1
(CT578387) Pinus pinaster bud EST. 48 1.9 1
(CF669957) RTCNT1_47_D09.b1_A029 Root control Pinus taeda cD... 48 1.9 1
(CB517837) ssalrgb549336 mixed_tissue Salmo salar cDNA, mRNA... 48 1.9 1
(GE558769) CCHT16852.b1_H14.ab1 CCHT Niger Seed Guizotia aby... 48 1.9 1
(FM241520) Mycosphaerella graminicola EST, clone 26473. 48 1.9 1
(FM230510) Mycosphaerella graminicola EST, clone 15463. 48 1.9 1
(FM229482) Mycosphaerella graminicola EST, clone 14435. 48 1.9 1
(FM218987) Mycosphaerella graminicola EST, clone 03940. 48 1.9 1
(FM217042) Mycosphaerella graminicola EST, clone 01995. 48 1.9 1
(FG576380) BN24DYSC_UP_066_F05_6FEB2008_037 BN24DYSC Brassic... 48 1.9 1
(FG574940) BN24DYSC_UP_049_F12_6FEB2008_086 BN24DYSC Brassic... 48 1.9 1
(EY938807) RS2DO01TF RS2(RS) Raphanus sativus cDNA 5', mRNA ... 48 1.9 1
(CN969802) 17299_123-015-32 Fundulus Heteroclitus Liver Fund... 36 2.0 2
(CN969713) 17210_123-014-23 Fundulus Heteroclitus Liver Fund... 36 2.3 2
(Z87068) F.rubripes GSS sequence, clone 021G08aC12. 36 2.5 2
(CN974098) 21627_100291_4 Fundulus Heteroclitus Liver Fundul... 36 2.5 2
(CN968265) 15762_100306_28 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN968264) 15761_100306_28 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN967524) 15021_100315_25 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN967272) 14769_100313_52 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN966957) 14454_100310_36 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN966599) 14096_100293_27 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN966363) 13860_100291_4 Fundulus Heteroclitus Liver Fundul... 36 2.5 2
(CN965863) 13360_100284_19 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN964148) 11645_100253_26 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN963943) 11440_100250_28 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN963824) 11321_100204_95 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN963226) 10723_100242_87 Fundulus Heteroclitus Liver Fundu... 36 2.5 2
(CN961780) 9280_1002_11 Fundulus Heteroclitus Heart Fundulus... 36 2.5 2
(CN961651) 9151_1001_82 Fundulus Heteroclitus Heart Fundulus... 36 2.5 2
(CN952768) 265_8-86 Fundulus Heteroclitus Heart Fundulus het... 42 2.6 2
(CN956165) 3665_108-94 Fundulus Heteroclitus Liver Fundulus ... 36 2.6 2
(CN956146) 3646_108-74 Fundulus Heteroclitus Liver Fundulus ... 36 2.6 2
(CN955893) 3393_105-72 Fundulus Heteroclitus Liver Fundulus ... 36 2.6 2
(CN955853) 3352_105-23 Fundulus Heteroclitus Liver Fundulus ... 36 2.6 2
(CN955594) 3093_102-29 Fundulus Heteroclitus Liver Fundulus ... 36 2.6 2
(EW758310) sb_009_02N13_m13reverselong Onychiurus arcticus d... 36 2.6 2
(AL018519) F.rubripes GSS sequence, clone 154E17aC12. 36 2.6 2
(AL011359) F.rubripes GSS sequence, clone 016E10aC6. 36 2.7 2
(CU829919) A BAC library has been constructed from PN40024 g... 42 2.8 2
(AC114754) Homo sapiens chromosome 4 clone RP11-274B16, WORK... 46 2.9 3
(CA602623) wr1.pk0019.e7 wr1 Triticum aestivum cDNA clone wr... 36 3.0 2
(CN251992) EST017923 Mycelium and yeast cells from Paracocci... 40 3.1 2
(AY588378) Humulus lupulus clone HlCAG4 microsatellite seque... 36 3.2 2
(AC110959) Rattus norvegicus clone CH230-47L7, *** SEQUENCIN... 46 3.5 2
(AC106987) Rattus norvegicus clone CH230-220P2, *** SEQUENCI... 34 3.5 2
(Z90754) F.rubripes GSS sequence, clone 133B16aC7. 36 3.5 2
(AC110635) Rattus norvegicus clone CH230-262K9, *** SEQUENCI... 34 3.5 2
