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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03159-1
Contig ID Contig-U03159-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03159-1 (Contig-U03159-1Q) /CSM_Contig/Contig-U03159-1Q.Seq.d
ATTAAATTATAATTTTCAAAACAAATATTTATTAAAAAAATGGTAGTTCA
AATTAACAGTTGTAGGAGTTGCCGCAGCCATAGGTATTGCTGCTGGTGTA
GTTAGTATTGGAACAACATTAGTAGACAAGATCAAAGGTTTCCTTCCAAA
TAATGAGGCTGATAGAAAAGAAGTTAAATATTTATCATTCAAAGATGGTC
AACCAACAAATGGTTTTAGACTAATTCTTGTAAATGAAAAAACTGGTTGG
AATAAAGCTGTTCGTATCTACACAAATCCAGGTGGTGCTGATTACCAAGA
GGTAAAAGCTGGTGATTCAACTGGTACAGTTTGTAAAGGTAATATGCATC
TTAAGTATGATACTAAAAGAGTTAATTTCCCAACAAATAAGGAATACATT
ACTTTGAATCTTATGAAACCAGGTGCATTGGGTATTTACTCAACAGTAGA
CGAAATTAGAATTTACAAAGACAAATTTGCTGACTATAATGGTACTACCT
TTGTTGTATATTGGCAAAATGATACATCTGGATATTTCAATGATATCAAG
AATTGGGTAAGTCCAGCTGATATGTAAATAATATCACAAACATTCCAATC
ATTTTATAAATTTTTTAAAAGNATTGGTA
Gap no gap
Contig length 629
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2759730
End point 2760360
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03159
List of clone(s) 

est1=CFD443E,1,630
Translated Amino Acid sequence 
lnynfqnkyllkkw*FKLTVVGVAAAIGIAAGVVSIGTTLVDKIKGFLPNNEADRKEVKY
LSFKDGQPTNGFRLILVNEKTGWNKAVRIYTNPGGADYQEVKAGDSTGTVCKGNMHLKYD
TKRVNFPTNKEYITLNLMKPGALGIYSTVDEIRIYKDKFADYNGTTFVVYWQNDTSGYFN
DIKNWVSPADM*iisqtfqsfykffkxig
Translated Amino Acid sequence (All Frames) 
Frame A:
ikl*fskqifikkmvvqinscrscrshryccwcs*ywnnisrqdqrfpsk**g**krs*i
fiiqrwstnkwf*tnsck*knwle*scsylhksrwc*lprgksw*fnwysl*r*yas*v*
y*ks*fpnk*gihyfesyetrcigyllnsrrn*nlqrqic*l*wyylccilak*yiwifq
*yqelgkss*yvnnitnipiil*if*kxw


Frame B:
lnynfqnkyllkkw*FKLTVVGVAAAIGIAAGVVSIGTTLVDKIKGFLPNNEADRKEVKY
LSFKDGQPTNGFRLILVNEKTGWNKAVRIYTNPGGADYQEVKAGDSTGTVCKGNMHLKYD
TKRVNFPTNKEYITLNLMKPGALGIYSTVDEIRIYKDKFADYNGTTFVVYWQNDTSGYFN
DIKNWVSPADM*iisqtfqsfykffkxig


Frame C:
*iiifktniy*kngssn*ql*elpqp*vlllv*lvleqh**trskvsfqimrliekklni
yhskmvnqqmvld*fl*mkklvgiklfvstqiqvvlitkr*klviqlvqfvkvicilsmi
lkelisqqirntll*il*nqvhwvftqq*tkleftktnlltimvlpllyigkmihldism
isrig*vqlick*yhkhsnhfinflkxlv
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03159-1 (Contig-U03159-1Q)
/CSM_Contig/Contig-U03159-1Q.Seq.d
         (629 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03159-1 (Contig-U03159-1Q) /CSM_Contig/Conti...  1199  0.0
Contig-U05910-1 (Contig-U05910-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U11789-1 (Contig-U11789-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12383-1 (Contig-U12383-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U11766-1 (Contig-U11766-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U11756-1 (Contig-U11756-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U11206-1 (Contig-U11206-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U09637-1 (Contig-U09637-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U05179-1 (Contig-U05179-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U12416-1 (Contig-U12416-1Q) /CSM_Contig/Conti...    34  0.17

