Contig-U15759-1 |
Contig ID |
Contig-U15759-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
4015 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4927023 |
End point |
4923008 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
26 |
Number of EST |
37 |
Link to clone list |
U15759 |
List of clone(s) |
est1=SHC565Z,-166,452 est2=SFJ832F,54,673 est3=SLI818F,78,388 est4=CHQ731F,181,869 est5=VFF146E,216,1500 est6=VFI105F,278,781 est7=SFK785E,318,1501 est8=VFI105Z,784,1499 est9=CHQ586Z,810,1303 est10=SFJ832Z,824,1463 est11=VHL790Z,875,1302 est12=CHH117F,961,1562 est13=SLI818Z,992,1475 est14=SHE870F,1002,1676 est15=AHJ210F,1314,1995 est16=AHF552F,1315,1859 est17=SHL210F,1335,2006 est18=AHI807F,1336,2013 est19=SHB391Z,1366,1801 est20=AHQ739F,1415,2017 est21=AHF869F,1592,2212 est22=SHD483F,1596,2276 est23=AHP172F,1620,2071 est24=AHK889F,1731,2292 est25=CHO538F,1733,2350 est26=AHQ402F,1876,2495 est27=SFB236F,1929,2423 est28=AHF327F,2091,2726 est29=AHB861F,2200,2797 est30=AHF552Z,2798,3545 est31=AHJ210Z,2802,3549 est32=SFB236Z,2813,3545 est33=AHF869Z,2822,3580 est34=SHE870Z,2829,3550 est35=AHQ739Z,2965,3545 est36=CHH117Z,3268,4015 est37=AHI807Z,3660,3920
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 2.14 |
Homology vs DNA |
Query= Contig-U15759-1 (Contig-U15759-1Q) /CSM_Contig/Contig-U15759-1Q.Seq.d (4025 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ398953) Dictyostelium discoideum cDNA clone:dds3g10, 3' e... 1298 0.0 1 (BJ428286) Dictyostelium discoideum cDNA clone:ddv11k11, 3' ... 1294 0.0 1 (BJ353108) Dictyostelium discoideum cDNA clone:dda49c04, 3' ... 1263 0.0 2 (BJ351271) Dictyostelium discoideum cDNA clone:dda42j18, 3' ... 1263 0.0 1 (BJ351252) Dictyostelium discoideum cDNA clone:dda42g13, 3' ... 1255 0.0 2 (BJ405966) Dictyostelium discoideum cDNA clone:dds33l18, 3' ... 1245 0.0 1 (BJ393289) Dictyostelium discoideum cDNA clone:dds30f22, 5' ... 1243 0.0 2 (BJ333049) Dictyostelium discoideum cDNA clone:dda41f07, 5' ... 1243 0.0 1 (BJ431938) Dictyostelium discoideum cDNA clone:ddv17i01, 3' ... 1237 0.0 1 (BJ369681) Dictyostelium discoideum cDNA clone:ddc51k09, 5' ... 1219 0.0 1 (BJ331272) Dictyostelium discoideum cDNA clone:dda34j16, 5' ... 1185 0.0 1 (BJ402091) Dictyostelium discoideum cDNA clone:dds20p08, 3' ... 1158 0.0 1 (BJ333406) Dictyostelium discoideum cDNA clone:dda42j18, 5' ... 1116 0.0 2 (BJ336103) Dictyostelium discoideum cDNA clone:dda52b24, 5' ... 1112 0.0 1 (BJ401321) Dictyostelium discoideum cDNA clone:dds22j21, 3' ... 955 0.0 2 (BJ338780) Dictyostelium discoideum cDNA clone:dda63d02, 5' ... 624 0.0 2 (BJ410145) Dictyostelium discoideum cDNA clone:ddv11k11, 5' ... 541 0.0 4 (BJ379786) Dictyostelium discoideum cDNA clone:ddc36a05, 3' ... 733 0.0 3 (BJ370795) Dictyostelium discoideum cDNA clone:ddc55n07, 5' ... 468 0.0 4 (BJ357704) Dictyostelium discoideum cDNA clone:dda64n09, 3' ... 1001 0.0 1 (BJ335120) Dictyostelium discoideum cDNA clone:dda49c04, 5' ... 696 0.0 3 (BJ334891) Dictyostelium discoideum cDNA clone:dda48n02, 5' ... 731 0.0 3 (BJ385709) Dictyostelium discoideum cDNA clone:ddc55k21, 3' ... 971 0.0 1 (BJ397361) Dictyostelium discoideum cDNA clone:dds46c04, 5' ... 714 0.0 3 (BJ389887) Dictyostelium discoideum cDNA clone:dds20p08, 5' ... 494 0.0 4 (BJ394064) Dictyostelium discoideum cDNA clone:dds33l18, 5' ... 704 0.0 4 (BJ387551) Dictyostelium discoideum cDNA clone:dds3g10, 5' e... 892 0.0 2 (BJ365616) Dictyostelium discoideum cDNA clone:ddc36a05, 5' ... 880 0.0 1 (BJ339182) Dictyostelium discoideum cDNA clone:dda64n09, 5' ... 739 0.0 2 (BJ338486) Dictyostelium discoideum cDNA clone:dda61o17, 5' ... 854 0.0 1 (BJ390560) Dictyostelium discoideum cDNA clone:dds22j21, 5' ... 450 0.0 3 (BJ443971) Dictyostelium discoideum cDNA clone:ddv54d23, 3' ... 