Contig-U15759-1
Contig ID Contig-U15759-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15759-1 (Contig-U15759-1Q) /CSM_Contig/Contig-U15759-1Q.Seq.d
CAATAATAATAATAATAATAATAATAATGGTAATAATAATAATAATAGTA
ATTTTTTAACTAGACAAGATAGTTCAACACAAAAAGAATGGGATGAACAA
AATGTAACAGAAGCATTTGGTTTTTGGAAACAAAAGGCAGTACAATTACA
AAAAGAAACAGAGAGATATAATGCAAGACGTAATGCAAGACAAACTATTG
ATTTAACAAATATTTTAAGAAAGAGTACAAGTAGTGATCTATTGATTAAA
CCACCTGTTGAATCACCACCATTAACTCCTGTTGGACAAGATGATGAAGG
AGAACAACAACAACAACAACAACAACAAAAACAATCTTCACCATCTACAC
CATCAAATGATACTGATACTGAGACTACAGCAGCAGCAGTAACAACAACC
ACAACTACAACAACCACCACCACTACCTCAACTACAACCACTACAACAGA
GACTGTTTTACAGGCTAATCAATTAGAGATTAAATATGGTGGTGAAACAA
TTGCAGTAGTCGATGACTCTGGCACAACACCAAGAGACTATAGAAGATCT
AGAAGTATCAGTTGTGAGATTATACCAAAGATAAATGGTGTAATTACAAC
CTCTCCACAACGAGTAACAACAACAACAACAACTACCACACCATCAACAG
GTGGTGTTGTCGTTGCTGATGAAGAATCAGACTCTTCAGAGGAAGAATCA
GATTCATCAGAGGAAGAATCAGATGAATATACCGATGAAGAATCAGAGAC
TGAATTACAAGTAGTTTCCAATGCCACACCAAGAAGATCAGATGATTTTA
CACCAACCATAGTTGAATCACCACCATTAACATCAGTTAATAGTAATGAT
AATACTTCTTCTGGTACCGTAGTTGCTCCAATTGACTTGAATAGCAGTAC
TGGTGGTAATACAGGTTCACAACAACCACCACAACCATCATCACAACAAC
AAAAACCAGATCAAGCATCTGAAAATACCGCTGTTGCTGCCTCTTCAATT
AGTGCCACAACAAATGTTACTTCAGCTGCTTCCACAACAACCGTTGCTCC
AGATTCCATCATCAACACTAAAGATGTTACTGTTGTAAGCTCTACATTAA
CCACTACAACTAGTGCCACTTCATCTACTACCAGTGCTACAACTCAATCA
ATACCAGCTCCACCATCACCATCACAACAACGTGCTGCTCAATCAATTTC
AACCTCTTCAGTAACACCTGCAGCAATTACAAAACCAACTAAAGATGCCA
AAGATAAGAAAGATCCAGCAAAGAAATCAATTGGTGCCACTTTAACAAGA
ACAGTAACAAAAACATTCATTAGAGATTCAAAAGAGAATAATAAAGTTCC
AACTGGAACTTCACCACCTGTTTCATCATCAACTTCAATTTCATCCTCAA
CTGGTATTAAAAAAGATAAAGTAAAGCTTTCAAAAGAAGAGAAAGATCGT
ATTAAAAAAGAGAAATCTGCAAAGAAAAAGAAAGAAAAAGATGAAAAGAA
ACAACAAAAAAACAAACAAAAAAGCATTAACTAAAAATAATTCTTCAACT
GATGTTAAAAAAGGTTTTGTTTCACCACAACAACAACAAATTTTAGATTC
ACCATATAGAATTTATGGTGTTAGATTAACACAATTAGTATTATGCAAAT
GATGGTGATTTACCAGCAATTTTAACACAAACTATAACAGTTTTATCAAA
TTCAAATAAATTAGATGTTAATTCAGTATTTGTAGGAGCAGAGAATGAAC
CAGCAGTAAGAGAAATTAGAAAGAGGAGTGATCTTGAAAGAATTGATTTT
TCAATTATTGGTGATCCAAGAGTGGTAGCAGGTTTGTTGATATTATTTTT
CGCAGAGTTACCACAACCATTATTCAATAGTAAATTCTTTGGAGATTTAG
TGGAAATCAATGATATCACCAATCCCCAAGTTAAGTTGAATGATTTAAAA
CAATTAATCAATTCTTTATCACAGCTACGTCGTTCATTACTTCAAATTTT
GGTAACATTTTTCACCTCAAAATATATCAATGGCAATTCTGTTACCACTA
GAGCCATTGCAATTCAATCGATCGCTCAATCATTTGGTCCACAATTTTTC
AGAGGTACATCAAGTTCCGATAGTGACATTCAAGTTGGTATTGAAACCCT
CAAATTAATCATTGATAACTATGTTTTTCTATTTGAAAAAACCAATGAAC
CCGATGTAAAATACAAGAATATCGATGGAAAGATGATAATCTCTGAGGGT
TCAATCGACAAGTTGATTGATAAAGCCACCGATCAATATTATCCATACAA
TGAGAAATACTTTTCTCTCACATTCTTTATCACTCATCTCTTCTTTATTC
AACCACACGAATTGGCTGATAAACTTATCACACTCTATCGTGAGAATTTA
GATACTTTAGAGACTAAAAAGAAATGGAAGAAACATCGTCGTTCAAAGAA
AGCCAGTTTCATTAATGAGGCTGTTAAACTTTGGGTCGATTATTGTTACA
AAGAAATGCGTGAGGATAAAGAACTCTCCAAAAAGATATTAAAAGGTTTC
CCACATTTAGAGGCTCAACTTGCAAGTCGTCTCTCTCATAGAACCACAAT
CAATGATTTCCTTAAATTACCAAAACGTGTTCATTCTCGTACTCGTTCCG
CTTCATTCTCTGATACCTTACTTTCAACAGGTGGCATTGGTAGTACAAGT
GGCGGTATTGGTGGTGGCGTCAACAATTGTCTCCTTAGTGCCATGGAAAT
CGCTGAACAATGTACTTTGGTCGATTATGATCTCTTCACCAATGTTA---
-------TAACGATGGTTCAATGGTTAATGTTGAAAAGTTACGGTACAAT
CTTTGGTATCGTTGTTGAGATTCAACGTTTACAACAACAAAGAAATTACA
CAATGAAACCAACCAAACTTTTCATTCAACTTCAAGATATAAACACTGTA
TCAATGGATGAGTTGGCTGATCTCTCTTTGAAATGTGAACCACCAGTTAG
TAAGGCAAAGAAATACAATGCTCCTGCTGATATAGTCGATGAAGATTGGA
GATTAAAAATCACAAAAACTTTCAATAAACCATTGGCAACCACTTCAGTC
GGCATCGATTTACCACGTTTAGCCTCTTCTTTCACTTTTAATACCACTGG
TCATAAAACAACTCCAGAAGAGAAATCAGCATATGGTAATAAAATTCAAG
ATATCTTTCATGTTTTGGTATCATTGGCTCAAATTGAATCATCAGAATTG
GAGACTGATGTTCGTGAGAAATTCACAACCTACATACCAATGTCAACAGA
TCCAGATTCAGATTTCAAGAGAGAGTTACTTAAATTTTTGGATGAGGTTT
GTCATGCTGACAATAGTAAATTGGTTAGAGTTTTGAAATGTTGTAATCAA
GCAATCATAGCTCCAGTCATAATTGAAATCACTCTCAATATAGCTAAAGG
TGTACCATTTATGGATGCTGGTGGTTGGAGAATTTTAATTTCAAATATAA
ATAATAGTAATAATAGTGTAATATTAGATAAAATTGAGAAATAAACGAAG
ATTCATCAAATGTAGAAAAAGAAAAATTACCATCATCACAAGAACAACAA
GAACAACAAGAACAAAAACAACAAGAACAACAACAACAACAACAGGAACC
ACAACCATTATTTATTAGACATTATAAAAAACAAAGATCAAGATCCGCTC
AATCTAAAGACTTTTTCGAATTTGAATGGTTCATTCAATTAAATTTAGAT
GCAGATTGTAAAAATATACTTTCATTCGATTTAAAGATTAGTAATTTGGT
TTTCTCCACTGATACAAGTCCAAATATTCGTGATCAACTTTTAGAATCAT
TTAAATCTTATTTGGTTAGTCAAGAATGTGTTCAATATATAAATTTCAAT
GAAAATAAACAACCTGTTGCTGCCCCTGTCACTCCTGCTACTACCATTGT
AACTACAAAAGAAGAATCAACTACTGTAACTAGTAGTACTACAACTGTTG
TTCAAGAATCAGTTCCTTCAACAAA