>Contig-U03159-1 (Contig-U03159-1Q) /CSM_Contig/Contig-U03159-1Q.Seq.d
          Length = 629

 Score = 1199 bits (605), Expect = 0.0
 Identities = 622/629 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaattataattttcaaaacaaatatttattnnnnnnntggtagttcaaattaacagt 60
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 1   attaaattataattttcaaaacaaatatttattaaaaaaatggtagttcaaattaacagt 60

                                                                       
Query: 61  tgtaggagttgccgcagccataggtattgctgctggtgtagttagtattggaacaacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtaggagttgccgcagccataggtattgctgctggtgtagttagtattggaacaacatt 120

                                                                       
Query: 121 agtagacaagatcaaaggtttccttccaaataatgaggctgatagaaaagaagttaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtagacaagatcaaaggtttccttccaaataatgaggctgatagaaaagaagttaaata 180

                                                                       
Query: 181 tttatcattcaaagatggtcaaccaacaaatggttttagactaattcttgtaaatgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttatcattcaaagatggtcaaccaacaaatggttttagactaattcttgtaaatgaaaa 240

                                                                       
Query: 241 aactggttggaataaagctgttcgtatctacacaaatccaggtggtgctgattaccaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aactggttggaataaagctgttcgtatctacacaaatccaggtggtgctgattaccaaga 300

                                                                       
Query: 301 ggtaaaagctggtgattcaactggtacagtttgtaaaggtaatatgcatcttaagtatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtaaaagctggtgattcaactggtacagtttgtaaaggtaatatgcatcttaagtatga 360

                                                                       
Query: 361 tactaaaagagttaatttcccaacaaataaggaatacattactttgaatcttatgaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tactaaaagagttaatttcccaacaaataaggaatacattactttgaatcttatgaaacc 420

                                                                       
Query: 421 aggtgcattgggtatttactcaacagtagacgaaattagaatttacaaagacaaatttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggtgcattgggtatttactcaacagtagacgaaattagaatttacaaagacaaatttgc 480

                                                                       
Query: 481 tgactataatggtactacctttgttgtatattggcaaaatgatacatctggatatttcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgactataatggtactacctttgttgtatattggcaaaatgatacatctggatatttcaa 540

                                                                       
Query: 541 tgatatcaagaattgggtaagtccagctgatatgtaaataatatcacaaacattccaatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgatatcaagaattgggtaagtccagctgatatgtaaataatatcacaaacattccaatc 600

                                        
Query: 601 attttataaattttttaaaagnattggta 629
           |||||||||||||||||||||||||||||
Sbjct: 601 attttataaattttttaaaagnattggta 629


>Contig-U05910-1 (Contig-U05910-1Q) /CSM_Contig/Contig-U05910-1Q.Seq.d
          Length = 740

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 211 tggttttagactaattcttgtaaatgaaaaaactggttggaataaagc 258
           |||||||||| |||| ||||| || ||||| ||||| |||||||||||
Sbjct: 243 tggttttagattaatccttgttaacgaaaagactggatggaataaagc 290


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 452 gaaattagaatttacaaaga 471
           ||||||||||||||||||||
Sbjct: 484 gaaattagaatttacaaaga 503


>Contig-U11789-1 (Contig-U11789-1Q) /CSM_Contig/Contig-U11789-1Q.Seq.d
          Length = 1128

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 602 ttttataaattttttaaaa 620
           |||||||||||||||||||
Sbjct: 138 ttttataaattttttaaaa 156