795 0.0 2 (AU053514) Dictyostelium discoideum slug cDNA, clone SLI818. 819 0.0 1 (BJ333391) Dictyostelium discoideum cDNA clone:dda42g13, 5' ... 418 0.0 3 (BJ413828) Dictyostelium discoideum cDNA clone:ddv17i01, 5' ... 323 0.0 4 (BJ404741) Dictyostelium discoideum cDNA clone:dds29a17, 3' ... 496 e-162 2 (AU062265) Dictyostelium discoideum slug cDNA, clone SLI818. 446 e-146 2 (BJ403947) Dictyostelium discoideum cDNA clone:dds26f23, 3' ... 398 e-106 1 (BJ352862) Dictyostelium discoideum cDNA clone:dda48n02, 3' ... 387 e-102 1 (AU061166) Dictyostelium discoideum slug cDNA, clone SLD452. 147 6e-31 3 (DC223137) Plasmodium berghei strain ANKA cDNA clone:MZ00696... 42 6e-04 2 (DC219035) Plasmodium berghei strain ANKA cDNA clone:MZ00041... 42 6e-04 2 (DC220004) Plasmodium berghei strain ANKA cDNA clone:MZ00191... 42 6e-04 2 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 56 0.002 12 (DC220625) Plasmodium berghei strain ANKA cDNA clone:MZ00293... 42 0.002 2 (AC098898) Rattus norvegicus clone CH230-37I16, WORKING DRAF... 58 0.003 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 48 0.009 16 (CT741780) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.010 4 (CT789283) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.010 4 (AC111695) Rattus norvegicus clone CH230-18E4, WORKING DRAFT... 56 0.011 1 (CT794972) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.011 4 (CT741410) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.011 4 (CT781701) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.029 4 (CT764434) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.037 4 (AC173128) Bos taurus clone CH240-478K21, WORKING DRAFT SEQU... 54 0.042 1 (AC166680) Bos taurus clone CH240-180N1, WORKING DRAFT SEQUE... 54 0.042 1 (AL844509) Plasmodium falciparum chromosome 13. 30 0.058 3 (BJ384409) Dictyostelium discoideum cDNA clone:ddc49i08, 3' ... 34 0.059 4 (EY376153) CAXA1602.fwd CAXA Helobdella robusta Subtracted L... 46 0.065 4 (EY377240) CAXA16609.fwd CAXA Helobdella robusta Subtracted ... 46 0.065 4 (EY372286) CAXA13930.fwd CAXA Helobdella robusta Subtracted ... 46 0.084 3 (EY345235) CAWZ13745.fwd CAWZ Helobdella robusta Primary Lat... 46 0.085 4 (AW694603) NF078B02ST1F1015 Developing stem Medicago truncat... 52 0.087 2 (EY381939) CAXA3767.fwd CAXA Helobdella robusta Subtracted L... 46 0.091 4 (EY366163) CAXA10581.fwd CAXA Helobdella robusta Subtracted ... 46 0.092 4 (EY385459) CAXA5701.fwd CAXA Helobdella robusta Subtracted L... 46 0.093 3 (CT748381) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.094 3 (BJ365730) Dictyostelium discoideum cDNA clone:ddc36l11, 5' ... 50 0.13 2 (CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 52 0.17 1 (AC128958) Rattus norvegicus clone CH230-4C8, *** SEQUENCING... 52 0.17 1 (AC105621) Rattus norvegicus clone CH230-113H3, WORKING DRAF... 52 0.17 1 (BG645472) EST507091 KV3 Medicago truncatula cDNA clone pKV3... 52 0.17 1 (AL279292) Tetraodon nigroviridis genome survey sequence T7 ... 46 0.19 2 (CT778477) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.22 3 (CT804458) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.23 3 (CT764226) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.24 3 (CT783268) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.24 3 (CT819418) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.25 3 (CT766950) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 0.28 4 (CT765934) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.29 3 (CT780845) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.30 3 (CT774051) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.32 3 (CT763343) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.36 3 (EY366068) CAXA10535.fwd CAXA Helobdella robusta Subtracted ... 