Gap gap included
Contig length 4015
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4927023
End point 4923008
Strand (PLUS/MINUS) MINUS
Number of clones 26
Number of EST 37
Link to clone list U15759
List of clone(s)

est1=SHC565Z,-166,452
est2=SFJ832F,54,673
est3=SLI818F,78,388
est4=CHQ731F,181,869
est5=VFF146E,216,1500
est6=VFI105F,278,781
est7=SFK785E,318,1501
est8=VFI105Z,784,1499
est9=CHQ586Z,810,1303
est10=SFJ832Z,824,1463
est11=VHL790Z,875,1302
est12=CHH117F,961,1562
est13=SLI818Z,992,1475
est14=SHE870F,1002,1676
est15=AHJ210F,1314,1995
est16=AHF552F,1315,1859
est17=SHL210F,1335,2006
est18=AHI807F,1336,2013
est19=SHB391Z,1366,1801
est20=AHQ739F,1415,2017
est21=AHF869F,1592,2212
est22=SHD483F,1596,2276
est23=AHP172F,1620,2071
est24=AHK889F,1731,2292
est25=CHO538F,1733,2350
est26=AHQ402F,1876,2495
est27=SFB236F,1929,2423
est28=AHF327F,2091,2726
est29=AHB861F,2200,2797
est30=AHF552Z,2798,3545
est31=AHJ210Z,2802,3549
est32=SFB236Z,2813,3545
est33=AHF869Z,2822,3580
est34=SHE870Z,2829,3550
est35=AHQ739Z,2965,3545
est36=CHH117Z,3268,4015
est37=AHI807Z,3660,3920
Translated Amino Acid sequence
q********w*******ffn*tr*fntkrmg*tkcnrsiwfletkgstitkrnrei*ckt
*cktny*fnkyfkkeyk**sid*ttc*ittinscwtr**rrttttttttktiftiytik*
y*y*dyssssnnnhnynnhhhylnynhynrdcftg*sird*iww*nncssr*lwhntkrl
*ki*kyql*dytkdkwcnynlsttsnnnnnnyhtinrwccrc**rirlfrgrirfirgri
r*iyr*rird*itssfqchtkkir*fytnhs*ittinis*****yffwyrscsn*le*qy
ww*yrfttttttiitttktrssi*kyrccclfn*chnkcyfscfhnnrcsrfhhqh*rcy
ccklyinhyn*chfiyyqcynsintsstititttccsinfnlfsntcsnyktn*rcqr*e
rsskeinwchfnknsnknih*rfkre**ssnwnfttcfiinfnfilnwy*kr*skafkrr
ersy*kreickekerkr*kettkkqtkkh*lkiilqlmlkkvlfhhnnnkf*ihhiefmv
ld*hn*YYANDGDLPAILTQTITVLSNSNKLDVNSVFVGAENEPAVREIRKRSDLERIDF
SIIGDPRVVAGLLILFFAELPQPLFNSKFFGDLVEINDITNPQVKLNDLKQLINSLSQLR
RSLLQILVTFFTSKYINGNSVTTRAIAIQSIAQSFGPQFFRGTSSSDSDIQVGIETLKLI
IDNYVFLFEKTNEPDVKYKNIDGKMIISEGSIDKLIDKATDQYYPYNEKYFSLTFFITHL
FFIQPHELADKLITLYRENLDTLETKKKWKKHRRSKKASFINEAVKLWVDYCYKEMREDK
ELSKKILKGFPHLEAQLASRLSHRTTINDFLKLPKRVHSRTRSASFSDTLLSTGGIGSTS
GGIGGGVNNCLLSAMEIAEQCTLVDYDLFTNV---

---TMVQWLMLKSYGTIFGIVVEIQRLQQQRNYTMKPTKLFIQLQDINTVSMDELADLSL
KCEPPVSKAKKYNAPADIVDEDWRLKITKTFNKPLATTSVGIDLPRLASSFTFNTTGHKT
TPEEKSAYGNKIQDIFHVLVSLAQIESSELETDVREKFTTYIPMSTDPDSDFKRELLKFL
DEVCHADNSKLVRVLKCCNQAIIAPVIIEITLNIAKGVPFMDAGGWRILISNINNSNNSV
ILDKIEK*tkihqm*kkknyhhhknnknnknknnknnnnnnrnhnhylldiiknkdqdpl
nlktfsnlngsfn*i*mqivkiyfhsi*rlviwfspliqvqifvinf*nhlnliwlvknv
fni*ismkinnlllplsllllpl*lqkknqll*lvvlqllfknqflqq


Translated Amino Acid sequence (All Frames)
Frame A:
q********w*******ffn*tr*fntkrmg*tkcnrsiwfletkgstitkrnrei*ckt
*cktny*fnkyfkkeyk**sid*ttc*ittinscwtr**rrttttttttktiftiytik*
y*y*dyssssnnnhnynnhhhylnynhynrdcftg*sird*iww*nncssr*lwhntkrl
*ki*kyql*dytkdkwcnynlsttsnnnnnnyhtinrwccrc**rirlfrgrirfirgri
r*iyr*rird*itssfqchtkkir*fytnhs*ittinis*****yffwyrscsn*le*qy
ww*yrfttttttiitttktrssi*kyrccclfn*chnkcyfscfhnnrcsrfhhqh*rcy
ccklyinhyn*chfiyyqcynsintsstititttccsinfnlfsntcsnyktn*rcqr*e
rsskeinwchfnknsnknih*rfkre**ssnwnfttcfiinfnfilnwy*kr*skafkrr
ersy*kreickekerkr*kettkkqtkkh*lkiilqlmlkkvlfhhnnnkf*ihhiefmv
ld*hn*YYANDGDLPAILTQTITVLSNSNKLDVNSVFVGAENEPAVREIRKRSDLERIDF
SIIGDPRVVAGLLILFFAELPQPLFNSKFFGDLVEINDITNPQVKLNDLKQLINSLSQLR
RSLLQILVTFFTSKYINGNSVTTRAIAIQSIAQSFGPQFFRGTSSSDSDIQVGIETLKLI
IDNYVFLFEKTNEPDVKYKNIDGKMIISEGSIDKLIDKATDQYYPYNEKYFSLTFFITHL
FFIQPHELADKLITLYRENLDTLETKKKWKKHRRSKKASFINEAVKLWVDYCYKEMREDK
ELSKKILKGFPHLEAQLASRLSHRTTINDFLKLPKRVHSRTRSASFSDTLLSTGGIGSTS
GGIGGGVNNCLLSAMEIAEQCTLVDYDLFTNV---

---*rwfng*c*kvtvqslvsllrfnvynnkeitq*nqpnfsfnfki*tlyqwmswlisl
*nvnhqlvrqrntmllli*smkigd*ksqklsinhwqplqsasiyhv*pllslliplvik
qlqkrnqhmvikfkisfmfwyhwlklnhqnwrlmfvrnsqptyqcqqiqiqisresylnf
wmrfvmltivnwlef*nvvikqs*lqs*lkslsi*lkvyhlwmlvvgef*fqi*iiviiv
*y*iklrnkrrfikcrkrkitiitrttrttrtkttrttttttgtttiiy*tl*ktkikir
si*rlfri*mvhsikfrcrl*kytfirfkd**fgflh*ykskys*stfrii*ilfg*srm
csiykfq*k*ttcccpchscyyhcnykrrinycn**yynccsrissfnk

Frame B:
nnnnnnnnngnnnnnsnfltrqdsstqkewdeqnvteafgfwkqkavqlqketerynarr
narqtidltnilrkstssdllikppvesppltpvgqddegeqqqqqqqqkqsspstpsnd
tdtettaaavttttttttttttsttttttetvlqanqleikyggetiavvddsgttprdy
rrsrsisceiipkingvittspqrvttttttttpstggvvvadeesdsseeesdsseees
deytdeesetelqvvsnatprrsddftptivesppltsvnsndntssgtvvapidlnsst
ggntgsqqppqpssqqqkpdqasentavaassisattnvtsaastttvapdsiintkdvt
vvsstlttttsatssttsattqsipappspsqqraaqsistssvtpaaitkptkdakdkk
dpakksigatltrtvtktfirdskennkvptgtsppvssstsissstgikkdkvklskee
kdrikkeksakkkkekdekkqqknkqksin*k*ffn*c*krfcftttttnfrfti*nlwc
*intisimqmmviyqqf*hkl*qfyqiqin*mliqyl*eqrmnqq*eklergvilkelif
qllviqew*qvc*yyfsqsyhnhysivnslei*wksmispipkls*mi*nn*silyhsyv
vhyfkfw*hfspqnismaillpleplqfnrslnhlvhnfsevhqvpivtfklvlkpsn*s
litmffylkkpmnpm*ntrismer**slrvqsts*likppiniihtmrntflshslslis
slfnhtnwlinlshsivri*il*rlkrngrnivvqrkpvslmrllnfgsiivtkkcvrik
nspkry*kvshi*rlnlqvvsliepqsmislnyqnvfilvlvplhslipyfqqvalvvqv
avlvvastivslvpwkslnnvlwsimisspml---

---ndgsmvnveklrynlwyrc*dstftttkklhnetnqtfhstsrykhcing*vg*slf
em*tts**gkeiqcsc*ysr*rleiknhknfq*tignhfsrhrfttfslffhf*yhws*n
nsrreisiw**nsrylscfgiigsn*iirigd*cs*eihnlhtnvnrsrfrfqervt*if
g*glsc*q**ig*sfeml*ssnhssshn*nhsqys*rctiygcwwlenfnfkyk*****c
nir*n*einedssnvekeklpssqeqqeqqeqkqqeqqqqqqepqplfirhykkqrsrsa
qskdffefewfiqlnldadcknilsfdlkisnlvfstdtspnirdqllesfksylvsqec
vqyinfnenkqpvaapvtpattivttkeesttvtsstttvvqesvpst