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8570
Number of Sequences: 6905
Number of extensions: 8570
Number of successful extensions: 935
Number of sequences better than 10.0: 122
length of query: 629
length of database: 5,674,871
effective HSP length: 16
effective length of query: 613
effective length of database: 5,564,391
effective search space: 3410971683
effective search space used: 3410971683
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.26
Homology vs DNA 
Query= Contig-U03159-1 (Contig-U03159-1Q) /CSM_Contig/Contig-U03159-1Q.Seq.d
         (629 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ374336) Dictyostelium discoideum cDNA clone:ddc7f12, 3' e...  1156   0.0    2
(BJ360681) Dictyostelium discoideum cDNA clone:ddc7f12, 5' e...  1128   0.0    2
(AU268309) Dictyostelium discoideum vegetative cDNA clone:VS...    48   3e-11  4
(AU262743) Dictyostelium discoideum vegetative cDNA clone:VS...    48   4e-11  4
(C93143) Dictyostelium discoideum slug cDNA, clone SSM677.         48   6e-11  4
(C93226) Dictyostelium discoideum slug cDNA, clone SSM847.         40   0.004  3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.32   6
(AC179606) Strongylocentrotus purpuratus clone R3-1028P05, W...    46   0.62   4
(AC124958) Medicago truncatula clone mth2-18i11, complete se...    38   0.88   4
(AX346851) Sequence 1922 from Patent WO0200928.                    40   1.1    2
(AC144474) Medicago truncatula clone mth2-15l5, complete seq...    38   1.3    4
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   1.5    6
(AC158912) Mus musculus chromosome 5, clone RP23-131C17, com...    46   1.6    1
(AC124107) Mus musculus chromosome 5, clone RP24-317M4, comp...    46   1.6    1
(AY954171) Ranunculus gracilis voucher J.T. Johansson s.n. t...    46   1.6    1
(AY954170) Ranunculus psilostachys voucher J.T. Johansson 21...    46   1.6    1
(AY954169) Ranunculus sprunerianus voucher J.T. Johansson 23...    46   1.6    1
(AY954168) Ranunculus rumelicus voucher Snogerup 5993b trnK ...    46   1.6    1
(AY954167) Ranunculus cicutarius voucher H. Akhani 320156 tr...    46   1.6    1
(AY954166) Ranunculus millefoliatus voucher J.T. Johansson 2...    46   1.6    1
(AY954164) Ranunculus cupreus voucher E. Horandl 8666 trnK g...    46   1.6    1
(AY954163) Ranunculus creticus voucher E. Horandl 8518 trnK ...    46   1.6    1
(AY954162) Ranunculus illyricus voucher Lundgren s.n. trnK g...    46   1.6    1
(AY954161) Ranunculus bullatus voucher E. Horandl & W. Guter...    46   1.6    1
(AY954160) Ranunculus cortusifolius voucher J.T. Johansson 2...    46   1.6    1
(AY954159) Ranunculus gregarius voucher J.T. Johansson 232 t...    46   1.6    1
(AY954158) Ranunculus spicatus voucher J.T. Johansson s.n. t...    46   1.6    1
(AY954154) Ranunculus carpaticus voucher O. Paun s.n. trnK g...    46   1.6    1
(AY954153) Ranunculus villarsii voucher E. Horandl 664 trnK ...    46   1.6    1
(AY954152) Ranunculus pollinensis voucher E. Horandl 8247 tr...    46   1.6    1
(AY954151) Ranunculus gouanii voucher J.T. Johansson s.n. tr...    46   1.6    1