(AL390201) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 3.5 2
(AC106289) Rattus norvegicus clone CH230-70G1, *** SEQUENCIN... 34 3.5 2
(AC098981) Rattus norvegicus clone CH230-112J19, *** SEQUENC... 34 3.5 2
(AC158625) Mus musculus 6 BAC RP23-78J15 (Roswell Park Cance... 46 3.5 2
(AC132557) Rattus norvegicus clone CH230-163F14, WORKING DRA... 34 3.6 2
(AC094207) Rattus norvegicus clone CH230-3A16, *** SEQUENCIN... 46 3.6 2
(AC097683) Rattus norvegicus clone CH230-81E12, WORKING DRAF... 34 3.6 2
(AC134734) Rattus norvegicus clone CH230-148E7, WORKING DRAF... 34 3.6 2
(AC106069) Rattus norvegicus clone CH230-129B22, WORKING DRA... 34 3.6 2
(AC117299) Rattus norvegicus clone CH230-150B14, *** SEQUENC... 34 3.6 2
(AC173783) Bos taurus clone CH240-1G11, WORKING DRAFT SEQUEN... 34 3.6 2
(AC162622) Bos taurus clone CH240-125A15, WORKING DRAFT SEQU... 34 3.6 2
(AC178785) Strongylocentrotus purpuratus clone R3-29P4, WORK... 46 3.6 2
(AC188236) Saimiri boliviensis boliviensis clone CH254-282A1... 36 3.6 2
(AC125948) Rattus norvegicus clone CH230-275A12, WORKING DRA... 36 3.6 2
(AC061709) Homo sapiens 12 BAC RP11-417O18 (Roswell Park Can... 36 3.6 2
(AC188220) Callithrix jacchus clone CH259-80M8, WORKING DRAF... 34 3.6 2
(AC183533) Pan troglodytes BAC clone CH251-551K15 from chrom... 36 3.6 2
(AC173561) Strongylocentrotus purpuratus clone R3-14C2, WORK... 34 3.6 2
(AC198055) Pongo abelii BAC clone CH276-116C6 from chromosom... 32 3.6 2
(CT954307) N.leucogenys DNA sequence from clone CH271-270A22. 34 3.6 2
(AC108448) Homo sapiens chromosome 11, clone CTD-2544D21, co... 36 3.6 2
(AC193032) Pan troglodytes BAC clone CH251-656E15 from chrom... 34 3.6 2
(CN982714) 51234_126_031_H03 Fundulus Heteroclitus Liver Fun... 36 3.6 2
(AC027601) Homo sapiens chromosome 17, clone RP11-455O6, com... 46 3.6 2
(AC197615) MACACA MULATTA BAC clone CH250-38N17 from chromos... 34 3.6 2
(AC146153) Pan troglodytes chromosome UNK clone RP43-37C16, ... 34 3.6 2
(AC176383) Strongylocentrotus purpuratus clone R3-3045D23, W... 34 3.6 2
(CU928461) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.6 2
(AC132684) Mus musculus BAC clone RP23-277L20 from 9, comple... 34 3.6 2
(CN980975) 49031_126_8_H03 Fundulus Heteroclitus Liver Fundu... 36 3.6 2
(AC016182) Homo sapiens chromosome 17, clone RP11-559N14, co... 36 3.6 2
(AC114814) Homo sapiens BAC clone RP11-1345D17 from 2, compl... 36 3.6 2
(AC136008) Mus musculus BAC clone RP24-68J1 from 6, complete... 36 3.6 2
(AC172627) Bos taurus clone CH240-30O14, WORKING DRAFT SEQUE... 34 3.6 2
(AC016765) Homo sapiens chromosome 11 clone RP11-555F1, WORK... 36 3.6 2
(CU463084) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.6 2
(AF265340) Homo sapiens chromosome 16 clone BAC 504N19, comp... 36 3.6 2
(AC151479) Pan troglodytes BAC clone CH251-656P8 from chromo... 34 3.6 2
(CU929437) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.6 2
(AC124632) Mus musculus chromosome 19, clone RP23-445I14, co... 36 3.6 2
(AC021593) Homo sapiens chromosome 17, clone RP11-153A23, co... 34 3.6 2
(CU329692) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.6 2
(AC176942) Strongylocentrotus purpuratus clone R3-33O17, WOR... 46 3.6 2
(AC208958) Nomascus leucogenys chromosome UNK clone CH271-13... 34 3.6 2
(AC197175) Macaca mulatta clone CH250-523B21, WORKING DRAFT ... 34 3.6 2
(AC020587) Homo sapiens chromosome 1 clone RP11-99F3, WORKIN... 34 3.6 2
