Contig-U15814-1
Contig ID Contig-U15814-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15814-1 (Contig-U15814-1Q) /CSM_Contig/Contig-U15814-1Q.Seq.d
AAAAATTACATCTCAACAATTTAAATTTTTATCACAACATTCTTTTTTTT
TATTATCATGCACAAAAACAACAACAACAATAATTATAGAGAAAATTTTG
AAAAAAAAAAATCTATAGAATTAATAACTGAAAATGAATTTAATAAATTT
ACATTATATAAATTTCAATGTATGGCTGAAGTTGCCAAAGAAATATTAAG
AGATTTATTAAAGGAAAGATATTTAAAAGAAACAGGTAGAGAATGGGANA
ATAATAGTTTTACTGGNGTTAGATATCTAATTCAAAAACAACCAATAAAT
AAAGACTCTTTTGAAATTGGTAGAAAATTAATGAAAGAGTACTTAACAGT
ATTAAAACCCACCTTTAATGGTGATATTGAAATTGATTTTTTAGTTGACA
CACTTCAAATACCAAAAGATCAACAACANCAAGAAAATTGTGATAGAGAA
GCATTGCAATTGAAAGAGGATGGAAATTACTTTTATGGTAAATGTGATTA
TAATAAAGCAGAAGTAATGTATAATGAAGGTTTGAAAATTCGTGGTATTT
CAATGTACATTAAATCAATACTTAGTTTAAATTTATCAACCTGTTTATTG
GCACATTACAATTTCCTTGCAAAATATGGTAATTCCGATGGAGATCTTTT
ATCA----------AAATTTTAAAAATTCAAGGTGAATTATTACAAAGTT
TTGAAATGTTTCAATCTGCATTATTAATTAATTTAATAACAAAAGAAGAA
AGAACAAGTGTTGAAAAAGAATGTTGGGATATTGCTGGTGAATTAAAATT
AAGAATTGATTCTCTTAGACACCATGATCGTAATTCAACTGATAAAATTA
CTGAAATAAATACCACCACAACAACCACCGCCACTTCCCCTACTACTACC
AGTACCACTACCACTACCACTACCACTACTACTACTACTCCAACAGAAAC
AGAGGGAACTACAACTACAACATCACCAATAAGAGATATTTTAAAAGAAG
TTAAAAAATATATTGAACAGAATCCATTAGGGGAGAAATTTCCAAAGGTT
TTAATAAAGAGTGATCAAGATTTATTAAAAGCATTTGATAAACAATCATT
ACAAGAACAATCAAAAATAACTGGATTATCATTTGAACATATTTCAAAGT
TATCATTTTGTAATATGGGATATTCTTTGATGCTTCAATCAAAATTTAGA
GAAGCCTTGCCATACTTTTATGCATCTAAATCATTTTCAGGTTCATTATT
TCAAATGGGTCATATTTTTCAAAGCTCATTAGGTAATGCTGTACCAAAAG
ATGAAAAATTAGCATTATCATTATTTTATCAATCTGCACTTCAAAATGAT
AAATTCCAAGTTCCAAATCTTCAAAACATTAAAGATCCAATAAAGGTAAC
TTATTATCAAAAGAATATGATGGTACCAGAATCTGCTTATCATGTCGGTA
TAATGTTTCAACGTGGTATATATGGTGTTCAAATTGATTTTGAGAAAACT
TTATTTTTCTATAAAATAGCTGCTGATTTTAATCATTTAAATGCATGTAA
TAATTATGGTTCTCTATTGTATCAAGGAATATTAGGTCCTGGAAAAACTA
ATAAAGATCTTGGTTTAGAATACATTAAAAAAGGTGCAGATTTAGGTGAT
GAAAATTGTATTGAAAAGTACTCTCAACTTACAACATCCAAAGAACATGC
AAATTCAGTTAGTTTAAAGGATCATCTTTTAAAATTTTCTAGATGGTTAT
TTAATGAATTTCAATCAATTGAACAATTAAATTTAAATAAAAAGTATGCA
ATAATACTAGAAGAAATAGTTAAATTTAAAGAACAATCATCATCTTCTTC
TTCTGCCTCTTCTTCTACTTCTGCCTCTTCTTTTTCACCATTATCATTTT
CATTTCCTTCTTCTTCTACTTCTTCTCGAAATCAATTAAAAACAAAACAA
TTGGAAAGAATTTTAAAAACATTAGATTACACTAATAAATTTATTGATGG
TTTCAAATCAGTTACTTCAAATCAATCAATAACAATAAATGAAAAATTAA
AATTGGTTTCAAATTTATCAATGGCCTATCAAACGGAATTAAATTTTGTT
TGTTTACCAGGTTTACTTCATGGACAAACTATTGAATTAATTAATCAATT
ATTAAAAGTCCGTCCAAATAATAAACATTTAATAGTTTGTTTTATTGGCT
TACATTTATTAAAACCAACAAAATATAAAAAATGTTTGGAATTAATCAAC
TCTTTAAAGAATGAATGTAAAATTATTACTGAATTAGAGGACAACATTGA
TTTAAGTAAACTAGATTTAAATTCAACCTCAAATTCAACCTTGACATATG
ATTTAAATTTTTTAAAAAGTATGATTCATTTATTGATGGGTGATTTTAAA
TTAGGTTTAGAAACATTAGATTTATGTATTGAAGATAGTGGTGCTGGTGC
TGGTGTTGGTGTAGTTAATGAATATTTCTATTTCTATAAAGCATTTGCAT
TGGATTGTTTAAATCATTTAGAAACAAATATTGAAACAAAATATTCATCA
GAATCATTTTATTTAAAATATTTAAGTAATGCTCCACTAGATGGATTCAG
AGTACCAGATGCACTCTTAAGACTATCAATAATCAACTCTGAAAAAAATA
AAAAAATTAATTCATTAGAATTCCTTCAAAAATTTAAAGAATATAAGAAA
TTACCAATCAATGATTTGGTTAATTTTAACCATTATATTTTTTCATCTGC
AGAATTTGATAAACAAATGATATTCCAACAAAATTTAATCTCAAAAATTA
CTCCATAAAATAATTATTTCTTTCACTATTTCAATTTCTTTTATTTTTCA
CATTGGTTTCATTTTTAAATTTAATATAAAAAAAAG

Gap gap included
Contig length 2876
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4309846
End point 4306965
Strand (PLUS/MINUS) MINUS
Number of clones 24
Number of EST 32
Link to clone list U15814
List of clone(s)

est1=VHL553F,1,510
est2=AHQ164F,8,440
est3=SHJ334F,8,442
est4=VHA673F,8,443
est5=VHB695F,8,490
est6=VHM486F,58,637
est7=VHE454F,59,654
est8=SFH548F,655,1477
est9=SFI148F,655,1094
est10=AHA121E,1087,1741
est11=VSJ176E,1092,1778
est12=VSI670E,1105,1778
est13=VSI675E,1105,1777
est14=VSJ234E,1105,1788
est15=VSH152F,1115,1661
est16=VSH568E,1123,1736
est17=VSH575E,1123,1609
est18=VSI705E,1124,1788
est19=FC-BE17E,1139,1831
est20=VHM486Z,1139,1802
est21=VSC727Z,1231,1810
est22=VSC363Z,1291,1809
est23=VSB519Z,1301,1808
est24=SFI148Z,1351,1834
est25=VSB447Z,1392,1809
est26=SLD169Z,1396,1889
est27=SFH548Z,1476,1938
est28=VHA673Z,1854,2610
est29=VHL553Z,1941,2612
est30=VHE454Z,2078,2656
est31=VHB695Z,2108,2876
est32=AHQ164Z,2208,2845
Translated Amino Acid sequence
knyisti*IFITTFFFFIIMHKNNNNNNYRENFEKKKSIELITENEFNKFTLYKFQCMAE
VAKEILRDLLKERYLKETGREWXNNSFTGVRYLIQKQPINKDSFEIGRKLMKEYLTVLKP
TFNGDIEIDFLVDTLQIPKDQQXQENCDREALQLKEDGNYFYGKCDYNKAEVMYNEGLKI
RGISMYIKSILSLNLSTCLLAHYNFLAKYGNSDGDLLS---

---ILKIQGELLQSFEMFQSALLINLITKEERTSVEKECWDIAGELKLRIDSLRHHDRNS
TDKITEINTTTTTTATSPTTTSTTTTTTTTTTTTPTETEGTTTTTSPIRDILKEVKKYIE
QNPLGEKFPKVLIKSDQDLLKAFDKQSLQEQSKITGLSFEHISKLSFCNMGYSLMLQSKF
REALPYFYASKSFSGSLFQMGHIFQSSLGNAVPKDEKLALSLFYQSALQNDKFQVPNLQN
IKDPIKVTYYQKNMMVPESAYHVGIMFQRGIYGVQIDFEKTLFFYKIAADFNHLNACNNY
GSLLYQGILGPGKTNKDLGLEYIKKGADLGDENCIEKYSQLTTSKEHANSVSLKDHLLKF
SRWLFNEFQSIEQLNLNKKYAIILEEIVKFKEQSSSSSSASSSTSASSFSPLSFSFPSSS
TSSRNQLKTKQLERILKTLDYTNKFIDGFKSVTSNQSITINEKLKLVSNLSMAYQTELNF
VCLPGLLHGQTIELINQLLKVRPNNKHLIVCFIGLHLLKPTKYKKCLELINSLKNECKII
TELEDNIDLSKLDLNSTSNSTLTYDLNFLKSMIHLLMGDFKLGLETLDLCIEDSGAGAGV
GVVNEYFYFYKAFALDCLNHLETNIETKYSSESFYLKYLSNAPLDGFRVPDALLRLSIIN
SEKNKKINSLEFLQKFKEYKKLPINDLVNFNHYIFSSAEFDKQMIFQQNLISKITP*nny
ffhyfnffyfshwfhf*i*ykkk


Translated Amino Acid sequence (All Frames)
Frame A:
knyisti*IFITTFFFFIIMHKNNNNNNYRENFEKKKSIELITENEFNKFTLYKFQCMAE
VAKEILRDLLKERYLKETGREWXNNSFTGVRYLIQKQPINKDSFEIGRKLMKEYLTVLKP
TFNGDIEIDFLVDTLQIPKDQQXQENCDREALQLKEDGNYFYGKCDYNKAEVMYNEGLKI
RGISMYIKSILSLNLSTCLLAHYNFLAKYGNSDGDLLS---

---kf*kfkvnyykvlkcfnlhy*li**qkkkeqvlkknvgillvn*n*elilldtmivi
qlikllk*ippqqppplplllpvplplplplllllqqkqrelqlqhhq*eif*kklknil
nrih*grnfqrf**rvikiy*khlinnhyknnqk*ldyhlnifqsyhfviwdil*cfnqn
lekpchtfmhlnhfqvhyfkwviffkah*vmlyqkmkn*hyhyfinlhfkminskfqifk
tlkiq*r*liikri*wyqnllimsv*cfnvvymvfklilrklyfsik*llilii*mhvii
mvlycikey*vleklikilv*ntlkkvqi*vmkivlkstlnlqhpknmqiqlv*riif*n
fldgylmnfnqlnn*i*iksmq*y*kk*lnlknnhhllllplllllpllfhhyhfhflll
llllein*kqnnwkef*kh*itlinllmvsnqllqinq*q*mkn*nwfqiyqwpikrn*i
lfvyqvyfmdklln*liny*ksvqiini**fvllayiy*nqqniknvwn*stl*rmnvkl
lln*rttli*vn*i*iqpqiqp*hmi*if*kv*fiy*wviln*v*kh*iyvlkivvlvlv
lv*lmnisisikhlhwiv*ii*kqilkqnihqnhfi*ni*vmlh*mdseyqmhs*dyq*s
tlkkikklih*nsfknlknirnyqsmiwliltiiffhlqnlink*ysnki*sqkllhkii
isftisisfifhigfifkfnikk

Frame B:
kitsqqfkflsqhsffllsctkttttiiiekilkkknl*n**lkmnlinlhyinfnvwlk
lpkky*eiy*rkdi*kkqvengxiivllxldi*fknnq*iktllklven**kst*qy*np
plmvilklif*lthfkyqkinnxkkiviekhcn*krmeitfmvnviiikqk*cimkv*kf
vvfqctlnqylv*iyqpvywhitislqnmvipmeify---

---nfknsr*iitkf*nvsiciin*fnnkrrknkc*krmlgycw*ikikn*fs*tp*s*f
n**ny*nkyhhnnhrhfpyyyqyhyhyhyhyyyysnrnrgnynynitnkryfkrs*kiy*
tesirgeiskgfnke*srfiksi**tiitrtiknnwiii*tyfkviil*ygiffdasiki
*rslaillci*iifrfiisngsyfsklir*cctkr*kisiiiilsictsk**ipsskssk
h*rsnkgnllskeydgtriclscrynvstwyiwcsn*f*enfifl*nsc*f*sfkcm**l
wfsivsrnirswkn**rswfrih*krcrfr**kly*kvlstyniqrtckfs*fkgssfki
f*mvi**isin*tikfk*kvcnntrrns*i*rtiiifffclffyfclffftiiifisfff
yffsksiknktigknfknirlh**iy*wfqisyfksinnnk*kikigfkfinglsngikf
clftrftswtny*in*siikspsk**tfnslfywltfiktnki*kmfginqlfke*m*ny
y*irgqh*fk*trfkfnlkfnldi*fkffkkydsfidg*f*irfrnirfmy*r*wcwcwc
wcs**iflfl*siciglfksfrnky*nkifiriilfkifk*cstrwiqstrctlktinnq
l*kk*kn*firipski*ri*eitnq*fg*f*plyfficri**tndiptkfnlknysik*l
flslfqfllfftlvsflnli*kk

Frame C:
klhlnnlnfyhnilffyyhaqkqqqq*l*rkf*kkkiyrinn*k*i**iyii*ismyg*s
cqrnikrfikgkifkrnr*rmgx**fywx*isnskttnk*rlf*nw*kinervlnsikth
l*w*y*n*ffs*htsntkrsttxrkl**rsiaiergwklllw*m*l**srsnv**rfens
wyfnvh*int*fkfinlfigtlqfpckiw*frwrsfi---

---ILKIQGELLQSFEMFQSALLINLITKEERTSVEKECWDIAGELKLRIDSLRHHDRNS
TDKITEINTTTTTTATSPTTTSTTTTTTTTTTTTPTETEGTTTTTSPIRDILKEVKKYIE
QNPLGEKFPKVLIKSDQDLLKAFDKQSLQEQSKITGLSFEHISKLSFCNMGYSLMLQSKF
REALPYFYASKSFSGSLFQMGHIFQSSLGNAVPKDEKLALSLFYQSALQNDKFQVPNLQN
IKDPIKVTYYQKNMMVPESAYHVGIMFQRGIYGVQIDFEKTLFFYKIAADFNHLNACNNY
GSLLYQGILGPGKTNKDLGLEYIKKGADLGDENCIEKYSQLTTSKEHANSVSLKDHLLKF
SRWLFNEFQSIEQLNLNKKYAIILEEIVKFKEQSSSSSSASSSTSASSFSPLSFSFPSSS
TSSRNQLKTKQLERILKTLDYTNKFIDGFKSVTSNQSITINEKLKLVSNLSMAYQTELNF
VCLPGLLHGQTIELINQLLKVRPNNKHLIVCFIGLHLLKPTKYKKCLELINSLKNECKII
TELEDNIDLSKLDLNSTSNSTLTYDLNFLKSMIHLLMGDFKLGLETLDLCIEDSGAGAGV
GVVNEYFYFYKAFALDCLNHLETNIETKYSSESFYLKYLSNAPLDGFRVPDALLRLSIIN
SEKNKKINSLEFLQKFKEYKKLPINDLVNFNHYIFSSAEFDKQMIFQQNLISKITP*nny
ffhyfnffyfshwfhf*i*ykkk

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15814-1 (Contig-U15814-1Q)
/CSM_Contig/Contig-U15814-1Q.Seq.d
(2886 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15814-1 (Contig-U15814-1Q) /CSM_Contig/Conti... 1788 0.0
Contig-U07468-1 (Contig-U07468-1Q) /CSM_Contig/Conti... 46 3e-04
Contig-U15918-1 (Contig-U15918-1Q) /CSM_Contig/Conti... 42 0.005
Contig-U16451-1 (Contig-U16451-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U15750-1 (Contig-U15750-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U15709-1 (Contig-U15709-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U15087-1 (Contig-U15087-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U15072-1 (Contig-U15072-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U14948-1 (Contig-U14948-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U05152-1 (Contig-U05152-1Q) /CSM_Contig/Conti... 36 0.29

>Contig-U15814-1 (Contig-U15814-1Q) /CSM_Contig/Contig-U15814-1Q.Seq.d
Length = 2886

Score = 1788 bits (902), Expect = 0.0
Identities = 902/902 (100%)
Strand = Plus / Plus


Query: 940 ccaacagaaacagagggaactacaactacaacatcaccaataagagatattttaaaagaa 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 ccaacagaaacagagggaactacaactacaacatcaccaataagagatattttaaaagaa 999


Query: 1000 gttaaaaaatatattgaacagaatccattaggggagaaatttccaaaggttttaataaag 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gttaaaaaatatattgaacagaatccattaggggagaaatttccaaaggttttaataaag 1059


Query: 1060 agtgatcaagatttattaaaagcatttgataaacaatcattacaagaacaatcaaaaata 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 agtgatcaagatttattaaaagcatttgataaacaatcattacaagaacaatcaaaaata 1119


Query: 1120 actggattatcatttgaacatatttcaaagttatcattttgtaatatgggatattctttg 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 actggattatcatttgaacatatttcaaagttatcattttgtaatatgggatattctttg 1179


Query: 1180 atgcttcaatcaaaatttagagaagccttgccatacttttatgcatctaaatcattttca 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 atgcttcaatcaaaatttagagaagccttgccatacttttatgcatctaaatcattttca 1239


Query: 1240 ggttcattatttcaaatgggtcatatttttcaaagctcattaggtaatgctgtaccaaaa 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 ggttcattatttcaaatgggtcatatttttcaaagctcattaggtaatgctgtaccaaaa 1299


Query: 1300 gatgaaaaattagcattatcattattttatcaatctgcacttcaaaatgataaattccaa 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 gatgaaaaattagcattatcattattttatcaatctgcacttcaaaatgataaattccaa 1359


Query: 1360 gttccaaatcttcaaaacattaaagatccaataaaggtaacttattatcaaaagaatatg 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 gttccaaatcttcaaaacattaaagatccaataaaggtaacttattatcaaaagaatatg 1419


Query: 1420 atggtaccagaatctgcttatcatgtcggtataatgtttcaacgtggtatatatggtgtt 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 atggtaccagaatctgcttatcatgtcggtataatgtttcaacgtggtatatatggtgtt 1479


Query: 1480 caaattgattttgagaaaactttatttttctataaaatagctgctgattttaatcattta 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 caaattgattttgagaaaactttatttttctataaaatagctgctgattttaatcattta 1539


Query: 1540 aatgcatgtaataattatggttctctattgtatcaaggaatattaggtcctggaaaaact 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 aatgcatgtaataattatggttctctattgtatcaaggaatattaggtcctggaaaaact 1599


Query: 1600 aataaagatcttggtttagaatacattaaaaaaggtgcagatttaggtgatgaaaattgt 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 aataaagatcttggtttagaatacattaaaaaaggtgcagatttaggtgatgaaaattgt 1659


Query: 1660 attgaaaagtactctcaacttacaacatccaaagaacatgcaaattcagttagtttaaag 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1660 attgaaaagtactctcaacttacaacatccaaagaacatgcaaattcagttagtttaaag 1719


Query: 1720 gatcatcttttaaaattttctagatggttatttaatgaatttcaatcaattgaacaatta 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 gatcatcttttaaaattttctagatggttatttaatgaatttcaatcaattgaacaatta 1779


Query: 1780 aatttaaataaaaagtatgcaataatactagaagaaatagttaaatttaaagaacaatca 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1780 aatttaaataaaaagtatgcaataatactagaagaaatagttaaatttaaagaacaatca 1839


Query: 1840 tc 1841
||
Sbjct: 1840 tc 1841


Score = 1566 bits (790), Expect = 0.0
Identities = 869/889 (97%)
Strand = Plus / Plus


Query: 1 aaaaattacatctcaacaatttaaatttttatcacaacattcnnnnnnnnnattatcatg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 aaaaattacatctcaacaatttaaatttttatcacaacattctttttttttattatcatg 60


Query: 61 cacaaaaacaacaacaacaataattatagagaaaattttgnnnnnnnnnnntctatagaa 120
|||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 cacaaaaacaacaacaacaataattatagagaaaattttgaaaaaaaaaaatctatagaa 120


Query: 121 ttaataactgaaaatgaatttaataaatttacattatataaatttcaatgtatggctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaataactgaaaatgaatttaataaatttacattatataaatttcaatgtatggctgaa 180


Query: 181 gttgccaaagaaatattaagagatttattaaaggaaagatatttaaaagaaacaggtaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttgccaaagaaatattaagagatttattaaaggaaagatatttaaaagaaacaggtaga 240


Query: 241 gaatggganaataatagttttactggngttagatatctaattcaaaaacaaccaataaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaatggganaataatagttttactggngttagatatctaattcaaaaacaaccaataaat 300


Query: 301 aaagactcttttgaaattggtagaaaattaatgaaagagtacttaacagtattaaaaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaagactcttttgaaattggtagaaaattaatgaaagagtacttaacagtattaaaaccc 360


Query: 361 acctttaatggtgatattgaaattgattttttagttgacacacttcaaataccaaaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acctttaatggtgatattgaaattgattttttagttgacacacttcaaataccaaaagat 420


Query: 421 caacaacancaagaaaattgtgatagagaagcattgcaattgaaagaggatggaaattac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caacaacancaagaaaattgtgatagagaagcattgcaattgaaagaggatggaaattac 480


Query: 481 ttttatggtaaatgtgattataataaagcagaagtaatgtataatgaaggtttgaaaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttatggtaaatgtgattataataaagcagaagtaatgtataatgaaggtttgaaaatt 540


Query: 541 cgtggtatttcaatgtacattaaatcaatacttagtttaaatttatcaacctgtttattg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cgtggtatttcaatgtacattaaatcaatacttagtttaaatttatcaacctgtttattg 600


Query: 601 gcacattacaatttccttgcaaaatatggtaattccgatggagatcttttatcannnnnn 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcacattacaatttccttgcaaaatatggtaattccgatggagatcttttatcannnnnn 660


Query: 661 nnnnaaattttaaaaattcaaggtgaattattacaaagttttgaaatgtttcaatctgca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 nnnnaaattttaaaaattcaaggtgaattattacaaagttttgaaatgtttcaatctgca 720


Query: 721 ttattaattaatttaataacaaaagaagaaagaacaagtgttgaaaaagaatgttgggat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttattaattaatttaataacaaaagaagaaagaacaagtgttgaaaaagaatgttgggat 780


Query: 781 attgctggtgaattaaaattaagaattgattctcttagacaccatgatcgtaattcaact 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 attgctggtgaattaaaattaagaattgattctcttagacaccatgatcgtaattcaact 840


Query: 841 gataaaattactgaaataaataccaccacaacaaccaccgccacttccc 889
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gataaaattactgaaataaataccaccacaacaaccaccgccacttccc 889


Score = 1417 bits (715), Expect = 0.0
Identities = 715/715 (100%)
Strand = Plus / Plus


Query: 1927 cgaaatcaattaaaaacaaaacaattggaaagaattttaaaaacattagattacactaat 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1927 cgaaatcaattaaaaacaaaacaattggaaagaattttaaaaacattagattacactaat 1986


Query: 1987 aaatttattgatggtttcaaatcagttacttcaaatcaatcaataacaataaatgaaaaa 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987 aaatttattgatggtttcaaatcagttacttcaaatcaatcaataacaataaatgaaaaa 2046


Query: 2047 ttaaaattggtttcaaatttatcaatggcctatcaaacggaattaaattttgtttgttta 2106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2047 ttaaaattggtttcaaatttatcaatggcctatcaaacggaattaaattttgtttgttta 2106


Query: 2107 ccaggtttacttcatggacaaactattgaattaattaatcaattattaaaagtccgtcca 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2107 ccaggtttacttcatggacaaactattgaattaattaatcaattattaaaagtccgtcca 2166


Query: 2167 aataataaacatttaatagtttgttttattggcttacatttattaaaaccaacaaaatat 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2167 aataataaacatttaatagtttgttttattggcttacatttattaaaaccaacaaaatat 2226


Query: 2227 aaaaaatgtttggaattaatcaactctttaaagaatgaatgtaaaattattactgaatta 2286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2227 aaaaaatgtttggaattaatcaactctttaaagaatgaatgtaaaattattactgaatta 2286


Query: 2287 gaggacaacattgatttaagtaaactagatttaaattcaacctcaaattcaaccttgaca 2346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2287 gaggacaacattgatttaagtaaactagatttaaattcaacctcaaattcaaccttgaca 2346


Query: 2347 tatgatttaaattttttaaaaagtatgattcatttattgatgggtgattttaaattaggt 2406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2347 tatgatttaaattttttaaaaagtatgattcatttattgatgggtgattttaaattaggt 2406


Query: 2407 ttagaaacattagatttatgtattgaagatagtggtgctggtgctggtgttggtgtagtt 2466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2407 ttagaaacattagatttatgtattgaagatagtggtgctggtgctggtgttggtgtagtt 2466


Query: 2467 aatgaatatttctatttctataaagcatttgcattggattgtttaaatcatttagaaaca 2526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2467 aatgaatatttctatttctataaagcatttgcattggattgtttaaatcatttagaaaca 2526


Query: 2527 aatattgaaacaaaatattcatcagaatcattttatttaaaatatttaagtaatgctcca 2586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2527 aatattgaaacaaaatattcatcagaatcattttatttaaaatatttaagtaatgctcca 2586


Query: 2587 ctagatggattcagagtaccagatgcactcttaagactatcaataatcaactctg 2641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2587 ctagatggattcagagtaccagatgcactcttaagactatcaataatcaactctg 2641


Score = 315 bits (159), Expect = 2e-85
Identities = 159/159 (100%)
Strand = Plus / Plus


Query: 2657 ttaattcattagaattccttcaaaaatttaaagaatataagaaattaccaatcaatgatt 2716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 ttaattcattagaattccttcaaaaatttaaagaatataagaaattaccaatcaatgatt 2716


Query: 2717 tggttaattttaaccattatattttttcatctgcagaatttgataaacaaatgatattcc 2776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2717 tggttaattttaaccattatattttttcatctgcagaatttgataaacaaatgatattcc 2776


Query: 2777 aacaaaatttaatctcaaaaattactccataaaataatt 2815
|||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 aacaaaatttaatctcaaaaattactccataaaataatt 2815


>Contig-U07468-1 (Contig-U07468-1Q) /CSM_Contig/Contig-U07468-1Q.Seq.d
Length = 237

Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus


Query: 2439 tggtgctggtgctggtgttggtg 2461
|||||||||||||||||||||||
Sbjct: 71 tggtgctggtgctggtgttggtg 49


>Contig-U15918-1 (Contig-U15918-1Q) /CSM_Contig/Contig-U15918-1Q.Seq.d
Length = 1467

Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 958 actacaactacaacatcacca 978
|||||||||||||||||||||
Sbjct: 468 actacaactacaacatcacca 488


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,761
Number of Sequences: 8402
Number of extensions: 104761
Number of successful extensions: 19347
Number of sequences better than 10.0: 984
length of query: 2886
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2869
effective length of database: 7,932,708
effective search space: 22758939252
effective search space used: 22758939252
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.19
Homology vs DNA
Query= Contig-U15814-1 (Contig-U15814-1Q) /CSM_Contig/Contig-U15814-1Q.Seq.d
(2886 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ436948) Dictyostelium discoideum cDNA clone:ddv32a20, 3' ... 1318 0.0 2
(BJ443920) Dictyostelium discoideum cDNA clone:ddv54i13, 3' ... 1144 0.0 3
(BJ437648) Dictyostelium discoideum cDNA clone:ddv34m24, 3' ... 1039 0.0 2
(BJ351187) Dictyostelium discoideum cDNA clone:dda42h12, 3' ... 995 0.0 2
(BJ409485) Dictyostelium discoideum cDNA clone:dds42d09, 3' ... 835 0.0 2
(BJ357483) Dictyostelium discoideum cDNA clone:dda63o15, 3' ... 833 0.0 2
(BJ425497) Dictyostelium discoideum cDNA clone:ddv55l22, 5' ... 1007 0.0 2
(BJ420548) Dictyostelium discoideum cDNA clone:ddv39l14, 5' ... 999 0.0 2
(BJ444294) Dictyostelium discoideum cDNA clone:ddv55l22, 3' ... 1017 0.0 1
(BJ388843) Dictyostelium discoideum cDNA clone:dds16o11, 5' ... 575 0.0 2
(BJ402600) Dictyostelium discoideum cDNA clone:dds17o11, 3' ... 890 0.0 2
(BJ439173) Dictyostelium discoideum cDNA clone:ddv39l14, 3' ... 890 0.0 1
(BJ425089) Dictyostelium discoideum cDNA clone:ddv54i13, 5' ... 654 0.0 3
(BJ333342) Dictyostelium discoideum cDNA clone:dda42h12, 5' ... 702 0.0 2
(BJ419064) Dictyostelium discoideum cDNA clone:ddv34m24, 5' ... 624 0.0 3
(BJ338977) Dictyostelium discoideum cDNA clone:dda63o15, 5' ... 581 0.0 3
(BJ396263) Dictyostelium discoideum cDNA clone:dds42d09, 5' ... 569 0.0 3
(BJ402349) Dictyostelium discoideum cDNA clone:dds16o11, 3' ... 690 0.0 1
(BJ389085) Dictyostelium discoideum cDNA clone:dds17o11, 5' ... 389 0.0 2
(BJ418426) Dictyostelium discoideum cDNA clone:ddv32a20, 5' ... 527 0.0 3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 48 2e-12 21
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 2e-10 24
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 1e-08 24
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 40 7e-08 24
(AX344550) Sequence 1 from Patent WO0200932. 36 8e-08 22
(AE017263) Mesoplasma florum L1 complete genome. 36 1e-07 24
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 44 1e-07 20
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 38 2e-07 12
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 44 2e-07 22
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 36 2e-07 25
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 44 3e-07 21
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 3e-07 22
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 5e-07 10
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 38 7e-07 19
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 42 1e-06 24
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 1e-06 22
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 42 2e-06 18
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 34 2e-06 21
(CP000727) Clostridium botulinum A str. Hall, complete genome. 42 2e-06 20
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 42 3e-06 20
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 4e-06 18
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 5e-06 15
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 5e-06 15
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 6e-06 21
(CP000382) Clostridium novyi NT, complete genome. 40 6e-06 24
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 34 1e-05 23
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 1e-05 18
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 1e-05 21
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 1e-05 11
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 42 2e-05 13
(AX356494) Sequence 128 from Patent WO0181622. 42 2e-05 16
(AX347027) Sequence 2098 from Patent WO0200928. 42 2e-05 16
(AL844509) Plasmodium falciparum chromosome 13. 40 2e-05 18
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 40 2e-05 19
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 3e-05 23
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 3e-05 19
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 34 3e-05 24
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co... 38 5e-05 13
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 38 5e-05 20
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 38 5e-05 21
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 40 6e-05 20
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 40 6e-05 14
(CP000312) Clostridium perfringens SM101, complete genome. 36 6e-05 25
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 6e-05 17
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 38 6e-05 18
(EF568108) Glossina pallidipes salivary gland hypertrophy vi... 42 7e-05 20
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 42 7e-05 19
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 34 8e-05 24
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 32 8e-05 22
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 36 9e-05 15
(DD010735) Diagnosis of known genetic Parameters within the ... 42 9e-05 19
(EL496233) G01_PFBAMHI-L-T3-PLATE9A.AB1 Blood stage Plasmodi... 50 1e-04 3
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 1e-04 23
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 1e-04 15
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 1e-04 21
(DD010736) Diagnosis of known genetic Parameters within the ... 40 1e-04 17
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ... 36 1e-04 20
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 38 1e-04 19
(CS468864) Sequence 55 from Patent EP1748080. 40 2e-04 22
(CS419341) Sequence 55 from Patent WO2006094836. 40 2e-04 22
(AE017245) Mycoplasma synoviae 53, complete genome. 34 2e-04 25
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 36 2e-04 13
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr... 36 2e-04 12
(CP000993) Borrelia recurrentis A1, complete genome. 38 2e-04 22
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 2e-04 13
(AX344560) Sequence 11 from Patent WO0200932. 40 2e-04 20
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69... 32 3e-04 22
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 3e-04 24
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 38 3e-04 21
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 36 3e-04 25
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 40 3e-04 22
(CP000025) Campylobacter jejuni RM1221, complete genome. 36 3e-04 23
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 3e-04 10
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 38 3e-04 15
(AC135415) Medicago truncatula clone mth2-10b9, complete seq... 40 3e-04 10
(CU695060) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4e-04 14
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 34 4e-04 13
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81... 38 4e-04 16
(CP000395) Borrelia afzelii PKo, complete genome. 36 4e-04 21
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 36 5e-04 19
(DQ832718) Phytophthora ramorum mitochondrion, complete genome. 36 5e-04 12
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8... 34 6e-04 21
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 7e-04 22
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 44 8e-04 19
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 36 8e-04 13
(AF165818) Guillardia theta nucleomorph chromosome 1, comple... 34 8e-04 20
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion... 38 8e-04 12
(AE015450) Mycoplasma gallisepticum strain R complete genome. 36 8e-04 25
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 42 8e-04 22
(CP000361) Arcobacter butzleri RM4018, complete genome. 54 8e-04 19
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 38 9e-04 19
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 36 9e-04 18
(BX255950) Zebrafish DNA sequence from clone CH211-250K6 in ... 38 0.001 10
(AX345954) Sequence 1025 from Patent WO0200928. 34 0.001 9
(AJ010592) Guillardia theta DNA for complete sequence of nuc... 36 0.001 19
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.001 20
(BD061520) Genome DNA of symbiotic bacteria of aphid. 36 0.001 24
(AR409405) Sequence 1 from patent US 6632935. 36 0.001 24
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 36 0.001 24
(BX323018) Zebrafish DNA sequence from clone DKEYP-77B4 in l... 36 0.001 14
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.001 22
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 36 0.001 20
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 34 0.001 23
(CR394545) Zebrafish DNA sequence from clone CH211-103E6 in ... 40 0.001 13
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 44 0.001 21
(AY531391) Schizaphis graminum mitochondrion, complete genome. 38 0.001 8
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.002 11
(AX344555) Sequence 6 from Patent WO0200932. 38 0.002 22
(AL035476) Plasmodium falciparum MAL4P3. 34 0.002 21
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 38 0.002 21
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 0.002 20
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 0.002 19
(CP000976) Borrelia duttonii Ly, complete genome. 38 0.002 20
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 0.002 14
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.003 16
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 0.003 22
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 38 0.003 20
(FB571361) Sequence 228 from Patent EP1865317. 34 0.003 15
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 40 0.003 16
(EL499839) SEQ_010203_B03_PFL_PLATE1A_03.AB1 Blood stage Pla... 50 0.003 2
(AX392734) Sequence 24 from Patent WO0212526. 32 0.003 12
(AR707081) Sequence 24 from patent US 6933145. 32 0.003 12
(CT009607) Mouse DNA sequence from clone RP23-134I10 on chro... 38 0.004 11
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.005 22
(AE017308) Mycoplasma mobile 163K complete genome. 40 0.005 19
(AL034558) Plasmodium falciparum MAL3P2. 32 0.006 18
(CR382138) Debaryomyces hansenii strain CBS767 chromosome F ... 38 0.006 23
(CR933780) Zebrafish DNA sequence from clone DKEY-60F6 in li... 38 0.006 14
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 38 0.007 25
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 38 0.007 20
(AY583786) Micropsectra radialis cytochrome c oxidase subuni... 54 0.007 2
(CU571258) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 0.007 11
(AL844506) Plasmodium falciparum chromosome 7. 38 0.008 16
(CP000728) Clostridium botulinum F str. Langeland, complete ... 40 0.008 21
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple... 38 0.008 21
(EA102652) Sequence 35 from patent US 7195870. 46 0.008 7
(BD460304) Diagnosis of Diseases Associated with Cell Cycle. 46 0.008 7
(BD452226) Diagnosis of Diseases Associated with Cell Cycle. 46 0.008 7
(AX323555) Sequence 43 from Patent WO0192565. 46 0.008 7
(AX277872) Sequence 35 from Patent WO0177375. 46 0.008 7
(AX251840) Sequence 101 from Patent WO0168911. 46 0.008 7
(AE001413) Plasmodium falciparum 3D7 chromosome 2 section 50... 50 0.010 4
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet... 34 0.010 23
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8... 38 0.010 18
(AM422018) Candidatus Phytoplasma australiense complete genome. 38 0.011 18
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 36 0.011 23
(AX641671) Sequence 2861 from Patent WO0101118. 38 0.011 12
(Z93396) Caenorhabditis elegans Cosmid ZC15. 34 0.011 11
(AC192931) Pan troglodytes BAC clone CH251-578O18 from chrom... 40 0.011 13
(AM180355) Clostridium difficile 630 complete genome. 36 0.011 23
(AX344566) Sequence 17 from Patent WO0200932. 38 0.012 21
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 0.012 10
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.012 18
(AC149577) Medicago truncatula chromosome 2 BAC clone mth2-1... 36 0.013 12
(DJ387407) Diagnosis of Diseases Associated with Apoptosis. 30 0.013 7
(AX346220) Sequence 1291 from Patent WO0200928. 30 0.013 7
(AX281315) Sequence 57 from Patent WO0177164. 30 0.013 7
(AF275249) Schizaphis graminum 12S small subunit ribosomal R... 38 0.014 6
(CU693456) Zebrafish DNA sequence from clone CH73-382G4 in l... 42 0.014 8
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 32 0.014 25
(AY583798) Orthocladius saxosus voucher EW160 cytochrome c o... 44 0.014 4
(AL034556) Plasmodium falciparum MAL3P5. 34 0.015 11
(CP000742) Methanococcus vannielii SB, complete genome. 38 0.015 19
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 32 0.016 21
(AF288092) Naegleria gruberi mitochondrial DNA, complete gen... 34 0.018 14
(AC079997) Homo sapiens BAC clone RP11-748B21 from 2, comple... 36 0.018 11
(AY486109) Anopheles leesoni cytochrome oxidase subunit II (... 50 0.018 2
(AE017243) Mycoplasma hyopneumoniae J, complete genome. 38 0.018 23
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.019 20
(AJ512741) Anopheles fluviatilis U mitochondrial partial COI... 50 0.019 2
(AJ512740) Anopheles fluviatilis T mitochondrial partial COI... 50 0.019 2
(DQ383279) Anopheles fluviatilis S haplotype 2 cytochrome ox... 50 0.020 2
(DQ383278) Anopheles fluviatilis S haplotype 1 cytochrome ox... 50 0.020 2
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome. 38 0.020 16
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se... 36 0.020 24
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.020 23
(AC166410) Bos taurus clone CH240-185L16, WORKING DRAFT SEQU... 38 0.020 12
(AC146562) Medicago truncatula clone mth2-14d10, complete se... 38 0.021 12
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.021 23
(AY160107) Dictyostelium discoideum nucleotide exchange fact... 38 0.022 5
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 0.024 22
(CS468863) Sequence 54 from Patent EP1748080. 40 0.024 21
(CS419340) Sequence 54 from Patent WO2006094836. 40 0.024 21
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ... 34 0.024 18
(BJ331436) Dictyostelium discoideum cDNA clone:dda35i07, 5' ... 30 0.024 5
(AY583800) Lauterborniella agrayloides voucher To32 cytochro... 46 0.025 3
(CP000013) Borrelia garinii PBi, complete genome. 38 0.025 20
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 40 0.026 22
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 0.026 19
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 38 0.027 11
(CP000029) Staphylococcus epidermidis RP62A, complete genome. 36 0.028 22
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 46 0.028 19
(AC111933) Rattus norvegicus clone CH230-155D1, WORKING DRAF... 44 0.029 11
(AC170024) Bos taurus clone CH240-213L13, WORKING DRAFT SEQU... 38 0.029 12
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio... 32 0.030 15
(EF067921) Thalassiosira pseudonana chloroplast, complete ge... 34 0.030 15
(AC145470) Medicago truncatula chromosome 8 clone mth2-6m8, ... 54 0.030 1
(U53267) Carpomya shineri cytochrome oxidase subunit II (COI... 54 0.030 1
(EU435891) Sepsis nitens voucher su55 cytochrome oxidase sub... 54 0.030 1
(EU435874) Paratoxopoda amonane voucher su36 cytochrome oxid... 54 0.030 1
(EU435873) Parapalaeosepsis plebeia voucher su35 cytochrome ... 54 0.030 1
(EU435865) Dicranosepsis unipilosa voucher su24 cytochrome o... 54 0.030 1
(EU435863) Dicranosepsis olfactoria voucher su22 cytochrome ... 54 0.030 1
(EU435861) Dicranosepsis hamata voucher su20 cytochrome oxid... 54 0.030 1
(EU435858) Dicranosepsis crinita voucher su17 cytochrome oxi... 54 0.030 1
(EU435856) Dicranosepsis cf. parva RM-2008 voucher su15 cyto... 54 0.030 1
(DQ866052) Cydistomyia duplonotata mitochondrion, complete g... 54 0.030 1
(AY805315) Ceratitis curvata isolate 1382 cytochrome oxidase... 54 0.030 1
(AY573168) Platystoma seminationis cytochrome oxidase subuni... 54 0.030 1
(AJ841754) Zuskamira inexpectata mitochondrial partial COII ... 54 0.030 1
(AF276869) Phytomyza ditmani isolate Pdi2 cytochrome oxidase... 54 0.030 1
(AF276865) Phytomyza n. sp. 1 isolate Pss cytochrome oxidase... 54 0.030 1
(AF276864) Phytomyza n. sp. 1 isolate Pcma cytochrome oxidas... 54 0.030 1
(AF276863) Phytomyza n. sp. 1 isolate Pccb cytochrome oxidas... 54 0.030 1
(AF276857) Phytomyza n. sp. 5 isolate Phgp2 cytochrome oxida... 54 0.030 1
(AF276856) Phytomyza n. sp. 5 isolate Phgp cytochrome oxidas... 54 0.030 1
(AF276855) Phytomyza ditmani isolate Pdi3 cytochrome oxidase... 54 0.030 1
(AF276854) Phytomyza ditmani isolate Pdi cytochrome oxidase ... 54 0.030 1
(AF276853) Phytomyza n. sp. 2 isolate Pvt18 cytochrome oxida... 54 0.030 1
(AF276852) Phytomyza n. sp. 2 isolate Pvt15 cytochrome oxida... 54 0.030 1
(AF276851) Phytomyza nemopanthi cytochrome oxidase subunit I... 54 0.030 1
(AF276843) Phytomyza vomitoriae isolate Pvo2 cytochrome oxid... 54 0.030 1
(AF276842) Phytomyza vomitoriae isolate Pvo cytochrome oxida... 54 0.030 1
(AF276841) Phytomyza vomitoriae isolate Pvo3 cytochrome oxid... 54 0.030 1
(CR300824) mte1-19I6RM1 BAC end, cultivar Jemalong A17 of Me... 54 0.030 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.031 16
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 0.031 21
(DD209246) test. 36 0.033 7
(AX826083) Sequence 335 from Patent WO03072821. 36 0.033 7
(AX822443) Sequence 335 from Patent EP1340818. 36 0.033 7
(AX795921) Sequence 264 from Patent WO03052135. 36 0.033 7
(BX470229) Zebrafish DNA sequence from clone DKEY-193B15 in ... 42 0.035 12
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 36 0.037 10
(AC210513) Populus trichocarpa clone POP094-C01, complete se... 32 0.038 14
(CU694942) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.040 14
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.040 23
(AU087362) Plasmodium falciparum 3D7 cDNA clone from Sugano ... 50 0.041 2
(AC154775) Mus musculus BAC clone RP23-100F7 from chromosome... 34 0.042 10
(AC151817) Medicago truncatula clone mth2-10f23, WORKING DRA... 34 0.043 9
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.044 24
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome. 36 0.045 20
(AM285309) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 0.046 9
(CP000001) Bacillus cereus E33L, complete genome. 38 0.046 22
(FB571305) Sequence 172 from Patent EP1865317. 34 0.047 14
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 36 0.048 23
(AB267275) Rhagophthalmus ohbai mitochondrial DNA, complete ... 34 0.048 9
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,... 36 0.048 18
(AB174194) Macaca fascicularis brain cDNA clone: QtrA-15338,... 48 0.049 2
(BD460228) Diagnosis of Diseases Associated with Cell Cycle. 32 0.052 9
(BD452150) Diagnosis of Diseases Associated with Cell Cycle. 32 0.052 9
(AX348575) Sequence 33 from Patent WO0202807. 32 0.052 9
(AX345162) Sequence 233 from Patent WO0200928. 32 0.052 9
(AX344178) Sequence 25 from Patent WO0200926. 32 0.052 9
(AX251764) Sequence 25 from Patent WO0168911. 32 0.052 9
(CG803819) 1118046B06.2EL_x1 1118 - RescueMu Grid S Zea mays... 44 0.052 2
(BX072539) Zebrafish DNA sequence from clone CH211-286O24 in... 40 0.054 11
(AM472953) Vitis vinifera contig VV78X202022.22, whole genom... 36 0.055 6
(AX458482) Sequence 28 from Patent WO0246454. 40 0.055 8
(AL445588) Human DNA sequence from clone RP11-522H16 on chro... 34 0.058 12
(AF276849) Phytomyza verticillatae isolate Pvt10 cytochrome ... 52 0.058 3
(CU571251) Zebrafish DNA sequence from clone CH73-178H11 in ... 44 0.058 9
(AE015927) Clostridium tetani E88, complete genome. 36 0.059 25
(CU571255) Zebrafish DNA sequence from clone CH73-344J23. 46 0.060 9
(EL501513) 078_PFLAB1-M-P16B.AB1 Blood stage Plasmodium falc... 50 0.060 2
(AL035475) Plasmodium falciparum MAL4P2. 42 0.061 14
(CP000049) Borrelia turicatae 91E135, complete genome. 34 0.063 23
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 34 0.065 17
(CR940352) Theileria annulata genomic DNA chromosome 3. 36 0.065 20
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 38 0.067 22
(AY486113) Anopheles varuna cytochrome oxidase subunit II (C... 50 0.067 2
(AL844507) Plasmodium falciparum chromosome 8. 40 0.069 18
(BX950199) Zebrafish DNA sequence from clone CH211-215A11 in... 38 0.070 14
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 36 0.070 18
(AE000783) Borrelia burgdorferi B31, complete genome. 38 0.071 20
(AC020740) Homo sapiens BAC clone RP11-795O2 from 4, complet... 40 0.072 13
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 46 0.072 20
(AF194479) Anopheles varuna strain No. 146 cytochrome c oxid... 50 0.073 2
(AF194478) Anopheles varuna strain No. 141 cytochrome c oxid... 50 0.073 2
(U94300) Anopheles flavirostris cytochrome c oxidase subunit... 50 0.073 2
(BD452598) Diagnosis of Diseases Associated with tumor suppr... 44 0.073 5
(AX251077) Sequence 45 from Patent WO0168912. 44 0.073 5
(AJ512748) Anopheles varuna mitochondrial partial COII gene ... 50 0.073 2
(AJ512742) Anopheles flavirostris mitochondrial partial COII... 50 0.073 2
(AC101883) Mus musculus chromosome 1, clone RP23-402F17, com... 38 0.075 11
(FB571359) Sequence 226 from Patent EP1865317. 34 0.077 18
(AE001272) Lactococcus lactis DPC3147 plasmid pMRC01, comple... 34 0.079 8
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 0.081 14
(X04465) Marchantia polymorpha chloroplast genome DNA. 34 0.081 16
(AF069112) Schizaphis graminum large subunit ribosomal RNA g... 38 0.082 5
(DJ386646) Diagnosis of Diseases Associated with Metastasis. 34 0.083 7
(AX346109) Sequence 1180 from Patent WO0200928. 34 0.083 7
(AX281442) Sequence 106 from Patent WO0177376. 34 0.083 7
(AC140103) Medicago truncatula chromosome 8 clone mth2-9i16,... 36 0.084 10
(AY863212) Rhizopus oryzae mitochondrion, complete genome. 30 0.084 11
(AX392736) Sequence 26 from Patent WO0212526. 38 0.085 9
(AR707083) Sequence 26 from patent US 6933145. 38 0.085 9
(CR759823) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 0.086 14
(AC220075) Heliconius erato clone BBAM-33L14, WORKING DRAFT ... 34 0.087 11
(AC201435) Strongylocentrotus purpuratus clone R3-3007D6, WO... 32 0.087 12
(AJ311538) Chironomus calligraphus mitochondrial partial COI... 46 0.088 3
(AJ311536) Chironomus calligraphus mitochondrial partial COI... 46 0.088 3
(AJ311532) Chironomus calligraphus mitochondrial partial COI... 46 0.088 3
(AJ311530) Chironomus calligraphus mitochondrial partial COI... 46 0.088 3
(AJ310771) Chironomus calligraphus mitochondrial partial cox... 46 0.088 3
(AJ310770) Chironomus calligraphus mitochondrial partial cox... 46 0.088 3
(AC181116) Strongylocentrotus purpuratus clone R3-3043O21, W... 32 0.088 16
(CU929048) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.091 9
(AC225291) Monodelphis domestica clone VMRC18-426B6, WORKING... 36 0.093 11
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 32 0.093 21
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 0.094 10
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 0.095 22
(BX571857) Staphylococcus aureus strain MSSA476, complete ge... 40 0.096 23
(BX950229) Methanococcus maripaludis strain S2, complete seq... 40 0.100 17
(CS468836) Sequence 27 from Patent EP1748080. 32 0.10 11
(CS419313) Sequence 27 from Patent WO2006094836. 32 0.10 11
(CU012067) S.lycopersicum DNA sequence from clone LE_HBa-132... 38 0.11 10
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp... 40 0.11 23
(AX344565) Sequence 16 from Patent WO0200932. 36 0.11 16
(CU469496) Zebrafish DNA sequence from clone CH73-113C9 in l... 38 0.11 10
(CR925878) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.11 18
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 36 0.11 12
(CU179920) Medicago truncatula chromosome 5 clone mth4-25c2,... 36 0.11 13
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 34 0.11 9
(FB571304) Sequence 171 from Patent EP1865317. 36 0.11 22
(FB571360) Sequence 227 from Patent EP1865317. 32 0.11 22
(AE002132) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 36 0.11 8
(CU459184) Zebrafish DNA sequence from clone CH73-104C12 in ... 46 0.11 10
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 32 0.12 21
(AC098092) Rattus norvegicus clone CH230-11K1, *** SEQUENCIN... 36 0.12 12
(CS468878) Sequence 69 from Patent EP1748080. 34 0.12 18
(CS419355) Sequence 69 from Patent WO2006094836. 34 0.12 18
(BX511162) Zebrafish DNA sequence from clone DKEY-240B22 in ... 46 0.12 10
(AL928597) Mouse DNA sequence from clone RP23-373N5 on chrom... 52 0.12 1
(EU435862) Dicranosepsis javanica voucher su21 cytochrome ox... 52 0.12 1
(BH188076) 035_E_04-rev SmBAC1 Schistosoma mansoni genomic c... 52 0.12 1
(AL625019) T3 end of clone 035BC02 of library SmBAC1 from st... 52 0.12 1
(CE739521) tigr-gss-dog-17000315730975 Dog Library Canis lup... 52 0.12 1
(DT587939) she01-26ms2-b07 She01 Saruma henryi cDNA clone sh... 52 0.12 1
(CN448467) GUO_cDNA_13_39 Flower bud cDNA library from Lycor... 52 0.12 1
(CN448466) GUO_cDNA_22_60 Flower bud cDNA library from Lycor... 52 0.12 1
(FE095682) LV_GL_RA50E10f Litopenaeus vannamei gills cDNA li... 52 0.12 1
(AC213496) Populus trichocarpa clone POP080-H20, complete se... 36 0.12 12
(AF474339) Dictyostelium discoideum ABC transporter ABCC.7 (... 36 0.12 5
(EJ945293) 1093018910537 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.13 3
(AL133370) Human chromosome 14 DNA sequence BAC C-2566J3 of ... 40 0.13 9
(CP000881) Hemiselmis andersenii chromosome 1, complete sequ... 32 0.13 18
(AX348899) Sequence 357 from Patent WO0202807. 34 0.13 8
(AX344490) Sequence 337 from Patent WO0200926. 34 0.13 8
(AB035871) Pseudoregma koshunensis mitochondrial genes for s... 34 0.13 4
(AM424031) Vitis vinifera contig VV78X134336.3, whole genome... 40 0.13 6
(CU407225) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.14 11
(EJ138903) 1092343631774 Global-Ocean-Sampling_GS-27-01-01-1... 32 0.14 5
(AL035477) Plasmodium falciparum MAL4P4. 36 0.14 20
(AC189633) Brassica rapa subsp. pekinensis clone KBrS004A14,... 38 0.14 9
(BX649398) Zebrafish DNA sequence from clone DKEY-202B22 in ... 38 0.14 14
(AC189670) Trichinella spiralis BAC clone TS195-11H12 from c... 36 0.14 13
(AC106361) Rattus norvegicus clone CH230-120G23, *** SEQUENC... 36 0.14 12
(CT868689) Pig DNA sequence from clone CH242-518H14 on chrom... 36 0.14 14
(BX510301) Zebrafish DNA sequence from clone CH211-215A10 in... 32 0.15 18
(AC152126) Dasypus novemcinctus clone VMRC5-122P15, WORKING ... 40 0.15 12
(BJ421851) Dictyostelium discoideum cDNA clone:ddv44e03, 5' ... 36 0.15 4
(CU311187) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.15 12
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 0.15 20
(FP086608) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.16 9
(BX842696) Zebrafish DNA sequence from clone DKEY-165P1 in l... 36 0.16 13
(CS468877) Sequence 68 from Patent EP1748080. 34 0.16 21
(CS419354) Sequence 68 from Patent WO2006094836. 34 0.16 21
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 38 0.17 19
(AC214468) Populus trichocarpa clone POP038-L21, complete se... 38 0.17 13
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 32 0.17 23
(AX344572) Sequence 23 from Patent WO0200932. 38 0.17 18
(AP006201) Homo sapiens genomic DNA, chromosome 6, clone:RP1... 40 0.17 13
(AC178079) Strongylocentrotus purpuratus clone R3-3059O13, W... 42 0.18 10
(AL110479) Caenorhabditis elegans YAC Y105C5B. 34 0.18 19
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 32 0.18 18
(EJ545040) 1092956078049 Global-Ocean-Sampling_GS-29-01-01-1... 40 0.19 3
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 0.19 12
(FB571382) Sequence 249 from Patent EP1865317. 34 0.19 19
(AX344564) Sequence 15 from Patent WO0200932. 32 0.19 21
(AX344567) Sequence 18 from Patent WO0200932. 36 0.19 19
(AL355052) Human chromosome 14 DNA sequence BAC R-1070A8 of ... 36 0.20 12
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 34 0.20 22
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 42 0.20 18
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 36 0.20 13
(AF402141) Schizophyllum commune mitochondrial DNA, complete... 30 0.21 12
(CR936948) Medicago truncatula chromosome 5 clone mth2-29e9,... 34 0.21 13
(AB284555) Polistes japonicus gene for 16S rRNA, partial seq... 30 0.21 6
(AB284547) Polistes japonicus gene for 16S rRNA, partial seq... 30 0.21 6
(AC157026) Bos taurus clone CH240-45H10, WORKING DRAFT SEQUE... 44 0.22 11
(AC107015) Homo sapiens 3 BAC RP11-124D9 (Roswell Park Cance... 36 0.22 14
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 34 0.22 14
(AY261453) Procladius villosimanus isolate J4 cytochrome oxi... 46 0.22 2
(BX537102) Zebrafish DNA sequence from clone DKEY-276L17 in ... 30 0.23 19
(AC105806) Rattus norvegicus clone CH230-70H7, *** SEQUENCIN... 34 0.23 15
(AF291051) Carsonella ruddii cell division protein (gidA) ge... 30 0.24 9
(EF203088) Gryllus bimaculatus nudivirus, complete genome. 34 0.25 12
(U87145) Toxoplasma gondii chloroplast, complete genome. 40 0.25 9
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D... 38 0.25 26
(AC026971) Homo sapiens chromosome 18 clone RP11-591I15 map ... 40 0.25 11
(AC120200) Danio rerio strain Tue clone CH211-247D19, WORKIN... 46 0.25 8
(AP006200) Homo sapiens genomic DNA, chromosome 6, clone:RP1... 40 0.26 14
(AX345200) Sequence 271 from Patent WO0200928. 34 0.26 7
(CR457445) Zebrafish DNA sequence from clone CH211-204C5 in ... 36 0.27 2
(AC217602) Pteropus vampyrus clone CH279-172B10, WORKING DRA... 36 0.27 2
(FP085560) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.27 8
(BZ017811) oeh86c08.b1 B.oleracea002 Brassica oleracea genom... 32 0.28 5
(AP009545) Solanum lycopersicum DNA, chromosome 8, clone: C0... 36 0.28 14
(AC096708) Homo sapiens chromosome 18, clone RP11-861L17, co... 34 0.29 15
(AC218054) Peromyscus maniculatus rufinus clone CH233-1M7, W... 38 0.29 9
(AC137833) Homo sapiens 3 BAC RP13-961N1 (Roswell Park Cance... 34 0.30 8
(AC145879) Pan troglodytes BAC clone RP43-20K4 from chromoso... 34 0.30 11
(AC188496) Aotus nancymaae clone CH258-46K3, WORKING DRAFT S... 34 0.30 11
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 32 0.31 11
(AC213176) Equus caballus clone CH241-516D3, WORKING DRAFT S... 42 0.31 10
(EA102645) Sequence 28 from patent US 7195870. 32 0.31 9
(BD428884) Method and nucleic acids for pharmacogenomic meth... 32 0.31 9
(AX348363) Sequence 58 from Patent WO0202806. 32 0.31 9
(AX323550) Sequence 38 from Patent WO0192565. 32 0.31 9
(AX277865) Sequence 28 from Patent WO0177375. 32 0.31 9
(AC171159) Atelerix albiventris clone LB4-361K23, WORKING DR... 36 0.31 9
(AM480514) Vitis vinifera contig VV78X206231.12, whole genom... 42 0.31 4
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 0.32 20
(AF465309) Dictyostelium discoideum ABC transporter ABCA.7 (... 38 0.32 5
(EF506945) Leptosira terrestris UTEX 333 chloroplast, comple... 34 0.32 19
(AY583797) Orthocladius ashei voucher EW136 cytochrome c oxi... 44 0.32 3
(BD452780) Diagnosis of Diseases Associated with tumor suppr... 38 0.33 6
(AX251259) Sequence 227 from Patent WO0168912. 38 0.33 6
(DY229387) ID0AAK6YO04CM1 ApHL3SD Acyrthosiphon pisum cDNA c... 40 0.33 3
(AC187645) Glycine max clone gmp1-49d18, complete sequence. 40 0.33 11
(AF421306) Anopheles minimus A clone A-1C11 cytochrome c oxi... 42 0.34 3
(AF421303) Anopheles minimus A clone A-1B4 cytochrome c oxid... 42 0.34 3
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g... 46 0.34 25
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862... 38 0.34 5
(AL732577) Zebrafish DNA sequence from clone RP71-1M10 in li... 38 0.34 9
(FJ423446) Chlamydomonas reinhardtii strain CC-503 cw92 mt+ ... 40 0.34 14
(AL356861) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 0.35 14
(CL935046) OA_ABa0045B15.f OA_ABa Oryza australiensis genomi... 40 0.35 2
(AL929586) Zebrafish DNA sequence from clone CH211-188I17. 40 0.35 11
(CT025922) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.35 13
(EK365347) 1095469394998 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.36 2
(DQ102703) Coreana raphaelis mitochondrion, complete genome. 32 0.36 9
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 30 0.36 23
(AC114258) Dictyostelium discoideum chromosome 2 map complem... 40 0.36 10
(AC165871) Bos taurus clone CH240-176H6, WORKING DRAFT SEQUE... 38 0.36 11
(EF517794) Solanum bulbocastanum BAC 27I18, complete sequence. 34 0.37 11
(AY217738) Eimeria tenella apicoplast, complete genome. 38 0.37 7
(AC156059) Bos taurus clone CH240-47G13, WORKING DRAFT SEQUE... 40 0.37 13
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple... 36 0.37 21
(EA102739) Sequence 122 from patent US 7195870. 36 0.37 5
(AX323654) Sequence 142 from Patent WO0192565. 36 0.37 5
(AX277959) Sequence 122 from Patent WO0177375. 36 0.37 5
(AF466304) Dictyostelium discoideum ABC transporter AbcB1 (a... 32 0.38 6
(AP008983) Clostridium phage c-st genomic DNA, complete genome. 32 0.39 14
(CT025749) Zebrafish DNA sequence from clone DKEY-249P9 in l... 38 0.40 9
(BX927297) Zebrafish DNA sequence from clone DKEY-238M4 in l... 36 0.40 9
(AL590380) Mouse DNA sequence from clone RP23-146D23 on chro... 34 0.40 12
(CU463997) Wallaby DNA sequence from clone MEKBa-66I4. 38 0.40 11
(AX458544) Sequence 90 from Patent WO0246454. 36 0.40 10
(CU929541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.40 14
(AC212701) Pongo abelii chromosome UNKNOWN clone CH276-52O10... 44 0.40 11
(CU459128) Zebrafish DNA sequence from clone CH211-171C15 in... 38 0.41 15
(AB035878) Ceratovacuna longifila mitochondrial genes for sm... 34 0.41 3
(AY232271) Dictyostelium discoideum putative protein Roco9 (... 38 0.42 5
(AC208941) Populus trichocarpa clone JGIACSB1085-L15, comple... 44 0.43 6
(CT956011) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.43 13
(CR749750) Zebrafish DNA sequence from clone DKEY-222F1 in l... 44 0.43 9
(J03986) P.falciparum 10b antigen gene, partial cds. 46 0.44 2
(AC226038) Musa acuminata clone BAC MA4-3F3, complete sequence. 46 0.44 8
(AX344563) Sequence 14 from Patent WO0200932. 34 0.44 18
(AL359194) Human DNA sequence from clone RP11-326D19 on chro... 38 0.44 11
(AC104932) Mus musculus chromosome 3, clone RP24-337A16, com... 36 0.45 11
(EJ122468) 1092343379263 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.45 4
(CN757977) ID0AAA20DH12RM1 ApMS Acyrthosiphon pisum cDNA clo... 40 0.45 3
(AP001341) Homo sapiens genomic DNA, chromosome 21q21.1-q21.... 34 0.46 14
(AL034557) Plasmodium falciparum MAL4P1. 38 0.46 20
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 38 0.46 18
(EJ396323) 1093012001430 Global-Ocean-Sampling_GS-28-01-01-1... 38 0.47 3
(DQ073916) Adoxophyes honmai mitochondrion, complete genome. 46 0.47 5
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 34 0.47 22
(AC091309) Mus musculus chromosome 17, clone RP23-127L4, com... 50 0.47 1

>(BJ436948) Dictyostelium discoideum cDNA clone:ddv32a20, 3' end,
single read.
Length = 757

Score = 1318 bits (665), Expect(2) = 0.0
Identities = 665/665 (100%)
Strand = Plus / Minus


Query: 1927 cgaaatcaattaaaaacaaaacaattggaaagaattttaaaaacattagattacactaat 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cgaaatcaattaaaaacaaaacaattggaaagaattttaaaaacattagattacactaat 635


Query: 1987 aaatttattgatggtttcaaatcagttacttcaaatcaatcaataacaataaatgaaaaa 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aaatttattgatggtttcaaatcagttacttcaaatcaatcaataacaataaatgaaaaa 575


Query: 2047 ttaaaattggtttcaaatttatcaatggcctatcaaacggaattaaattttgtttgttta 2106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttaaaattggtttcaaatttatcaatggcctatcaaacggaattaaattttgtttgttta 515


Query: 2107 ccaggtttacttcatggacaaactattgaattaattaatcaattattaaaagtccgtcca 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ccaggtttacttcatggacaaactattgaattaattaatcaattattaaaagtccgtcca 455


Query: 2167 aataataaacatttaatagtttgttttattggcttacatttattaaaaccaacaaaatat 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aataataaacatttaatagtttgttttattggcttacatttattaaaaccaacaaaatat 395


Query: 2227 aaaaaatgtttggaattaatcaactctttaaagaatgaatgtaaaattattactgaatta 2286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaaaaatgtttggaattaatcaactctttaaagaatgaatgtaaaattattactgaatta 335


Query: 2287 gaggacaacattgatttaagtaaactagatttaaattcaacctcaaattcaaccttgaca 2346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaggacaacattgatttaagtaaactagatttaaattcaacctcaaattcaaccttgaca 275


Query: 2347 tatgatttaaattttttaaaaagtatgattcatttattgatgggtgattttaaattaggt 2406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatgatttaaattttttaaaaagtatgattcatttattgatgggtgattttaaattaggt 215


Query: 2407 ttagaaacattagatttatgtattgaagatagtggtgctggtgctggtgttggtgtagtt 2466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttagaaacattagatttatgtattgaagatagtggtgctggtgctggtgttggtgtagtt 155


Query: 2467 aatgaatatttctatttctataaagcatttgcattggattgtttaaatcatttagaaaca 2526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aatgaatatttctatttctataaagcatttgcattggattgtttaaatcatttagaaaca 95


Query: 2527 aatattgaaacaaaatattcatcagaatcattttatttaaaatatttaagtaatgctcca 2586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 aatattgaaacaaaatattcatcagaatcattttatttaaaatatttaagtaatgctcca 35


Query: 2587 ctaga 2591
|||||
Sbjct: 34 ctaga 30

Score = 46.1 bits (23), Expect(2) = 0.0
Identities = 23/23 (100%)
Strand = Plus / Minus


Query: 2593 ggattcagagtaccagatgcact 2615
|||||||||||||||||||||||
Sbjct: 29 ggattcagagtaccagatgcact 7

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 4,250,530,752
Number of extensions: 303679638
Number of successful extensions: 30609480
Number of sequences better than 10.0: 2709
Length of query: 2886
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2861
Effective length of database: 96,311,147,814
Effective search space: 275546193895854
Effective search space used: 275546193895854
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.17
Homology vs Protein
Query= Contig-U15814-1 (Contig-U15814-1Q) /CSM_Contig/Contig-U15814-1Q.Seq.d
(2886 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BA000040_4172(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 50 6e-04
CP000361_540(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 49 8e-04
CP001102_507(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 47 0.004
CP001217_1056(CP001217|pid:none) Helicobacter pylori P12, comple... 45 0.012
AE008692_68(AE008692|pid:none) Zymomonas mobilis subsp. mobilis ... 45 0.015
AM260522_1248(AM260522|pid:none) Helicobacter acinonychis str. S... 45 0.015
CP000606_2696(CP000606|pid:none) Shewanella loihica PV-4, comple... 45 0.020
CP000792_1995(CP000792|pid:none) Campylobacter concisus 13826, c... 44 0.034
CP001072_1065(CP001072|pid:none) Helicobacter pylori Shi470, com... 44 0.034
EF372796_1(EF372796|pid:none) Helicobacter pylori strain K42 Hcp... 43 0.058
CP000390_25(CP000390|pid:none) Mesorhizobium sp. BNC1, complete ... 43 0.058
CP001217_234(CP001217|pid:none) Helicobacter pylori P12, complet... 43 0.058
(Q9ZMJ9) RecName: Full=Putative beta-lactamase hcpE; EC... 43 0.058
CP000361_1068(CP000361|pid:none) Arcobacter butzleri RM4018, com... 43 0.075
CP001102_1160(CP001102|pid:none) Candidatus Amoebophilus asiatic... 43 0.075
AE008692_1969(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 42 0.098
EF372788_1(EF372788|pid:none) Helicobacter pylori strain JS10 Hc... 42 0.13
AX590105_1(AX590105|pid:none) Sequence 1 from Patent WO02083723.... 42 0.17
EF372762_1(EF372762|pid:none) Helicobacter pylori strain K17 Hcp... 42 0.17
CP000395_643(CP000395|pid:none) Borrelia afzelii PKo, complete g... 41 0.22
AE008692_135(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 41 0.22
EF372785_1(EF372785|pid:none) Helicobacter pylori strain JS3 Hcp... 41 0.22
(O25021) RecName: Full=Putative beta-lactamase hcpE; EC... 41 0.22
FN357878_10(FN357878|pid:none) Schistosoma mansoni genome sequen... 41 0.22
AM260522_406(AM260522|pid:none) Helicobacter acinonychis str. Sh... 41 0.22
EF372806_1(EF372806|pid:none) Helicobacter pylori strain S47 Hcp... 41 0.29
CP001173_206(CP001173|pid:none) Helicobacter pylori G27, complet... 41 0.29
CP000471_1513(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 41 0.29
EF372807_1(EF372807|pid:none) Helicobacter pylori strain S57 Hcp... 41 0.29
CP001205_601(CP001205|pid:none) Borrelia burgdorferi ZS7, comple... 41 0.29
EF372787_1(EF372787|pid:none) Helicobacter pylori strain JS8 Hcp... 41 0.29
EF372791_1(EF372791|pid:none) Helicobacter pylori strain K8 HcpE... 41 0.29
CP001102_833(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 41 0.29
EF372803_1(EF372803|pid:none) Helicobacter pylori strain S24 Hcp... 41 0.29
A70179(A70179) exodeoxyribonuclease V, gamma chain (recC) homolo... 41 0.29
EF372797_1(EF372797|pid:none) Helicobacter pylori strain K51 Hcp... 40 0.37
EF372793_1(EF372793|pid:none) Helicobacter pylori strain K24 Hcp... 40 0.37
AF008565_3(AF008565|pid:none) Helicobacter pylori GidA and DapE ... 40 0.37
CP000153_1921(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 40 0.37
EF372794_1(EF372794|pid:none) Helicobacter pylori strain K25 Hcp... 40 0.37
EF372804_1(EF372804|pid:none) Helicobacter pylori strain S45 Hcp... 40 0.37
EF372789_1(EF372789|pid:none) Helicobacter pylori strain JS11 Hc... 40 0.37
EF372783_1(EF372783|pid:none) Helicobacter pylori strain JF58 Hc... 40 0.49
EF372782_1(EF372782|pid:none) Helicobacter pylori strain JF55 Hc... 40 0.49
EF372777_1(EF372777|pid:none) Helicobacter pylori strain S57 Hcp... 40 0.49
CP000863_1119(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 40 0.64
EF372775_1(EF372775|pid:none) Helicobacter pylori strain S46 Hcp... 40 0.64
AY814235_1(AY814235|pid:none) Schistosoma japonicum SJCHGC01101 ... 40 0.64
EF372795_1(EF372795|pid:none) Helicobacter pylori strain K30 Hcp... 40 0.64
CP000247_1692(CP000247|pid:none) Escherichia coli 536, complete ... 39 0.83
CP000859_2711(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 39 0.83
AE014075_1226(AE014075|pid:none) Escherichia coli CFT073, comple... 39 0.83
AE008692_137(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 39 0.83
CP001333_213(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 39 0.83
CP001173_184(CP001173|pid:none) Helicobacter pylori G27, complet... 39 1.1
CP001322_4199(CP001322|pid:none) Desulfatibacillum alkenivorans ... 39 1.1
EF372869_1(EF372869|pid:none) Helicobacter pylori strain JF55 hy... 39 1.1
EF372874_1(EF372874|pid:none) Helicobacter pylori strain JS08 hy... 39 1.1
CP000863_1120(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 39 1.1
CP000241_213(CP000241|pid:none) Helicobacter pylori HPAG1, compl... 39 1.1
EF372760_1(EF372760|pid:none) Helicobacter pylori strain K8 HcpA... 39 1.1
CP001102_710(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 39 1.1
CP000013_625(CP000013|pid:none) Borrelia garinii PBi, complete g... 39 1.1
CP000439_1126(CP000439|pid:none) Francisella tularensis subsp. n... 39 1.4
CP000155_4031(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 39 1.4
CP001100_27(CP001100|pid:none) Chloroherpeton thalassium ATCC 35... 39 1.4
CP001019_795(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com... 39 1.4
EF372764_1(EF372764|pid:none) Helicobacter pylori strain K25 Hcp... 39 1.4
AM233362_783(AM233362|pid:none) Francisella tularensis subsp. ho... 39 1.4
CP000521_3673(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 39 1.4
CP000932_1336(CP000932|pid:none) Campylobacter lari RM2100, comp... 39 1.4
EF372779_1(EF372779|pid:none) Helicobacter pylori strain G94124 ... 39 1.4
EF613521_1(EF613521|pid:none) Solanum demissum isolate 169N4a di... 38 1.9
CP001020_883(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com... 38 1.9
BX908798_713(BX908798|pid:none) Parachlamydia-related symbiont U... 38 1.9
EF372868_1(EF372868|pid:none) Helicobacter pylori strain JF28 hy... 38 1.9
EF372750_1(EF372750|pid:none) Helicobacter pylori strain JF28 Hc... 38 1.9
AE016828_977(AE016828|pid:none) Coxiella burnetii RSA 493, compl... 38 1.9
EF372768_1(EF372768|pid:none) Helicobacter pylori strain K65 Hcp... 38 1.9
EF372763_1(EF372763|pid:none) Helicobacter pylori strain K24 Hcp... 38 1.9
Z54141_1(Z54141|pid:none) S.cerevisiae chromosome XIII cosmid 99... 38 2.4
A46417(A46417;S53979;S59302)NIP1 protein - yeast (Saccharomyces ... 38 2.4
EF372752_1(EF372752|pid:none) Helicobacter pylori strain JF58 Hc... 38 2.4
CR940348_255(CR940348|pid:none) Theileria annulata strain Ankara... 37 3.2
EF372733_1(EF372733|pid:none) Helicobacter pylori strain JS7 Hcp... 37 3.2
CP000157_212(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 37 3.2
EF372749_1(EF372749|pid:none) Helicobacter pylori strain G9419 H... 37 3.2
CP000108_1907(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 37 3.2
CP000449_2580(CP000449|pid:none) Maricaulis maris MCS10, complet... 37 3.2
EF372767_1(EF372767|pid:none) Helicobacter pylori strain K51 Hcp... 37 3.2
CP000776_693(CP000776|pid:none) Campylobacter hominis ATCC BAA-3... 37 3.2
AM260522_313(AM260522|pid:none) Helicobacter acinonychis str. Sh... 37 3.2
CP000675_1302(CP000675|pid:none) Legionella pneumophila str. Cor... 37 4.1
EF372747_1(EF372747|pid:none) Helicobacter pylori strain G4842 H... 37 4.1
EF372800_1(EF372800|pid:none) Helicobacter pylori strain R10 Hcp... 37 4.1
BC079980_1(BC079980|pid:none) Xenopus laevis MGC80931 protein, m... 37 4.1
CP000471_1930(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 37 4.1
EF372870_1(EF372870|pid:none) Helicobacter pylori strain JF58 hy... 37 4.1
CP000496_777(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 37 4.1
EF372746_1(EF372746|pid:none) Helicobacter pylori strain G4655 H... 37 5.4
BC075517_1(BC075517|pid:none) Xenopus tropicalis DnaJ (Hsp40) ho... 37 5.4
CR628337_1189(CR628337|pid:none) Legionella pneumophila str. Len... 37 5.4
CP000792_716(CP000792|pid:none) Campylobacter concisus 13826, co... 37 5.4
EF372802_1(EF372802|pid:none) Helicobacter pylori strain R50 Hcp... 37 5.4
BX908798_1661(BX908798|pid:none) Parachlamydia-related symbiont ... 37 5.4
CP001279_984(CP001279|pid:none) Nautilia profundicola AmH, compl... 37 5.4
EF372799_1(EF372799|pid:none) Helicobacter pylori strain R7 HcpE... 37 5.4
EF372728_1(EF372728|pid:none) Helicobacter pylori strain JF28 Hc... 37 5.4
AP008230_4538(AP008230|pid:none) Desulfitobacterium hafniense Y5... 37 5.4
CP000282_2895(CP000282|pid:none) Saccharophagus degradans 2-40, ... 37 5.4
CP000510_1074(CP000510|pid:none) Psychromonas ingrahamii 37, com... 37 5.4
EF372886_1(EF372886|pid:none) Helicobacter pylori strain R07 hyp... 37 5.4
EF372759_1(EF372759|pid:none) Helicobacter pylori strain JS12 Hc... 36 7.0
AL590447_51(AL590447|pid:none) chromosome VII of strain GB-M1 of... 36 7.0
AM260522_544(AM260522|pid:none) Helicobacter acinonychis str. Sh... 36 7.0
(O82422) RecName: Full=Probable UDP-N-acetylglucosamine--peptide... 36 7.0
CP001322_2196(CP001322|pid:none) Desulfatibacillum alkenivorans ... 36 7.0
AE015928_3400(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 36 7.0
AF083031_146(AF083031|pid:none) Guillardia theta nucleomorph chr... 36 7.0
CP000792_1236(CP000792|pid:none) Campylobacter concisus 13826, c... 36 7.0
(Q6YZI0) RecName: Full=Probable UDP-N-acetylglucosamine--peptide... 36 7.0
AM270279_17(AM270279|pid:none) Aspergillus niger contig An12c023... 36 9.2
EF372776_1(EF372776|pid:none) Helicobacter pylori strain S47 Hcp... 36 9.2
BC140528_1(BC140528|pid:none) Bos taurus tetratricopeptide repea... 36 9.2
CP000510_1439(CP000510|pid:none) Psychromonas ingrahamii 37, com... 36 9.2
(Q5EA11) RecName: Full=Tetratricopeptide repeat protein 4; ... 36 9.2
CP000411_1361(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 36 9.2
AM920437_2297(AM920437|pid:none) Penicillium chrysogenum Wiscons... 36 9.2
BT020758_1(BT020758|pid:none) Bos taurus tetratricopeptide repea... 36 9.2
BC083794_1(BC083794|pid:none) Rattus norvegicus tetratricopeptid... 36 9.2
CP000082_360(CP000082|pid:none) Psychrobacter arcticus 273-4, co... 36 9.2
CP000749_3332(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 36 9.2
AF369027_1(AF369027|pid:none) Lumpy skin disease virus LSDV tran... 36 9.2
EF372744_1(EF372744|pid:none) Helicobacter pylori strain K42 Hcp... 36 9.2
AM910996_670(AM910996|pid:none) Plasmodium knowlesi strain H chr... 36 9.2

>BA000040_4172(BA000040|pid:none) Bradyrhizobium japonicum USDA 110
DNA, complete genome.
Length = 276

Score = 49.7 bits (117), Expect = 6e-04
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Frame = +1

Query: 1222 ASKSFSGSLFQMGHIFQSSLGNAVPKDEKLALSLFYQSALQNDKFQVPNLQNI------- 1380
A K S ++ ++G ++ + G+ V KDE A LF ++A + V NL +
Sbjct: 100 ADKGSSAAMVELGVLYGT--GSGVAKDEAQARKLFEKAAQAGNPRGVSNLAALGGAGGAA 157

Query: 1381 -KDPIKVTYYQKNMMVP--ESAYHVGIMFQRGIYGVQIDFEKTLFFYKIAADFNHLNACN 1551
DP + E+ Y +G+M G G + D F K AA NH A
Sbjct: 158 PADPAQARALLGKAAETNAEAQYQLGLMLSEGTGGAKDDVAARALFEKAAAQ-NHPGALE 216

Query: 1552 NYGSLLYQGILGPGKTNKDLGLEYIKKGADLGDEN 1656
G+ +G GP +KD Y ++ A LGDE+
Sbjct: 217 RMGAFAQEGRGGP--KDKDAAKAYYERAAALGDED 249

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,477,501,718
Number of extensions: 61200773
Number of successful extensions: 176885
Number of sequences better than 10.0: 135
Number of HSP's gapped: 176713
Number of HSP's successfully gapped: 151
Length of query: 962
Length of database: 1,051,180,864
Length adjustment: 138
Effective length of query: 824
Effective length of database: 604,535,722
Effective search space: 498137434928
Effective search space used: 498137434928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.02 gvh: 0.36 alm: 0.40 top: 0.57 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.11 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for Contig-U15814-1 is nuc

VS (DIR, S) 12
VH (FL, L) 5
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0