(AY954150) Ranunculus apenninus voucher E. Horandl 6069 trnK...    46   1.6    1
(AY954149) Ranunculus montanus voucher E. Horandl 666 trnK g...    46   1.6    1
(AY954148) Ranunculus sartorianus voucher J.T. Johansson 271...    46   1.6    1
(AY954146) Ranunculus pseudomontanus voucher E. Horandl 5904...    46   1.6    1
(AY954145) Ranunculus carinthiacus voucher E. Horandl 4096 t...    46   1.6    1
(AY954144) Ranunculus venetus voucher W. Gutermann & al. 353...    46   1.6    1
(AY954143) Ranunculus aduncus voucher E. Horandl 6818 trnK g...    46   1.6    1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    46   1.6    1
(AC008199) Drosophila melanogaster, chromosome 3R, region 94...    46   1.6    1
(AC129100) Rattus norvegicus clone CH230-1F9, *** SEQUENCING...    46   1.6    1
(AC122636) Rattus norvegicus clone CH230-202J22, *** SEQUENC...    46   1.6    1
(AC103314) Rattus norvegicus clone CH230-160G3, WORKING DRAF...    46   1.6    1
(AC099280) Rattus norvegicus clone CH230-67H19, WORKING DRAF...    46   1.6    1
(AP010210) Lotus japonicus genomic DNA, clone: LjT03E06, TM1...    46   1.6    1
(AC223135) Bos taurus clone CH240-428P3, WORKING DRAFT SEQUE...    46   1.6    1
(AC181321) Strongylocentrotus purpuratus clone R3-115E19, WO...    46   1.6    1
(AC170218) Bos taurus clone CH240-241P12, WORKING DRAFT SEQU...    46   1.6    1
(AC018030) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   1.6    1
(BC051059) Mus musculus phosphatidylinositol glycan anchor b...    46   1.6    1
(FI488250) CH322-89M09.x CHORI-322 Drosophila melanogaster g...    46   1.6    1
(CK602894) AGENCOURT_17895295 NIH_MGC_234 Rattus norvegicus ...    46   1.6    1
(CB728277) AMGNNUC:NRDG1-00063-A11-A nrdg1 (10855) Rattus no...    46   1.6    1
(BU563232) AGENCOURT_10277918 NIH_MGC_144 Mus musculus cDNA ...    46   1.6    1
(BQ947540) AGENCOURT_8955729 NCI_CGAP_Mam2 Mus musculus cDNA...    46   1.6    1
(AI174119) vz87f04.r1 Soares_mammary_gland_NbMMG Mus musculu...    46   1.6    1
(BF301075) 602029091F1 NCI_CGAP_SG2 Mus musculus cDNA clone ...    46   1.6    1
(BE998359) EST430082 GVSN Medicago truncatula cDNA clone pGV...    46   1.6    1
(FG448204) 010513KAFB001307HT (KAFB) Actinidia deliciosa bud...    46   1.6    1
(AV018462) Mus musculus 18-day embryo cDNA, partial sequence...    36   1.7    2
(CB855859) ri44h06.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    42   1.9    2
(BX640535) Zebrafish DNA sequence from clone DKEY-85K22 in l...    40   2.0    2
(CD418817) ri77e11.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    42   2.1    2
(AL591953) Mouse DNA sequence from clone RP23-381N9 on chrom...    40   2.1    4
(CB930144) ri71d03.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    42   2.3    2
(AC126023) Mus musculus BAC clone RP24-422I18 from chromosom...    44   2.5    2
(BX248506) Zebrafish DNA sequence from clone DKEY-70K11 in l...    40   2.9    2
(EX629693) 255458247 Pea aphid whole body normalized full le...    38   2.9    2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   3.3    8
