Contig-U15762-1
Contig ID Contig-U15762-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15762-1 (Contig-U15762-1Q) /CSM_Contig/Contig-U15762-1Q.Seq.d
AATTCAATCCAACATAAATGTAATAATAGTTTCATTTTTAGTCAGGATAC
CACTGCATTTAAAAAATAATATTGAAATAAAAATAAAAATAAAAATAAAA
AAAATAAAAGATCTATCCATGTTTGGCTATAATTATATATTTATATAATA
TAAAAATAAATAAAAAATAAAAATAAATAAATAATAATAATAACTATAAT
AACAGTAATAATAAAATGTATAATTTTTTTGATAGAATCAAAGCGCCTCT
ATCGGAATATAAAAGGTATGCAGCGAATCATAAGAAAGATGATGATTTTA
CAGATATTGAGGATAAAATAAATTGTGGACAATTTCCGAATGAATATGGT
AGTAATGCAATCGAGTTACCAAATTCACCTACATATAATAATAATAATAA
TAATAATAATGGTTCACCAAACGTTTTAAAACAATCTCAATATATAAGTT
TTATAAATCCATTATCATTACCATCATCATTGATACCACCACCACCAAAT
TATACATCACAACAAAATCTAAGTGATGTAATGAGTAATAATGGTGGTGG
TAGTGGTGTTGGTGTTAGTAGTAGTAATAATAATTTAAATTTAAGAAATA
CGACAGTATCAATGACATCACCTAGAAATGTACCAATAGTTACATCACCT
CGAAATATTACAATCTCACCTACTGCAAATATAATTTCTGTACCTGCTGA
AATTTCACAATGTAATAATGTACCGAATTCAATTGGTTCACCACCAATTG
AAGTTGAGCAATCACATTTAGTACCAAATAGCGAATTAAATAACAATAAC
AATAATAATAATAATAATAATGAAAATGTTGGTGAAGAAGATTTTCAATC
ATTAATGGATCAATCGAATAAATTACAAATTCAAATGCAAATGTTAATGC
AAAAAATGCAACAAATGCAACAATTGAAACAACAATTAAATTTAAAACAT
TCATCAGCCACTAATATATATGTACCACCAAGACAAGTTAGAGTGTCTGG
TCAAAAACCACCAATTAGACAAAGACAATTTCAAATGAGACCTCCACAAC
AATCTCAACAACAATTTTTCGATTTACCAATTCAAGAGCATGAACATGAT
ATACCCCATTCAAAAAGACAAGAATTTGAAGATTCATTAAGAAACACTAC
AACTGCAACAACAAATTTTAATGAAATTGAAATGCAAAATTTAAACCAAA
CTTCAAGCAGATTTGGTAATAGTAATACATTTTATAACCCAAATTTTGTG
AACCATAGTAGTGGCAGTTTAGATGAGTCAACCATAAATGTTGATTCACA
ATATCAACAACATGAAAAAGATAAAGATAATTCAAGTCAATTATCAAAAA
CTACAATGACCACATTACCAATAGTTTCTCC----------CTGGTATTT
TCTTTTCATTTGGTTCACCTCATTCAATTCTTTCACCATATACTCATTTC
CTTAGAATCAATTCCACCGATTACAATATGGAACGTATGGTTAGATTGGA
GAGATTGGCCGATAAGGTTATCTATGGTGAAGTTAGTTGTGTTGAAGCAT
TGGAGAAGTTAAGAAAGATTCTAGCAAAGAAGCCATTGTACAATATCTAT
CTCACAACTTTTAGTTATATAATGTCATCATTCACCATTGCCTTCTTTTT
CGATGTTGGCTGGGTCGAGGTTGGAGCTTGTTCAATCATTGGATTCTATG
TTGGCCTTTTATGTCTACTCTCGAGTAAAGTGTCTTTGGTTGGCAGAGTT
TTGGAGGCCTTGTCATCTTGTGGTGGAGCAATCATTGCATCGTTGTTCAA
TTGCTACATTTCGCCTATCCCCATATTTACAGTGACCCTGGGCGGCATCA
TATCGTTGTTGCCTGGTTTAGGCTTGACATTGGCCGTAGCGGAGATTTCA
ACTAGAAATCTGGTTAGTGGCACCTCAAGATTGGTTGGTGTTTTCTCTTG
TTTATTGCAATTAACTTTTGGTATTGCGTTGGGTACGAAATTCTCAGAGG
TAGTCATGCCAGTAAGAGACGAAGTTTTACCTGTAACTTTCCCTGATTGG
GTAATGTTTATTGTAATTCCGTTCGCTGCCATTACATTTGGTGTTCAATT
AAAAGTTCATTGGAGAGAATTTTGGGTTATCATCATCGCTAGTTACATTG
GTGTAACCGTTGGTAATTGGGGTAGTAAATATTTTGGTGATGTTGGTGCT
TTCTTTGGTTCAGCTGCAATTTGTGCTCTAGGTAACCTTTACTCAAGATT
AACAAATATTTCTGCGGTCGTTCCAATTATGGCGGGTATTATTTTACTGG
TTCCTGGTAGTATGGGTGTTAAAGGTATCGTTTCAATCAGTGATGGTGAT
ATTTCCGGAGGAATTGATTTCATTGGTGGTATGTTTATGACTGCTGCAAG
TTTAACAATGGGTTTATTGGTTGCAAATTTAATTATTGCTCCTCCAAAAT
CGTTCTAAAAAAAATAATAAAAAAAAAAAAATCTCTAACATTTTAAAATT
TATTCAATTATTTGTTTTAAATTTAATTTAATTATTGCTTCTCCAAAAAT
CATTCTTAAAAAAAAAAAAAATAATAATAATAAAAAAAGAATAAAAATAA
TTTTCTTATCTGCAAAACAA

Gap gap included
Contig length 2610
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3082546
End point 3085155
Strand (PLUS/MINUS) PLUS
Number of clones 22
Number of EST 32
Link to clone list U15762
List of clone(s)

est1=SHJ621F,-11,550
est2=VHB701F,1,674
est3=AHJ484F,10,554
est4=AHR483F,11,554
est5=SHL196F,11,552
est6=SHL662F,26,553
est7=SHA162F,34,553
est8=AHJ281F,36,555
est9=SHK748F,40,553
est10=AHG360F,44,594
est11=CHH435F,44,555
est12=SHH206F,51,549
est13=VHN679F,53,550
est14=AHD295F,55,553
est15=VHK516F,55,656
est16=AHH862F,136,536
est17=SHC521F,267,906
est18=CFC295F,806,1381
est19=SLB778F,1382,1809
est20=SHJ621Z,1731,2442
est21=SHK748Z,1761,2454
est22=VHN679Z,1766,2425
est23=SHH206Z,1830,2442
est24=SLB778Z,1831,2493
est25=VHK516Z,1845,2422
est26=SHL662Z,1938,2489
est27=SLA296Z,2020,2610
est28=SLC382Z,2047,2458
est29=SHL196Z,2129,2490
est30=AHG360Z,2131,2489
est31=SHC521Z,2131,2485
est32=SLF291E,2237,2498
Translated Amino Acid sequence
fnpt*m***fhf*sgyhci*kiilk*k*k*k*kk*kiypclaiiiylynikinkk*k*IN
NNNNYNNSNNKMYNFFDRIKAPLSEYKRYAANHKKDDDFTDIEDKINCGQFPNEYGSNAI
ELPNSPTYNNNNNNNNGSPNVLKQSQYISFINPLSLPSSLIPPPPNYTSQQNLSDVMSNN
GGGSGVGVSSSNNNLNLRNTTVSMTSPRNVPIVTSPRNITISPTANIISVPAEISQCNNV
PNSIGSPPIEVEQSHLVPNSELNNNNNNNNNNNENVGEEDFQSLMDQSNKLQIQMQMLMQ
KMQQMQQLKQQLNLKHSSATNIYVPPRQVRVSGQKPPIRQRQFQMRPPQQSQQQFFDLPI
QEHEHDIPHSKRQEFEDSLRNTTTATTNFNEIEMQNLNQTSSRFGNSNTFYNPNFVNHSS
GSLDESTINVDSQYQQHEKDKDNSSQLSKTTMTTLPIVS---

---GIFFSFGSPHSILSPYTHFLRINSTDYNMERMVRLERLADKVIYGEVSCVEALEKLR
KILAKKPLYNIYLTTFSYIMSSFTIAFFFDVGWVEVGACSIIGFYVGLLCLLSSKVSLVG
RVLEALSSCGGAIIASLFNCYISPIPIFTVTLGGIISLLPGLGLTLAVAEISTRNLVSGT
SRLVGVFSCLLQLTFGIALGTKFSEVVMPVRDEVLPVTFPDWVMFIVIPFAAITFGVQLK
VHWREFWVIIIASYIGVTVGNWGSKYFGDVGAFFGSAAICALGNLYSRLTNISAVVPIMA
GIILLVPGSMGVKGIVSISDGDISGGIDFIGGMFMTAASLTMGLLVANLIIAPPKSF*kk
**kkknl*hfkiysiicfkfnliiaspkiilkkkknnnnkkrikiiflsakq


Translated Amino Acid sequence (All Frames)
Frame A:
nsiqhkcnnsfifsqdttafkk*y*nknknknkknkrsihvwl*lyiyii*k*iknknk*
iiiitiitviikciiflieskrlyrnikgmqriirkmmilqilrik*ivdnfrmnmvvmq
ssyqihlhiiiiiiiimvhqtf*nnlni*vl*ihyhyhhh*yhhhqiihhnki*vm**vi
mvvvvvlvlvvviii*i*eirqyq*hhlemyq*lhhleilqshllqi*flyllkfhnvim
yriqlvhhqlklsnhi*yqian*ititiiiiiimkmlvkkifnh*winrinykfkckc*c
kkcnkcnn*nnn*i*nihqpliymyhqdkleclvknhqldkdnfk*dlhnnlnnnfsiyq
fksmnmiypiqkdknlkih*etlqlqqqilmklkcki*tklqadlvivihfitqil*tiv
vav*msqp*mlihninnmkkikiiqvnyqklq*phyq*fl---

---lvfsfhlvhliqffhhilislesippitiwnvwldwrdwpirlsmvklvvlkhwrs*
erf*qrshctisisqllvi*chhsplpsfsmlagsrlelvqsldsmlafyvysrvkclwl
aefwrpchlvveqslhrcsiatfrlspylq*pwaasyrcclv*a*hwp*rrfqleiwlva
pqdwlvfslvycn*llvlrwvrnsqr*scq*etkfyl*lslig*cll*frslplhlvfn*
kfigenfglssslvtlv*plvigvvnilvmlvlslvqlqfvl*vtftqd*qiflrsfqlw
rvlfywflvvwvlkvsfqsvmvifpeelislvvcl*llqv*qwvywlqi*llllqnrskk
nnkkkkisnilkfiqlfvlnli*llllqksflkkkkiiiikke*k*fsylqn

Frame B:
iqsninviivsflvriplhlknnieikikikikkikdlsmfgynyifi*yknk*kikink
****l**q***nv*ff**nqsasigi*kvcses*er**fyry*g*nklwtise*iw**cn
rvtkftyi********wftkrfktisiykfyksiiitiiidttttklyittksk*cne**
www*wcwc******fkfkkydsindit*kctnsyitskyynltyckynfctc*nftm**c
tefnwfttn*s*aitfstk*rik*q*q*******kcw*rrfsiingsie*itnsnanvna
knatnatiettikfktfish*yicttkts*svwskttn*tktisnetsttisttifrftn
sra*t*ytpfkktri*rfikkhyncnnkf**n*nakfkpnfkqiw***yil*pkfcep**
wqfr*vnhkc*ftistt*kr*r*fksiiknyndhitnsfs---