(AC121533) Mus musculus chromosome 9, clone RP24-555P22, com... 34 3.6 2
(AC181392) Strongylocentrotus purpuratus clone R3-1113N21, W... 46 3.6 2
(AC023287) Homo sapiens chromosome 17 clone RP11-140D5, WORK... 36 3.6 2
(BX649343) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 34 3.6 2
(AC177076) Strongylocentrotus purpuratus clone R3-4004L10, W... 34 3.6 2
(AC160867) Mus musculus clone RP24-93A14, WORKING DRAFT SEQU... 46 3.6 2
(AC193870) Pan troglodytes BAC clone CH251-555J5 from chromo... 34 3.6 2
(AC139676) Homo sapiens chromosome 8, clone RP13-648O9, comp... 34 3.6 2
(AL359181) Human DNA sequence from clone RP11-392N11 on chro... 32 3.6 2
(AC060785) Homo sapiens chromosome 16 clone RP11-451N20 map ... 36 3.6 2
(AC084738) Homo sapiens chromosome 17 clone RP11-11J14, WORK... 46 3.6 2
(AC092619) Homo sapiens BAC clone RP11-225M4 from 2, complet... 34 3.6 2
(AC023595) Homo sapiens 12 BAC RP11-553N19 (Roswell Park Can... 36 3.6 2
(AC203130) Callicebus moloch clone LB5-328O7, WORKING DRAFT ... 34 3.6 2
(AC180649) Strongylocentrotus purpuratus clone R3-3090E3, WO... 34 3.6 2
(CE451606) tigr-gss-dog-17000319220162 Dog Library Canis lup... 38 3.6 2
(AC027726) Homo sapiens clone RP11-815E8, WORKING DRAFT SEQU... 36 3.6 2
(CU469191) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.7 8
(AC093028) Homo sapiens 12 BAC RP11-604N13 (Roswell Park Can... 34 3.7 2
(AC179481) Strongylocentrotus purpuratus clone R3-63M7, WORK... 46 3.7 2
(AC013591) Homo sapiens clone RP11-8J13, WORKING DRAFT SEQUE... 36 3.7 2
(AC176601) Strongylocentrotus purpuratus clone R3-3079A20, W... 34 3.7 2
(AC099636) Mus musculus chromosome 19, clone RP24-149H13, co... 36 3.7 2
(CU466399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.7 2
(AC226118) Homo sapiens BAC clone CH15-135D13 from chromosom... 34 3.7 2
(AC060771) Homo sapiens chromosome 17, clone RP11-169I9, com... 34 3.7 2
(AC177421) Strongylocentrotus purpuratus clone R3-54J21, WOR... 34 3.7 2
(Z83838) Human DNA sequence from clone RP1-127B20 on chromos... 34 3.7 2
(AC172733) Sorex araneus clone SA_Ba-589G15, WORKING DRAFT S... 34 3.7 2
(AL590105) Human DNA sequence from clone RP11-273H7 on chrom... 34 3.7 2
(CN981412) 49622_126_14_G06 Fundulus Heteroclitus Liver Fund... 36 3.7 2
(AC073578) Homo sapiens 12 BAC RP11-897M7 (Roswell Park Canc... 34 3.7 2
(AP000859) Homo sapiens genomic DNA, chromosome 11q clone:CM... 36 3.7 2
(AP005140) Homo sapiens genomic DNA, chromosome 11 clone:CMB... 34 3.7 2
(CN981180) 49262_126_10_E06 Fundulus Heteroclitus Liver Fund... 36 3.7 2
(AM469368) Vitis vinifera contig VV78X110747.9, whole genome... 42 3.7 3
(AC010606) Homo sapiens chromosome 19 clone CTB-25J19, compl... 46 3.7 2
(AC092141) Homo sapiens chromosome 16 clone RP11-478K1, comp... 36 3.8 2
(AC107984) Homo sapiens chromosome 17 clone CTD-2304H8 map 1... 46 3.8 2
(AP009951) Lotus japonicus genomic DNA, chromosome 5, clone:... 34 3.8 8
(AC171141) Helobdella robusta clone CH306-1B3, complete sequ... 34 3.8 9
(AC116848) Mus musculus clone RP24-395E24, LOW-PASS SEQUENCE... 34 3.8 2
(AX571885) Sequence 3 from Patent WO02066644. 36 3.9 2
(AC140118) Homo sapiens 12 BAC RP13-507P19 (Roswell Park Can... 46 3.9 2
(DQ217942) Homo sapiens EGF-like module containing mucin-lik... 36 3.9 2
(BX119919) Human DNA sequence from clone RP11-987D21 on chro... 34 3.9 2
(AF413054) Zea mays CAG and TAG long trinucleotide repeat. 36 3.9 2
(AC141203) Rattus norvegicus clone CH230-389K15, WORKING DRA... 34 3.9 2