(EK187848) 1095460007960 Global-Ocean-Sampling_GS-31-01-01-1...    38   3.5    2
(ET437610) Ea102F Edhazardia aedis pCR4Blunt-TOPO library Ed...    32   4.1    2
(CS468856) Sequence 47 from Patent EP1748080.                      32   4.2    4
(CS468855) Sequence 46 from Patent EP1748080.                      32   4.2    4
(CS419333) Sequence 47 from Patent WO2006094836.                   32   4.2    4
(CS419332) Sequence 46 from Patent WO2006094836.                   32   4.2    4
(BY429770) Mus musculus 17 days embryo kidney cDNA, RIKEN fu...    34   4.3    2
(AF176258) Reithrodontomys humulis cytochrome b (cytb) gene,...    42   4.5    2
(DB745108) Apis mellifera head cDNA, RIKEN full-length enric...    30   4.7    3
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   5.1    5
(AL109819) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    36   5.3    4
(AL109737) Arabidopsis thaliana DNA *** SEQUENCING IN PROGRE...    36   5.3    4
(AL139147) Human DNA sequence from clone RP4-598P13 on chrom...    44   5.5    4
(AC099199) Rattus norvegicus clone CH230-120L7, WORKING DRAF...    40   5.6    5
(AC147643) Mus musculus BAC clone RP23-35L23 from chromosome...    38   5.6    8
(AC183686) Pan troglodytes BAC clone CH251-209O13 from chrom...    36   5.7    4
(BX927275) Zebrafish DNA sequence from clone DKEY-108P14 in ...    44   6.4    1
(BV027026) S212P60130FG5.T0 CZECHII/Ei Mus musculus STS geno...    44   6.4    1
(CT030135) Mouse DNA sequence from clone RP23-356G2 on chrom...    44   6.4    1
(AC155265) Mus musculus BAC clone RP23-253O24 from chromosom...    44   6.4    1
(AC139244) Mus musculus BAC clone RP23-324J8 from 16, comple...    44   6.4    1
(AC206880) Pongo abelii BAC clone CH276-51O4 from chromosome...    44   6.4    1
(AC206355) Pongo abelii BAC clone CH276-439I18 from chromoso...    44   6.4    1
(AC233388) Solanum tuberosum chromosome 5 clone RH045L02, co...    44   6.4    1
(AC004238) Arabidopsis thaliana chromosome 2 clone F19I3 map...    44   6.4    1
(CQ592154) Sequence 19912 from Patent WO0171042.                   44   6.4    1
(CQ592151) Sequence 19909 from Patent WO0171042.                   44   6.4    1
(CQ592148) Sequence 19906 from Patent WO0171042.                   44   6.4    1
(AC150855) Bos taurus  BAC CH240-472P12 (Children's Hospital...    44   6.4    1
(CU467808) H.melpomene DNA sequence from clone AEHM-28L23.         44   6.4    1
(CU367882) H.melpomene DNA sequence from clone AEHM-11J7.          44   6.4    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    44   6.4    1
(AC099007) Drosophila melanogaster clone BACR16B07, complete...    44   6.4    1
(AC004313) Drosophila melanogaster (P1 DS02368 (D205)) DNA s...    44   6.4    1
(AC207063) Homo sapiens FOSMID clone ABC9-44005500G5 from ch...    44   6.4    1
(AC025436) Homo sapiens chromosome 5 clone CTC-429E15, compl...    44   6.4    1
(AC005754) Homo sapiens chromosome 5, BAC clone 34j15 (LBNL ...    44   6.4    1
(AC150789) Bos taurus clone CH240-423N21, WORKING DRAFT SEQU...    44   6.4    1