Frame C:
iiiiiiiimviiiiivif*ldkivqhkkngmnkm*qkhlvfgnkrqynykkkqrdimqdv
mqdklli*qif*ervqvviy*lnhllnhhh*llldkmmkennnnnnnnknnlhhlhhqmi
lilrlqqqq*qqpqlqqppplpqlqplqqrlfyrlin*rlnmvvkqlq*smtlaqhqeti
edlevsvvrlyqr*mv*lqplhne*qqqqqlphhqqvvlsllmknqtlqrknqihqrknq
mnipmknqrlnyk*fpmphqedqmilhqp*lnhhh*hqlivmiilllvp*llqlt*iavl
vviqvhnnhhnhhhnnknqikhlkiplllplqlvpqqmllqllpqqpllqipsstlkmll
l*alh*plqlvplhllpvlqlnqyqlhhhhhnnvllnqfqplq*hlqqlqnqlkmpkirk
iqqrnqlvpl*qeq*qkhsleiqkriikfqlelhhlfhhqlqfhpqlvlkkik*sfqkkr
kivlkkrnlqrkrkkkmkrnnkktnkkaltknnsstdvkkgfvspqqqqildspyriygv
rltqlvlck*w*ftsnfntnynsfikfk*irc*fsicrsre*tsskrn*kee*s*kn*ff
nyw*sksgsrfvdiifrrvtttiiq**ilwrfsgnq*yhqsps*ve*fktinqffitats
fitsnfgnifhlkiyqwqfcyh*shcnsidrsiiwstifqryikfr**hsswy*npqinh
**lcfsi*knq*trckiqeyrwkddnl*gfnrqvd**shrsilsiq*eilfshilyhssl
lysttrig**tyhtls*efryfrd*kemeetssfkesqfh**gc*tlgrlllqrna*g*r
tlqkdikrfptfrgstckssls*nhnq*fp*itktcsfsysfrfil*yltfnrwhw*ykw
rywwwrqqlsp*chgnr*tmyfgrl*slhqc---

---TMVQWLMLKSYGTIFGIVVEIQRLQQQRNYTMKPTKLFIQLQDINTVSMDELADLSL
KCEPPVSKAKKYNAPADIVDEDWRLKITKTFNKPLATTSVGIDLPRLASSFTFNTTGHKT
TPEEKSAYGNKIQDIFHVLVSLAQIESSELETDVREKFTTYIPMSTDPDSDFKRELLKFL
DEVCHADNSKLVRVLKCCNQAIIAPVIIEITLNIAKGVPFMDAGGWRILISNINNSNNSV
ILDKIEK*tkihqm*kkknyhhhknnknnknknnknnnnnnrnhnhylldiiknkdqdpl
nlktfsnlngsfn*i*mqivkiyfhsi*rlviwfspliqvqifvinf*nhlnliwlvknv
fni*ismkinnlllplsllllpl*lqkknqll*lvvlqllfknqflqq

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15759-1 (Contig-U15759-1Q)
/CSM_Contig/Contig-U15759-1Q.Seq.d
(4025 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15759-1 (Contig-U15759-1Q) /CSM_Contig/Conti... 4032 0.0
Contig-U11763-1 (Contig-U11763-1Q) /CSM_Contig/Conti... 50 3e-05
Contig-U12107-1 (Contig-U12107-1Q) /CSM_Contig/Conti... 48 1e-04
Contig-U04133-1 (Contig-U04133-1Q) /CSM_Contig/Conti... 46 4e-04
Contig-U15439-1 (Contig-U15439-1Q) /CSM_Contig/Conti... 44 0.002
Contig-U12615-1 (Contig-U12615-1Q) /CSM_Contig/Conti... 44 0.002
Contig-U09782-1 (Contig-U09782-1Q) /CSM_Contig/Conti... 44 0.002
Contig-U01123-1 (Contig-U01123-1Q) /CSM_Contig/Conti... 44 0.002
Contig-U15711-1 (Contig-U15711-1Q) /CSM_Contig/Conti... 42 0.007
Contig-U08738-1 (Contig-U08738-1Q) /CSM_Contig/Conti... 42 0.007

>Contig-U15759-1 (Contig-U15759-1Q) /CSM_Contig/Contig-U15759-1Q.Seq.d
Length = 4025

Score = 4032 bits (2034), Expect = 0.0
Identities = 2064/2064 (100%)
Strand = Plus / Plus


Query: 1524 gcattaactaaaaataattcttcaactgatgttaaaaaaggttttgtttcaccacaacaa 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 gcattaactaaaaataattcttcaactgatgttaaaaaaggttttgtttcaccacaacaa 1583


Query: 1584 caacaaattttagattcaccatatagaatttatggtgttagattaacacaattagtatta 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 caacaaattttagattcaccatatagaatttatggtgttagattaacacaattagtatta 1643


Query: 1644 tgcaaatgatggtgatttaccagcaattttaacacaaactataacagttttatcaaattc 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 tgcaaatgatggtgatttaccagcaattttaacacaaactataacagttttatcaaattc 1703


Query: 1704 aaataaattagatgttaattcagtatttgtaggagcagagaatgaaccagcagtaagaga 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 aaataaattagatgttaattcagtatttgtaggagcagagaatgaaccagcagtaagaga 1763


Query: 1764 aattagaaagaggagtgatcttgaaagaattgatttttcaattattggtgatccaagagt 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 aattagaaagaggagtgatcttgaaagaattgatttttcaattattggtgatccaagagt 1823


Query: 1824 ggtagcaggtttgttgatattatttttcgcagagttaccacaaccattattcaatagtaa 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 ggtagcaggtttgttgatattatttttcgcagagttaccacaaccattattcaatagtaa 1883


Query: 1884 attctttggagatttagtggaaatcaatgatatcaccaatccccaagttaagttgaatga 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 attctttggagatttagtggaaatcaatgatatcaccaatccccaagttaagttgaatga 1943


Query: 1944 tttaaaacaattaatcaattctttatcacagctacgtcgttcattacttcaaattttggt 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 tttaaaacaattaatcaattctttatcacagctacgtcgttcattacttcaaattttggt 2003


Query: 2004 aacatttttcacctcaaaatatatcaatggcaattctgttaccactagagccattgcaat 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 aacatttttcacctcaaaatatatcaatggcaattctgttaccactagagccattgcaat 2063


Query: 2064 tcaatcgatcgctcaatcatttggtccacaatttttcagaggtacatcaagttccgatag 2123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 tcaatcgatcgctcaatcatttggtccacaatttttcagaggtacatcaagttccgatag 2123


Query: 2124 tgacattcaagttggtattgaaaccctcaaattaatcattgataactatgtttttctatt 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 tgacattcaagttggtattgaaaccctcaaattaatcattgataactatgtttttctatt 2183


Query: 2184 tgaaaaaaccaatgaacccgatgtaaaatacaagaatatcgatggaaagatgataatctc 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 tgaaaaaaccaatgaacccgatgtaaaatacaagaatatcgatggaaagatgataatctc 2243


Query: 2244 tgagggttcaatcgacaagttgattgataaagccaccgatcaatattatccatacaatga 2303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 tgagggttcaatcgacaagttgattgataaagccaccgatcaatattatccatacaatga 2303


Query: 2304 gaaatacttttctctcacattctttatcactcatctcttctttattcaaccacacgaatt 2363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 gaaatacttttctctcacattctttatcactcatctcttctttattcaaccacacgaatt 2363


Query: 2364 ggctgataaacttatcacactctatcgtgagaatttagatactttagagactaaaaagaa 2423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 ggctgataaacttatcacactctatcgtgagaatttagatactttagagactaaaaagaa 2423


Query: 2424 atggaagaaacatcgtcgttcaaagaaagccagtttcattaatgaggctgttaaactttg 2483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2424 atggaagaaacatcgtcgttcaaagaaagccagtttcattaatgaggctgttaaactttg 2483


Query: 2484 ggtcgattattgttacaaagaaatgcgtgaggataaagaactctccaaaaagatattaaa 2543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 ggtcgattattgttacaaagaaatgcgtgaggataaagaactctccaaaaagatattaaa 2543


Query: 2544 aggtttcccacatttagaggctcaacttgcaagtcgtctctctcatagaaccacaatcaa 2603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2544 aggtttcccacatttagaggctcaacttgcaagtcgtctctctcatagaaccacaatcaa 2603


Query: 2604 tgatttccttaaattaccaaaacgtgttcattctcgtactcgttccgcttcattctctga 2663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2604 tgatttccttaaattaccaaaacgtgttcattctcgtactcgttccgcttcattctctga 2663


Query: 2664 taccttactttcaacaggtggcattggtagtacaagtggcggtattggtggtggcgtcaa 2723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 taccttactttcaacaggtggcattggtagtacaagtggcggtattggtggtggcgtcaa 2723


Query: 2724 caattgtctccttagtgccatggaaatcgctgaacaatgtactttggtcgattatgatct 2783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 caattgtctccttagtgccatggaaatcgctgaacaatgtactttggtcgattatgatct 2783


Query: 2784 cttcaccaatgttannnnnnnnnntaacgatggttcaatggttaatgttgaaaagttacg 2843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2784 cttcaccaatgttannnnnnnnnntaacgatggttcaatggttaatgttgaaaagttacg 2843


Query: 2844 gtacaatctttggtatcgttgttgagattcaacgtttacaacaacaaagaaattacacaa 2903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2844 gtacaatctttggtatcgttgttgagattcaacgtttacaacaacaaagaaattacacaa 2903


Query: 2904 tgaaaccaaccaaacttttcattcaacttcaagatataaacactgtatcaatggatgagt 2963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 tgaaaccaaccaaacttttcattcaacttcaagatataaacactgtatcaatggatgagt 2963


Query: 2964 tggctgatctctctttgaaatgtgaaccaccagttagtaaggcaaagaaatacaatgctc 3023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 tggctgatctctctttgaaatgtgaaccaccagttagtaaggcaaagaaatacaatgctc 3023


Query: 3024 ctgctgatatagtcgatgaagattggagattaaaaatcacaaaaactttcaataaaccat 3083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 ctgctgatatagtcgatgaagattggagattaaaaatcacaaaaactttcaataaaccat 3083


Query: 3084 tggcaaccacttcagtcggcatcgatttaccacgtttagcctcttctttcacttttaata 3143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 tggcaaccacttcagtcggcatcgatttaccacgtttagcctcttctttcacttttaata 3143


Query: 3144 ccactggtcataaaacaactccagaagagaaatcagcatatggtaataaaattcaagata 3203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 ccactggtcataaaacaactccagaagagaaatcagcatatggtaataaaattcaagata 3203


Query: 3204 tctttcatgttttggtatcattggctcaaattgaatcatcagaattggagactgatgttc 3263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 tctttcatgttttggtatcattggctcaaattgaatcatcagaattggagactgatgttc 3263


Query: 3264 gtgagaaattcacaacctacataccaatgtcaacagatccagattcagatttcaagagag 3323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 gtgagaaattcacaacctacataccaatgtcaacagatccagattcagatttcaagagag 3323


Query: 3324 agttacttaaatttttggatgaggtttgtcatgctgacaatagtaaattggttagagttt 3383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 agttacttaaatttttggatgaggtttgtcatgctgacaatagtaaattggttagagttt 3383


Query: 3384 tgaaatgttgtaatcaagcaatcatagctccagtcataattgaaatcactctcaatatag 3443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 tgaaatgttgtaatcaagcaatcatagctccagtcataattgaaatcactctcaatatag 3443


Query: 3444 ctaaaggtgtaccatttatggatgctggtggttggagaattttaatttcaaatataaata 3503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 ctaaaggtgtaccatttatggatgctggtggttggagaattttaatttcaaatataaata 3503


Query: 3504 atagtaataatagtgtaatattagataaaattgagaaataaacgaagattcatcaaatgt 3563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 atagtaataatagtgtaatattagataaaattgagaaataaacgaagattcatcaaatgt 3563


Query: 3564 agaaaaagaaaaattaccatcatc 3587
||||||||||||||||||||||||
Sbjct: 3564 agaaaaagaaaaattaccatcatc 3587


Score = 1530 bits (772), Expect = 0.0
Identities = 772/772 (100%)
Strand = Plus / Plus


Query: 634 taccacaccatcaacaggtggtgttgtcgttgctgatgaagaatcagactcttcagagga 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 taccacaccatcaacaggtggtgttgtcgttgctgatgaagaatcagactcttcagagga 693


Query: 694 agaatcagattcatcagaggaagaatcagatgaatataccgatgaagaatcagagactga 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agaatcagattcatcagaggaagaatcagatgaatataccgatgaagaatcagagactga 753


Query: 754 attacaagtagtttccaatgccacaccaagaagatcagatgattttacaccaaccatagt 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 attacaagtagtttccaatgccacaccaagaagatcagatgattttacaccaaccatagt 813


Query: 814 tgaatcaccaccattaacatcagttaatagtaatgataatacttcttctggtaccgtagt 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tgaatcaccaccattaacatcagttaatagtaatgataatacttcttctggtaccgtagt 873


Query: 874 tgctccaattgacttgaatagcagtactggtggtaatacaggttcacaacaaccaccaca 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tgctccaattgacttgaatagcagtactggtggtaatacaggttcacaacaaccaccaca 933


Query: 934 accatcatcacaacaacaaaaaccagatcaagcatctgaaaataccgctgttgctgcctc 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 accatcatcacaacaacaaaaaccagatcaagcatctgaaaataccgctgttgctgcctc 993


Query: 994 ttcaattagtgccacaacaaatgttacttcagctgcttccacaacaaccgttgctccaga 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ttcaattagtgccacaacaaatgttacttcagctgcttccacaacaaccgttgctccaga 1053


Query: 1054 ttccatcatcaacactaaagatgttactgttgtaagctctacattaaccactacaactag 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ttccatcatcaacactaaagatgttactgttgtaagctctacattaaccactacaactag 1113


Query: 1114 tgccacttcatctactaccagtgctacaactcaatcaataccagctccaccatcaccatc 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 tgccacttcatctactaccagtgctacaactcaatcaataccagctccaccatcaccatc 1173


Query: 1174 acaacaacgtgctgctcaatcaatttcaacctcttcagtaacacctgcagcaattacaaa 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 acaacaacgtgctgctcaatcaatttcaacctcttcagtaacacctgcagcaattacaaa 1233


Query: 1234 accaactaaagatgccaaagataagaaagatccagcaaagaaatcaattggtgccacttt 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 accaactaaagatgccaaagataagaaagatccagcaaagaaatcaattggtgccacttt 1293


Query: 1294 aacaagaacagtaacaaaaacattcattagagattcaaaagagaataataaagttccaac 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 aacaagaacagtaacaaaaacattcattagagattcaaaagagaataataaagttccaac 1353


Query: 1354 tggaacttcaccacctgtttcatcatcaacttcaatttcatcctcaactggt 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 tggaacttcaccacctgtttcatcatcaacttcaatttcatcctcaactggt 1405


Score = 733 bits (370), Expect = 0.0
Identities = 370/370 (100%)
Strand = Plus / Plus


Query: 3656 cattatttattagacattataaaaaacaaagatcaagatccgctcaatctaaagactttt 3715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3656 cattatttattagacattataaaaaacaaagatcaagatccgctcaatctaaagactttt 3715


Query: 3716 tcgaatttgaatggttcattcaattaaatttagatgcagattgtaaaaatatactttcat 3775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3716 tcgaatttgaatggttcattcaattaaatttagatgcagattgtaaaaatatactttcat 3775


Query: 3776 tcgatttaaagattagtaatttggttttctccactgatacaagtccaaatattcgtgatc 3835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3776 tcgatttaaagattagtaatttggttttctccactgatacaagtccaaatattcgtgatc 3835


Query: 3836 aacttttagaatcatttaaatcttatttggttagtcaagaatgtgttcaatatataaatt 3895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3836 aacttttagaatcatttaaatcttatttggttagtcaagaatgtgttcaatatataaatt 3895


Query: 3896 tcaatgaaaataaacaacctgttgctgcccctgtcactcctgctactaccattgtaacta 3955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3896 tcaatgaaaataaacaacctgttgctgcccctgtcactcctgctactaccattgtaacta 3955


Query: 3956 caaaagaagaatcaactactgtaactagtagtactacaactgttgttcaagaatcagttc 4015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3956 caaaagaagaatcaactactgtaactagtagtactacaactgttgttcaagaatcagttc 4015


Query: 4016 cttcaacaaa 4025
||||||||||
Sbjct: 4016 cttcaacaaa 4025


Score = 505 bits (255), Expect = e-142
Identities = 255/255 (100%)
Strand = Plus / Plus


Query: 48 gtaattttttaactagacaagatagttcaacacaaaaagaatgggatgaacaaaatgtaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 gtaattttttaactagacaagatagttcaacacaaaaagaatgggatgaacaaaatgtaa 107


Query: 108 cagaagcatttggtttttggaaacaaaaggcagtacaattacaaaaagaaacagagagat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cagaagcatttggtttttggaaacaaaaggcagtacaattacaaaaagaaacagagagat 167


Query: 168 ataatgcaagacgtaatgcaagacaaactattgatttaacaaatattttaagaaagagta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ataatgcaagacgtaatgcaagacaaactattgatttaacaaatattttaagaaagagta 227


Query: 228 caagtagtgatctattgattaaaccacctgttgaatcaccaccattaactcctgttggac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 caagtagtgatctattgattaaaccacctgttgaatcaccaccattaactcctgttggac 287


Query: 288 aagatgatgaaggag 302
|||||||||||||||
Sbjct: 288 aagatgatgaaggag 302


Score = 331 bits (167), Expect = 5e-90
Identities = 167/167 (100%)
Strand = Plus / Plus


Query: 449 gagactgttttacaggctaatcaattagagattaaatatggtggtgaaacaattgcagta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gagactgttttacaggctaatcaattagagattaaatatggtggtgaaacaattgcagta 508


Query: 509 gtcgatgactctggcacaacaccaagagactatagaagatctagaagtatcagttgtgag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtcgatgactctggcacaacaccaagagactatagaagatctagaagtatcagttgtgag 568


Query: 569 attataccaaagataaatggtgtaattacaacctctccacaacgagt 615
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 attataccaaagataaatggtgtaattacaacctctccacaacgagt 615


Score = 111 bits (56), Expect = 9e-24
Identities = 56/56 (100%)
Strand = Plus / Plus


Query: 335 tcttcaccatctacaccatcaaatgatactgatactgagactacagcagcagcagt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcttcaccatctacaccatcaaatgatactgatactgagactacagcagcagcagt 390


Score = 40.1 bits (20), Expect = 0.026
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 812 gttgaatcaccaccattaac 831
||||||||||||||||||||
Sbjct: 257 gttgaatcaccaccattaac 276


Score = 40.1 bits (20), Expect = 0.026
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 257 gttgaatcaccaccattaac 276
||||||||||||||||||||
Sbjct: 812 gttgaatcaccaccattaac 831


>Contig-U11763-1 (Contig-U11763-1Q) /CSM_Contig/Contig-U11763-1Q.Seq.d
Length = 1386

Score = 50.1 bits (25), Expect = 3e-05
Identities = 34/37 (91%)
Strand = Plus / Plus


Query: 916 ttcacaacaaccaccacaaccatcatcacaacaacaa 952
||||||||||| |||||||| ||| ||||||||||||
Sbjct: 518 ttcacaacaacaaccacaacaatcttcacaacaacaa 554


>Contig-U12107-1 (Contig-U12107-1Q) /CSM_Contig/Contig-U12107-1Q.Seq.d
Length = 1441

Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 1692 tttatcaaattcaaataaattaga 1715
||||||||||||||||||||||||
Sbjct: 487 tttatcaaattcaaataaattaga 510


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,312
Number of Sequences: 8402
Number of extensions: 85312
Number of successful extensions: 16497
Number of sequences better than 10.0: 799
length of query: 4025
length of database: 8,075,542
effective HSP length: 17
effective length of query: 4008
effective length of database: 7,932,708
effective search space: 31794293664
effective search space used: 31794293664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2.14
Homology vs DNA
Query= Contig-U15759-1 (Contig-U15759-1Q) /CSM_Contig/Contig-U15759-1Q.Seq.d
(4025 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ398953) Dictyostelium discoideum cDNA clone:dds3g10, 3' e... 1298 0.0 1
(BJ428286) Dictyostelium discoideum cDNA clone:ddv11k11, 3' ... 1294 0.0 1
(BJ353108) Dictyostelium discoideum cDNA clone:dda49c04, 3' ... 1263 0.0 2
(BJ351271) Dictyostelium discoideum cDNA clone:dda42j18, 3' ... 1263 0.0 1
(BJ351252) Dictyostelium discoideum cDNA clone:dda42g13, 3' ... 1255 0.0 2
(BJ405966) Dictyostelium discoideum cDNA clone:dds33l18, 3' ... 1245 0.0 1
(BJ393289) Dictyostelium discoideum cDNA clone:dds30f22, 5' ... 1243 0.0 2
(BJ333049) Dictyostelium discoideum cDNA clone:dda41f07, 5' ... 1243 0.0 1
(BJ431938) Dictyostelium discoideum cDNA clone:ddv17i01, 3' ... 1237 0.0 1
(BJ369681) Dictyostelium discoideum cDNA clone:ddc51k09, 5' ... 1219 0.0 1
(BJ331272) Dictyostelium discoideum cDNA clone:dda34j16, 5' ... 1185 0.0 1
(BJ402091) Dictyostelium discoideum cDNA clone:dds20p08, 3' ... 1158 0.0 1
(BJ333406) Dictyostelium discoideum cDNA clone:dda42j18, 5' ... 1116 0.0 2
(BJ336103) Dictyostelium discoideum cDNA clone:dda52b24, 5' ... 1112 0.0 1
(BJ401321) Dictyostelium discoideum cDNA clone:dds22j21, 3' ... 955 0.0 2
(BJ338780) Dictyostelium discoideum cDNA clone:dda63d02, 5' ... 624 0.0 2
(BJ410145) Dictyostelium discoideum cDNA clone:ddv11k11, 5' ... 541 0.0 4
(BJ379786) Dictyostelium discoideum cDNA clone:ddc36a05, 3' ... 733 0.0 3
(BJ370795) Dictyostelium discoideum cDNA clone:ddc55n07, 5' ... 468 0.0 4
(BJ357704) Dictyostelium discoideum cDNA clone:dda64n09, 3' ... 1001 0.0 1
(BJ335120) Dictyostelium discoideum cDNA clone:dda49c04, 5' ... 696 0.0 3
(BJ334891) Dictyostelium discoideum cDNA clone:dda48n02, 5' ... 731 0.0 3
(BJ385709) Dictyostelium discoideum cDNA clone:ddc55k21, 3' ... 971 0.0 1
(BJ397361) Dictyostelium discoideum cDNA clone:dds46c04, 5' ... 714 0.0 3
(BJ389887) Dictyostelium discoideum cDNA clone:dds20p08, 5' ... 494 0.0 4
(BJ394064) Dictyostelium discoideum cDNA clone:dds33l18, 5' ... 704 0.0 4
(BJ387551) Dictyostelium discoideum cDNA clone:dds3g10, 5' e... 892 0.0 2
(BJ365616) Dictyostelium discoideum cDNA clone:ddc36a05, 5' ... 880 0.0 1
(BJ339182) Dictyostelium discoideum cDNA clone:dda64n09, 5' ... 739 0.0 2
(BJ338486) Dictyostelium discoideum cDNA clone:dda61o17, 5' ... 854 0.0 1
(BJ390560) Dictyostelium discoideum cDNA clone:dds22j21, 5' ... 450 0.0 3
(BJ443971) Dictyostelium discoideum cDNA clone:ddv54d23, 3' ... 795 0.0 2
(AU053514) Dictyostelium discoideum slug cDNA, clone SLI818. 819 0.0 1
(BJ333391) Dictyostelium discoideum cDNA clone:dda42g13, 5' ... 418 0.0 3
(BJ413828) Dictyostelium discoideum cDNA clone:ddv17i01, 5' ... 323 0.0 4
(BJ404741) Dictyostelium discoideum cDNA clone:dds29a17, 3' ... 496 e-162 2
(AU062265) Dictyostelium discoideum slug cDNA, clone SLI818. 446 e-146 2
(BJ403947) Dictyostelium discoideum cDNA clone:dds26f23, 3' ... 398 e-106 1
(BJ352862) Dictyostelium discoideum cDNA clone:dda48n02, 3' ... 387 e-102 1
(AU061166) Dictyostelium discoideum slug cDNA, clone SLD452. 147 6e-31 3
(DC223137) Plasmodium berghei strain ANKA cDNA clone:MZ00696... 42 6e-04 2
(DC219035) Plasmodium berghei strain ANKA cDNA clone:MZ00041... 42 6e-04 2
(DC220004) Plasmodium berghei strain ANKA cDNA clone:MZ00191... 42 6e-04 2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 56 0.002 12
(DC220625) Plasmodium berghei strain ANKA cDNA clone:MZ00293... 42 0.002 2
(AC098898) Rattus norvegicus clone CH230-37I16, WORKING DRAF... 58 0.003 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 48 0.009 16
(CT741780) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.010 4
(CT789283) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.010 4
(AC111695) Rattus norvegicus clone CH230-18E4, WORKING DRAFT... 56 0.011 1
(CT794972) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.011 4
(CT741410) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.011 4
(CT781701) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.029 4
(CT764434) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.037 4
(AC173128) Bos taurus clone CH240-478K21, WORKING DRAFT SEQU... 54 0.042 1
(AC166680) Bos taurus clone CH240-180N1, WORKING DRAFT SEQUE... 54 0.042 1
(AL844509) Plasmodium falciparum chromosome 13. 30 0.058 3
(BJ384409) Dictyostelium discoideum cDNA clone:ddc49i08, 3' ... 34 0.059 4
(EY376153) CAXA1602.fwd CAXA Helobdella robusta Subtracted L... 46 0.065 4
(EY377240) CAXA16609.fwd CAXA Helobdella robusta Subtracted ... 46 0.065 4
(EY372286) CAXA13930.fwd CAXA Helobdella robusta Subtracted ... 46 0.084 3
(EY345235) CAWZ13745.fwd CAWZ Helobdella robusta Primary Lat... 46 0.085 4
(AW694603) NF078B02ST1F1015 Developing stem Medicago truncat... 52 0.087 2
(EY381939) CAXA3767.fwd CAXA Helobdella robusta Subtracted L... 46 0.091 4
(EY366163) CAXA10581.fwd CAXA Helobdella robusta Subtracted ... 46 0.092 4
(EY385459) CAXA5701.fwd CAXA Helobdella robusta Subtracted L... 46 0.093 3
(CT748381) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.094 3
(BJ365730) Dictyostelium discoideum cDNA clone:ddc36l11, 5' ... 50 0.13 2
(CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 52 0.17 1
(AC128958) Rattus norvegicus clone CH230-4C8, *** SEQUENCING... 52 0.17 1
(AC105621) Rattus norvegicus clone CH230-113H3, WORKING DRAF... 52 0.17 1
(BG645472) EST507091 KV3 Medicago truncatula cDNA clone pKV3... 52 0.17 1
(AL279292) Tetraodon nigroviridis genome survey sequence T7 ... 46 0.19 2
(CT778477) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.22 3
(CT804458) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.23 3
(CT764226) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.24 3
(CT783268) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.24 3
(CT819418) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.25 3
(CT766950) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 0.28 4
(CT765934) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.29 3
(CT780845) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.30 3
(CT774051) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.32 3
(CT763343) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.36 3
(EY366068) CAXA10535.fwd CAXA Helobdella robusta Subtracted ... 46 0.37 3
(CT786499) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.39 3
(CT749302) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.41 3
(CT791895) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.41 3
(CT771180) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.41 3
(CT784214) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.42 3
(CT790382) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.43 3
(CT782526) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.43 3
(CT763672) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.44 3
(CT760181) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.45 3
(CT746067) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.46 3
(AJ236263) Marcgravia rectiflora ndhF gene. 50 0.66 1
(AF421065) Marcgravia sp. Anderberg s.n. NADH dehydrogenase ... 50 0.66 1
(AF303487) Marcgravia rectiflora NADH dehydrogenase subunit ... 50 0.66 1
(AF303486) Marcgravia nervosa NADH dehydrogenase subunit F (... 50 0.66 1
(AF303485) Marcgravia nepenthoides NADH dehydrogenase subuni... 50 0.66 1
(AF303484) Marcgravia brownei NADH dehydrogenase subunit F (... 50 0.66 1
(AL117350) Human DNA sequence from clone RP4-803J11 on chrom... 50 0.66 1
(AC132694) Rattus norvegicus clone CH230-490C22, WORKING DRA... 50 0.66 1
(AC128004) Rattus norvegicus clone CH230-262L8, *** SEQUENCI... 50 0.66 1
(AC196754) Citrus sinensis clone CSRBBa-032P20, WORKING DRAF... 50 0.66 1
(FH988605) CHO_OF6844xl18r1.ab1 CHO_OF6 Nicotiana tabacum ge... 50 0.66 1
(FH039944) CHO_OF3299xj01f1.ab1 CHO_OF3 Nicotiana tabacum ge... 50 0.66 1
(ED027052) SBA024_I15.f Sugar beet BAC library USH20 (Code S... 50 0.66 1
(AL573983) human full-length cDNA 3-PRIME end of clone CS0DI... 50 0.66 1
(EY368662) CAXA11936.fwd CAXA Helobdella robusta Subtracted ... 50 0.66 1
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 38 0.68 8
(FE760143) CAYF7379.g3 CAYF Petrolisthes cinctipes heart, wh... 38 1.0 3
(AR551237) Sequence 6368 from patent US 6747137. 38 1.1 3
(AL713894) Mouse DNA sequence from clone RP23-48J18 on chrom... 38 1.3 2
(AL954633) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 38 1.3 2
(DC614203) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 36 1.6 3
(CT767671) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.6 2
(EE005903) ROE00013612 Rhizopus oryzae Company Rhizopus oryz... 48 1.7 2
(CT770280) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT768948) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT780787) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT779884) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT766107) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT769721) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT805828) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT793400) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT779886) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT802746) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT789383) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT818140) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT816551) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT767006) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 1.8 2
(CT774006) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(FF517168) G710P5203RH5.T0 Acorn worm normalized juvenile pE... 36 1.8 2
(CT820246) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT804118) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT816348) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT810082) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(BV079131) px-70d4 Flow-sorted mouse X chromosome library Mu... 38 1.8 2
(CT822068) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(CT758640) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(FF620371) G825P5235RH9.T0 Acorn worm normalized gastrula pE... 36 1.8 2
(FF634179) G825P564RB9.T0 Acorn worm normalized gastrula pEx... 36 1.8 2
(DC223297) Plasmodium berghei strain ANKA cDNA clone:MZ00720... 38 1.8 2
(EC713549) MCE00004651 Malawimonas californiana Company (SMA... 36 1.8 2
(EL586102) CF_WO0_18g06_SP6 Copepod Whole Organism, Normaliz... 40 2.0 2
(BJ324097) Dictyostelium discoideum cDNA clone:dda4b21, 5' e... 34 2.0 3
(BJ388336) Dictyostelium discoideum cDNA clone:dds9e02, 5' e... 34 2.2 3
(BJ369357) Dictyostelium discoideum cDNA clone:ddc50c08, 5' ... 34 2.4 3
(BJ335616) Dictyostelium discoideum cDNA clone:dda50p19, 5' ... 34 2.4 3
(BJ367356) Dictyostelium discoideum cDNA clone:ddc42k10, 5' ... 34 2.5 3
(AZ538522) ENTEN18TF Entamoeba histolytica Sheared DNA Entam... 42 2.5 2
(AZ528814) ENTBX92TR Entamoeba histolytica Sheared DNA Entam... 42 2.5 2
(CU524145) Zebrafish DNA sequence from clone CH211-286C16 in... 48 2.6 1
(AC153361) Mus musculus BAC clone RP23-291L20 from chromosom... 48 2.6 1
(AC148992) Mus musculus BAC clone RP24-337C15 from 10, compl... 48 2.6 1
(AR584244) Sequence 1 from patent US 6797466. 48 2.6 1
(AR271569) Sequence 1 from patent US 6503729. 48 2.6 1
(AC106093) Rattus norvegicus clone CH230-133H11, *** SEQUENC... 48 2.6 1
(CZ287669) cp53h07.r Candida parapsilosis Random Genomic Lib... 48 2.6 1
(CW668482) OG_BBa0024D09.f OG_BBa Oryza glaberrima genomic c... 48 2.6 1
(EB335747) CNSN01-F-143048-501 Normalized CNS library (juven... 48 2.6 1
(EB268745) MCC015-F-019935-501 Non-Normalized MCC Neurons 2 ... 48 2.6 1
(DC618727) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 48 2.6 1
(BJ397039) Dictyostelium discoideum cDNA clone:dds44g24, 5' ... 48 2.6 1
(GD215594) G1045P351FB20.T1 Aplysia californica Pooled Norma... 48 2.6 1
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge... 48 2.6 1
(DQ229163) Neisseria lactamica plasmid pNL9, complete sequence. 48 2.6 1
(CP000153) Sulfurimonas denitrificans DSM 1251, complete gen... 48 2.6 1
(AJ277475) Neisseria meningitidis ORF1, ORF2, ORF3, ORF4, OR... 48 2.6 1
(AZ541307) ENTEC02TF Entamoeba histolytica Sheared DNA Entam... 42 2.6 2
(BJ331150) Dictyostelium discoideum cDNA clone:dda34g04, 5' ... 34 2.6 3
(BJ390236) Dictyostelium discoideum cDNA clone:dds21l18, 5' ... 34 2.8 3
(BJ326951) Dictyostelium discoideum cDNA clone:dda18j13, 5' ... 34 2.8 3
(BJ368613) Dictyostelium discoideum cDNA clone:ddc47k09, 5' ... 34 2.8 3
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 2.9 9
(BJ396699) Dictyostelium discoideum cDNA clone:dds43i17, 5' ... 34 3.0 3
(GE963223) G1219P112FL10.T0 Neurospora crassa cDNA - 7 Days ... 40 3.3 3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 3.3 15
(CT762385) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 3.4 4
(BJ346363) Dictyostelium discoideum cDNA clone:dda30n13, 3' ... 36 3.4 3
(EH650524) OFL-P06_B04 Adult Oncopeltus fasciatus salivary g... 34 3.5 3
(EH649826) OFL-P5_B04 Adult Oncopeltus fasciatus salivary gl... 34 3.5 3
(AX647283) Sequence 1475 from Patent EP1270724. 40 3.9 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 4.0 18
(AU265890) Dictyostelium discoideum vegetative cDNA clone:VS... 38 4.2 2
(BJ339030) Dictyostelium discoideum cDNA clone:dda63j22, 5' ... 32 4.3 4
(CT802163) Paramecium tetraurelia 5-PRIME EST from clone LK0... 38 4.4 2
(AU265889) Dictyostelium discoideum vegetative cDNA clone:VS... 38 4.5 2
(AB009080) Dictyostelium discoideum gene for TRFA, complete ... 34 4.6 5
(AC105837) Rattus norvegicus clone CH230-44I4, *** SEQUENCIN... 34 4.7 2
(AC096190) Rattus norvegicus clone CH230-53J4, *** SEQUENCIN... 32 4.8 2
(AC128330) Rattus norvegicus clone CH230-212F6, WORKING DRAF... 32 4.8 2
(AC174598) Mus musculus BAC clone RP24-234D9 from chromosome... 34 4.9 2
(AC092944) Homo sapiens 3 BAC RP11-550I24 (Roswell Park Canc... 32 4.9 2
(CT757770) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 4.9 4
(AC026562) Homo sapiens chromosome 3 clone RP11-550I24 map 3... 32 4.9 2
(AC131921) Mus musculus chromosome 12, clone RP24-231P11, co... 34 4.9 2
(AC077691) Mus musculus strain C57BL6/J chromosome 12 clone ... 34 4.9 2
(AC069256) Homo sapiens 3 BAC RP11-445G6 (Roswell Park Cance... 32 5.0 2
(CU302348) Medicago truncatula chromosome 5 clone mth2-45a24... 34 5.0 2
(CU302332) Medicago truncatula chromosome 5 clone mth2-139e1... 34 5.0 2
(BU987415) HF14L04r HF Hordeum vulgare subsp. vulgare cDNA c... 32 5.0 4
(BJ407776) Dictyostelium discoideum cDNA clone:dds43i17, 3' ... 34 5.3 3
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 36 5.6 2
(CT739308) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 5.7 4
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 5.7 13
(DL174292) Methods for Identifying the Target of a Compound ... 38 5.7 3
(DL131057) Bax-responsive genes for drug target identificati... 38 5.7 3
(AX536824) Sequence 425 from Patent WO02064766. 38 5.7 3
(AX489484) Sequence 6784 from Patent WO02053728. 38 5.7 3
(AR941617) Sequence 425 from patent US 7101990. 38 5.7 3
(FE688620) Pv022D_M13F_B09.ab1 Phaseolus vulgaris cv Early g... 32 6.0 4
(CT780629) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 6.4 4
(FE688616) Pv017D_M13F_H10.ab1 Phaseolus vulgaris cv Early g... 32 6.5 4
(BF158797) 601766144F1 NCI_CGAP_Lu29 Mus musculus cDNA clone... 36 6.5 2
(DC618774) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 36 6.6 3
(FE793707) CCAG9930.b6 CCAG Petrolisthes cinctipes heart, gi... 34 6.6 2
(FE793708) CCAG9930.g1 CCAG Petrolisthes cinctipes heart, gi... 34 6.6 2
(FE795754) CCAG20379.b1 CCAG Petrolisthes cinctipes heart, g... 34 6.6 2
(BJ234144) Triticum aestivum cDNA clone:whe8n16, 5' end, sin... 36 6.7 2
(AW695893) NF100D11ST1F1093 Developing stem Medicago truncat... 46 6.8 2
(EX605203) 255348450 Pea aphid whole body normalized full le... 46 7.0 2
(FF326371) 280429152 Pea aphid whole body normalized full le... 46 7.3 2
(EX621390) 255415217 Pea aphid whole body normalized full le... 46 7.3 2
(EX651330) 256749985 Pea aphid whole body normalized full le... 46 7.4 2
(FF330074) 280441707 Pea aphid whole body normalized full le... 46 7.4 2
(FF329498) 280440904 Pea aphid whole body normalized full le... 46 7.7 2
(FF311178) 279381103 Pea aphid whole body normalized full le... 46 7.7 2
(FF339384) 280473514 Pea aphid whole body normalized full le... 46 7.8 2
(EX605727) 255353254 Pea aphid whole body normalized full le... 46 7.8 2
(EX614408) 255388182 Pea aphid whole body normalized full le... 46 7.8 2
(EY384325) CAXA5086.fwd CAXA Helobdella robusta Subtracted L... 36 7.9 2
(DE220669) Trifolium pratense DNA, clone:RCG11795. 36 7.9 2
(EX634288) 256593304 Pea aphid whole body normalized full le... 46 7.9 2
(FE793524) CCAG9826.b6 CCAG Petrolisthes cinctipes heart, gi... 36 8.0 2
(BM276593) Yv4-9 Scabies lambda zap express cDNA library Sar... 44 8.0 2
(BJ406732) Dictyostelium discoideum cDNA clone:dds36c11, 3' ... 38 8.1 2
(EG025726) HTAB-aaa24f12.b1 Heterorhabditis_bacteriophora_HT... 36 8.2 2
(CC451102) ZMMBBc0331D03f ZMMBBc Zea mays subsp. mays genomi... 36 8.3 2
(ES409290) HTAB-aaa07g07.b2 Heterorhabditis_bacteriophora_HT... 36 8.4 2
(CV274949) WS0174.B21.1_O08 PTxD-NR-A-8 Populus trichocarpa ... 40 8.4 2
(CT760065) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 8.5 4
(FE688612) Pv023A_M13F_B01.ab1 Phaseolus vulgaris cv Early g... 32 8.5 4
(ES409338) HTAB-aaa07e06.b2 Heterorhabditis_bacteriophora_HT... 36 8.5 2
(CT761524) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 8.5 4
(EY366963) CAXA11006.fwd CAXA Helobdella robusta Subtracted ... 36 8.8 2
(EY380150) CAXA2711.fwd CAXA Helobdella robusta Subtracted L... 36 8.8 2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 32 9.2 14
(EY373782) CAXA14731.fwd CAXA Helobdella robusta Subtracted ... 36 9.2 2
(AU284657) Dictyostelium discoideum gamete cDNA clone:FC-BG0... 36 9.4 3
(CV282930) WS0185.B21_P17 PTxD-IL-N-A-9 Populus trichocarpa ... 40 9.4 2
(AZ244201) RPCI-23-36L9.TJ RPCI-23 Mus musculus genomic clon... 38 9.5 3
(EB626586) AGENCOURT_56943027 D. grimshawi EST Drosophila gr... 32 9.6 4
(AU039812) Dictyostelium discoideum slug cDNA, clone SLG482. 38 9.6 3