---wyflfiwftsfnsftiysfp*nqfhrlqygtyg*igeigr*gylw*s*lc*sigevk
kdsskeaivqylshnf*lynviihhcllfrcwlgrgwslfnhwilcwpfmstle*svfgw
qsfgglvilwwsnhcivvqllhfayphiysdpgrhhivvawfrldigrsgdfn*ksg*wh
lkigwcfllfiainfwycvgyeilrgshaskrrsftcnfp*lgnvycnsvrchyiwcsik
sslerilgyhhr*lhwcnrw*lg**ifw*cwcflwfscnlcsr*pllkinkyfcgrsnyg
gyyftgsw*ygc*ryrfnq*w*yfrrn*fhwwyvydcckfnngfigckfnycsskivlkk
iikkkksltf*nlfnylf*i*fnycfsknhs*kkkk****kknknnflickt

Frame C:
fnpt*m***fhf*sgyhci*kiilk*k*k*k*kk*kiypclaiiiylynikinkk*k*IN
NNNNYNNSNNKMYNFFDRIKAPLSEYKRYAANHKKDDDFTDIEDKINCGQFPNEYGSNAI
ELPNSPTYNNNNNNNNGSPNVLKQSQYISFINPLSLPSSLIPPPPNYTSQQNLSDVMSNN
GGGSGVGVSSSNNNLNLRNTTVSMTSPRNVPIVTSPRNITISPTANIISVPAEISQCNNV
PNSIGSPPIEVEQSHLVPNSELNNNNNNNNNNNENVGEEDFQSLMDQSNKLQIQMQMLMQ
KMQQMQQLKQQLNLKHSSATNIYVPPRQVRVSGQKPPIRQRQFQMRPPQQSQQQFFDLPI
QEHEHDIPHSKRQEFEDSLRNTTTATTNFNEIEMQNLNQTSSRFGNSNTFYNPNFVNHSS
GSLDESTINVDSQYQQHEKDKDNSSQLSKTTMTTLPIVS---

---GIFFSFGSPHSILSPYTHFLRINSTDYNMERMVRLERLADKVIYGEVSCVEALEKLR
KILAKKPLYNIYLTTFSYIMSSFTIAFFFDVGWVEVGACSIIGFYVGLLCLLSSKVSLVG
RVLEALSSCGGAIIASLFNCYISPIPIFTVTLGGIISLLPGLGLTLAVAEISTRNLVSGT
SRLVGVFSCLLQLTFGIALGTKFSEVVMPVRDEVLPVTFPDWVMFIVIPFAAITFGVQLK
VHWREFWVIIIASYIGVTVGNWGSKYFGDVGAFFGSAAICALGNLYSRLTNISAVVPIMA
GIILLVPGSMGVKGIVSISDGDISGGIDFIGGMFMTAASLTMGLLVANLIIAPPKSF*kk
**kkknl*hfkiysiicfkfnliiaspkiilkkkknnnnkkrikiiflsakq

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15762-1 (Contig-U15762-1Q)
/CSM_Contig/Contig-U15762-1Q.Seq.d
(2620 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15762-1 (Contig-U15762-1Q) /CSM_Contig/Conti... 2930 0.0
Contig-U15344-1 (Contig-U15344-1Q) /CSM_Contig/Conti... 529 e-150
Contig-U13557-1 (Contig-U13557-1Q) /CSM_Contig/Conti... 519 e-147
Contig-U15295-1 (Contig-U15295-1Q) /CSM_Contig/Conti... 507 e-143
Contig-U12098-1 (Contig-U12098-1Q) /CSM_Contig/Conti... 78 8e-14
Contig-U08982-1 (Contig-U08982-1Q) /CSM_Contig/Conti... 48 7e-05
Contig-U15677-1 (Contig-U15677-1Q) /CSM_Contig/Conti... 44 0.001
Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Conti... 44 0.001
Contig-U15623-1 (Contig-U15623-1Q) /CSM_Contig/Conti... 42 0.004
Contig-U13711-1 (Contig-U13711-1Q) /CSM_Contig/Conti... 42 0.004

>Contig-U15762-1 (Contig-U15762-1Q) /CSM_Contig/Contig-U15762-1Q.Seq.d
Length = 2620

Score = 2930 bits (1478), Expect = 0.0
Identities = 1508/1508 (100%)
Strand = Plus / Plus


Query: 949 attcatcagccactaatatatatgtaccaccaagacaagttagagtgtctggtcaaaaac 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 attcatcagccactaatatatatgtaccaccaagacaagttagagtgtctggtcaaaaac 1008


Query: 1009 caccaattagacaaagacaatttcaaatgagacctccacaacaatctcaacaacaatttt 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 caccaattagacaaagacaatttcaaatgagacctccacaacaatctcaacaacaatttt 1068


Query: 1069 tcgatttaccaattcaagagcatgaacatgatataccccattcaaaaagacaagaatttg 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 tcgatttaccaattcaagagcatgaacatgatataccccattcaaaaagacaagaatttg 1128


Query: 1129 aagattcattaagaaacactacaactgcaacaacaaattttaatgaaattgaaatgcaaa 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 aagattcattaagaaacactacaactgcaacaacaaattttaatgaaattgaaatgcaaa 1188


Query: 1189 atttaaaccaaacttcaagcagatttggtaatagtaatacattttataacccaaattttg 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 atttaaaccaaacttcaagcagatttggtaatagtaatacattttataacccaaattttg 1248


Query: 1249 tgaaccatagtagtggcagtttagatgagtcaaccataaatgttgattcacaatatcaac 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 tgaaccatagtagtggcagtttagatgagtcaaccataaatgttgattcacaatatcaac 1308


Query: 1309 aacatgaaaaagataaagataattcaagtcaattatcaaaaactacaatgaccacattac 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 aacatgaaaaagataaagataattcaagtcaattatcaaaaactacaatgaccacattac 1368


Query: 1369 caatagtttctccnnnnnnnnnnctggtattttcttttcatttggttcacctcattcaat 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 caatagtttctccnnnnnnnnnnctggtattttcttttcatttggttcacctcattcaat 1428


Query: 1429 tctttcaccatatactcatttccttagaatcaattccaccgattacaatatggaacgtat 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 tctttcaccatatactcatttccttagaatcaattccaccgattacaatatggaacgtat 1488


Query: 1489 ggttagattggagagattggccgataaggttatctatggtgaagttagttgtgttgaagc 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 ggttagattggagagattggccgataaggttatctatggtgaagttagttgtgttgaagc 1548


Query: 1549 attggagaagttaagaaagattctagcaaagaagccattgtacaatatctatctcacaac 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 attggagaagttaagaaagattctagcaaagaagccattgtacaatatctatctcacaac 1608


Query: 1609 ttttagttatataatgtcatcattcaccattgccttctttttcgatgttggctgggtcga 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 ttttagttatataatgtcatcattcaccattgccttctttttcgatgttggctgggtcga 1668


Query: 1669 ggttggagcttgttcaatcattggattctatgttggccttttatgtctactctcgagtaa 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 ggttggagcttgttcaatcattggattctatgttggccttttatgtctactctcgagtaa 1728


Query: 1729 agtgtctttggttggcagagttttggaggccttgtcatcttgtggtggagcaatcattgc 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 agtgtctttggttggcagagttttggaggccttgtcatcttgtggtggagcaatcattgc 1788


Query: 1789 atcgttgttcaattgctacatttcgcctatccccatatttacagtgaccctgggcggcat 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 atcgttgttcaattgctacatttcgcctatccccatatttacagtgaccctgggcggcat 1848


Query: 1849 catatcgttgttgcctggtttaggcttgacattggccgtagcggagatttcaactagaaa 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 catatcgttgttgcctggtttaggcttgacattggccgtagcggagatttcaactagaaa 1908


Query: 1909 tctggttagtggcacctcaagattggttggtgttttctcttgtttattgcaattaacttt 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 tctggttagtggcacctcaagattggttggtgttttctcttgtttattgcaattaacttt 1968


Query: 1969 tggtattgcgttgggtacgaaattctcagaggtagtcatgccagtaagagacgaagtttt 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 tggtattgcgttgggtacgaaattctcagaggtagtcatgccagtaagagacgaagtttt 2028


Query: 2029 acctgtaactttccctgattgggtaatgtttattgtaattccgttcgctgccattacatt 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 acctgtaactttccctgattgggtaatgtttattgtaattccgttcgctgccattacatt 2088


Query: 2089 tggtgttcaattaaaagttcattggagagaattttgggttatcatcatcgctagttacat 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 tggtgttcaattaaaagttcattggagagaattttgggttatcatcatcgctagttacat 2148


Query: 2149 tggtgtaaccgttggtaattggggtagtaaatattttggtgatgttggtgctttctttgg 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 tggtgtaaccgttggtaattggggtagtaaatattttggtgatgttggtgctttctttgg 2208


Query: 2209 ttcagctgcaatttgtgctctaggtaacctttactcaagattaacaaatatttctgcggt 2268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 ttcagctgcaatttgtgctctaggtaacctttactcaagattaacaaatatttctgcggt 2268


Query: 2269 cgttccaattatggcgggtattattttactggttcctggtagtatgggtgttaaaggtat 2328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 cgttccaattatggcgggtattattttactggttcctggtagtatgggtgttaaaggtat 2328


Query: 2329 cgtttcaatcagtgatggtgatatttccggaggaattgatttcattggtggtatgtttat 2388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 cgtttcaatcagtgatggtgatatttccggaggaattgatttcattggtggtatgtttat 2388


Query: 2389 gactgctgcaagtttaacaatgggtttattggttgcaaatttaattattgctcctccaaa 2448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 gactgctgcaagtttaacaatgggtttattggttgcaaatttaattattgctcctccaaa 2448


Query: 2449 atcgttct 2456
||||||||
Sbjct: 2449 atcgttct 2456


Score = 739 bits (373), Expect = 0.0
Identities = 373/373 (100%)
Strand = Plus / Plus


Query: 411 ggttcaccaaacgttttaaaacaatctcaatatataagttttataaatccattatcatta 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggttcaccaaacgttttaaaacaatctcaatatataagttttataaatccattatcatta 470


Query: 471 ccatcatcattgataccaccaccaccaaattatacatcacaacaaaatctaagtgatgta 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ccatcatcattgataccaccaccaccaaattatacatcacaacaaaatctaagtgatgta 530


Query: 531 atgagtaataatggtggtggtagtggtgttggtgttagtagtagtaataataatttaaat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atgagtaataatggtggtggtagtggtgttggtgttagtagtagtaataataatttaaat 590


Query: 591 ttaagaaatacgacagtatcaatgacatcacctagaaatgtaccaatagttacatcacct 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttaagaaatacgacagtatcaatgacatcacctagaaatgtaccaatagttacatcacct 650


Query: 651 cgaaatattacaatctcacctactgcaaatataatttctgtacctgctgaaatttcacaa 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cgaaatattacaatctcacctactgcaaatataatttctgtacctgctgaaatttcacaa 710


Query: 711 tgtaataatgtaccgaattcaattggttcaccaccaattgaagttgagcaatcacattta 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgtaataatgtaccgaattcaattggttcaccaccaattgaagttgagcaatcacattta 770


Query: 771 gtaccaaatagcg 783
|||||||||||||
Sbjct: 771 gtaccaaatagcg 783


Score = 301 bits (152), Expect = 3e-81
Identities = 152/152 (100%)
Strand = Plus / Plus


Query: 231 gatagaatcaaagcgcctctatcggaatataaaaggtatgcagcgaatcataagaaagat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gatagaatcaaagcgcctctatcggaatataaaaggtatgcagcgaatcataagaaagat 290