(CU693459) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.4    1
(CU466348) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.4    1
(AC232019) Solanum tuberosum chromosome 5 clone RH048J07, **...    44   6.4    1
(AC230507) Bos taurus clone CH240-506H18, WORKING DRAFT SEQU...    44   6.4    1
(AC224917) Bos taurus clone CH240-472P12, WORKING DRAFT SEQU...    44   6.4    1
(AC222172) Bos taurus clone CH240-411E17, WORKING DRAFT SEQU...    44   6.4    1
(AC221563) Bos taurus clone CH240-392A10, WORKING DRAFT SEQU...    44   6.4    1
(AC214046) Zea mays chromosome 10 clone CH201-374B1; ZMMBBc0...    44   6.4    1
(AC172653) Bos taurus clone CH240-257C13, WORKING DRAFT SEQU...    44   6.4    1
(AC018150) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   6.4    1
(AC008727) Homo sapiens chromosome 5 clone CTB-98D14, WORKIN...    44   6.4    1
(ER855552) PPTFG25TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   6.4    1
(ER804449) PPTCB58TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   6.4    1
(EK570881) 1095521077585 Global-Ocean-Sampling_GS-32-01-01-1...    44   6.4    1
(EJ401654) 1093012057870 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.4    1
(EI350886) GM_WBc0099H09.f GM_WBc Glycine max genomic clone ...    44   6.4    1
(CZ947267) 291180 Tomato EcoRI BAC Library Solanum lycopersi...    44   6.4    1
(CR838861) GR0AAA74AD06RM1 INRA BAC Bos taurus genomic clone...    44   6.4    1
(CR403072) Arabidopsis thaliana T-DNA flanking sequence GK-8...    44   6.4    1
(CC824627) ZMMBBb0168L14.r ZMMBBb Zea mays subsp. mays genom...    44   6.4    1
(CC372959) PUHLQ65TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.4    1
(CC372958) PUHLQ65TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.4    1
(DT717941) rscag0_005644 Zhikong scallop Chlamys farreri cha...    44   6.4    1
(GE448783) 294583775 Nasonia vitripennis Adult Female Nasoni...    44   6.4    1
(GE447960) 294581850 Nasonia vitripennis Adult Female Nasoni...    44   6.4    1
(GE428317) 294519249 Nasonia vitripennis Adult Male Nasonia ...    44   6.4    1
(GE425108) 294514784 Nasonia vitripennis Adult Male Nasonia ...    44   6.4    1
(GE406537) 293797155 Nasonia vitripennis Female Pupae Nasoni...    44   6.4    1
(GE401952) 293789027 Nasonia vitripennis Female Pupae Nasoni...    44   6.4    1
(GE399549) 293785105 Nasonia vitripennis Female Pupae Nasoni...    44   6.4    1
(GE397081) 293781073 Nasonia vitripennis Female Pupae Nasoni...    44   6.4    1
(GE373648) 292311779 Nasonia vitripennis Male Pupae Nasonia ...    44   6.4    1
(EW738512) RS3B317JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    44   6.4    1
(CR543861) Acinetobacter sp. ADP1 complete genome.                 44   6.4    1
(DX093830) AU_BAC002A2A03_T7 CHORI212 Ictalurus punctatus ge...    38   7.4    2
(AC171284) Bos taurus clone CH240-256K19, WORKING DRAFT SEQU...    42   8.5    4
(AC233422) Solanum tuberosum chromosome 5 clone RH072M12, **...    36   9.1    6
(AC004138) Arabidopsis thaliana chromosome 2 clone T17M13 ma...    36   9.4    6