46 0.37 3 (CT786499) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.39 3 (CT749302) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.41 3 (CT791895) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.41 3 (CT771180) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.41 3 (CT784214) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.42 3 (CT790382) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.43 3 (CT782526) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.43 3 (CT763672) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.44 3 (CT760181) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.45 3 (CT746067) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.46 3 (AJ236263) Marcgravia rectiflora ndhF gene. 50 0.66 1 (AF421065) Marcgravia sp. Anderberg s.n. NADH dehydrogenase ... 50 0.66 1 (AF303487) Marcgravia rectiflora NADH dehydrogenase subunit ... 50 0.66 1 (AF303486) Marcgravia nervosa NADH dehydrogenase subunit F (... 50 0.66 1 (AF303485) Marcgravia nepenthoides NADH dehydrogenase subuni... 50 0.66 1 (AF303484) Marcgravia brownei NADH dehydrogenase subunit F (... 50 0.66 1 (AL117350) Human DNA sequence from clone RP4-803J11 on chrom... 50 0.66 1 (AC132694) Rattus norvegicus clone CH230-490C22, WORKING DRA... 50 0.66 1 (AC128004) Rattus norvegicus clone CH230-262L8, *** SEQUENCI... 50 0.66 1 (AC196754) Citrus sinensis clone CSRBBa-032P20, WORKING DRAF... 50 0.66 1 (FH988605) CHO_OF6844xl18r1.ab1 CHO_OF6 Nicotiana tabacum ge... 50 0.66 1 (FH039944) CHO_OF3299xj01f1.ab1 CHO_OF3 Nicotiana tabacum ge... 50 0.66 1 (ED027052) SBA024_I15.f Sugar beet BAC library USH20 (Code S... 50 0.66 1 (AL573983) human full-length cDNA 3-PRIME end of clone CS0DI... 50 0.66 1 (EY368662) CAXA11936.fwd CAXA Helobdella robusta Subtracted ... 50 0.66 1 (AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 38 0.68 8 (FE760143) CAYF7379.g3 CAYF Petrolisthes cinctipes heart, wh... 38 1.0 3 (AR551237) Sequence 6368 from patent US 6747137. 38 1.1 3 (AL713894) Mouse DNA sequence from clone RP23-48J18 on chrom... 38 1.3 2 (AL954633) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 38 1.3 2 (DC614203) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 36 1.6 3 (CT767671) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.6 2 (EE005903) ROE00013612 Rhizopus oryzae Company Rhizopus oryz... 48 1.7 2 (CT770280) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT768948) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT780787) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT779884) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT766107) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT769721) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT805828) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT793400) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT779886) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT802746) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT789383) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT818140) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT816551) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT767006) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 1.8 2 (CT774006) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (FF517168) G710P5203RH5.T0 Acorn worm normalized juvenile pE... 36 1.8 2 (CT820246) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT804118) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT816348) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT810082) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (BV079131) px-70d4 Flow-sorted mouse X chromosome library Mu... 38 1.8 2 (CT822068) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (CT758640) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (FF620371) G825P5235RH9.T0 Acorn worm normalized gastrula pE... 36 1.8 2 (FF634179) G825P564RB9.T0 Acorn worm normalized gastrula pEx... 36 1.8 2 (DC223297) Plasmodium berghei strain ANKA cDNA clone:MZ00720... 