(AC068358) Homo sapiens chromosome 8 clone RP11-113I18 map 8... 36 3.9 2
(AP005379) Homo sapiens genomic DNA, chromosome 11 clone:CMF... 46 4.0 2
(AC225595) Homo sapiens FOSMID clone ABC14-50997500E11 from ... 34 4.0 2
(AC151594) Nematostella vectensis clone JGIAFIN-301N24, comp... 34 4.0 2
(AC092305) Homo sapiens chromosome 19 clone LLNLR-229B1, com... 46 4.0 2
(ET248443) S0123F06_SP6 CHORI-214 Salmo salar genomic clone ... 36 4.0 2
(AC105344) Homo sapiens BAC clone RP11-585B9 from 2, complet... 34 4.0 2
(DX449550) BE2019_J02_R IASMA L2 HindIII BAC library Vitis v... 42 4.0 2
(CN971330) 18827_123-035-75 Fundulus Heteroclitus Liver Fund... 36 4.0 2
(EY316661) CAWX26752.fwd CAWX Helobdella robusta Primary Ear... 32 4.0 4
(AL606499) Human DNA sequence from clone RP5-1034E9 on chrom... 32 4.1 2
(AL929269) Human DNA sequence from clone RP11-658E23 on chro... 34 4.1 2
(DV746281) ID0AAG5BH02CM1 ID0AAG Acyrthosiphon pisum cDNA cl... 34 4.2 3
(ET335071) S0042D08_SP6 CHORI-214 Salmo salar genomic clone ... 36 4.2 2
(CJ920390) Triticum aestivum cDNA clone:whchan11o21, 5' end. 36 4.2 2
(ER848055) PPTC204TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 4.3 2
(FF297949) 279318894 Pea aphid whole body normalized full le... 36 4.3 2
(EY328030) CAWY13028.fwd CAWY Helobdella robusta Subtracted ... 36 4.3 2
(EY316436) CAWX26619.fwd CAWX Helobdella robusta Primary Ear... 36 4.3 2
(EY326416) CAWY11584.fwd CAWY Helobdella robusta Subtracted ... 36 4.4 2
(AP006262) Homo sapiens genomic DNA, 8q24.3, PCR product: KP... 34 4.4 2
(EK464327) 1095469412086 Global-Ocean-Sampling_GS-32-01-01-1... 40 4.6 2
(BV631841) S215P61043FD9.T0 Clara Pan troglodytes troglodyte... 38 4.6 2
(EY342272) CAWZ11732.fwd CAWZ Helobdella robusta Primary Lat... 36 4.6 2
(DE158439) Bombyx mori genomic DNA, Fosmid clone:RO0302-E23_R. 36 4.7 2
(CN970886) 18383_123-029-73 Fundulus Heteroclitus Liver Fund... 36 4.8 2
(FC136429) 1106908498598 BABEVPN-C-01-1-7KB Papio anubis cDN... 34 4.8 2
(DW505822) GH_TMIRS_097_F04_F Cotton Normalized Library dT p... 36 4.8 2
(DE926834) Macropus eugenii DNA, BAC clone: MEB1-116B15_F, 5... 46 4.8 2
(FD839762) CBGZ8191.rev CBGZ Volvox carteri f. nagariensis i... 34 4.9 2
(FD829838) CBGZ3077.rev CBGZ Volvox carteri f. nagariensis i... 34 4.9 2
(BZ259220) CH230-253K11.TJ CHORI-230 Segment 2 Rattus norveg... 34 4.9 2
(FD916826) CBOX19445.fwd CBOX Volvox carteri f. nagariensis ... 34 4.9 2
(FD916825) CBOX19445.rev CBOX Volvox carteri f. nagariensis ... 34 4.9 2
(CT519763) A BAC library has been constructed from cultivar ... 42 4.9 2
(FD922549) CBOX4060.rev CBOX Volvox carteri f. nagariensis i... 34 4.9 2
(FC130288) 1106908440154 BABEVPN-C-01-1-7KB Papio anubis cDN... 34 4.9 2
(EY324230) CAWX9823.rev CAWX Helobdella robusta Primary Earl... 38 4.9 3
(DW505821) GH_TMIRS_097_F04 Cotton Normalized Library dT pri... 36 4.9 2
(BV220056) S233P653RA9.T0 LabradorRetriever Canis familiaris... 46 4.9 2
(AL240459) Tetraodon nigroviridis genome survey sequence T7 ... 36 4.9 2
(FD832556) CBGZ34303.rev CBGZ Volvox carteri f. nagariensis ... 34 4.9 2
(CN970961) 18458_123-030-69 Fundulus Heteroclitus Liver Fund... 36 4.9 2
(G77997) S209P6361FF8.T0 C3H/HeJ Mus musculus STS genomic, s... 36 4.9 2
(EF207620) Excirolana hirsuticauda clone Ehir7 microsatellit... 36 4.9 2
(EA116822) Sequence 1006 from patent US 7205146. 34 5.0 2
(AA280762) zs96c06.r1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 34 5.0 2