>(BJ374336) Dictyostelium discoideum cDNA clone:ddc7f12, 3' end,
           single read.
          Length = 626

 Score = 1156 bits (583), Expect(2) = 0.0
 Identities = 588/589 (99%)
 Strand = Plus / Minus


Query: 41  tggtagttcaaattaacagttgtaggagttgccgcagccataggtattgctgctggtgta 100
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 590 tggtagttcaaattaacagttgtagnagttgccgcagccataggtattgctgctggtgta 531


Query: 101 gttagtattggaacaacattagtagacaagatcaaaggtttccttccaaataatgaggct 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gttagtattggaacaacattagtagacaagatcaaaggtttccttccaaataatgaggct 471


Query: 161 gatagaaaagaagttaaatatttatcattcaaagatggtcaaccaacaaatggttttaga 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gatagaaaagaagttaaatatttatcattcaaagatggtcaaccaacaaatggttttaga 411


Query: 221 ctaattcttgtaaatgaaaaaactggttggaataaagctgttcgtatctacacaaatcca 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctaattcttgtaaatgaaaaaactggttggaataaagctgttcgtatctacacaaatcca 351


Query: 281 ggtggtgctgattaccaagaggtaaaagctggtgattcaactggtacagtttgtaaaggt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggtggtgctgattaccaagaggtaaaagctggtgattcaactggtacagtttgtaaaggt 291


Query: 341 aatatgcatcttaagtatgatactaaaagagttaatttcccaacaaataaggaatacatt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aatatgcatcttaagtatgatactaaaagagttaatttcccaacaaataaggaatacatt 231


Query: 401 actttgaatcttatgaaaccaggtgcattgggtatttactcaacagtagacgaaattaga 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 actttgaatcttatgaaaccaggtgcattgggtatttactcaacagtagacgaaattaga 171


Query: 461 atttacaaagacaaatttgctgactataatggtactacctttgttgtatattggcaaaat 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 atttacaaagacaaatttgctgactataatggtactacctttgttgtatattggcaaaat 111


Query: 521 gatacatctggatatttcaatgatatcaagaattgggtaagtccagctgatatgtaaata 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gatacatctggatatttcaatgatatcaagaattgggtaagtccagctgatatgtaaata 51


Query: 581 atatcacaaacattccaatcattttataaattttttaaaagnattggta 629
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  atatcacaaacattccaatcattttataaattttttaaaagnattggta 2

 Score = 58.0 bits (29), Expect(2) = 0.0
 Identities = 29/29 (100%)
 Strand = Plus / Minus


Query: 5   aattataattttcaaaacaaatatttatt 33
           |||||||||||||||||||||||||||||
Sbjct: 626 aattataattttcaaaacaaatatttatt 598

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 829,602,607
Number of extensions: 51721459
Number of successful extensions: 4486714
Number of sequences better than 10.0: 145
Length of query: 629
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 605
Effective length of database: 99,340,224,878
Effective search space: 60100836051190
Effective search space used: 60100836051190
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.22
Homology vs Protein 
Query= Contig-U03159-1 (Contig-U03159-1Q) /CSM_Contig/Contig-U03159-1Q.Seq.d
         (629 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF203376_2(AF203376|pid:none) Staphylococcus aureus plasmid pSK1...    35   2.3
FN357348_7(FN357348|pid:none) Schistosoma mansoni genome sequenc...    35   2.3
CP000113_2484(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    34   3.9
EU962540_1(EU962540|pid:none) Zea mays clone 243558 gibberellin ...    33   6.7
CP001047_629(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    33   8.8

>AF203376_2(AF203376|pid:none) Staphylococcus aureus plasmid pSK1
           replication-associated protein (orf245) and replication
           initiation protein (rep) genes, complete cds.
           &AY182781_3(AY182781|pid:none)
           &AY182782_3(AY182782|pid:none)
           &AY182783_3(AY182783|pid:none)
          Length = 306

 Score = 34.7 bits (78), Expect = 2.3
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
 Frame = +2

Query: 224 ILVNEKTGWNKAVRIYTNPGGADYQEVKAGDSTGTVCKGNMHLKYDTKRVNFP-TNKEYI 400
           +++NE+ G NK  +IY                        +   YD + +N    NKE+I
Sbjct: 95  LIINERQGLNKPNKIYL-----------------------LEPTYDKELINSKFQNKEFI 131

Query: 401 TLNLMKPGALGIYSTVDEIRIYKDKFADYNGTTFVVYWQNDTSGYFNDIKNWVS 562
           +    K       S+V E+   K    D+N T ++    NDT+ Y ND  N +S
Sbjct: 132 SSRTNK-------SSVQELINSKSSDTDFNNTEYIETKNNDTN-YTNDTSNMIS 177

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 961,645,449
Number of extensions: 19512372
Number of successful extensions: 43795
Number of sequences better than 10.0: 5
Number of HSP's gapped: 43789
Number of HSP's successfully gapped: 5
Length of query: 209
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 86
Effective length of database: 653,084,107
Effective search space: 56165233202
Effective search space used: 56165233202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.93  gvh: 0.52  alm: 0.22  top: 0.47  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U03159-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0