Query: 291 gatgattttacagatattgaggataaaataaattgtggacaatttccgaatgaatatggt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gatgattttacagatattgaggataaaataaattgtggacaatttccgaatgaatatggt 350


Query: 351 agtaatgcaatcgagttaccaaattcacctac 382
||||||||||||||||||||||||||||||||
Sbjct: 351 agtaatgcaatcgagttaccaaattcacctac 382


Score = 125 bits (63), Expect = 4e-28
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 822 gaaaatgttggtgaagaagattttcaatcattaatggatcaatcgaataaattacaaatt 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaaaatgttggtgaagaagattttcaatcattaatggatcaatcgaataaattacaaatt 881


Query: 882 caa 884
|||
Sbjct: 882 caa 884


Score = 117 bits (59), Expect = 9e-26
Identities = 59/59 (100%)
Strand = Plus / Plus


Query: 1 aattcaatccaacataaatgtaataatagtttcatttttagtcaggataccactgcatt 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattcaatccaacataaatgtaataatagtttcatttttagtcaggataccactgcatt 59


Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 105 taaaagatctatccatgtttgg 126
||||||||||||||||||||||
Sbjct: 105 taaaagatctatccatgtttgg 126


Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 2537 gcttctccaaaaatcattctt 2557
|||||||||||||||||||||
Sbjct: 2537 gcttctccaaaaatcattctt 2557


Score = 40.1 bits (20), Expect = 0.017
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 2426 aatttaattattgctcctccaaaa 2449
||||||||||||||| ||||||||
Sbjct: 2525 aatttaattattgcttctccaaaa 2548


Score = 38.2 bits (19), Expect = 0.067
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 2602 tttcttatctgcaaaacaa 2620
|||||||||||||||||||
Sbjct: 2602 tttcttatctgcaaaacaa 2620


>Contig-U15344-1 (Contig-U15344-1Q) /CSM_Contig/Contig-U15344-1Q.Seq.d
Length = 505

Score = 529 bits (267), Expect = e-150
Identities = 392/451 (86%)
Strand = Plus / Plus


Query: 2004 tcatgccagtaagagacgaagttttacctgtaactttccctgattgggtaatgtttattg 2063
|||||||||||| | ||||| |||||||||||||||||||||| ||||||| ||||| ||
Sbjct: 1 tcatgccagtaaaanacgaanttttacctgtaactttccctgantgggtaangtttantg 60


Query: 2064 taattccgttcgctgccattacatttggtgttcaattaaaagttcattggagagaatttt 2123
||| |||||| |||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct: 61 taantccgttngctgccattacatttggtgttcaantaaaagttcattggaaanaatttt 120


Query: 2124 gggttatcatcatcgctagttacattggtgtaaccgttggtaattggggtagtaaatatt 2183
||||||| ||||||| |||||||| ||| |||||||||||||| |||||||||||| | |
Sbjct: 121 gggttatnatcatcgntagttacantggngtaaccgttggtaantggggtagtaaanant 180


Query: 2184 ttggtgatgttggtgctttctttggttcagctgcaatttgtgctctaggtaacctttact 2243
||||| | ||||| ||||| ||||||||| |||| | ||||||| ||||||||||||| |
Sbjct: 181 ttggtnangttggngctttttttggttcanctgcnanttgtgctttaggtaacctttant 240


Query: 2244 caagattaacaaatatttctgcggtcgttccaattatggcgggtattattttactggttc 2303
||| ||||||||| | || |||||||||||||| || |||||||| || |||||||| ||
Sbjct: 241 caanattaacaaananttttgcggtcgttccaantanggcgggtantantttactggntc 300


Query: 2304 ctggtagtatgggtgttaaaggtatcgtttcaatcagtgatggtgatatttccggaggaa 2363
||||||||| |||||||||| | |||| ||||| || ||| ||||| | |||| || |||
Sbjct: 301 ctggtagtangggtgttaaangnatcgcttcaancantganggtgananttccngangaa 360


Query: 2364 ttgatttcattggtggtatgtttatgactgctgcaagtttaacaatgggtttattggttg 2423
||||||||||||||||| ||||| ||||||||| | |||||| ||||||||| ||||||
Sbjct: 361 ntgatttcattggtggtangtttangactgctgcnantttaacnatgggtttantggttg 420


Query: 2424 caaatttaattattgctcctccaaaatcgtt 2454
|||| |||| || ||| || |||||||||||
Sbjct: 421 caaanttaantantgcncccccaaaatcgtt 451


>Contig-U13557-1 (Contig-U13557-1Q) /CSM_Contig/Contig-U13557-1Q.Seq.d
Length = 499

Score = 519 bits (262), Expect = e-147
Identities = 413/485 (85%)
Strand = Plus / Plus


Query: 1940 gttttctcttgtttattgcaattaacttttggtattgcgttgggtacgaaattctcagag 1999
||||| | ||||||| ||||| ||| |||||| | || |||||| ||||||| ||| ||
Sbjct: 13 gttttttnttgtttantgcaantaanttttggnantgngttgggnncgaaattttcaaag 72


Query: 2000 gtagtcatgccagtaagagacgaagttttacctgtaactttccctgattgggtaatgttt 2059
||||||| |||||||| | ||||| |||||||||||| ||||||||| ||||||| ||||
Sbjct: 73 gtagtcangccagtaaaanacgaanttttacctgtaantttccctgantgggtaangttt 132


Query: 2060 attgtaattccgttcgctgccattacatttggtgttcaattaaaagttcattggagagaa 2119
||||||| |||||| | |||| ||||||||||||||||| ||||| |||| |||| | ||
Sbjct: 133 attgtaantccgttngntgccnttacatttggtgttcaantaaaanttcantggaaanaa 192


Query: 2120 ttttgggttatcatcatcgctagttacattggtgtaaccgttggtaattggggtagtaaa 2179
|||||| ||||||||||| |||||||||||| |||||||||||||| ||||||| ||||
Sbjct: 193 ntttgggntatcatcatcgntagttacattggngtaaccgttggtaantggggtantaaa 252


Query: 2180 tattttggtgatgttggtgctttctttggttcagctgcaatttgtgctctaggtaacctt 2239
|||||||||| | ||| ||||| ||||| ||| |||||||||| ||| ||||||||| |
Sbjct: 253 nattttggtgangntggngctttntttggntcanctgcaatttgngctttaggtaaccnt 312


Query: 2240 tactcaagattaacaaatatttctgcggtcgttccaattatggcgggtattattttactg 2299
||||||| | ||||||||| || |||||| ||||| | || |||||| ||||||||| ||
Sbjct: 313 tactcaanantaacaaatanttttgcggtngttccnantanggcgggnattattttantg 372


Query: 2300 gttcctggtagtatgggtgttaaaggtatcgtttcaatcagtgatggtgatatttccgga 2359
| ||| ||||| | |||||||||||| ||||||||||||||||| ||||| |||||| ||
Sbjct: 373 gntccnggtagnangggtgttaaaggnatcgtttcaatcagtganggtganatttccnga 432


Query: 2360 ggaattgatttcattggtggtatgtttatgactgctgcaagtttaacaatgggtttattg 2419
||||||||||| ||||||| | ||||| |||||| |||| |||||| ||||||||| ||
Sbjct: 433 ngaattgatttcnttggtggnangtttangactgcngcaantttaacnatgggtttantg 492