>(AC116957) Dictyostelium discoideum chromosome 2 map 1685067-2090751
strain AX4, complete sequence.
Length = 405682

Score = 765 bits (386), Expect(2) = 0.0
Identities = 386/386 (100%)
Strand = Plus / Minus


Query: 152 gacaatattgaaaaacttaaattattttcaaaatcacaaatattattattaccacaaccc 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158762 gacaatattgaaaaacttaaattattttcaaaatcacaaatattattattaccacaaccc 158703


Query: 212 caaatagataaccaaccctcattttattatcaagataaagttgaatcgattaaaccaatc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158702 caaatagataaccaaccctcattttattatcaagataaagttgaatcgattaaaccaatc 158643


Query: 272 atacaggtaaagggtataggagttctttcaataccatgtagtgatgaacaaattagaaaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158642 atacaggtaaagggtataggagttctttcaataccatgtagtgatgaacaaattagaaaa 158583


Query: 332 gttattaaaacctatggaactcgtgaatcatttgtaaagggatatgatacaatcaatgat 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158582 gttattaaaacctatggaactcgtgaatcatttgtaaagggatatgatacaatcaatgat 158523


Query: 392 atcgaagtaagaaaagtttggaaaatcgatcctgattcactagagtttttaattgataaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158522 atcgaagtaagaaaagtttggaaaatcgatcctgattcactagagtttttaattgataaa 158463


Query: 452 cctccaataaagagagttttaaaatcaaaattaattattgatcaatcaccatcatcacca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158462 cctccaataaagagagttttaaaatcaaaattaattattgatcaatcaccatcatcacca 158403


Query: 512 tttccatcaccatcaccaataaaacc 537
||||||||||||||||||||||||||
Sbjct: 158402 tttccatcaccatcaccaataaaacc 158377

Score = 628 bits (317), Expect(19) = 0.0
Identities = 317/317 (100%)
Strand = Plus / Minus


Query: 1947 ccaaaaccaaagaatgaaattgataaatggaaaattgcattggatgaggtagttgaaaag 2006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157640 ccaaaaccaaagaatgaaattgataaatggaaaattgcattggatgaggtagttgaaaag 157581


Query: 2007 gttaaaaaaggattaggtattgatgaaaatgaaatattggaagcaaatttctcaaatctc 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157580 gttaaaaaaggattaggtattgatgaaaatgaaatattggaagcaaatttctcaaatctc 157521


Query: 2067 tacgtttatgacaaaggtggtaaattttctatacctcatgtaaatactgaaaaagataag 2126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157520 tacgtttatgacaaaggtggtaaattttctatacctcatgtaaatactgaaaaagataag 157461


Query: 2127 agaatgtttgcaactttaacatttgttttaccaactcaattgaaaacaccccacaaaggt 2186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157460 agaatgtttgcaactttaacatttgttttaccaactcaattgaaaacaccccacaaaggt 157401


Query: 2187 ggccaattattaattacacacaacggtgaaaccattcaattatttcaagagaataattca 2246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157400 ggccaattattaattacacacaacggtgaaaccattcaattatttcaagagaataattca 157341


Query: 2247 cttgatagagtcattgt 2263
|||||||||||||||||
Sbjct: 157340 cttgatagagtcattgt 157324

Score = 398 bits (201), Expect(19) = 0.0
Identities = 201/201 (100%)
Strand = Plus / Minus


Query: 2411 taaagagatagaaaccacaaattcagcaccaatagaaaatttagaggtagaaatgtcatc 2470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157176 taaagagatagaaaccacaaattcagcaccaatagaaaatttagaggtagaaatgtcatc 157117


Query: 2471 atcaaataaacttagtccaaatgattttcaaataaattattcatcattctattcagattg 2530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157116 atcaaataaacttagtccaaatgattttcaaataaattattcatcattctattcagattg 157057


Query: 2531 tgtttgtgaaatgaaccaggttaccaaaggattaatggtttgtttagtttataatttaat 2590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157056 tgtttgtgaaatgaaccaggttaccaaaggattaatggtttgtttagtttataatttaat 156997


Query: 2591 aagaaatggtaaaaaacctat 2611
|||||||||||||||||||||
Sbjct: 156996 aagaaatggtaaaaaacctat 156976

Score = 387 bits (195), Expect(2) = 0.0
Identities = 195/195 (100%)
Strand = Plus / Minus


Query: 545 tcaacaaaggagccaaaagagcctacagaaccagcagaaccaacaacagaatcaacaata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158369 tcaacaaaggagccaaaagagcctacagaaccagcagaaccaacaacagaatcaacaata 158310


Query: 605 gaggaaccaaattccatcgaaaaaacagacgtaataaataaaatagcagatgaaatggag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158309 gaggaaccaaattccatcgaaaaaacagacgtaataaataaaatagcagatgaaatggag 158250


Query: 665 gatatatctactggtgatcaacaatctaatgaaaagatacttgcaaaggatatacctcaa 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158249 gatatatctactggtgatcaacaatctaatgaaaagatacttgcaaaggatatacctcaa 158190


Query: 725 attgagccatctact 739
|||||||||||||||
Sbjct: 158189 attgagccatctact 158175

Score = 347 bits (175), Expect(19) = 0.0
Identities = 175/175 (100%)
Strand = Plus / Minus


Query: 1065 gcctacagaaccagcagaaccaacaacagaatcaacaatagaggaaccaaattccatcga 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158349 gcctacagaaccagcagaaccaacaacagaatcaacaatagaggaaccaaattccatcga 158290


Query: 1125 aaaaacagacgtaataaataaaatagcagatgaaatggaggatatatctactggtgatca 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158289 aaaaacagacgtaataaataaaatagcagatgaaatggaggatatatctactggtgatca 158230


Query: 1185 acaatctaatgaaaagatacttgcaaaggatatacctcaaattgagccatctact 1239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158229 acaatctaatgaaaagatacttgcaaaggatatacctcaaattgagccatctact 158175

Score = 276 bits (139), Expect(19) = 0.0
Identities = 139/139 (100%)
Strand = Plus / Minus


Query: 1294 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158120 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 158061


Query: 1354 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158060 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 158001


Query: 1414 acattacccacttctaaac 1432
|||||||||||||||||||
Sbjct: 158000 acattacccacttctaaac 157982

Score = 109 bits (55), Expect(19) = 0.0
Identities = 55/55 (100%)
Strand = Plus / Minus


Query: 2859 caatatcaaaacaacttgaagagaaacaaatgaccggatatttattagaacataa 2913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156727 caatatcaaaacaacttgaagagaaacaaatgaccggatatttattagaacataa 156673

Score = 83.8 bits (42), Expect(19) = 0.0
Identities = 42/42 (100%)
Strand = Plus / Minus


Query: 2666 gaaaatgatatttcacaagatagtattttaccaattgataat 2707
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156920 gaaaatgatatttcacaagatagtattttaccaattgataat 156879

Score = 77.8 bits (39), Expect(19) = 0.0
Identities = 39/39 (100%)
Strand = Plus / Minus


Query: 2322 gatgatttactctcaaatacactaactgaaagtatcact 2360
|||||||||||||||||||||||||||||||||||||||
Sbjct: 157265 gatgatttactctcaaatacactaactgaaagtatcact 157227

Score = 38.2 bits (19), Expect(19) = 0.0
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 1496 ccaaaacagtttcaaatga 1514
|||||||||||||||||||
Sbjct: 157918 ccaaaacagtttcaaatga 157900

Score = 34.2 bits (17), Expect(19) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 2649 gttccttcattagtaga 2665
|||||||||||||||||
Sbjct: 156938 gttccttcattagtaga 156922

Score = 32.2 bits (16), Expect(19) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 155 aatattgaaaaactta 170
||||||||||||||||
Sbjct: 355990 aatattgaaaaactta 355975

Score = 30.2 bits (15), Expect(19) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 478 aaaattaattattga 492
|||||||||||||||
Sbjct: 208721 aaaattaattattga 208707

Score = 30.2 bits (15), Expect(19) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 171 aattattttcaaaat 185
|||||||||||||||
Sbjct: 326237 aattattttcaaaat 326223

Score = 28.2 bits (14), Expect(19) = 0.0
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 4 aaaaaataattaagataa 21
||||||||||||| ||||
Sbjct: 405634 aaaaaataattaaaataa 405617

Score = 26.3 bits (13), Expect(19) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 817 aacaattgaacaa 829
|||||||||||||
Sbjct: 171469 aacaattgaacaa 171457

Score = 26.3 bits (13), Expect(19) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 515 ccatcaccatcac 527
|||||||||||||
Sbjct: 187229 ccatcaccatcac 187217

Score = 26.3 bits (13), Expect(19) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 496 atcaccatcatca 508
|||||||||||||
Sbjct: 192758 atcaccatcatca 192746

Score = 26.3 bits (13), Expect(19) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 469 tttaaaatcaaaa 481
|||||||||||||
Sbjct: 243429 tttaaaatcaaaa 243417

Score = 26.3 bits (13), Expect(19) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 315 atgaacaaattag 327
|||||||||||||
Sbjct: 307976 atgaacaaattag 307964

Score = 26.3 bits (13), Expect(19) = 0.0
Identities = 16/17 (94%)
Strand = Plus / Minus


Query: 234 tttattatcaagataaa 250
||||||||||| |||||
Sbjct: 324278 tttattatcaatataaa 324262

Score = 329 bits (166), Expect(10) = 0.0
Identities = 170/172 (98%)
Strand = Plus / Minus


Query: 1737 caatatcaaaacaacttgaagagaaacaaatgaccggatatttattagaacataaatata 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156727 caatatcaaaacaacttgaagagaaacaaatgaccggatatttattagaacataaatata 156668


Query: 1797 cctataaatatttcgattgtttaaaaggtagagatagaatagttggtgaaagattaaaaa 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156667 cctataaatatttcgattgtttaaaaggtagagatagaatagttggtgaaagattaaaaa 156608


Query: 1857 gaatatctaaagaattggnttgtaatttctattngacaggtattaatttctc 1908
|||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 156607 gaatatctaaagaattggattgtaatttctatttgacaggtattaatttctc 156556

Score = 276 bits (139), Expect(10) = 0.0
Identities = 139/139 (100%)
Strand = Plus / Minus


Query: 794 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158120 gcagtagtagcagcagcaattgaaacaattgaacaaccatctaaagtgatgctaaataaa 158061


Query: 854 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158060 gaaacttctttgatatcctcaacaccagatcttatagaagtggaaaagaataatttatca 158001


Query: 914 acattacccacttctaaac 932
|||||||||||||||||||
Sbjct: 158000 acattacccacttctaaac 157982

Score = 137 bits (69), Expect(10) = 0.0
Identities = 69/69 (100%)
Strand = Plus / Minus


Query: 996 ccaaaacagtttcaaatgaatcatcaacagacataacagaatcaagtacatcagagccaa 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157918 ccaaaacagtttcaaatgaatcatcaacagacataacagaatcaagtacatcagagccaa 157859


Query: 1056 caacaacag 1064
|||||||||
Sbjct: 157858 caacaacag 157850

Score = 111 bits (56), Expect(10) = 0.0
Identities = 56/56 (100%)
Strand = Plus / Minus


Query: 1 gtcaaaaaataattaagataaagattaacacaccatgtttaatatttgaataatgt 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158988 gtcaaaaaataattaagataaagattaacacaccatgtttaatatttgaataatgt 158933

Score = 91.7 bits (46), Expect(10) = 0.0
Identities = 46/46 (100%)
Strand = Plus / Minus


Query: 55 gttaaataacatattagaattattgcaagcaaaaagtggttttgac 100
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158859 gttaaataacatattagaattattgcaagcaaaaagtggttttgac 158814

Score = 30.2 bits (15), Expect(10) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 2428 caaattcagcaccaa 2442
|||||||||||||||
Sbjct: 32163 caaattcagcaccaa 32149

Score = 26.3 bits (13), Expect(10) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 2691 ttttaccaattga 2703
|||||||||||||
Sbjct: 30245 ttttaccaattga 30233

Score = 26.3 bits (13), Expect(10) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 2412 aaagagatagaaa 2424
|||||||||||||
Sbjct: 120943 aaagagatagaaa 120931

Score = 26.3 bits (13), Expect(10) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 2189 ccaattattaatt 2201
|||||||||||||
Sbjct: 130891 ccaattattaatt 130879

Score = 26.3 bits (13), Expect(10) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 2021 aggtattgatgaa 2033
|||||||||||||
Sbjct: 148242 aggtattgatgaa 148230

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,823,439,679
Number of extensions: 183818246
Number of successful extensions: 15360560
Number of sequences better than 10.0: 706
Length of query: 2913
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2888
Effective length of database: 96,311,147,814
Effective search space: 278146594886832
Effective search space used: 278146594886832
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U15834-1 (Contig-U15834-1Q) /CSM_Contig/Contig-U15834-1Q.Seq.d
(2913 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP000689_69(CP000689|pid:none) Acidiphilium cryptum JF-5 plasmid... 64 2e-08
AC117176_52(AC117176|pid:none) Dictyostelium discoideum chromoso... 57 5e-06
CP001157_5035(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 50 4e-04
CP000820_6981(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 48 0.002

>CP000689_69(CP000689|pid:none) Acidiphilium cryptum JF-5 plasmid
pACRY01, complete sequence.
Length = 762

Score = 64.3 bits (155), Expect = 2e-08
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +3

Query: 1974 WKIALDEVVEKVKKGLGIDENEILEANFSNLYVYDKGGKFSIPHVNTEKDKRMFATLTFV 2153
W L++++ +V GLG+DE ++A F L +YD+GG F + H +TEK MFATLT V
Sbjct: 93 WARTLEDILARVSDGLGVDEP--IDAEFYKLLIYDQGG-FFVSHRDTEKVAGMFATLTVV 149

Query: 2154 LPTQLKTPHKGGQLLITHNG 2213
LP+ GG L+I H G
Sbjct: 150 LPSHF----SGGDLIIRHKG 165

Score = 36.2 bits (82), Expect = 7.1
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +3

Query: 2502 INYSSFYSDCVCEMNQVTKGLMVCLVYNLIRNGK 2603
+ +++FY+DCV E+ V++G + L+YNL+R +
Sbjct: 180 VAFAAFYADCVHEILPVSEGCRLALIYNLLRRSR 213

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,747,428,354
Number of extensions: 40884573
Number of successful extensions: 152985
Number of sequences better than 10.0: 4
Number of HSP's gapped: 152947
Number of HSP's successfully gapped: 6
Length of query: 971
Length of database: 1,051,180,864
Length adjustment: 138
Effective length of query: 833
Effective length of database: 604,535,722
Effective search space: 503578256426
Effective search space used: 503578256426
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.54 gvh: 0.08 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U15834-1 is nuc

VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 1
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0