38 1.8 2 (EC713549) MCE00004651 Malawimonas californiana Company (SMA... 36 1.8 2 (EL586102) CF_WO0_18g06_SP6 Copepod Whole Organism, Normaliz... 40 2.0 2 (BJ324097) Dictyostelium discoideum cDNA clone:dda4b21, 5' e... 34 2.0 3 (BJ388336) Dictyostelium discoideum cDNA clone:dds9e02, 5' e... 34 2.2 3 (BJ369357) Dictyostelium discoideum cDNA clone:ddc50c08, 5' ... 34 2.4 3 (BJ335616) Dictyostelium discoideum cDNA clone:dda50p19, 5' ... 34 2.4 3 (BJ367356) Dictyostelium discoideum cDNA clone:ddc42k10, 5' ... 34 2.5 3 (AZ538522) ENTEN18TF Entamoeba histolytica Sheared DNA Entam... 42 2.5 2 (AZ528814) ENTBX92TR Entamoeba histolytica Sheared DNA Entam... 42 2.5 2 (CU524145) Zebrafish DNA sequence from clone CH211-286C16 in... 48 2.6 1 (AC153361) Mus musculus BAC clone RP23-291L20 from chromosom... 48 2.6 1 (AC148992) Mus musculus BAC clone RP24-337C15 from 10, compl... 48 2.6 1 (AR584244) Sequence 1 from patent US 6797466. 48 2.6 1 (AR271569) Sequence 1 from patent US 6503729. 48 2.6 1 (AC106093) Rattus norvegicus clone CH230-133H11, *** SEQUENC... 48 2.6 1 (CZ287669) cp53h07.r Candida parapsilosis Random Genomic Lib... 48 2.6 1 (CW668482) OG_BBa0024D09.f OG_BBa Oryza glaberrima genomic c... 48 2.6 1 (EB335747) CNSN01-F-143048-501 Normalized CNS library (juven... 48 2.6 1 (EB268745) MCC015-F-019935-501 Non-Normalized MCC Neurons 2 ... 48 2.6 1 (DC618727) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 48 2.6 1 (BJ397039) Dictyostelium discoideum cDNA clone:dds44g24, 5' ... 48 2.6 1 (GD215594) G1045P351FB20.T1 Aplysia californica Pooled Norma... 48 2.6 1 (L77117) Methanocaldococcus jannaschii DSM 2661, complete ge... 48 2.6 1 (DQ229163) Neisseria lactamica plasmid pNL9, complete sequence. 48 2.6 1 (CP000153) Sulfurimonas denitrificans DSM 1251, complete gen... 48 2.6 1 (AJ277475) Neisseria meningitidis ORF1, ORF2, ORF3, ORF4, OR... 48 2.6 1 (AZ541307) ENTEC02TF Entamoeba histolytica Sheared DNA Entam... 42 2.6 2 (BJ331150) Dictyostelium discoideum cDNA clone:dda34g04, 5' ... 34 2.6 3 (BJ390236) Dictyostelium discoideum cDNA clone:dds21l18, 5' ... 34 2.8 3 (BJ326951) Dictyostelium discoideum cDNA clone:dda18j13, 5' ... 34 2.8 3 (BJ368613) Dictyostelium discoideum cDNA clone:ddc47k09, 5' ... 34 2.8 3 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 2.9 9 (BJ396699) Dictyostelium discoideum cDNA clone:dds43i17, 5' ... 34 3.0 3 (GE963223) G1219P112FL10.T0 Neurospora crassa cDNA - 7 Days ... 40 3.3 3 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 3.3 15 (CT762385) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 3.4 4 (BJ346363) Dictyostelium discoideum cDNA clone:dda30n13, 3' ... 36 3.4 3 (EH650524) OFL-P06_B04 Adult Oncopeltus fasciatus salivary g... 34 3.5 3 (EH649826) OFL-P5_B04 Adult Oncopeltus fasciatus salivary gl... 34 3.5 3 (AX647283) Sequence 1475 from Patent EP1270724. 40 3.9 3 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 4.0 18 (AU265890) Dictyostelium discoideum vegetative cDNA clone:VS... 38 4.2 2 (BJ339030) Dictyostelium discoideum cDNA clone:dda63j22, 5' ... 32 4.3 4 (CT802163) Paramecium tetraurelia 5-PRIME EST from clone LK0... 38 4.4 2 (AU265889) Dictyostelium discoideum vegetative cDNA clone:VS... 38 4.5 2 (AB009080) Dictyostelium discoideum gene for TRFA, complete ... 34 4.6 5 (AC105837) Rattus norvegicus clone CH230-44I4, *** SEQUENCIN... 34 4.7 2 (AC096190) Rattus norvegicus clone CH230-53J4, *** SEQUENCIN... 