NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15828-1
Contig ID Contig-U15828-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15828-1 (Contig-U15828-1Q) /CSM_Contig/Contig-U15828-1Q.Seq.d
ATAAAAAAAATTAAAAAATTAAAAAAGTTATCCACCCAAGTAAAAAATGA
ATAAAAAGAAACAAATAATAACAACAATTACTTTATTATCATTCATTAAT
TTATTTTCAATAGTGAATGCAATAATTAAAGTTAATCCAGCAAATCAATT
TTTTATTGATCAATATAATAGAGTTCGTTTATTTCATGGTGTAAATGTTG
TTTATAAAATTCCACCATTTCATCCAAGTTTAGAAGGATTTGATCCAGTT
ACATCATTTTCATCACAAGATATTGAAAATTTAGTTGAATGGGGATTTAA
TGCAGTTAGATTGGGTGTAATGTGGCCAGGTGTAGAACCAGTAAAAGATG
AATATAATCAAACCTATTTAGATGTAATGTCAAAATTAGTTAGTGAGATG
GAAGATAATGAAATTTATACACTGATTGATTTCCATCAAGATTTATTATC
AAGAAAGTATTGTGGTGAAGGACTTCCAGATTGGATAGTATCCAATGATA
CAAATGATAGTTTCCCATCACCAGTTGCACATTCATATCCAAAGAATAAT
GAATCCTATCCATCATTAGATCAATGTTTAAATAAAGATTTTGGAGTATA
TTATTTTAGTGAAGATGTGAATCGTGAATTTCAAAATCTTTACGATAATG
TTAATGGTGTTCAAGATAAATTCATTGACTACTGGAGACAAGTAGTAAAC
ACATTCAAATCCTATGATACAGTATTAGGTTATGAAATTATTAATGAACC
ATGGGGAGGTGATATTTACCAAAATCCAGAGTATTTGCTTAAATTGGGTT
ATGCAGACTCAAAGAA----------GCTTAAATTGGGTTATGCAGACTC
AAAAGAATCTTTTACCACTATATCAAGCAGTGAATAATGCCATTAGAGAA
TTGGATGATCAACATTGTGTATACTATGAAAAAGCATTGACTGATTTGTT
TCATTCTTATTTCCCATCTGGTACACCAGGTGGTGTCCAATACAATGATA
GACAAGTATTATCCTATCATATCTATTGTGCGACCGACCGTGATGGTAAT
CCACGTCATGAATACGTTTGCGACGGAGAAGATGACATATTTCTAGTTAG
CGCTATGAAAGATTTAAAACAAACTGGTGGAGGTGGCTTTATGACAGAAT
TCGGTGCAGTCTCCAATGGAACCAATTCAATTGAAATGTTGAATTACCTA
ACTGGTTCAGCTGATAAATATTTACAATCATGGACTTACTGGCAATTAAA
GTATTACAATGATATCACTACTGCAGGTTCAACAGAATCACTCTATTTAC
CAAATGGTGAATTGGACATTCCAAAAATTACAGCCCTCTCTCGTACCTAT
GCTCAAGCAATTGCAGGTGTGCCATTATCAATGTCCTTCAATCCTGCCAA
TAGTGATTTCTCATTCTCTTACAACATCAATACAACCATCACTCAACCAA
CTCAAATCTATTTAAATCAAGATATTTATTATCCAAATGGTTTCACTACA
AATATTATAACTGGTACTGCTACTGTTTCAATCCCTCAAAAAAATTTAAT
TTATATTTTACCAAATTCAAATACAATTAATCAATCAACAATTACAATTA
CAA
Gap gap included
Contig length 1593
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4184040
End point 4182448
Strand (PLUS/MINUS) MINUS
Number of clones 12
Number of EST 19
Link to clone list U15828
List of clone(s) 

est1=VFJ534F,-1,575
est2=VFL404F,1,658
est3=VFL201F,18,355
est4=CFF632F,21,647
est5=SFJ149F,21,431
est6=VFD591F,21,654
est7=VFE865F,21,537
est8=SFA335F,29,622
est9=CFB159F,34,376
est10=VFN505F,34,658
est11=CFC141F,42,658
est12=CFJ187F,193,816
est13=CFB159H,486,617
est14=CFC141Z,817,1587
est15=CFB159Z,829,1574
est16=SFA335Z,860,1556
est17=VFJ534Z,869,1566
est18=VFN505Z,899,1593
est19=CFJ187Z,1154,1638
Translated Amino Acid sequence 
*kklkn*ksyppk*KMNKKKQIITTITLLSFINLFSIVNAIIKVNPANQFFIDQYNRVRL
FHGVNVVYKIPPFHPSLEGFDPVTSFSSQDIENLVEWGFNAVRLGVMWPGVEPVKDEYNQ
TYLDVMSKLVSEMEDNEIYTLIDFHQDLLSRKYCGEGLPDWIVSNDTNDSFPSPVAHSYP
KNNESYPSLDQCLNKDFGVYYFSEDVNREFQNLYDNVNGVQDKFIDYWRQVVNTFKSYDT
VLGYEIINEPWGGDIYQNPEYLLKLGYADSK---

---LNWVMQTQKNLLPLYQAVNNAIRELDDQHCVYYEKALTDLFHSYFPSGTPGGVQYND
RQVLSYHIYCATDRDGNPRHEYVCDGEDDIFLVSAMKDLKQTGGGGFMTEFGAVSNGTNS
IEMLNYLTGSADKYLQSWTYWQLKYYNDITTAGSTESLYLPNGELDIPKITALSRTYAQA
IAGVPLSMSFNPANSDFSFSYNINTTITQPTQIYLNQDIYYPNGFTTNIITGTATVSIPQ
KNLIYILPNSNTINQSTITIT
Translated Amino Acid sequence (All Frames) 
Frame A:
ikkikklkklstqvkne*ketnnnnnyfiiih*fifnsecnn*s*ssksify*si**ssf
iswckccl*nstisskfrri*ssyiifitry*kfs*mgi*cs*igcnvarcrtskr*i*s
nlfrcnvkis**dgr**nlytd*fpsrfiikkvlw*rtsrldsiq*yk**fpitsctfis
ke**ilsiirsmfk*rfwsilf**rces*iskslr*c*wcsr*ih*lletsskhiqil*y
sirl*ny**tmgr*ylpksrvfa*iglcrlke---

---a*iglcrlkrifyhyikq*implenwminivytmkkh*licfilishlvhqvvsntm
idkyypiisivrptvmvihvmntfatekmtyf*lal*ki*nklveval*qnsvqspmepi
qlkc*it*lvqliniynhgltgn*sitmisllqvqqnhsiyqmvnwtfqklqpslvpmlk
qlqvchyqcpsilpivishslttsiqpslnqlksi*ikifiiqmvslqil*lvlllfqsl
kki*fifyqiqiqlinqqlqlq

Frame B:
*kklkn*ksyppk*KMNKKKQIITTITLLSFINLFSIVNAIIKVNPANQFFIDQYNRVRL
FHGVNVVYKIPPFHPSLEGFDPVTSFSSQDIENLVEWGFNAVRLGVMWPGVEPVKDEYNQ
TYLDVMSKLVSEMEDNEIYTLIDFHQDLLSRKYCGEGLPDWIVSNDTNDSFPSPVAHSYP
KNNESYPSLDQCLNKDFGVYYFSEDVNREFQNLYDNVNGVQDKFIDYWRQVVNTFKSYDT
VLGYEIINEPWGGDIYQNPEYLLKLGYADSK---

---lklgyadskesfttissse*ch*rig*stlcil*ksid*fvsflfpiwytrwcpiq*
*tsiilsyllcdrp*w*sts*irlrrrr*hiss*ryerfktnwwrwlydrircslqwnqf
n*nvelpnwfs**iftimdllaikvlq*yhycrfnritlftkw*ighsknysplsylcss
ncrcaiinvlqscq**flillqhqynhhstnsnlfksryllskwfhykyynwycycfnps
kkfnlyftkfkyn*sinnyny

Frame C:
kkn*kikkvihpskk*ikrnk**qqllyyhsliyfq**mq*lkliqqinflliniiefvy
fmv*mlfikfhhfiqv*kdliqlhhfhhkilki*lngdlmqldwv*cgqv*nq*kmniik
pi*m*cqn*lvrwkimkfih*lisikiyyqesivvkdfqig*ypmiqmivshhqlhihiq
rimnpihh*inv*ikileyiilvkm*ivnfkiftimlmvfkinslttgdk**thsnpmiq
y*vmkllmnhgeviftkiqsiclnwvmqtqr---

---LNWVMQTQKNLLPLYQAVNNAIRELDDQHCVYYEKALTDLFHSYFPSGTPGGVQYND
RQVLSYHIYCATDRDGNPRHEYVCDGEDDIFLVSAMKDLKQTGGGGFMTEFGAVSNGTNS
IEMLNYLTGSADKYLQSWTYWQLKYYNDITTAGSTESLYLPNGELDIPKITALSRTYAQA
IAGVPLSMSFNPANSDFSFSYNINTTITQPTQIYLNQDIYYPNGFTTNIITGTATVSIPQ
KNLIYILPNSNTINQSTITIT
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15828-1 (Contig-U15828-1Q)
/CSM_Contig/Contig-U15828-1Q.Seq.d
         (1603 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15828-1 (Contig-U15828-1Q) /CSM_Contig/Conti...  2956  0.0
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U01704-1 (Contig-U01704-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U15898-1 (Contig-U15898-1Q) /CSM_Contig/Conti...    38  0.041
Contig-U14928-1 (Contig-U14928-1Q) /CSM_Contig/Conti...    38  0.041
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    38  0.041
Contig-U09306-1 (Contig-U09306-1Q) /CSM_Contig/Conti...    38  0.041
Contig-U16282-1 (Contig-U16282-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U16277-1 (Contig-U16277-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U15908-1 (Contig-U15908-1Q) /CSM_Contig/Conti...    36  0.16

>Contig-U15828-1 (Contig-U15828-1Q) /CSM_Contig/Contig-U15828-1Q.Seq.d
          Length = 1603

 Score = 2956 bits (1491), Expect = 0.0
 Identities = 1535/1542 (99%)
 Strand = Plus / Plus

                                                                        
Query: 62   caaataataacaacaattactttattatcattcattaatttattttcaatagtgaatgca 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62   caaataataacaacaattactttattatcattcattaatttattttcaatagtgaatgca 121

                                                                        
Query: 122  ataattaaagttaatccagcaaatcaattttttattgatcaatataatagagttcgttta 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  ataattaaagttaatccagcaaatcaattttttattgatcaatataatagagttcgttta 181

                                                                        
Query: 182  tttcatggtgtaaatgttgtttataaaattccaccatttcatccaagtttagaaggattt 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  tttcatggtgtaaatgttgtttataaaattccaccatttcatccaagtttagaaggattt 241

                                                                        
Query: 242  gatccagttacatcattttcatcacaagatattgaaaatttagttgaatggggatttaat 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  gatccagttacatcattttcatcacaagatattgaaaatttagttgaatggggatttaat 301

                                                                        
Query: 302  gcagttagattgggtgtaatgtggccaggtgtagaaccagtaaaagatgaatataatcaa 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  gcagttagattgggtgtaatgtggccaggtgtagaaccagtaaaagatgaatataatcaa 361

                                                                        
Query: 362  acctatttagatgtaatgtcaaaattagttagtgagatggaagataatgaaatttataca 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  acctatttagatgtaatgtcaaaattagttagtgagatggaagataatgaaatttataca 421

                                                                        
Query: 422  ctgattgatttccatcaagatttattatcaagaaagtattgtggtgaaggacttccagat 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  ctgattgatttccatcaagatttattatcaagaaagtattgtggtgaaggacttccagat 481

                                                                        
Query: 482  tggatagtatccaatgatacaaatgatagtttcccatcaccagttgcacattcatatcca 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  tggatagtatccaatgatacaaatgatagtttcccatcaccagttgcacattcatatcca 541

                                                                        
Query: 542  aagaataatgaatcctatccatcattagatcaatgtttaaataaagattttggagtatat 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  aagaataatgaatcctatccatcattagatcaatgtttaaataaagattttggagtatat 601

                                                                        
Query: 602  tattttagtgaagatgtgaatcgtgaatttcaaaatctttacgataatgttaatggtgtt 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  tattttagtgaagatgtgaatcgtgaatttcaaaatctttacgataatgttaatggtgtt 661

                                                                        
Query: 662  caagataaattcattgactactggagacaagtagtaaacacattcaaatcctatgataca 721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  caagataaattcattgactactggagacaagtagtaaacacattcaaatcctatgataca 721

                                                                        
Query: 722  gtattaggttatgaaattattaatgaaccatggggaggtgatatttaccaaaatccagag 781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  gtattaggttatgaaattattaatgaaccatggggaggtgatatttaccaaaatccagag 781

                                                                        
Query: 782  tatttgcttaaattgggttatgcagactcaaagaannnnnnnnnngcttaaattgggtta 841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  tatttgcttaaattgggttatgcagactcaaagaannnnnnnnnngcttaaattgggtta 841

                                                                        
Query: 842  tgcagactcaaaagaatcttttaccactatatcaagcagtgaataatgccattagagaat 901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  tgcagactcaaaagaatcttttaccactatatcaagcagtgaataatgccattagagaat 901

                                                                        
Query: 902  tggatgatcaacattgtgtatactatgaaaaagcattgactgatttgtttcattcttatt 961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  tggatgatcaacattgtgtatactatgaaaaagcattgactgatttgtttcattcttatt 961

                                                                        
Query: 962  tcccatctggtacaccaggtggtgtccaatacaatgatagacaagtattatcctatcata 1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  tcccatctggtacaccaggtggtgtccaatacaatgatagacaagtattatcctatcata 1021

                                                                        
Query: 1022 tctattgtgcgaccgaccgtgatggtaatccacgtcatgaatacgtttgcgacggagaag 1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 tctattgtgcgaccgaccgtgatggtaatccacgtcatgaatacgtttgcgacggagaag 1081

                                                                        
Query: 1082 atgacatatttctagttagcgctatgaaagatttaaaacaaactggtggaggtggcttta 1141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 atgacatatttctagttagcgctatgaaagatttaaaacaaactggtggaggtggcttta 1141

                                                                        
Query: 1142 tgacagaattcggtgcagtctccaatggaaccaattcaattgaaatgttgaattacctaa 1201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 tgacagaattcggtgcagtctccaatggaaccaattcaattgaaatgttgaattacctaa 1201

                                                                        
Query: 1202 ctggttcagctgataaatatttacaatcatggacttactggcaattaaagtattacaatg 1261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 ctggttcagctgataaatatttacaatcatggacttactggcaattaaagtattacaatg 1261