>(BJ398953) Dictyostelium discoideum cDNA clone:dds3g10, 3' end,
single read.
Length = 733

Score = 1298 bits (655), Expect = 0.0
Identities = 657/658 (99%)
Strand = Plus / Minus


Query: 2823 ggttaatgttgaaaagttacggtacaatctttggtatcgttgttgagattcaacgtttac 2882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggttaatgttgaaaagttacggtacaatctttggtatcgttgttgagattcaacgtttac 674


Query: 2883 aacaacaaagaaattacacaatgaaaccaaccaaacttttcattcaacttcaagatataa 2942
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ancaacaaagaaattacacaatgaaaccaaccaaacttttcattcaacttcaagatataa 614


Query: 2943 acactgtatcaatggatgagttggctgatctctctttgaaatgtgaaccaccagttagta 3002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acactgtatcaatggatgagttggctgatctctctttgaaatgtgaaccaccagttagta 554


Query: 3003 aggcaaagaaatacaatgctcctgctgatatagtcgatgaagattggagattaaaaatca 3062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aggcaaagaaatacaatgctcctgctgatatagtcgatgaagattggagattaaaaatca 494


Query: 3063 caaaaactttcaataaaccattggcaaccacttcagtcggcatcgatttaccacgtttag 3122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaaaactttcaataaaccattggcaaccacttcagtcggcatcgatttaccacgtttag 434


Query: 3123 cctcttctttcacttttaataccactggtcataaaacaactccagaagagaaatcagcat 3182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cctcttctttcacttttaataccactggtcataaaacaactccagaagagaaatcagcat 374


Query: 3183 atggtaataaaattcaagatatctttcatgttttggtatcattggctcaaattgaatcat 3242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atggtaataaaattcaagatatctttcatgttttggtatcattggctcaaattgaatcat 314


Query: 3243 cagaattggagactgatgttcgtgagaaattcacaacctacataccaatgtcaacagatc 3302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cagaattggagactgatgttcgtgagaaattcacaacctacataccaatgtcaacagatc 254


Query: 3303 cagattcagatttcaagagagagttacttaaatttttggatgaggtttgtcatgctgaca 3362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cagattcagatttcaagagagagttacttaaatttttggatgaggtttgtcatgctgaca 194


Query: 3363 atagtaaattggttagagttttgaaatgttgtaatcaagcaatcatagctccagtcataa 3422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atagtaaattggttagagttttgaaatgttgtaatcaagcaatcatagctccagtcataa 134


Query: 3423 ttgaaatcactctcaatatagctaaaggtgtaccatttatggatgctggtggttggag 3480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ttgaaatcactctcaatatagctaaaggtgtaccatttatggatgctggtggttggag 76

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 4,350,047,120
Number of extensions: 257988204
Number of successful extensions: 22062385
Number of sequences better than 10.0: 259
Length of query: 4025
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 4000
Effective length of database: 96,311,147,814
Effective search space: 385244591256000
Effective search space used: 385244591256000
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.17
Homology vs Protein
Query= Contig-U15759-1 (Contig-U15759-1Q) /CSM_Contig/Contig-U15759-1Q.Seq.d
(4025 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY160093_1(AY160093|pid:none) Dictyostelium discoideum nucleotid... 65 3e-08
AC117075_47(AC117075|pid:none) Dictyostelium discoideum chromoso... 55 2e-05
T18289(T18289) racGAP protein - slime mold (Dictyostelium discoi... 45 0.017
EU652317_9(EU652317|pid:none) Philodina roseola GTP binding prot... 44 0.063
FN392322_709(FN392322|pid:none) Pichia pastoris GS115 chromosome... 43 0.11
EU850440_1(EU850440|pid:none) Philodina roseola rho GTPase activ... 42 0.14
AY219338_1(AY219338|pid:none) Homo sapiens ARHGAP15 mRNA, comple... 41 0.41
(Q6DFG0) RecName: Full=Rho GTPase-activating protein 21-A; AltNa... 40 0.53
BC016701_1(BC016701|pid:none) Homo sapiens Rho GTPase activating... 40 0.53
(Q8IXX1) RecName: Full=Rho GTPase-activating protein 15; AltName... 40 0.53
BC170466_1(BC170466|pid:none) Xenopus laevis Rho GTPase activati... 40 0.53
BX936460_1(BX936460|pid:none) Zebrafish DNA sequence from clone ... 40 0.70
(Q5ZMM3) RecName: Full=Rho GTPase-activating protein 15; AltName... 40 0.70
AJ719758_1(AJ719758|pid:none) Gallus gallus mRNA for hypothetica... 40 0.91
BC167605_1(BC167605|pid:none) Xenopus tropicalis hypothetical pr... 39 1.2
CR457482_4(CR457482|pid:none) Zebrafish DNA sequence from clone ... 39 1.2
Z83838_5(Z83838|pid:none) Human DNA sequence from clone RP1-127B... 39 1.6
BC079089_1(BC079089|pid:none) Rattus norvegicus Rho GTPase activ... 39 1.6
AC116986_28(AC116986|pid:none) Dictyostelium discoideum chromoso... 39 2.0
A59438(A59438;B59438) KIAA1424 protein [imported] - human &AB03... 39 2.0
CU928180_470(CU928180|pid:none) Kluyveromyces thermotolerans str... 39 2.0
AL773540_3(AL773540|pid:none) Mouse DNA sequence from clone RP23... 39 2.0
AL773540_2(AL773540|pid:none) Mouse DNA sequence from clone RP23... 39 2.0
BC150741_1(BC150741|pid:none) Mus musculus Rho GTPase activating... 39 2.0
AK295649_1(AK295649|pid:none) Homo sapiens cDNA FLJ54686 complet... 39 2.0
(Q5T5U3) RecName: Full=Rho GTPase-activating protein 21; AltName... 39 2.0
AL392104_9(AL392104|pid:none) Human DNA sequence from clone RP11... 39 2.0
BC118915_1(BC118915|pid:none) Homo sapiens Rho GTPase activating... 39 2.0
AK122508_1(AK122508|pid:none) Mus musculus premature mRNA for mK... 39 2.0
(Q6DFV3) RecName: Full=Rho GTPase-activating protein 21; AltName... 39 2.0
BX005226_1(BX005226|pid:none) Zebrafish DNA sequence from clone ... 38 3.5
Y00661_1(Y00661|pid:none) Human bcr mRNA (break point cluster ge... 38 3.5
BC048842_1(BC048842|pid:none) Mus musculus breakpoint cluster re... 38 3.5
(Q6PAJ1) RecName: Full=Breakpoint cluster region protein; ... 38 3.5
AK129482_1(AK129482|pid:none) Mus musculus mRNA for mKIAA3017 pr... 38 3.5
AL392104_8(AL392104|pid:none) Human DNA sequence from clone RP11... 38 3.5
BC002193_1(BC002193|pid:none) Mus musculus breakpoint cluster re... 38 3.5
CU633438_916(CU633438|pid:none) Podospora anserina genomic DNA c... 38 3.5
AL691489_9(AL691489|pid:none) Mouse DNA sequence from clone RP23... 37 5.9
AK143916_1(AK143916|pid:none) Mus musculus adult male kidney cDN... 37 5.9
AK079048_1(AK079048|pid:none) Mus musculus adult male diencephal... 37 5.9
(A2AB59) RecName: Full=Rho GTPase-activating protein 27; AltName... 37 5.9
AY891643_1(AY891643|pid:none) Synthetic construct Homo sapiens c... 37 5.9
AK298562_1(AK298562|pid:none) Homo sapiens cDNA FLJ60782 complet... 37 5.9
AK173187_1(AK173187|pid:none) Mus musculus mRNA for mKIAA1501 pr... 37 5.9
(Q5FWK3) RecName: Full=Rho GTPase-activating protein 1; AltName:... 37 5.9
AK046763_1(AK046763|pid:none) Mus musculus 4 days neonate thymus... 37 5.9
AK084622_1(AK084622|pid:none) Mus musculus 13 days embryo heart ... 37 5.9
AL596088_3(AL596088|pid:none) Mouse DNA sequence from clone RP23... 37 5.9
AK046291_1(AK046291|pid:none) Mus musculus adult male corpora qu... 37 5.9
(Q07960) RecName: Full=Rho GTPase-activating protein 1; AltName:... 37 5.9
BC156106_1(BC156106|pid:none) Synthetic construct Mus musculus c... 37 5.9
BC046844_1(BC046844|pid:none) Xenopus laevis Rho GTPase activati... 37 5.9
(Q8C0D4) RecName: Full=Rho GTPase-activating protein 12; AltName... 37 7.7
AK298356_1(AK298356|pid:none) Homo sapiens cDNA FLJ56603 complet... 37 7.7
(Q9BE31) RecName: Full=Rho GTPase-activating protein 12; AltName... 37 7.7
BC059382_1(BC059382|pid:none) Homo sapiens Rho GTPase activating... 37 7.7
(Q9NRY4) RecName: Full=Glucocorticoid receptor DNA-binding facto... 37 7.7
AK077063_1(AK077063|pid:none) Mus musculus adult male testis cDN... 37 7.7
BC024633_1(BC024633|pid:none) Mus musculus Rho GTPase activating... 37 7.7
BC035541_1(BC035541|pid:none) Mus musculus glucocorticoid recept... 37 7.7
(Q91YM2) RecName: Full=Glucocorticoid receptor DNA-binding facto... 37 7.7
AK022305_1(AK022305|pid:none) Homo sapiens cDNA FLJ12243 fis, cl... 37 7.7
(P83509) RecName: Full=Glucocorticoid receptor DNA-binding facto... 37 7.7
T34369(T34369)hypothetical protein T19D12.1 - Caenorhabditis ele... 37 7.7
(Q9P227) RecName: Full=Rho GTPase-activating protein 23; AltName... 37 7.7
AL355192_1(AL355192|pid:none) Novel human gene mapping to chomos... 37 7.7
AK031648_1(AK031648|pid:none) Mus musculus 13 days embryo male t... 37 7.7
AF195968_1(AF195968|pid:none) Homo sapiens rho GTPase activating... 37 7.7
(Q6AYC5) RecName: Full=Rho GTPase-activating protein 15; AltName... 37 7.7
AF159851_1(AF159851|pid:none) Homo sapiens Rho GAP p190-A mRNA, ... 37 7.7
BC141184_1(BC141184|pid:none) Mus musculus Rho GTPase activating... 37 7.7
BC149489_1(BC149489|pid:none) Bos taurus Rho GTPase activating p... 37 7.7
AM270251_33(AM270251|pid:none) Aspergillus niger contig An11c034... 37 7.7
BC010490_1(BC010490|pid:none) Homo sapiens Rho GTPase activating... 37 7.7
A59434(A59434;B59434) KIAA1501 protein [imported] - human &AB04... 37 7.7
AL732320_3(AL732320|pid:none) Mouse DNA sequence from clone RP23... 37 7.7
BC048280_1(BC048280|pid:none) Homo sapiens Rho GTPase activating... 37 7.7

>AY160093_1(AY160093|pid:none) Dictyostelium discoideum nucleotide
exchange factor RasGEF D (gefD) gene, complete cds.
Length = 668

Score = 64.7 bits (156), Expect = 3e-08
Identities = 52/225 (23%), Positives = 104/225 (46%), Gaps = 13/225 (5%)
Frame = +1

Query: 1756 VREIRKRSDLERI------DFSIIGDPRVVAGLLILFFAELPQPLFNSKFFGDLVEINDI 1917
+ E + +S +E I DFS+ DP VA IL+F++LP L SK L+ +I
Sbjct: 70 IEESKLKSTIESIESTLITDFSLTTDPCYVASTFILYFSKLPNLLL-SKISSQLIHSVEI 128

Query: 1918 TNPQVKLNDLKXXXXXXXXXXXXXXXXXVTFFTSKYI------NGNSVTTRAIAIQSIAQ 2079
++ + ++N ++ + F + N NS I Q
Sbjct: 129 SHEEYRINVIRSLLYSLPLQNRNILKMVLHFLKKFSLACNNNNNNNSENNNTIVEDIEVQ 188

Query: 2080 SFGPQFFRG-TSSSDSDIQVGIETLKLIIDNYVFLFEKTNEPDVKYKNIDGKMIISEGSI 2256
S +F + S++ + ++ + ++L++ + + F+K + D++Y DG+ I+ +
Sbjct: 189 SAYNRFTKAFMSTTPGNFEISCKAIRLMVMD-IDEFDKLPQ-DIQYMVKDGESIVKAATF 246

Query: 2257 DKLIDKATDQYYPYNEKYFSLTFFITHLFFIQPHELADKLITLYR 2391
D+L++K D Y + + ++ T F T+ ++ EL K++ YR
Sbjct: 247 DRLVEKLFDLSYGFKDPDYNYTVFHTYDYYTTSVELLGKIVHYYR 291

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 4,624,939,318
Number of extensions: 78185844
Number of successful extensions: 215785
Number of sequences better than 10.0: 78
Number of HSP's gapped: 215687
Number of HSP's successfully gapped: 78
Length of query: 1341
Length of database: 1,051,180,864
Length adjustment: 141
Effective length of query: 1200
Effective length of database: 594,826,045
Effective search space: 713791254000
Effective search space used: 713791254000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.45 alm: 0.31 top: 0.60 tms: 0.07 mit: 0.14 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.50 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for Contig-U15759-1 is nuc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 2
AH (FL, L) 10
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 5
SF (FL, S) 3
CH (FL, L) 4
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0