32 4.8 2 (AC128330) Rattus norvegicus clone CH230-212F6, WORKING DRAF... 32 4.8 2 (AC174598) Mus musculus BAC clone RP24-234D9 from chromosome... 34 4.9 2 (AC092944) Homo sapiens 3 BAC RP11-550I24 (Roswell Park Canc... 32 4.9 2 (CT757770) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 4.9 4 (AC026562) Homo sapiens chromosome 3 clone RP11-550I24 map 3... 32 4.9 2 (AC131921) Mus musculus chromosome 12, clone RP24-231P11, co... 34 4.9 2 (AC077691) Mus musculus strain C57BL6/J chromosome 12 clone ... 34 4.9 2 (AC069256) Homo sapiens 3 BAC RP11-445G6 (Roswell Park Cance... 32 5.0 2 (CU302348) Medicago truncatula chromosome 5 clone mth2-45a24... 34 5.0 2 (CU302332) Medicago truncatula chromosome 5 clone mth2-139e1... 34 5.0 2 (BU987415) HF14L04r HF Hordeum vulgare subsp. vulgare cDNA c... 32 5.0 4 (BJ407776) Dictyostelium discoideum cDNA clone:dds43i17, 3' ... 34 5.3 3 (AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 36 5.6 2 (CT739308) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 5.7 4 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 5.7 13 (DL174292) Methods for Identifying the Target of a Compound ... 38 5.7 3 (DL131057) Bax-responsive genes for drug target identificati... 38 5.7 3 (AX536824) Sequence 425 from Patent WO02064766. 38 5.7 3 (AX489484) Sequence 6784 from Patent WO02053728. 38 5.7 3 (AR941617) Sequence 425 from patent US 7101990. 38 5.7 3 (FE688620) Pv022D_M13F_B09.ab1 Phaseolus vulgaris cv Early g... 32 6.0 4 (CT780629) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 6.4 4 (FE688616) Pv017D_M13F_H10.ab1 Phaseolus vulgaris cv Early g... 32 6.5 4 (BF158797) 601766144F1 NCI_CGAP_Lu29 Mus musculus cDNA clone... 36 6.5 2 (DC618774) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 36 6.6 3 (FE793707) CCAG9930.b6 CCAG Petrolisthes cinctipes heart, gi... 34 6.6 2 (FE793708) CCAG9930.g1 CCAG Petrolisthes cinctipes heart, gi... 34 6.6 2 (FE795754) CCAG20379.b1 CCAG Petrolisthes cinctipes heart, g... 34 6.6 2 (BJ234144) Triticum aestivum cDNA clone:whe8n16, 5' end, sin... 36 6.7 2 (AW695893) NF100D11ST1F1093 Developing stem Medicago truncat... 46 6.8 2 (EX605203) 255348450 Pea aphid whole body normalized full le... 46 7.0 2 (FF326371) 280429152 Pea aphid whole body normalized full le... 46 7.3 2 (EX621390) 255415217 Pea aphid whole body normalized full le... 46 7.3 2 (EX651330) 256749985 Pea aphid whole body normalized full le... 46 7.4 2 (FF330074) 280441707 Pea aphid whole body normalized full le... 46 7.4 2 (FF329498) 280440904 Pea aphid whole body normalized full le... 46 7.7 2 (FF311178) 279381103 Pea aphid whole body normalized full le... 46 7.7 2 (FF339384) 280473514 Pea aphid whole body normalized full le... 46 7.8 2 (EX605727) 255353254 Pea aphid whole body normalized full le... 46 7.8 2 (EX614408) 255388182 Pea aphid whole body normalized full le... 46 7.8 2 (EY384325) CAXA5086.fwd CAXA Helobdella robusta Subtracted L... 36 7.9 2 (DE220669) Trifolium pratense DNA, clone:RCG11795. 36 7.9 2 (EX634288) 256593304 Pea aphid whole body normalized full le... 46 7.9 2 (FE793524) CCAG9826.b6 CCAG Petrolisthes cinctipes heart, gi... 36 8.0 2 (BM276593) Yv4-9 Scabies lambda zap express cDNA library Sar... 44 8.0 2 (BJ406732) Dictyostelium discoideum cDNA clone:dds36c11, 3' ... 38 8.1 2 (EG025726) HTAB-aaa24f12.b1 Heterorhabditis_bacteriophora_HT... 36 8.2 2 (CC451102) ZMMBBc0331D03f ZMMBBc Zea mays subsp. mays genomi... 36 8.3 2 (ES409290) HTAB-aaa07g07.b2 Heterorhabditis_bacteriophora_HT... 36 8.4 2 (CV274949) WS0174.B21.1_O08 PTxD-NR-A-8 Populus trichocarpa ... 40 8.4 2 (CT760065) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 8.5 4 (FE688612) Pv023A_M13F_B01.ab1 Phaseolus vulgaris cv Early g... 32 8.5 4 (ES409338) HTAB-aaa07e06.b2 Heterorhabditis_bacteriophora_HT... 36 8.5 2 (CT761524) Paramecium tetraurelia 5-PRIME EST from clone LK0... 