                                                                        
Query: 1262 atatcactactgcaggttcaacagaatcactctatttaccaaatggtgaattggacattc 1321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1262 atatcactactgcaggttcaacagaatcactctatttaccaaatggtgaattggacattc 1321

                                                                        
Query: 1322 caaaaattacagccctctctcgtacctatgctcaagcaattgcaggtgtgccattatcaa 1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 caaaaattacagccctctctcgtacctatgctcaagcaattgcaggtgtgccattatcaa 1381

                                                                        
Query: 1382 tgtccttcaatcctgccaatagtgatttctcattctcttacaacatcaatacaaccatca 1441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1382 tgtccttcaatcctgccaatagtgatttctcattctcttacaacatcaatacaaccatca 1441

                                                                        
Query: 1442 ctcaaccaactcaaatctatttaaatcaagatatttattatccaaatggtttcactacaa 1501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1442 ctcaaccaactcaaatctatttaaatcaagatatttattatccaaatggtttcactacaa 1501

                                                                        
Query: 1502 atattataactggtactgctactgtttcaatccctcnnnnnnntttaatttatattttac 1561
            ||||||||||||||||||||||||||||||||||||       |||||||||||||||||
Sbjct: 1502 atattataactggtactgctactgtttcaatccctcaaaaaaatttaatttatattttac 1561

                                                      
Query: 1562 caaattcaaatacaattaatcaatcaacaattacaattacaa 1603
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1562 caaattcaaatacaattaatcaatcaacaattacaattacaa 1603


>Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Contig-U11803-1Q.Seq.d
          Length = 2021

 Score = 40.1 bits (20), Expect = 0.010
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1584 atcaacaattacaattacaa 1603
            ||||||||||||||||||||
Sbjct: 1683 atcaacaattacaattacaa 1702


>Contig-U01704-1 (Contig-U01704-1Q) /CSM_Contig/Contig-U01704-1Q.Seq.d
          Length = 1041

 Score = 40.1 bits (20), Expect = 0.010
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1574 caattaatcaatcaacaattacaa 1597
            |||||||||||||||| |||||||
Sbjct: 798  caattaatcaatcaactattacaa 821


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,634
Number of Sequences: 8402
Number of extensions: 31634
Number of successful extensions: 3375
Number of sequences better than 10.0: 127
length of query: 1603
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1587
effective length of database: 7,941,110
effective search space: 12602541570
effective search space used: 12602541570
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.20
Homology vs DNA 
Query= Contig-U15828-1 (Contig-U15828-1Q) /CSM_Contig/Contig-U15828-1Q.Seq.d
         (1603 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ373540) Dictyostelium discoideum cDNA clone:ddc3e15, 3' e...  1380   0.0    1
(BJ373888) Dictyostelium discoideum cDNA clone:ddc5a11, 3' e...  1360   0.0    2
(BJ432926) Dictyostelium discoideum cDNA clone:ddv20c09, 3' ...  1277   0.0    1
(BJ435733) Dictyostelium discoideum cDNA clone:ddv28i01, 3' ...  1247   0.0    1
(BJ362053) Dictyostelium discoideum cDNA clone:ddc19m21, 5' ...  1237   0.0    1
(BJ417588) Dictyostelium discoideum cDNA clone:ddv28i01, 5' ...  1150   0.0    1
(BJ415602) Dictyostelium discoideum cDNA clone:ddv23h02, 5' ...  1150   0.0    1
(BJ360270) Dictyostelium discoideum cDNA clone:ddc5a11, 5' e...  1150   0.0    1
(BJ412503) Dictyostelium discoideum cDNA clone:ddv8e23, 5' e...  1142   0.0    1
(BJ359016) Dictyostelium discoideum cDNA clone:ddc12o08, 5' ...  1128   0.0    1
(BJ387285) Dictyostelium discoideum cDNA clone:dds1f09, 5' e...  1078   0.0    1
(BJ398630) Dictyostelium discoideum cDNA clone:dds1f09, 3' e...   880   0.0    4
(BJ414737) Dictyostelium discoideum cDNA clone:ddv20c09, 5' ...   985   0.0    1
(BJ409907) Dictyostelium discoideum cDNA clone:ddv10b18, 5' ...   910   0.0    1
(BJ389629) Dictyostelium discoideum cDNA clone:dds19a13, 5' ...   700   0.0    1
(BJ375772) Dictyostelium discoideum cDNA clone:ddc19m21, 3' ...   607   e-169  1
(BJ359967) Dictyostelium discoideum cDNA clone:ddc3e15, 5' e...   569   e-157  1
(BJ415564) Dictyostelium discoideum cDNA clone:ddv23a02, 5' ...   537   e-148  1
(CT742432) Paramecium tetraurelia 5-PRIME EST from clone LK0...    54   5e-06  2
(CT746500) Paramecium tetraurelia 5-PRIME EST from clone LK0...    50   7e-05  2
(BW571357) Ciona savignyi cDNA, clone:cscl037g10, 5'end, sin...    52   0.066  1
(AC174181) Strongylocentrotus purpuratus clone R3-3002D2, WO...    40   0.50   4
(AC176259) Strongylocentrotus purpuratus clone R3-3060M22, W...    40   0.68   4
(BX569793) Zebrafish DNA sequence from clone DKEY-183K8 in l...    48   1.0    1
(BX088541) Zebrafish DNA sequence from clone CH211-244I2 in ...    48   1.0    1
(AC133135) Papio anubis clone RP41-383H22, WORKING DRAFT SEQ...    48   1.0    1
(CT573361) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.0    1
(BX901982) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   1.0    1
(AG738485) Macaca fuscata fuscata DNA, clone: MSB2-197K09_F,...    48   1.0    1
(BX153405) Danio rerio genomic clone DKEY-122E9, genomic sur...    48   1.0    1
(CX581917) TTE00027475 Amplicon Express - Conjugative Form T...    44   1.3    2
(CX589722) TTE00028532 Amplicon Express - Conjugative Form T...    44   1.4    2
(AL590150) Zebrafish DNA sequence from clone RP71-3C13 in li...    46   4.1    1
(BV667117) S217P61535RB2.T0 Noemie Pan troglodytes troglodyt...    46   4.1    1
(AC146391) Pan troglodytes BAC clone RP43-56L16 from chromos...    46   4.1    1
(AC145773) Pan troglodytes BAC clone RP43-32M11 from chromos...    46   4.1    1
(AR557308) Sequence 12439 from patent US 6747137.                  46   4.1    1
(AC018637) Human Chromosome 7 clone RP11-175P8, complete seq...    46   4.1    1
(AC005589) Homo sapiens BAC clone RP11-161H12 from 7, comple...    46   4.1    1
(AC121068) Pan troglodytes clone RP43-154F21, WORKING DRAFT ...    46   4.1    1
(AC118168) Rattus norvegicus clone CH230-406G8, WORKING DRAF...    46   4.1    1
(AC098989) Rattus norvegicus clone CH230-81J20, *** SEQUENCI...    46   4.1    1
(BX649286) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   4.1    1
(BX640582) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   4.1    1
(DU950926) 213260 Tomato MboI BAC Library Solanum lycopersic...    46   4.1    1
(DU435273) 1098415820869 CHORI-243 Ovis aries genomic clone ...    46   4.1    1
(DU322931) 1098448218570 CHORI-243 Ovis aries genomic clone ...    46   4.1    1
(DU320580) 1098448077043 CHORI-243 Ovis aries genomic clone ...    46   4.1    1
(CN446204) CM315f Lambda ZAP cDNA fungal infected round-leav...    46   4.1    1
(CP000878) Prochlorococcus marinus str. MIT 9211, complete g...    46   4.1    1
(AE017194) Bacillus cereus ATCC 10987, complete genome.            46   4.1    1
(AC159402) Mus musculus strain BALB/c chromosome 6 clone CH2...    44   5.6    7
(CT762845) Paramecium tetraurelia 5-PRIME EST from clone LK0...    40   6.0    2
(EJ832632) 1093017586389 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.6    3

>(BJ373540) Dictyostelium discoideum cDNA clone:ddc3e15, 3' end,
            single read.
          Length = 746

 Score = 1380 bits (696), Expect = 0.0
 Identities = 698/699 (99%)
 Strand = Plus / Minus


Query: 839  ttatgcagactcaaaagaatcttttaccactatatcaagcagtgaataatgccattagag 898
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 746  ttatgcagactcaaaagaatcttttaccantatatcaagcagtgaataatgccattagag 687


Query: 899  aattggatgatcaacattgtgtatactatgaaaaagcattgactgatttgtttcattctt 958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  aattggatgatcaacattgtgtatactatgaaaaagcattgactgatttgtttcattctt 627


Query: 959  atttcccatctggtacaccaggtggtgtccaatacaatgatagacaagtattatcctatc 1018
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  atttcccatctggtacaccaggtggtgtccaatacaatgatagacaagtattatcctatc 567


Query: 1019 atatctattgtgcgaccgaccgtgatggtaatccacgtcatgaatacgtttgcgacggag 1078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  atatctattgtgcgaccgaccgtgatggtaatccacgtcatgaatacgtttgcgacggag 507


Query: 1079 aagatgacatatttctagttagcgctatgaaagatttaaaacaaactggtggaggtggct 1138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506  aagatgacatatttctagttagcgctatgaaagatttaaaacaaactggtggaggtggct 447


Query: 1139 ttatgacagaattcggtgcagtctccaatggaaccaattcaattgaaatgttgaattacc 1198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446  ttatgacagaattcggtgcagtctccaatggaaccaattcaattgaaatgttgaattacc 387


Query: 1199 taactggttcagctgataaatatttacaatcatggacttactggcaattaaagtattaca 1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386  taactggttcagctgataaatatttacaatcatggacttactggcaattaaagtattaca 327


Query: 1259 atgatatcactactgcaggttcaacagaatcactctatttaccaaatggtgaattggaca 1318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326  atgatatcactactgcaggttcaacagaatcactctatttaccaaatggtgaattggaca 267


Query: 1319 ttccaaaaattacagccctctctcgtacctatgctcaagcaattgcaggtgtgccattat 1378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266  ttccaaaaattacagccctctctcgtacctatgctcaagcaattgcaggtgtgccattat 207


Query: 1379 caatgtccttcaatcctgccaatagtgatttctcattctcttacaacatcaatacaacca 1438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206  caatgtccttcaatcctgccaatagtgatttctcattctcttacaacatcaatacaacca 147


Query: 1439 tcactcaaccaactcaaatctatttaaatcaagatatttattatccaaatggtttcacta 1498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146  tcactcaaccaactcaaatctatttaaatcaagatatttattatccaaatggtttcacta 87


Query: 1499 caaatattataactggtactgctactgtttcaatccctc 1537
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 86   caaatattataactggtactgctactgtttcaatccctc 48

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,752,831,964
Number of extensions: 102282323
Number of successful extensions: 8019983
Number of sequences better than 10.0: 54
Length of query: 1603
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1579
Effective length of database: 96,409,374,237
Effective search space: 152230401920223
Effective search space used: 152230401920223
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U15828-1 (Contig-U15828-1Q) /CSM_Contig/Contig-U15828-1Q.Seq.d
         (1603 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047321_1(AB047321|pid:none) Cyanea nozakii EGCase mRNA for end...   221   5e-79
AP007161_5(AP007161|pid:none) Aspergillus oryzae RIB40 genomic D...   189   3e-52
CP000509_3508(CP000509|pid:none) Nocardioides sp. JS614, complet...   112   4e-36
CP001620_1506(CP001620|pid:none) Corynebacterium kroppenstedtii ...   112   7e-34
FN376290_1(FN376290|pid:none) Schistosoma mansoni genome sequenc...   121   2e-30
FN368038_1(FN368038|pid:none) Schistosoma mansoni genome sequenc...   127   2e-27
FN376290_2(FN376290|pid:none) Schistosoma mansoni genome sequenc...   121   8e-26
FN376054_1(FN376054|pid:none) Schistosoma mansoni genome sequenc...   118   5e-25
FN357556_38(FN357556|pid:none) Schistosoma mansoni genome sequen...   115   5e-24
AE017283_635(AE017283|pid:none) Propionibacterium acnes KPA17120...   115   5e-24
CP001618_2245(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    82   4e-14
AP009493_2234(AP009493|pid:none) Streptomyces griseus subsp. gri...    80   3e-13
AB042327_1(AB042327|pid:none) Rhodococcus sp. C9 gene for C9 end...    78   8e-13
AE010301_251(AE010301|pid:none) Leptospira interrogans serovar L...    76   4e-12
AP008957_2670(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    73   3e-11
FN368400_1(FN368400|pid:none) Schistosoma mansoni genome sequenc...    72   6e-11
CP000351_185(CP000351|pid:none) Leptospira borgpetersenii serova...    72   8e-11
CP000349_192(CP000349|pid:none) Leptospira borgpetersenii serova...    71   1e-10
U39554_1(U39554|pid:none) Rhodococcus sp. endoglycoceramidase II...    69   5e-10
CP000786_2426(CP000786|pid:none) Leptospira biflexa serovar Pato...    67   1e-09
CP000777_2354(CP000777|pid:none) Leptospira biflexa serovar Pato...    67   1e-09
CP000774_833(CP000774|pid:none) Parvibaculum lavamentivorans DS-...    67   1e-09
CP000631_265(CP000631|pid:none) Agrobacterium radiobacter K84 pl...    56   3e-06
FM992692_493(FM992692|pid:none) Candida dubliniensis CD36 chromo...    55   6e-06
CP000496_1024(CP000496|pid:none) Pichia stipitis CBS 6054 chromo...    53   4e-05
BA000030_7515(BA000030|pid:none) Streptomyces avermitilis MA-468...    51   1e-04
AM920431_1069(AM920431|pid:none) Penicillium chrysogenum Wiscons...    51   1e-04
CR380958_409(CR380958|pid:none) Candida glabrata strain CBS138 c...    51   1e-04
CP000934_2696(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    42   0.004
AP007151_1187(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...    46   0.004
CR382128_438(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    45   0.006
FN392322_332(FN392322|pid:none) Pichia pastoris GS115 chromosome...    45   0.010
AE017348_141(AE017348|pid:none) Cryptococcus neoformans var. neo...    42   0.064
AM270360_14(AM270360|pid:none) Aspergillus niger contig An16c008...    42   0.064
AE017348_140(AE017348|pid:none) Cryptococcus neoformans var. neo...    42   0.064
CU928176_643(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    42   0.064
AM920435_384(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    42   0.064
Z56279_4(Z56279|pid:none) T.brockii cglF, cglG, xglS and cglT ge...    42   0.084
CP000075_3305(CP000075|pid:none) Pseudomonas syringae pv. syring...    42   0.084
BX294141_308(BX294141|pid:none) Rhodopirellula baltica SH 1 comp...    41   0.11
AM180355_2619(AM180355|pid:none) Clostridium difficile 630 compl...    41   0.14
BA000004_603(BA000004|pid:none) Bacillus halodurans C-125 DNA, c...    41   0.14
CP000628_3587(CP000628|pid:none) Agrobacterium radiobacter K84 c...    39   0.22
CR382122_479(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    40   0.24
Z37996_1(Z37996|pid:none) S.cerevisiae chromosome IX cosmid 9167.      40   0.24
(P40566) RecName: Full=Uncharacterized glycosyl hydrolase YIR007...    40   0.24
AY151267_2(AY151267|pid:none) Fervidobacterium sp. YNP beta-gluc...    40   0.24
CP000924_1885(CP000924|pid:none) Thermoanaerobacter pseudethanol...    40   0.24
CP000943_1427(CP000943|pid:none) Methylobacterium sp. 4-46, comp...    39   0.42
CR382136_598(CR382136|pid:none) Debaryomyces hansenii strain CBS...    39   0.42
FN376205_1(FN376205|pid:none) Schistosoma mansoni genome sequenc...    39   0.54
CP000360_3037(CP000360|pid:none) Acidobacteria bacterium Ellin34...    39   0.71
DQ923327_1(DQ923327|pid:none) Uncultured Butyrivibrio sp. clone ...    39   0.71
CP001107_2373(CP001107|pid:none) Eubacterium rectale ATCC 33656,...    39   0.71
CP001186_3465(CP001186|pid:none) Bacillus cereus G9842, complete...    32   0.77
AL935261_76(AL935261|pid:none) Lactobacillus plantarum strain WC...    38   0.93
AL844508_187(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.2
CP000934_3236(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    38   1.2
CP000941_2051(CP000941|pid:none) Xylella fastidiosa M12, complet...    38   1.2
CP000568_2108(CP000568|pid:none) Clostridium thermocellum ATCC 2...    38   1.2
AJ275975_1(AJ275975|pid:none) Clostridium thermocellum celO gene...    38   1.2
S20493(S20493)endoglucanase - Clostridium cellulovorans                37   1.6
CP001251_613(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ...    37   1.6
EF428090_1(EF428090|pid:none) Uncultured bacterium clone 4399GL7...    37   1.6
FN363364_1(FN363364|pid:none) Schistosoma mansoni genome sequenc...    37   2.1
(P28621) RecName: Full=Endoglucanase B;          EC=3.2.1.4; Alt...    37   2.1
(P17901) RecName: Full=Endoglucanase A;          EC=3.2.1.4; Alt...    37   2.1
A44815(A44815)cellulase (EC 3.2.1.4) EngB - Clostridium cellulov...    37   2.1
AE000512_1722(AE000512|pid:none) Thermotoga maritima MSB8, compl...    37   2.1
FN375979_1(FN375979|pid:none) Schistosoma mansoni genome sequenc...    37   2.1
CU633865_192(CU633865|pid:none) Podospora anserina genomic DNA c...    37   2.1
CP000282_2988(CP000282|pid:none) Saccharophagus degradans 2-40, ...    37   2.1
CP000969_1058(CP000969|pid:none) Thermotoga sp. RQ2, complete ge...    37   2.1
CP001098_2042(CP001098|pid:none) Halothermothrix orenii H 168, c...    37   2.7
FB802253_1(FB802253|pid:none) Sequence 21526 from Patent WO20080...    37   2.7
CP000685_3835(CP000685|pid:none) Flavobacterium johnsoniae UW101...    37   2.7
AE006641_1827(AE006641|pid:none) Sulfolobus solfataricus P2, com...    37   2.7
FN374283_1(FN374283|pid:none) Schistosoma mansoni genome sequenc...    37   2.7
(O08342) RecName: Full=Endoglucanase A;          EC=3.2.1.4; Alt...    36   3.5
AE016814_203(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    36   3.5
AE009442_1977(AE009442|pid:none) Xylella fastidiosa Temecula1, c...    36   3.5
FN375382_1(FN375382|pid:none) Schistosoma mansoni genome sequenc...    36   3.5
CP000282_2985(CP000282|pid:none) Saccharophagus degradans 2-40, ...    32   4.3
CP001147_1726(CP001147|pid:none) Thermodesulfovibrio yellowstoni...    36   4.6
CP000885_1914(CP000885|pid:none) Clostridium phytofermentans ISD...    36   4.6
CR382139_689(CR382139|pid:none) Debaryomyces hansenii strain CBS...    36   4.6
CP001472_941(CP001472|pid:none) Acidobacterium capsulatum ATCC 5...    36   4.6
FN376284_2(FN376284|pid:none) Schistosoma mansoni genome sequenc...    36   4.6
FN366711_1(FN366711|pid:none) Schistosoma mansoni genome sequenc...    36   4.6
CP000749_4247(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    36   4.6
FN358005_1(FN358005|pid:none) Schistosoma mansoni genome sequenc...    36   4.6
CP001013_2333(CP001013|pid:none) Leptothrix cholodnii SP-6, comp...    36   4.6
CP000909_352(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    35   6.0
CP001251_614(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ...    35   6.0
CP001176_3388(CP001176|pid:none) Bacillus cereus B4264, complete...    30   7.5
AF196890_1(AF196890|pid:none) Fragaria iinumae isolate Fr_ii_PCR...    35   7.8
CP000716_1600(CP000716|pid:none) Thermosipho melanesiensis BI429...    35   7.8
CP000575_1368(CP000575|pid:none) Staphylothermus marinus F1, com...    35   7.8
M94865_1(M94865|pid:none) Cellulomonas fimi beta-glucosidase gen...    35   7.8
BA000001_1206(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ...    35   7.8
CP000771_1530(CP000771|pid:none) Fervidobacterium nodosum Rt17-B...    35   7.8
FB802241_1(FB802241|pid:none) Sequence 21514 from Patent WO20080...    35   7.8

>AB047321_1(AB047321|pid:none) Cyanea nozakii EGCase mRNA for
           endoglycoceramidase, complete cds.
          Length = 503

 Score =  221 bits (564), Expect(2) = 5e-79
 Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
 Frame = +2

Query: 122 IIKVNPANQFFIDQYNRVRLFHGVNVVYKIPPFHPSLEGFDPVTSFSSQDIENLVEWGFN 301
           +I VNP  Q  +D   R R FHG NVV K  P+HPS+EG+D  TSFS  D++ L + G N
Sbjct: 31  LISVNPETQQLVDSLGRERFFHGTNVVVKHKPYHPSVEGYDN-TSFSEVDMKILQDLGLN 89

Query: 302 AVRLGVMWPGVEPVKDEYNQTYLDVMSKLVSEMEDNEIYTLIDFHQDLLSRKYCGEGLPD 481
            +RLG+M PG  P +  YN+TYL ++ ++VS+     IYTL+D HQD++S K+C EG PD
Sbjct: 90  TIRLGMMLPGYVPTRGNYNETYLKIIQEIVSKAAKYGIYTLLDMHQDVMSAKFCVEGFPD 149

Query: 482 WIVSNDTNDSFPSPVAHSYPKNNES-YPSLDQCLNKDFGVYYFSEDVNREFQNLYDNVNG 658
           W V+    D+FP P+   YP N ++ YP    C    +G YYF+E     FQN Y+N +G
Sbjct: 150 WAVNTGNADNFPFPLEDKYPLNLQTGYPYPKDCAKHAWGDYYFTEAAAAAFQNFYNNTDG 209

Query: 659 VQDKFIDYWRQVVNTFKSYDTVLGYEIINEPWGGDIYQNPEYLLKLGYADSK 814
           + D + D+W++    FK Y +V+GYE+INEP+ GDIY++P  ++  G AD +
Sbjct: 210 LLDAWADFWKKTAQGFKDYKSVIGYELINEPFAGDIYRDPSLMIP-GVADER 260

 Score = 98.6 bits (244), Expect(2) = 5e-79
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 3/222 (1%)
 Frame = +1

Query: 850  QKNLLPLYQAVNNAIRELDDQHCVYYEKALTDLFHSYFPSGTPGGVQYNDRQVLSYHIYC 1029
            ++NL P Y  ++ AIR +D+QH +++E    D F + F S  PGG  Y +R VLSYH Y
Sbjct: 259  ERNLAPAYDVIHKAIRTVDEQHSIFFEGVTWDYFAAGF-SKVPGGDAYRNRSVLSYHYYE 317

Query: 1030 ATDRDGNPRHEYVCDGEDDIFLVSAMKDLKQTGGGGFMTEFGAVSNGTNSIEMLNYLTGS 1209
              D +   + E              M+DL++   GGF+TE   V +    +  +  L
Sbjct: 318  PPDFNKKFQFEV------------RMEDLRRLKCGGFLTELLTVGDTAKDMSDMLELFDI 365

Query: 1210 ADKYLQSWTYWQLKYYNDIT--TAGSTESLYLPNGELDIPKITALSRTYAQAIAGVPLSM 1383
             D++ QSW  W  K Y          T+S++   G L    +   +RTY QA+AG  +
Sbjct: 366  CDQHKQSWMGWLYKSYGCYKQHLGCLTDSMHDETGHLRDIVLQNTTRTYPQAVAGHTIGY 425

Query: 1384 SFNPANSDFSFSY-XXXXXXXXXXXXYLNQDIYYPNGFTTNI 1506
             F+     F  S+             Y N+D++Y NG+   +
Sbjct: 426  KFDRITKKFDLSFVVTADCRSTESIVYFNKDLHYSNGYDVTV 467

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,640,069,726
Number of extensions: 56295748
Number of successful extensions: 161827
Number of sequences better than 10.0: 102
Number of HSP's gapped: 161607
Number of HSP's successfully gapped: 117
Length of query: 534
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 401
Effective length of database: 620,718,517
Effective search space: 248908125317
Effective search space used: 248908125317
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.95  gvh: 0.69  alm: 0.47  top: 0.27  tms: 0.00  mit: 0.34  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal

>> prediction for Contig-U15828-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 6
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0