Query: 2420 gttgc 2424
| |||
Sbjct: 493 gntgc 497


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,675
Number of Sequences: 8402
Number of extensions: 44675
Number of successful extensions: 6769
Number of sequences better than 10.0: 452
length of query: 2620
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2603
effective length of database: 7,932,708
effective search space: 20648838924
effective search space used: 20648838924
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.14
Homology vs DNA
Query= Contig-U15762-1 (Contig-U15762-1Q) /CSM_Contig/Contig-U15762-1Q.Seq.d
(2620 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ407614) Dictyostelium discoideum cDNA clone:dds43i06, 3' ... 1342 0.0 3
(BJ408333) Dictyostelium discoideum cDNA clone:dds45p11, 3' ... 1267 0.0 3
(BJ445250) Dictyostelium discoideum cDNA clone:ddv58m20, 3' ... 1255 0.0 2
(AU034130) Dictyostelium discoideum slug cDNA, clone SLB778. 1221 0.0 1
(BJ407306) Dictyostelium discoideum cDNA clone:dds38k02, 3' ... 1128 0.0 3
(BJ392837) Dictyostelium discoideum cDNA clone:dds29i05, 5' ... 737 0.0 3
(BJ360402) Dictyostelium discoideum cDNA clone:ddc5m24, 5' e... 856 0.0 2
(BJ418783) Dictyostelium discoideum cDNA clone:ddv34b01, 5' ... 523 0.0 5
(C25557) Dictyostelium discoideum slug cDNA, clone SLA296. 846 0.0 3
(AU060864) Dictyostelium discoideum slug cDNA, clone SLB778. 848 0.0 1
(AU034523) Dictyostelium discoideum slug cDNA, clone SLC382. 793 0.0 1
(BJ424364) Dictyostelium discoideum cDNA clone:ddv52o03, 5' ... 301 0.0 3
(BJ333673) Dictyostelium discoideum cDNA clone:dda43h15, 5' ... 363 0.0 4
(BJ443199) Dictyostelium discoideum cDNA clone:ddv52o03, 3' ... 650 0.0 1
(BJ396561) Dictyostelium discoideum cDNA clone:dds43i06, 5' ... 301 e-180 4
(BJ335343) Dictyostelium discoideum cDNA clone:dda49h22, 5' ... 301 e-179 4
(BJ339566) Dictyostelium discoideum cDNA clone:dda65f22, 5' ... 301 e-178 4
(BJ397619) Dictyostelium discoideum cDNA clone:dds46o23, 5' ... 301 e-177 4
(BJ397796) Dictyostelium discoideum cDNA clone:dds47k16, 5' ... 301 e-168 4
(BJ391628) Dictyostelium discoideum cDNA clone:dds24k15, 5' ... 301 e-165 4
(BJ335312) Dictyostelium discoideum cDNA clone:dda49a22, 5' ... 301 e-162 4
(BJ365705) Dictyostelium discoideum cDNA clone:ddc36f10, 5' ... 301 e-160 4
(BJ397209) Dictyostelium discoideum cDNA clone:dds45p11, 5' ... 293 e-159 4
(BJ408987) Dictyostelium discoideum cDNA clone:dds47k16, 3' ... 569 e-157 1
(BJ332021) Dictyostelium discoideum cDNA clone:dda37m24, 5' ... 301 e-156 3
(BJ426416) Dictyostelium discoideum cDNA clone:ddv58m20, 5' ... 301 e-155 3
(BJ395239) Dictyostelium discoideum cDNA clone:dds38k02, 5' ... 301 e-154 3
(BJ379883) Dictyostelium discoideum cDNA clone:ddc36f10, 3' ... 529 e-145 1
(BJ334501) Dictyostelium discoideum cDNA clone:dda46l16, 5' ... 301 e-145 2
(BJ437352) Dictyostelium discoideum cDNA clone:ddv34b01, 3' ... 519 e-142 1
(BJ352408) Dictyostelium discoideum cDNA clone:dda46l16, 3' ... 507 e-139 1
(AU052901) Dictyostelium discoideum slug cDNA, clone SLF291. 416 e-111 1
(BJ408785) Dictyostelium discoideum cDNA clone:dds46o23, 3' ... 329 3e-85 1
(BJ404623) Dictyostelium discoideum cDNA clone:dds29i05, 3' ... 315 5e-81 1
(BJ351474) Dictyostelium discoideum cDNA clone:dda43h15, 3' ... 297 1e-75 1
(BJ407399) Dictyostelium discoideum cDNA clone:dds38n10, 3' ... 70 7e-27 5
(BJ384494) Dictyostelium discoideum cDNA clone:ddc49m13, 3' ... 70 1e-18 2
(AC126591) Rattus norvegicus clone CH230-224C4, WORKING DRAF... 58 0.002 1
(BZ134514) CH230-431L7.TJ CHORI-230 Segment 2 Rattus norvegi... 58 0.002 1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 44 0.002 14
(AR549084) Sequence 4215 from patent US 6747137. 46 0.003 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 34 0.007 15
(AC132267) Mus musculus BAC clone RP24-393E11 from chromosom... 56 0.007 1
(AC007262) Homo sapiens chromosome 14 clone containing gene ... 56 0.007 1
(AZ328989) 1M0053H06F Mouse 10kb plasmid UUGC1M library Mus ... 56 0.007 1
(CR060238) Forward strand read from insert in 3'HPRT inserti... 56 0.007 1
(AC068972) Homo sapiens chromosome 8 clone RP11-146D11, WORK... 40 0.018 2
(AC090035) Homo sapiens chromosome 8 clone RP11-146D11 map 8... 40 0.018 2
(AC181897) Strongylocentrotus purpuratus clone R3-1016C08, W... 38 0.018 2
(AC161181) Mus musculus chromosome 3, clone RP23-10I23, comp... 54 0.027 1
(AC151970) Mus musculus BAC clone RP24-255F16 from chromosom... 54 0.027 1
(AC140403) Mus musculus BAC clone RP23-144M22 from 15, compl... 54 0.027 1
(AC103649) Mus musculus chromosome 3, clone RP24-359A15, com... 54 0.027 1
(AC127643) Rattus norvegicus clone CH230-130G18, *** SEQUENC... 54 0.027 1
(AC122650) Rattus norvegicus clone CH230-112P16, WORKING DRA... 54 0.027 1
(AC106216) Rattus norvegicus clone CH230-83A18, WORKING DRAF... 54 0.027 1
(AC181215) Strongylocentrotus purpuratus clone R3-4008N8, WO... 54 0.027 1
(AC181099) Strongylocentrotus purpuratus clone R3-3047E22, W... 54 0.027 1
(AC181081) Strongylocentrotus purpuratus clone R3-3048G17, W... 54 0.027 1
(AC180109) Strongylocentrotus purpuratus clone R3-4007G11, W... 54 0.027 1
(AC176444) Strongylocentrotus purpuratus clone R3-3068D20, W... 54 0.027 1
(AC168386) Strongylocentrotus purpuratus clone R3-4013A3, WO... 54 0.027 1
(EY330626) CAWY3611.fwd CAWY Helobdella robusta Subtracted E... 48 0.071 2
(BJ391617) Dictyostelium discoideum cDNA clone:dds24h17, 5' ... 42 0.085 2
(CV527063) CS_GIL_13G11_SP6 Blue crab gill, normalized Calli... 38 0.085 2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 48 0.093 15
(AF024654) Dictyostelium discoideum hybrid histidine kinase ... 46 0.10 3
(AC139185) Mus musculus BAC clone RP24-91B1 from 6, complete... 52 0.11 1
(AC146997) Arbacia punctulata clone BAP-144G2, WORKING DRAFT... 52 0.11 1
(AC114393) Rattus norvegicus clone CH230-122P20, *** SEQUENC... 52 0.11 1
(AC106294) Rattus norvegicus clone CH230-76O10, WORKING DRAF... 52 0.11 1
(AC106163) Rattus norvegicus clone CH230-56H9, WORKING DRAFT... 52 0.11 1
(AC099369) Rattus norvegicus clone CH230-99L16, WORKING DRAF... 52 0.11 1
(AC166824) Mus musculus chromosome 6 clone RP23-385C17, *** ... 52 0.11 1
(BB938835) Trifolium pratense cDNA clone:RCC12156. 52 0.11 1
(FE808874) CCAG28261.b1 CCAG Petrolisthes cinctipes heart, g... 52 0.11 1
(FE807824) CCAG27650.b1 CCAG Petrolisthes cinctipes heart, g... 52 0.11 1
(FE796306) CCAG20747.b1 CCAG Petrolisthes cinctipes heart, g... 52 0.11 1
(FE787162) CCAG15369.b7 CCAG Petrolisthes cinctipes heart, g... 52 0.11 1
(FE779616) CCAG10945.b3 CCAG Petrolisthes cinctipes heart, g... 52 0.11 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.21 14
(ES756452) C20L_79_E04_E002.g1 USDA-Tifton Peanut Library C2... 42 0.22 2
(AC147224) Mus musculus BAC clone RP23-101E7 from 15, comple... 36 0.24 2
(AC121898) Mus musculus BAC clone RP24-161A24 from chromosom... 36 0.24 2
(AC021482) Homo sapiens chromosome , clone RP11-15K1, comple... 40 0.25 2
(AC079071) Homo sapiens chromosome 8, clone RP11-43G18, comp... 40 0.25 2
(AC138646) Homo sapiens chromosome 8, clone RP11-1114I9, com... 40 0.25 2
(AL928862) Mouse DNA sequence from clone RP23-88J10 on chrom... 38 0.25 2
(DJ060365) Method and nucleic acids for the improved treatme... 36 0.29 2
(CS124712) Sequence 398 from Patent WO2005059172. 36 0.29 2
(DJ402665) Methods and nucleic acids for analyses of colo re... 36 0.30 2
(AC136285) Homo sapiens chromosome 16 clone RP11-899L11, com... 44 0.30 3
(DJ402737) Methods and nucleic acids for analyses of colo re... 36 0.30 2
(AJ315672) Cryptosporidium parvum microsatellites CP17a and ... 34 0.32 2
(AJ562864) Cryptosporidium parvum GSS, PAC clone pica_0012_a... 34 0.32 2
(AF337016) Aphidius ervi clone 34 microsatellite sequence. 38 0.35 3
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 38 0.39 8
(CT030142) Mouse DNA sequence from clone RP23-422H22 on chro... 50 0.43 1
(AC165349) Mus musculus BAC clone RP23-212M22 from chromosom... 50 0.43 1
(AC118018) Mus musculus chromosome 17, clone RP23-458D20, co... 50 0.43 1
(AP003086) Homo sapiens genomic DNA, chromosome 11q, clone:R... 50 0.43 1
(AC021860) Homo sapiens BAC clone RP11-617D20 from 4, comple... 50 0.43 1
(AC131023) Rattus norvegicus clone CH230-48B3, WORKING DRAFT... 50 0.43 1
(AC095958) Rattus norvegicus clone CH230-26I11, *** SEQUENCI... 50 0.43 1
(AC095897) Rattus norvegicus clone CH230-10N21, *** SEQUENCI... 50 0.43 1
(AC087511) Mus musculus strain C57BL6/J clone RP23-169K1, WO... 50 0.43 1
(AC073703) Mus musculus clone RP23-16E5, WORKING DRAFT SEQUE... 50 0.43 1
(AC058804) Homo sapiens clone RP11-452H21, WORKING DRAFT SEQ... 50 0.43 1
(AC180690) Strongylocentrotus purpuratus clone R3-3086M14, W... 50 0.43 1
(AC180671) Strongylocentrotus purpuratus clone R3-3019N20, W... 50 0.43 1
(AZ251130) RPCI-23-59G17.TJB RPCI-23 Mus musculus genomic cl... 50 0.43 1
(DU473463) 1098415701627 CHORI-243 Ovis aries genomic clone ... 50 0.43 1
(DU271802) 1098415990056 CHORI-243 Ovis aries genomic clone ... 50 0.43 1
(DH708923) Rattus norvegicus DNA, BAC clone: RNB1-271O19, 5'... 50 0.43 1
(EL745687) LV0295045 Taenia solium UNAM-cd2_larva Taenia sol... 50 0.43 1
(AA563788) nk18f09.s1 NCI_CGAP_Co11 Homo sapiens cDNA clone ... 50 0.43 1
(FE244924) CAPG8466.fwd CAPG Naegleria gruberi amoeba stage ... 50 0.43 1
(AW576199) UI-HF-BN0-afr-f-04-0-UI.s1 NIH_MGC_50 Homo sapien... 50 0.43 1
(BM622004) 17000687475289 A.Gam.ad.cDNA1 Anopheles gambiae c... 38 0.68 2
(CR534959) Anopheles gambiae EST, clone AGAF333TR. 38 0.69 2
(BM655045) 17000687385577 A.Gam.ad.cDNA1 Anopheles gambiae c... 38 0.73 2
(BH400844) AG-ND-175F11.TF ND-TAM Anopheles gambiae genomic ... 38 0.78 2
(BJ374862) Dictyostelium discoideum cDNA clone:ddc16f17, 3' ... 44 0.80 2
(AC136859) Rattus norvegicus clone CH230-482E23, WORKING DRA... 46 0.81 3
(AL935062) Zebrafish DNA sequence from clone CH211-231F23 in... 38 0.90 2
(AC177694) Strongylocentrotus purpuratus clone R3-1013E5, WO... 34 0.92 2
(AC181423) Strongylocentrotus purpuratus clone R3-50E5, WORK... 34 0.93 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.95 14
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 1.1 18
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 1.3 12
(AC174108) Strongylocentrotus purpuratus clone R3-3017G3, WO... 46 1.4 5
(AF451898) Heliothis zea virus 1, complete genome. 48 1.7 1
(CU210928) Mouse DNA sequence from clone CH29-567F20 on chro... 48 1.7 1
(AC167546) Mus musculus chromosome 18, clone wi1-1256K21, co... 48 1.7 1
(AC163095) Mus musculus chromosome 18, clone RP23-208G10, co... 48 1.7 1
(AC157608) Mus musculus chromosome 5, clone RP23-343F16, com... 48 1.7 1
(AC125024) Mus musculus chromosome 5, clone RP24-320B23, com... 48 1.7 1
(AC189640) Brassica rapa subsp. pekinensis clone KBrS006L21,... 48 1.7 1
(CS468860) Sequence 51 from Patent EP1748080. 48 1.7 1
(CS468859) Sequence 50 from Patent EP1748080. 48 1.7 1
(CS419337) Sequence 51 from Patent WO2006094836. 48 1.7 1
(CS419336) Sequence 50 from Patent WO2006094836. 48 1.7 1
(AR552768) Sequence 7899 from patent US 6747137. 48 1.7 1
(AY184993) Dictyostelium discoideum inositol 5-phosphatase 2... 48 1.7 1
(AC131529) Rattus norvegicus clone CH230-434C6, *** SEQUENCI... 48 1.7 1
(AC120684) Rattus norvegicus clone CH230-13M5, *** SEQUENCIN... 48 1.7 1
(AC111974) Rattus norvegicus clone CH230-268E11, WORKING DRA... 48 1.7 1
(AC109421) Rattus norvegicus clone CH230-320P6, *** SEQUENCI... 48 1.7 1
(AC107186) Rattus norvegicus clone CH230-130H3, *** SEQUENCI... 48 1.7 1
(AC098523) Rattus norvegicus clone CH230-72H6, *** SEQUENCIN... 48 1.7 1
(AC095194) Rattus norvegicus clone CH230-5H20, *** SEQUENCIN... 48 1.7 1
(AC230594) Bos taurus clone CH240-504F23, WORKING DRAFT SEQU... 48 1.7 1
(AC223299) Bos taurus clone CH240-422O7, WORKING DRAFT SEQUE... 48 1.7 1
(AC201212) Strongylocentrotus purpuratus clone R3-15D9, WORK... 48 1.7 1
(AC189236) Brassica rapa subsp. pekinensis clone KBrB014N06,... 48 1.7 1
(AC177243) Strongylocentrotus purpuratus clone R3-1034F13, W... 48 1.7 1
(AC175882) Strongylocentrotus purpuratus clone R3-15C9, WORK... 48 1.7 1
(AK172589) Mus musculus activated spleen cDNA, RIKEN full-le... 48 1.7 1
(DH810119) Rattus norvegicus DNA, BAC clone: RNB1-408O11, 5'... 48 1.7 1
(DH659642) Rattus norvegicus DNA, BAC clone: RNB1-205K11, 5'... 48 1.7 1
(DE941155) Macropus eugenii DNA, BAC clone: MEB1-135K03_R, 3... 48 1.7 1
(DE220550) Trifolium pratense DNA, clone:RCG11654. 48 1.7 1
(DN739012) Cm_mx0_52b06_SP6 Green Shore Crab Multiple Tissue... 48 1.7 1
(DN635214) Cm_mx0_44b10_SP6 Green Shore Crab Multiple Tissue... 48 1.7 1
(AM759678) Ephydatia muelleri EST, 5' end sequence, clone IL... 48 1.7 1
(CU739951) Phaeodactylum tricornutum mRNA 5-prime sequence f... 48 1.7 1
(CT934679) Phaeodactylum tricornutum 5-PRIME EST from clone ... 48 1.7 1
(CK085463) RG2_C08 Cucumber leaf Cucumis sativus cDNA, mRNA ... 48 1.7 1
(BJ375994) Dictyostelium discoideum cDNA clone:ddc20d22, 3' ... 48 1.7 1
(BB938982) Trifolium pratense cDNA clone:RCC12329. 48 1.7 1
(EY293794) CAWX11324.fwd CAWX Helobdella robusta Primary Ear... 48 1.7 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 40 2.1 13
(AM462955) Vitis vinifera contig VV78X039814.1, whole genome... 40 2.8 2
(AC180529) Strongylocentrotus purpuratus clone R3-3098G16, W... 44 2.9 4
(BJ429122) Dictyostelium discoideum cDNA clone:ddv2n08, 3' e... 38 3.0 2
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 42 3.1 9
(AG180791) Pan troglodytes DNA, clone: RP43-053H15.T7. 44 3.2 2
(AR547893) Sequence 3024 from patent US 6747137. 42 3.2 2
(AC109772) Rattus norvegicus clone CH230-77L19, WORKING DRAF... 34 3.2 2
(CU407186) Pig DNA sequence from clone CH242-275I14 on chrom... 36 3.3 2
(AC137898) Homo sapiens chromosome 17, clone RP11-101O21, co... 32 3.3 2
(AC186126) Felis catus clone RP86-87E6, WORKING DRAFT SEQUEN... 32 3.3 2
(AC134205) Rattus norvegicus clone CH230-110I22, *** SEQUENC... 34 3.4 2
(FP101911) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 3.4 2
(AC189676) Trichinella spiralis BAC clone TS195-2H12 from ch... 36 3.4 2
(AC213013) Populus trichocarpa clone POP018-B03, complete se... 38 3.5 4
(CT027782) Zebrafish DNA sequence from clone DKEY-222N1 in l... 38 3.5 7
(DE971839) Macropus eugenii DNA, BAC clone: MEB1-177D10_R, 3... 38 3.8 2
(ER808688) PPTEB45TR Solanum tuberosum RHPOTKEY BAC ends Sol... 36 3.8 2
(CQ346109) Sequence 20203 from Patent WO0157275. 42 4.1 2
(CQ309481) Sequence 20586 from Patent WO0186003. 42 4.1 2
(CQ271880) Sequence 20141 from Patent WO0157277. 42 4.1 2
(CQ234154) Sequence 20993 from Patent WO0157273. 42 4.1 2
(CQ150816) Sequence 20838 from Patent WO0157276. 42 4.1 2
(CQ112007) Sequence 20866 from Patent WO0157272. 42 4.1 2
(EY336673) CAWY784.fwd CAWY Helobdella robusta Subtracted Ea... 34 4.4 2
(FC829729) CBHI3022.fwd CBHI Metridium senile tentacle Metri... 36 4.4 2
(DX984904) CHORI103-2D6.TJ CHORI103 Schistosoma mansoni geno... 36 4.4 2
(BJ430833) Dictyostelium discoideum cDNA clone:ddv9a03, 3' e... 36 4.4 2
(FE146011) LV_HP_RA50O01r Litopenaeus vannamei hepatopancrea... 32 4.4 2
(BJ339867) Dictyostelium discoideum cDNA clone:dda10a19, 3' ... 36 4.4 2
(BJ398212) Dictyostelium discoideum cDNA clone:dds11a17, 3' ... 36 4.4 2
(BJ377878) Dictyostelium discoideum cDNA clone:ddc26c09, 3' ... 36 4.4 2
(BJ374422) Dictyostelium discoideum cDNA clone:ddc7a21, 3' e... 36 4.4 2
(AU062021) Dictyostelium discoideum slug cDNA, clone SLH238. 34 4.5 2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 34 4.9 10
(EF868134) Mus musculus C57BL/6N IST11958F11HMF1 gene trap e... 38 5.0 2
(DN573307) 92269154 Sea Urchin primary mesenchyme cell cDNA ... 34 5.3 3
(EF974918) Mus musculus C57BL/6N IST12783D10HMF1 gene trap e... 38 5.5 2
(AC116918) Dictyostelium discoideum chromosome 2 map 6143698... 38 6.0 6
(CR925805) Zebrafish DNA sequence from clone DKEY-99N20 in l... 46 6.7 1
(CR925795) Zebrafish DNA sequence from clone DKEY-25C9 in li... 46 6.7 1
(CR391914) Zebrafish DNA sequence from clone CH211-69O18 in ... 46 6.7 1
(CR388135) Zebrafish DNA sequence from clone CH211-152C12 in... 46 6.7 1
(BX470077) Zebrafish DNA sequence from clone CH211-136P17 in... 46 6.7 1
(AU048002) Rattus norvegicus, OTSUKA clone, 519c06, microsat... 46 6.7 1
(CT030242) Mouse DNA sequence from clone RP24-66D20 on chrom... 46 6.7 1
(AL954351) Mouse DNA sequence from clone RP23-109H4 on chrom... 46 6.7 1
(AL929070) Mouse DNA sequence from clone RP23-199L4 on chrom... 46 6.7 1
(AL928566) Mouse DNA sequence from clone RP23-311A20 on chro... 46 6.7 1
(AL833806) Mouse DNA sequence from clone RP23-425H11 on chro... 46 6.7 1
(AL773505) Mouse DNA sequence from clone RP23-209M19 on chro... 46 6.7 1
(AL672179) Mouse DNA sequence from clone RP23-468C6 on chrom... 46 6.7 1
(AL669921) Mouse DNA sequence from clone RP23-67P9 on chromo... 46 6.7 1
(AL589902) Mouse DNA sequence from clone RP23-108D12 on chro... 46 6.7 1
(AC167554) Mus musculus chromosome 15, clone RP24-281M24, co... 46 6.7 1
(AC166798) Mus musculus chromosome 3, clone RP23-442J19, com... 46 6.7 1
(AC165408) Mus musculus chromosome 18, clone wi1-2909J7, com... 46 6.7 1
(AC162298) Mus musculus chromosome 1, clone RP24-285P15, com... 46 6.7 1
(AC160467) Mus musculus chromosome 1, clone RP23-382C4, comp... 46 6.7 1
(AC157548) Mus musculus chromosome 18, clone RP24-310H1, com... 46 6.7 1
(AC154704) Mus musculus BAC clone RP24-349I24 from chromosom... 46 6.7 1
(AC154471) Mus musculus BAC clone RP23-195D3 from chromosome... 46 6.7 1
(AC154452) Mus musculus BAC clone RP24-172H10 from 14, compl... 46 6.7 1
(AC154348) Mus musculus BAC clone RP24-531G19 from 16, compl... 46 6.7 1
(AC141896) Mus musculus BAC clone RP23-238B2 from 5, complet... 46 6.7 1
(AC140477) Mus musculus BAC clone RP24-132G6 from chromosome... 46 6.7 1
(AC131721) Mus musculus BAC clone RP23-142L24 from chromosom... 46 6.7 1
(AC130830) Mus musculus BAC clone RP23-474G1 from chromosome... 46 6.7 1
(AC130829) Mus musculus BAC clone RP23-451I11 from 12, compl... 46 6.7 1
(AC130711) Mus musculus BAC clone RP23-22M24 from chromosome... 46 6.7 1
(AC124777) Mus musculus BAC clone RP23-90I17 from chromosome... 46 6.7 1
(AC124424) Mus musculus BAC clone RP24-230J3 from chromosome... 46 6.7 1
(AC123044) Mus musculus BAC clone RP24-548B7 from chromosome... 46 6.7 1
(AC115742) Mus musculus chromosome 7, clone RP23-477E13, com... 46 6.7 1
(AC114916) Mus musculus BAC clone RP23-68E10 from 15, comple... 46 6.7 1
(AC112926) Mus musculus chromosome 3, clone RP23-215M7, comp... 46 6.7 1
(AC110551) Mus musculus chromosome 7, clone RP23-245P16, com... 46 6.7 1
(AC107703) Mus musculus, clone RP23-472H1, complete sequence. 46 6.7 1
(AC102544) Mus musculus chromosome 8, clone RP23-118B13, com... 46 6.7 1
(AC083816) Mus musculus X BAC RP23-330G24 (Roswell Park Canc... 46 6.7 1
(AC187497) Rhesus macaque BAC clone CH250-65H12 from chromos... 46 6.7 1
(AP007163) Aspergillus oryzae RIB40 genomic DNA, SC166. 46 6.7 1
(AM426170) Vitis vinifera contig VV78X124184.25, whole genom... 46 6.7 1
(AM270013) Aspergillus niger contig An02c0180, complete genome. 46 6.7 1
(AF312895) Phytophthora cinnamomi clone f21 microsatellite s... 46 6.7 1
(AC217586) Populus trichocarpa clone POP025-M11, complete se... 46 6.7 1
(EA483630) Sequence 1280 from patent US 7345217. 46 6.7 1
(DD139820) Sulfatases and methods of use thereof. 46 6.7 1
(CQ613494) Sequence 41252 from Patent WO0171042. 46 6.7 1
(CQ613493) Sequence 41251 from Patent WO0171042. 46 6.7 1
(CQ613289) Sequence 41047 from Patent WO0171042. 46 6.7 1
(AX647245) Sequence 1437 from Patent EP1270724. 46 6.7 1
(AX573202) Sequence 24 from Patent WO02059327. 46 6.7 1
(EU040277) Cancer pagurus clone Cpag-4 microsatellite sequence. 46 6.7 1
(DQ191761) Monosiga ovata Hoglet (hoglet) mRNA, complete cds. 46 6.7 1
(BX538353) Cryptosporidium parvum chromosome 6, complete seq... 46 6.7 1
(AY471868) Cryptosporidium parvum CP2 mRNA, complete cds. 46 6.7 1
(AY190971) Biston betularia microsatellite BBCAG2B1_C4 seque... 46 6.7 1
(AY013583) Haliotis kamtschatkana clone Hka85 microsatellite... 46 6.7 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 46 6.7 1
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 46 6.7 1
(AC007594) Drosophila melanogaster, chromosome 3R, region 87... 46 6.7 1
(AB302955) Corbicula fluminea Msx gene for Msx protein, comp... 46 6.7 1
(AL049849) Homo sapiens chromosome 21 BAC B1L1C6. 46 6.7 1
(AC105245) Homo sapiens chromosome 18, clone CTD-2515C13, co... 46 6.7 1
(AC097061) Homo sapiens chromosome 1 clone RP11-415L24, comp... 46 6.7 1
(AC090349) Homo sapiens chromosome 18, clone RP11-844N22, co... 46 6.7 1
(AC073533) Homo sapiens X BAC RP11-589J20 (Roswell Park Canc... 46 6.7 1
(AC019043) Homo sapiens BAC clone RP11-11B21 from 7, complet... 46 6.7 1
(AC011359) Homo sapiens chromosome 5 clone CTC-370H24, compl... 46 6.7 1
(AC009549) Homo sapiens chromosome 11, clone RP11-359E10, co... 46 6.7 1
(AC008070) Homo sapiens BAC clone RP11-368J13 from 2, comple... 46 6.7 1
(AC007543) Homo sapiens 12p12 BAC RPCI11-1018J8 (Roswell Par... 46 6.7 1
(AC005351) Homo sapiens chromosome 5, BAC clone 78c6 (LBNL H... 46 6.7 1
(AC005040) Homo sapiens BAC clone RP11-519H15 from 2, comple... 46 6.7 1
(AC160557) Mus musculus chromosome 5 clone RP23-10E7 map 5, ... 46 6.7 1
(AC149965) Strongylocentrotus purpuratus clone R3-32B5, WORK... 46 6.7 1
(AC147463) Otolemur garnettii clone CH256-169M5, WORKING DRA... 46 6.7 1
(AC141189) Rattus norvegicus clone CH230-343I21, WORKING DRA... 46 6.7 1
(AC140114) Rattus norvegicus clone CH230-466I4, WORKING DRAF... 46 6.7 1
(AC139623) Danio rerio strain Tue clone CH211-216G21, WORKIN... 46 6.7 1
(AC139604) Rattus norvegicus clone CH230-203N1, *** SEQUENCI... 46 6.7 1
(AC137272) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 6.7 1
(AC137226) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 6.7 1
(AC137187) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 6.7 1
(AC136557) Rattus norvegicus clone CH230-66G6, *** SEQUENCIN... 46 6.7 1
(AC136464) Rattus norvegicus clone CH230-124A11, *** SEQUENC... 46 6.7 1
(AC135443) Rattus norvegicus clone CH230-262C23, WORKING DRA... 46 6.7 1
(AC135304) Rattus norvegicus clone CH230-89K7, *** SEQUENCIN... 46 6.7 1
(AC135011) Rattus norvegicus clone CH230-4A10, *** SEQUENCIN... 46 6.7 1
(AC134643) Rattus norvegicus clone CH230-254O4, *** SEQUENCI... 46 6.7 1
(AC134483) Rattus norvegicus clone CH230-403F3, WORKING DRAF... 46 6.7 1
(AC134148) Rattus norvegicus clone CH230-354K3, *** SEQUENCI... 46 6.7 1
(AC134094) Rattus norvegicus clone CH230-34B17, *** SEQUENCI... 46 6.7 1
(AC133131) Rattus norvegicus clone CH230-77J17, WORKING DRAF... 46 6.7 1
(AC133039) Rattus norvegicus clone CH230-391P7, WORKING DRAF... 46 6.7 1
(AC132047) Rattus norvegicus clone CH230-278L9, WORKING DRAF... 46 6.7 1
(AC131467) Rattus norvegicus clone CH230-133G24, WORKING DRA... 46 6.7 1
(AC130595) Rattus norvegicus clone CH230-393M7, WORKING DRAF... 46 6.7 1
(AC130073) Rattus norvegicus clone CH230-173O20, *** SEQUENC... 46 6.7 1
(AC129516) Homo sapiens chromosome 11 clone RP11-733A11 map ... 46 6.7 1
(AC129383) Rattus norvegicus clone CH230-36A10, *** SEQUENCI... 46 6.7 1
(AC129237) Rattus norvegicus clone CH230-26C8, WORKING DRAFT... 46 6.7 1
(AC128761) Rattus norvegicus clone CH230-190H17, WORKING DRA... 46 6.7 1
(AC128508) Rattus norvegicus clone CH230-35D21, *** SEQUENCI... 46 6.7 1
(AC128420) Rattus norvegicus clone CH230-142B17, WORKING DRA... 46 6.7 1
(AC128351) Rattus norvegicus clone CH230-52D19, *** SEQUENCI... 46 6.7 1
(AC128133) Rattus norvegicus clone CH230-396J24, WORKING DRA... 46 6.7 1
(AC128110) Rattus norvegicus clone CH230-410C11, WORKING DRA... 46 6.7 1
(AC127968) Rattus norvegicus clone CH230-171F15, *** SEQUENC... 46 6.7 1
(AC127156) Rattus norvegicus clone CH230-7B10, *** SEQUENCIN... 46 6.7 1
(AC122640) Rattus norvegicus clone CH230-219N24, WORKING DRA... 46 6.7 1
(AC122591) Rattus norvegicus clone CH230-155K3, *** SEQUENCI... 46 6.7 1
(AC121731) Rattus norvegicus clone CH230-233N4, WORKING DRAF... 46 6.7 1
(AC121456) Rattus norvegicus clone CH230-262H14, *** SEQUENC... 46 6.7 1
(AC121339) Homo sapiens clone RP11-454C12, *** SEQUENCING IN... 46 6.7 1
(AC120694) Rattus norvegicus clone CH230-49N4, WORKING DRAFT... 46 6.7 1
(AC119491) Rattus norvegicus clone CH230-498C19, WORKING DRA... 46 6.7 1
(AC119130) Rattus norvegicus clone CH230-414I23, *** SEQUENC... 46 6.7 1
(AC119090) Rattus norvegicus clone CH230-184E8, *** SEQUENCI... 46 6.7 1
(AC118508) Rattus norvegicus clone CH230-229D18, WORKING DRA... 46 6.7 1
(AC118120) Rattus norvegicus clone CH230-26C23, *** SEQUENCI... 46 6.7 1
(AC117151) Rattus norvegicus clone CH230-79I2, WORKING DRAFT... 46 6.7 1
(AC114154) Rattus norvegicus clone CH230-149K22, WORKING DRA... 46 6.7 1
(AC113657) Rattus norvegicus clone CH230-261A7, WORKING DRAF... 46 6.7 1
(AC112358) Rattus norvegicus clone CH230-248B1, WORKING DRAF... 46 6.7 1
(AC112086) Rattus norvegicus clone CH230-332D11, *** SEQUENC... 46 6.7 1
(AC112045) Rattus norvegicus clone CH230-94A1, WORKING DRAFT... 46 6.7 1
(AC111576) Rattus norvegicus clone CH230-68K10, *** SEQUENCI... 46 6.7 1
(AC111525) Rattus norvegicus clone CH230-147J9, *** SEQUENCI... 46 6.7 1
(AC111428) Rattus norvegicus clone CH230-246F11, WORKING DRA... 46 6.7 1
(AC109910) Rattus norvegicus clone CH230-53N4, *** SEQUENCIN... 46 6.7 1
(AC109561) Rattus norvegicus clone CH230-287F11, *** SEQUENC... 46 6.7 1
(AC108595) Rattus norvegicus clone CH230-216D22, WORKING DRA... 46 6.7 1
(AC107599) Rattus norvegicus clone CH230-92G12, *** SEQUENCI... 46 6.7 1
(AC107474) Rattus norvegicus clone CH230-112C3, WORKING DRAF... 46 6.7 1
(AC107351) Rattus norvegicus clone CH230-92G10, WORKING DRAF... 46 6.7 1
(AC107188) Rattus norvegicus clone CH230-82I10, *** SEQUENCI... 46 6.7 1
(AC107169) Rattus norvegicus clone CH230-69H23, *** SEQUENCI... 46 6.7 1
(AC106542) Rattus norvegicus clone CH230-91P1, WORKING DRAFT... 46 6.7 1
(AC106264) Rattus norvegicus clone CH230-53K15, *** SEQUENCI... 46 6.7 1
(AC106145) Rattus norvegicus clone CH230-183F8, *** SEQUENCI... 46 6.7 1
(AC105718) Rattus norvegicus clone CH230-187A11, *** SEQUENC... 46 6.7 1
(AC103183) Rattus norvegicus clone CH230-105P20, WORKING DRA... 46 6.7 1
(AC102500) Mus musculus clone RP24-283O18, WORKING DRAFT SEQ... 46 6.7 1
(AC100261) Mus musculus clone RP23-66F5, LOW-PASS SEQUENCE S... 46 6.7 1
(AC099658) Rattus norvegicus clone CH230-200K4, WORKING DRAF... 46 6.7 1
(AC099656) Rattus norvegicus clone CH230-11K17, WORKING DRAF... 46 6.7 1
(AC099426) Rattus norvegicus clone CH230-209O11, WORKING DRA... 46 6.7 1
(AC098122) Rattus norvegicus clone CH230-133H7, WORKING DRAF... 46 6.7 1
(AC098042) Rattus norvegicus clone CH230-60N19, WORKING DRAF... 46 6.7 1
(AC097242) Rattus norvegicus clone CH230-89C24, *** SEQUENCI... 46 6.7 1
(AC096475) Rattus norvegicus clone CH230-53F8, WORKING DRAFT... 46 6.7 1
(AC095424) Rattus norvegicus clone CH230-7A8, *** SEQUENCING... 46 6.7 1
(AC095407) Rattus norvegicus clone CH230-7B9, *** SEQUENCING... 46 6.7 1
(AC095202) Rattus norvegicus clone CH230-9I10, *** SEQUENCIN... 46 6.7 1
(AC094593) Rattus norvegicus clone CH230-4D11, *** SEQUENCIN... 46 6.7 1
(DQ273271) Asparagus officinalis clone B4-L7-94, *** SEQUENC... 46 6.7 1
(AC094025) Rattus norvegicus clone CH230-12O16, *** SEQUENCI... 46 6.7 1
(AC091323) Mus musculus chromosome 17 clone RP23-333E5 map 1... 46 6.7 1
(AC073105) Homo sapiens chromosome 2 clone RP11-464P18, WORK... 46 6.7 1
(AC027577) Homo sapiens chromosome 18 clone RP11-165M10 map ... 46 6.7 1
(AP001396) Homo sapiens genomic DNA, chromosome 18q12 clone:... 46 6.7 1
(AP001322) Homo sapiens genomic DNA, chromosome 18q12 clone:... 46 6.7 1
(AC223194) Bos taurus clone CH240-426N8, WORKING DRAFT SEQUE... 46 6.7 1
(AC201587) Strongylocentrotus purpuratus clone R3-4017C15, W... 46 6.7 1
(AC201329) Strongylocentrotus purpuratus clone R3-16M4, WORK... 46 6.7 1
(AC185727) Bos taurus clone RP42-234E11, WORKING DRAFT SEQUE... 46 6.7 1
(AC184611) Strongylocentrotus purpuratus clone R3-3085G2, WO... 46 6.7 1
(AC184579) Strongylocentrotus purpuratus clone R3-3064O3, WO... 46 6.7 1
(AC184564) Strongylocentrotus purpuratus clone R3-3052G21, W... 46 6.7 1
(AC184555) Strongylocentrotus purpuratus clone R3-8A9, WORKI... 46 6.7 1
(AC184467) Strongylocentrotus purpuratus clone R3-4001G11, W... 46 6.7 1
(AC184429) Strongylocentrotus purpuratus clone R3-3089I6, WO... 46 6.7 1
(AC184419) Strongylocentrotus purpuratus clone R3-3089B19, W... 46 6.7 1
(AC184179) Strongylocentrotus purpuratus clone R3-6C4, WORKI... 46 6.7 1
(AC181380) Strongylocentrotus purpuratus clone R3-4D13, WORK... 46 6.7 1
(AC181266) Strongylocentrotus purpuratus clone R3-4012L23, W... 46 6.7 1
(AC181216) Strongylocentrotus purpuratus clone R3-4008O05, W... 46 6.7 1
(AC181115) Strongylocentrotus purpuratus clone R3-3043N23, W... 46 6.7 1
(AC181074) Strongylocentrotus purpuratus clone R3-3047N01, W... 46 6.7 1
(AC180944) Strongylocentrotus purpuratus clone R3-3026K08, W... 46 6.7 1
(AC180846) Strongylocentrotus purpuratus clone R3-3070P10, W... 46 6.7 1
(AC180681) Strongylocentrotus purpuratus clone R3-3087P23, W... 46 6.7 1
(AC180526) Strongylocentrotus purpuratus clone R3-3099F22, W... 46 6.7 1
(AC180392) Strongylocentrotus purpuratus clone R3-3106E8, WO... 46 6.7 1
(AC180047) Strongylocentrotus purpuratus clone R3-25E02, WOR... 46 6.7 1
(AC179911) Strongylocentrotus purpuratus clone R3-1003F14, W... 46 6.7 1
(AC179457) Strongylocentrotus purpuratus clone R3-63G17, WOR... 46 6.7 1
(AC179318) Strongylocentrotus purpuratus clone R3-1102O20, W... 46 6.7 1
(AC179190) Strongylocentrotus purpuratus clone R3-4019E18, W... 46 6.7 1
(AC178897) Strongylocentrotus purpuratus clone R3-3114J14, W... 46 6.7 1
(AC178738) Strongylocentrotus purpuratus clone R3-13L11, WOR... 46 6.7 1
(AC178486) Strongylocentrotus purpuratus clone R3-3033N16, W... 46 6.7 1
(AC178450) Strongylocentrotus purpuratus clone R3-3039F18, W... 46 6.7 1
(AC178344) Strongylocentrotus purpuratus clone R3-3105E13, W... 46 6.7 1
(AC178238) Strongylocentrotus purpuratus clone R3-3086D15, W... 46 6.7 1
(AC178118) Strongylocentrotus purpuratus clone R3-3074I12, W... 46 6.7 1
(AC178058) Strongylocentrotus purpuratus clone R3-3056K01, W... 46 6.7 1
(AC178028) Strongylocentrotus purpuratus clone R3-3055I6, WO... 46 6.7 1
(AC177356) Strongylocentrotus purpuratus clone R3-52F01, WOR... 46 6.7 1
(AC177320) Strongylocentrotus purpuratus clone R3-46F7, WORK... 46 6.7 1
(AC177142) Strongylocentrotus purpuratus clone R3-4014N8, WO... 46 6.7 1
(AC177073) Strongylocentrotus purpuratus clone R3-4004K17, W... 46 6.7 1
(AC176837) Strongylocentrotus purpuratus clone R3-3120B11, W... 46 6.7 1
(AC176802) Strongylocentrotus purpuratus clone R3-3109A24, W... 46 6.7 1
(AC176363) Strongylocentrotus purpuratus clone R3-3048E21, W... 46 6.7 1
(AC176337) Strongylocentrotus purpuratus clone R3-3053N1, WO... 46 6.7 1
(AC176106) Strongylocentrotus purpuratus clone R3-24G8, WORK... 46 6.7 1
(AC174224) Strongylocentrotus purpuratus clone R3-53C20, WOR... 46 6.7 1
(AC174177) Strongylocentrotus purpuratus clone R3-3078A16, W... 46 6.7 1
(AC173633) Strongylocentrotus purpuratus clone R3-1016C23, W... 46 6.7 1
(AC173559) Strongylocentrotus purpuratus clone R3-3026M8, WO... 46 6.7 1
(AC173361) Strongylocentrotus purpuratus clone R3-1113J20, W... 46 6.7 1
(AC173350) Strongylocentrotus purpuratus clone R3-3047I2, WO... 46 6.7 1
(AC170072) Loxodonta africana clone VMRC15-272N22, WORKING D... 46 6.7 1
(AC168847) Strongylocentrotus purpuratus clone R3-1107B6, WO... 46 6.7 1
(AC168762) Strongylocentrotus purpuratus clone R3-3004F4, WO... 46 6.7 1
(AC168750) Strongylocentrotus purpuratus clone R3-3004P11, W... 46 6.7 1
(AC168695) Strongylocentrotus purpuratus clone R3-3014F22, W... 46 6.7 1
(AC168513) Strongylocentrotus purpuratus clone R3-3108L14, W... 46 6.7 1
(AC168102) Bos taurus clone CH240-202K14, WORKING DRAFT SEQU... 46 6.7 1
(AC166968) Mus musculus chromosome 18 clone RP24-335J23 map ... 46 6.7 1
(AC166766) Bos taurus clone CH240-185I11, WORKING DRAFT SEQU... 46 6.7 1
(AC166647) Mus musculus chromosome 3 clone RP23-5I9 map 3, *... 46 6.7 1
(AC017132) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 6.7 1
(AC015964) Homo sapiens chromosome 18 clone RP11-126A15 map ... 46 6.7 1
(AC007997) Homo sapiens chromosome 18 clone RP11-283D14 map ... 46 6.7 1
(BH539226) BOHFE47TF BOHF Brassica oleracea genomic clone BO... 46 6.7 1
(BH524976) BOHQK78TR BOHQ Brassica oleracea genomic clone BO... 46 6.7 1
(BH524199) BOHQN78TR BOHQ Brassica oleracea genomic clone BO... 46 6.7 1
(BH498315) BOGDF82TF BOGD Brassica oleracea genomic clone BO... 46 6.7 1
(AZ888061) RPCI-24-178A17.TV RPCI-24 Mus musculus genomic cl... 46 6.7 1
(AZ816440) 2M0085M08F Mouse 10kb plasmid UUGC1M library Mus ... 46 6.7 1
(AZ658292) 1M0535E06F Mouse 10kb plasmid UUGC1M library Mus ... 46 6.7 1
(AZ583039) 1M0376E14R Mouse 10kb plasmid UUGC1M library Mus ... 46 6.7 1
(FI041155) CHO_OF6465xf04f1.ab1 CHO_OF6 Nicotiana tabacum ge... 46 6.7 1
(FH364915) CHO_OF4478xk04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 6.7 1
(EK362566) 1095469198153 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.7 1
(EJ589791) 1092961042171 Global-Ocean-Sampling_GS-29-01-01-1... 46 6.7 1
(DH796359) Rattus norvegicus DNA, BAC clone: RNB1-390B13, 5'... 46 6.7 1
(DH722533) Rattus norvegicus DNA, BAC clone: RNB1-290F04, 3'... 46 6.7 1
(DH689455) Rattus norvegicus DNA, BAC clone: RNB1-245K11, 3'... 46 6.7 1
(DH580215) Rattus norvegicus DNA, BAC clone: RNB1-098N20, 5'... 46 6.7 1
(DH496923) Monosiga ovata DNA, fosmid clone: MOF-061P18, gen... 46 6.7 1
(DH491219) Monosiga ovata DNA, fosmid clone: MOF-051M18, gen... 46 6.7 1
(DH467206) Monosiga ovata DNA, fosmid clone: MOF-009O07, gen... 46 6.7 1
(DE948014) Macropus eugenii DNA, BAC clone: MEB1-144P17_F, 5... 46 6.7 1
(DE238617) Trifolium pratense DNA, clone:RCG36170. 46 6.7 1
(DE238587) Trifolium pratense DNA, clone:RCG36121. 46 6.7 1
(DE238170) Trifolium pratense DNA, clone:RCG34661. 46 6.7 1
(DE236563) Trifolium pratense DNA, clone:RCG32026. 46 6.7 1
(DE222207) Trifolium pratense DNA, clone:RCG13627. 46 6.7 1
(DE221789) Trifolium pratense DNA, clone:RCG13104. 46 6.7 1
(DE220094) Trifolium pratense DNA, clone:RCG11111. 46 6.7 1
(DE219693) Trifolium pratense DNA, clone:RCG10647. 46 6.7 1
(DE219146) Trifolium pratense DNA, clone:RCG10018. 46 6.7 1
(CW922530) EDCAT29TR A. castellanii, 6-8 kb library from tot... 46 6.7 1
(CR102080) Forward strand read from insert in 5'HPRT inserti... 46 6.7 1
(CE594238) tigr-gss-dog-17000366528924 Dog Library Canis lup... 46 6.7 1
(CC942876) BOIGD21TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 46 6.7 1
(BZ458302) BONAY09TR BO_1.6_2_KB_tot Brassica oleracea genom... 46 6.7 1
(BZ281375) CH230-344O18.TV CHORI-230 Segment 2 Rattus norveg... 46 6.7 1
(EG678210) RCRDR10TO Castor bean cDNA library from roots, 1.... 46 6.7 1
(DT729208) EST1163058 Aquilegia cDNA library Aquilegia formo... 46 6.7 1
(DT045332) Le_lv0_29g02_SP6 Little Skate Liver, Normalized L... 46 6.7 1
(DR927546) EST1119085 Aquilegia cDNA library Aquilegia formo... 46 6.7 1
(DR784032) Le_lv0_24b11_SP6 Little Skate Liver, Normalized L... 46 6.7 1
(DN764809) AGENCOURT_48434427 NIH_ZGC_6 Danio rerio cDNA clo... 46 6.7 1
(DC487280) Monosiga ovata cDNA, clone: MOC-054B13, 5'end. 46 6.7 1
(DC467267) Monosiga ovata cDNA, clone: MOC-025B12, 5'end. 46 6.7 1
(DB956088) Glycine max cDNA, clone: GMFL02-02-M13, 5'end. 46 6.7 1
(CX651451) COLD1_52_B04.g1_A029 Root cold Pinus taeda cDNA c... 46 6.7 1
(CO166910) FLD1_65_A02.g1_A029 Root flooded Pinus taeda cDNA... 46 6.7 1
(CO161061) FLD1_26_H12.b1_A029 Root flooded Pinus taeda cDNA... 46 6.7 1
(CB766712) AMGNNUC:SRPB2-00198-D3-A srpb2 (10220) Rattus nor... 46 6.7 1
(BP545732) Drosophila melanogaster cDNA clone:FGC032H09, emb... 46 6.7 1
(BJ369583) Dictyostelium discoideum cDNA clone:ddc51f06, 5' ... 46 6.7 1
(AA532216) CpEST.492 uniZAPCpIOWAsporoLib3 Cryptosporidium p... 46 6.7 1
(FK667298) 454GmaGlobSeed401930 Soybean Seeds Containing Glo... 46 6.7 1
(FK596627) 454GmaGlobSeed331259 Soybean Seeds Containing Glo... 46 6.7 1
(FF598810) Le_emcl1_07N12_M13Reverse Little Skate (Leucoraja... 46 6.7 1
(FE748517) CAYC5013.g1 CAYC Petrolisthes cinctipes heart, ne... 46 6.7 1
(FD713693) CAAA17880.fwd CAAA Petromyzon marinus Petromyzon ... 46 6.7 1
(EY361758) CAWZ7895.rev CAWZ Helobdella robusta Primary Late... 46 6.7 1
(EY332325) CAWY4783.fwd CAWY Helobdella robusta Subtracted E... 46 6.7 1
(EY117255) HA_MX1_84f04_SP6 Lobster Multiple Tissues, Normal... 46 6.7 1
(EA771729) Sequence 13 from patent US 7381808. 38 7.2 2
(DD080723) Method and nucleic acids for the differentiation ... 38 7.2 2

>(BJ407614) Dictyostelium discoideum cDNA clone:dds43i06, 3' end,
single read.
Length = 709

Score = 1342 bits (677), Expect(3) = 0.0
Identities = 677/677 (100%)
Strand = Plus / Minus


Query: 1741 tggcagagttttggaggccttgtcatcttgtggtggagcaatcattgcatcgttgttcaa 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tggcagagttttggaggccttgtcatcttgtggtggagcaatcattgcatcgttgttcaa 650


Query: 1801 ttgctacatttcgcctatccccatatttacagtgaccctgggcggcatcatatcgttgtt 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttgctacatttcgcctatccccatatttacagtgaccctgggcggcatcatatcgttgtt 590


Query: 1861 gcctggtttaggcttgacattggccgtagcggagatttcaactagaaatctggttagtgg 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gcctggtttaggcttgacattggccgtagcggagatttcaactagaaatctggttagtgg 530


Query: 1921 cacctcaagattggttggtgttttctcttgtttattgcaattaacttttggtattgcgtt 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cacctcaagattggttggtgttttctcttgtttattgcaattaacttttggtattgcgtt 470


Query: 1981 gggtacgaaattctcagaggtagtcatgccagtaagagacgaagttttacctgtaacttt 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gggtacgaaattctcagaggtagtcatgccagtaagagacgaagttttacctgtaacttt 410


Query: 2041 ccctgattgggtaatgtttattgtaattccgttcgctgccattacatttggtgttcaatt 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccctgattgggtaatgtttattgtaattccgttcgctgccattacatttggtgttcaatt 350


Query: 2101 aaaagttcattggagagaattttgggttatcatcatcgctagttacattggtgtaaccgt 2160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaagttcattggagagaattttgggttatcatcatcgctagttacattggtgtaaccgt 290


Query: 2161 tggtaattggggtagtaaatattttggtgatgttggtgctttctttggttcagctgcaat 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tggtaattggggtagtaaatattttggtgatgttggtgctttctttggttcagctgcaat 230


Query: 2221 ttgtgctctaggtaacctttactcaagattaacaaatatttctgcggtcgttccaattat 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ttgtgctctaggtaacctttactcaagattaacaaatatttctgcggtcgttccaattat 170


Query: 2281 ggcgggtattattttactggttcctggtagtatgggtgttaaaggtatcgtttcaatcag 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ggcgggtattattttactggttcctggtagtatgggtgttaaaggtatcgtttcaatcag 110


Query: 2341 tgatggtgatatttccggaggaattgatttcattggtggtatgtttatgactgctgcaag 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tgatggtgatatttccggaggaattgatttcattggtggtatgtttatgactgctgcaag 50


Query: 2401 tttaacaatgggtttat 2417
|||||||||||||||||
Sbjct: 49 tttaacaatgggtttat 33

Score = 32.2 bits (16), Expect(3) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 2437 tgctcctccaaaatcg 2452
||||||||||||||||
Sbjct: 16 tgctcctccaaaatcg 1

Score = 30.2 bits (15), Expect(3) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 2422 tgcaaatttaattat 2436
|||||||||||||||
Sbjct: 30 tgcaaatttaattat 16

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,543,349,960
Number of extensions: 149118161
Number of successful extensions: 12365165
Number of sequences better than 10.0: 532
Length of query: 2620
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2595
Effective length of database: 96,311,147,814
Effective search space: 249927428577330
Effective search space used: 249927428577330
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.17
Homology vs Protein
Query= Contig-U15762-1 (Contig-U15762-1Q) /CSM_Contig/Contig-U15762-1Q.Seq.d
(2620 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP000083_1132(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 120 3e-25
AE014299_306(AE014299|pid:none) Shewanella oneidensis MR-1, comp... 120 3e-25
CP000931_3992(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 119 6e-25
CP000563_4021(CP000563|pid:none) Shewanella baltica OS155, compl... 119 7e-25
CP000444_272(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 118 1e-24
CP000503_3778(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 117 3e-24
CP000606_230(CP000606|pid:none) Shewanella loihica PV-4, complet... 107 2e-21
CP000472_2031(CP000472|pid:none) Shewanella piezotolerans WP3, c... 106 5e-21
CP000821_4211(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 105 6e-21
AM743169_628(AM743169|pid:none) Stenotrophomonas maltophilia K27... 100 2e-19
CP000507_3341(CP000507|pid:none) Shewanella amazonensis SB2B, co... 100 3e-19
CP000388_1423(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 99 6e-19
AM920689_3757(AM920689|pid:none) Xanthomonas campestris pv. camp... 99 1e-18
AM039952_3694(AM039952|pid:none) Xanthomonas campestris pv. vesi... 98 1e-18
CP000020_1273(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 66 6e-09
CP000500_518(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 65 1e-08
FM178379_1537(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 65 1e-08
FM992694_176(FM992694|pid:none) Candida dubliniensis CD36 chromo... 64 3e-08
AE016819_308(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 64 4e-08
AE017349_226(AE017349|pid:none) Cryptococcus neoformans var. neo... 63 6e-08
AP007150_43(AP007150|pid:none) Aspergillus oryzae RIB40 genomic ... 62 1e-07
AY557884_1(AY557884|pid:none) Saccharomyces cerevisiae clone FLH... 61 2e-07
(P42946) RecName: Full=Pheromone-regulated membrane protein 10; ... 60 5e-07
AM920428_1542(AM920428|pid:none) Penicillium chrysogenum Wiscons... 58 2e-06
CR382135_142(CR382135|pid:none) Debaryomyces hansenii strain CBS... 57 4e-06
AP006852_180(AP006852|pid:none) Candida albicans genomic DNA, ch... 57 4e-06
CU928169_653(CU928169|pid:none) Kluyveromyces thermotolerans str... 56 6e-06
(O14267) RecName: Full=Uncharacterized protein C7D4.12c; &CU329... 56 8e-06
FN392319_35(FN392319|pid:none) Pichia pastoris GS115 chromosome ... 54 2e-05
AP007161_630(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 52 8e-05
CP000480_3706(CP000480|pid:none) Mycobacterium smegmatis str. MC... 52 1e-04
AP007171_148(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 52 1e-04
CP000099_2594(CP000099|pid:none) Methanosarcina barkeri str. Fus... 51 2e-04
BA000038_1066(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, ch... 48 0.002
AE016796_487(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 48 0.002
AM920427_1453(AM920427|pid:none) Penicillium chrysogenum Wiscons... 47 0.004
AE000666_744(AE000666|pid:none) Methanothermobacter thermautotro... 45 0.010
AE014186_270(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.039
CP001618_3458(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 43 0.051
CP000817_832(CP000817|pid:none) Lysinibacillus sphaericus C3-41,... 42 0.088
AL031745_55(AL031745|pid:none) Plasmodium falciparum DNA from MA... 42 0.11
AE017198_1655(AE017198|pid:none) Lactobacillus johnsonii NCC 533... 42 0.11
CP000283_2532(CP000283|pid:none) Rhodopseudomonas palustris BisB... 41 0.20
(Q02817) RecName: Full=Mucin-2; Short=MUC-2; AltName: F... 41 0.20
CP000413_1581(CP000413|pid:none) Lactobacillus gasseri ATCC 3332... 40 0.33
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740... 39 0.97
(O00910) RecName: Full=Signal transducer and activator of transc... 39 0.97
AC117076_28(AC117076|pid:none) Dictyostelium discoideum chromoso... 30 1.0
AC116305_123(AC116305|pid:none) Dictyostelium discoideum chromos... 39 1.3
A43932(A49963;A45106;B45106;A43932;B33532;A61257;PQ0328;)mucin 2... 39 1.3
(Q54DF2) RecName: Full=Probable serine/threonine-protein kinase ... 38 2.2
CP000250_2917(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 38 2.2
M22405_1(M22405|pid:none) Human intestinal mucin mRNA, partial c... 38 2.2
AC115588_5(AC115588|pid:none) Dictyostelium discoideum chromosom... 37 3.7
AE014187_81(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 37 4.8
FN357911_3(FN357911|pid:none) Schistosoma mansoni genome sequenc... 37 4.8
AC117081_1(AC117081|pid:none) Dictyostelium discoideum chromosom... 37 4.8
CP000510_2257(CP000510|pid:none) Psychromonas ingrahamii 37, com... 37 4.8
B46629(B46629) mucin 6, gastric (3-repeat clone) - human (fragme... 37 4.8
CR936503_312(CR936503|pid:none) Lactobacillus sakei strain 23K c... 37 4.8
AE014188_88(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 29 5.7
AC117072_19(AC117072|pid:none) Dictyostelium discoideum chromoso... 33 5.9
AE014187_372(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 36 6.3
(Q54US7) RecName: Full=GATA zinc finger domain-containing protei... 33 8.0
CP000932_117(CP000932|pid:none) Campylobacter lari RM2100, compl... 36 8.2
AL844509_254(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 36 8.2
AC116986_10(AC116986|pid:none) Dictyostelium discoideum chromoso... 36 8.2
AY260053_1(AY260053|pid:none) Drosophila simulans Hmr (Hmr) gene... 36 8.2

>CP000083_1132(CP000083|pid:none) Colwellia psychrerythraea 34H,
complete genome.
Length = 408

Score = 120 bits (301), Expect = 3e-25
Identities = 74/292 (25%), Positives = 141/292 (48%), Gaps = 1/292 (0%)
Frame = +2

Query: 1439 YTHFLRINSTDYNMERMVRLERLADKVIYGEVSCVEALEKLRKILAKKPLYNIYLTTFSY 1618
Y H +R++ D ++ + R++ L D++I G+ + EA+E+L ++ K Y L+ ++
Sbjct: 68 YNHLVRVSPGDIDLGSLARIDELVDELIDGQRTLEEAIERLAEVKNKPAPYGTLLSFLAF 127

Query: 1619 IMSSFTIAFFFDVGWVEVGACSIIGFYXXXXXXXXXXXXXXGRVLEALSSCGGAIIASLF 1798
SS A W +V +I+G+ +LE +++ +++AS
Sbjct: 128 GASSGAFAMLMHTSWHDVFWSTILGWVTFAFVLWSERSRRMSDLLEPMAALTASLLASAI 187

Query: 1799 NCYISPIPIFTVXXXXXXXXXXXXXXXXAVAEISTRNLVSGTSRLVGVFSCLLQLTFGIA 1978
+ I I V ++E++ R+L+SGT+R++ L +L FG
Sbjct: 188 SMIDPSINIPMVILSSIIVFIPGLSLTVGLSELAARHLMSGTARIMDSIMVLFKLYFGAV 247

Query: 1979 LGTKFSEVVMPVRDEVLPVTFPDWVMFIVIPFAAITFGVQLKVHWREFWVIIIASYIGVT 2158
LG ++ + P T P W ++ + +++ + KV ++ +IA YI
Sbjct: 248 LGMALGNLMWGTAIFLPPETMPVWTSWLAVTTLSVSLVILFKVRLKDAPWGMIAGYIAFG 307

Query: 2159 VGNWGSKYFG-DVGAFFGSAAICALGNLYSRLTNISAVVPIMAGIILLVPGS 2311
V W ++Y G +GAF G+ A+ NL+SRL N+ + + + G+++LVPGS
Sbjct: 308 VSIWATEYLGVALGAFVGAFALGLYSNLFSRLMNLPSSIVRLLGLVVLVPGS 359

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,364,252,558
Number of extensions: 62457844
Number of successful extensions: 185820
Number of sequences better than 10.0: 69
Number of HSP's gapped: 184753
Number of HSP's successfully gapped: 74
Length of query: 873
Length of database: 1,051,180,864
Length adjustment: 138
Effective length of query: 735
Effective length of database: 604,535,722
Effective search space: 444333755670
Effective search space used: 444333755670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.48 gvh: 0.19 alm: 0.25 top: 0.73 tms: 0.53 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

64.0 %: plasma membrane
16.0 %: endoplasmic reticulum
12.0 %: vacuolar
8.0 %: nuclear

>> prediction for Contig-U15762-1 is pla

VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 6
AF (FL, S) 0
SL (DIR, L) 4
SS (DIR, S) 0
SH (FL, L) 7
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0