34 8.5 4 (EY366963) CAXA11006.fwd CAXA Helobdella robusta Subtracted ... 36 8.8 2 (EY380150) CAXA2711.fwd CAXA Helobdella robusta Subtracted L... 36 8.8 2 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 32 9.2 14 (EY373782) CAXA14731.fwd CAXA Helobdella robusta Subtracted ... 36 9.2 2 (AU284657) Dictyostelium discoideum gamete cDNA clone:FC-BG0... 36 9.4 3 (CV282930) WS0185.B21_P17 PTxD-IL-N-A-9 Populus trichocarpa ... 40 9.4 2 (AZ244201) RPCI-23-36L9.TJ RPCI-23 Mus musculus genomic clon... 38 9.5 3 (EB626586) AGENCOURT_56943027 D. grimshawi EST Drosophila gr... 32 9.6 4 (AU039812) Dictyostelium discoideum slug cDNA, clone SLG482. 38 9.6 3
>(BJ398953) Dictyostelium discoideum cDNA clone:dds3g10, 3' end, single read. Length = 733
Score = 1298 bits (655), Expect = 0.0 Identities = 657/658 (99%) Strand = Plus / Minus
Query: 2823 ggttaatgttgaaaagttacggtacaatctttggtatcgttgttgagattcaacgtttac 2882 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 733 ggttaatgttgaaaagttacggtacaatctttggtatcgttgttgagattcaacgtttac 674
Query: 2883 aacaacaaagaaattacacaatgaaaccaaccaaacttttcattcaacttcaagatataa 2942 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 673 ancaacaaagaaattacacaatgaaaccaaccaaacttttcattcaacttcaagatataa 614
Query: 2943 acactgtatcaatggatgagttggctgatctctctttgaaatgtgaaccaccagttagta 3002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 613 acactgtatcaatggatgagttggctgatctctctttgaaatgtgaaccaccagttagta 554
Query: 3003 aggcaaagaaatacaatgctcctgctgatatagtcgatgaagattggagattaaaaatca 3062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 aggcaaagaaatacaatgctcctgctgatatagtcgatgaagattggagattaaaaatca 494
Query: 3063 caaaaactttcaataaaccattggcaaccacttcagtcggcatcgatttaccacgtttag 3122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 caaaaactttcaataaaccattggcaaccacttcagtcggcatcgatttaccacgtttag 434
Query: 3123 cctcttctttcacttttaataccactggtcataaaacaactccagaagagaaatcagcat 3182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 cctcttctttcacttttaataccactggtcataaaacaactccagaagagaaatcagcat 374
Query: 3183 atggtaataaaattcaagatatctttcatgttttggtatcattggctcaaattgaatcat 3242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 atggtaataaaattcaagatatctttcatgttttggtatcattggctcaaattgaatcat 314
Query: 3243 cagaattggagactgatgttcgtgagaaattcacaacctacataccaatgtcaacagatc 3302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 cagaattggagactgatgttcgtgagaaattcacaacctacataccaatgtcaacagatc 254
Query: 3303 cagattcagatttcaagagagagttacttaaatttttggatgaggtttgtcatgctgaca 3362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 cagattcagatttcaagagagagttacttaaatttttggatgaggtttgtcatgctgaca 194
Query: 3363 atagtaaattggttagagttttgaaatgttgtaatcaagcaatcatagctccagtcataa 3422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 atagtaaattggttagagttttgaaatgttgtaatcaagcaatcatagctccagtcataa 134
Query: 3423 ttgaaatcactctcaatatagctaaaggtgtaccatttatggatgctggtggttggag 3480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 ttgaaatcactctcaatatagctaaaggtgtaccatttatggatgctggtggttggag 76
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 4,350,047,120 Number of extensions: 257988204 Number of successful extensions: 22062385 Number of sequences better than 10.0: 259 Length of query: 4025 Length of database: 98,766,808,389 Length adjustment: 25 Effective length of query: 4000 Effective length of database: 96,311,147,814 Effective search space: 385244591256000 Effective search space used: 385244591256000 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.17 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
2 |
AH (FL, L) |
10 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
5 |
SF (FL, S) |
3 |
CH (FL, L) |
4 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |