| Contig-U15700-1 |
| Contig ID |
Contig-U15700-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
3460 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
4726945 |
| End point |
4730404 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
37 |
| Number of EST |
56 |
| Link to clone list |
U15700 |
| List of clone(s) |
est1=CHJ102F,1,693
est2=CHM864F,220,783
est3=CHN216F,291,842
est4=AHE889F,367,981
est5=CHJ786F,436,985
est6=CHF774F,471,934
est7=CHK320F,512,1157
est8=CHF431F,667,1307
est9=AHA670F,678,1277
est10=AHD178F,728,1282
est11=CHH395F,745,1385
est12=CHK601F,746,1287
est13=CHE706F,747,1438
est14=CHQ323F,761,1190
est15=CHL353F,805,1385
est16=CHM443F,931,1444
est17=CHL184F,1047,1582
est18=AHC356F,1069,1633
est19=CHH193F,1403,2009
est20=CFK477F,2010,2609
est21=CFK467F,2087,2715
est22=CHC608F,2092,2711
est23=CFH116E,2162,3406
est24=SLE846F,2229,2640
est25=AHE889Z,2666,3405
est26=SHA259Z,2668,3366
est27=AHD178Z,2672,3405
est28=CHN216Z,2672,3454
est29=AHA670Z,2673,3406
est30=CHL353Z,2673,3407
est31=SHE122Z,2674,3365
est32=CHQ323Z,2681,3428
est33=SHC120Z,2681,3434
est34=SHF283Z,2681,3367
est35=CHH193Z,2682,3363
est36=CHM864Z,2682,3407
est37=SHK194Z,2683,3409
est38=SHB601Z,2684,3404
est39=SHF548Z,2686,3368
est40=CHM443Z,2688,3363
est41=CHJ102Z,2718,3360
est42=CHM888Z,2721,3433
est43=SHK246Z,2737,3434
est44=SHB105Z,2744,3404
est45=CHE706Z,2762,3406
est46=SFI692Z,2764,3409
est47=SHC895Z,2767,3409
est48=CHF774Z,2786,3407
est49=CHF431Z,2791,3393
est50=SHB429Z,2814,3367
est51=AHC356Z,2816,3360
est52=CHJ786Z,2824,3364
est53=CHK320Z,2828,3406
est54=SLE846Z,2843,3463
est55=CHK601Z,2855,3403
est56=CHC608Z,3007,3363
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 2.10 |
| Homology vs DNA |
Query= Contig-U15700-1 (Contig-U15700-1Q) /CSM_Contig/Contig-U15700-1Q.Seq.d
(3470 letters)
Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 3983 0.0 1
(BJ383936) Dictyostelium discoideum cDNA clone:ddc47p16, 3' ... 1439 0.0 1
(BJ404293) Dictyostelium discoideum cDNA clone:dds28g05, 3' ... 1388 0.0 3
(BJ384084) Dictyostelium discoideum cDNA clone:ddc48o04, 3' ... 1380 0.0 3
(BJ366717) Dictyostelium discoideum cDNA clone:ddc40c01, 5' ... 1374 0.0 1
(BJ364281) Dictyostelium discoideum cDNA clone:ddc31l01, 5' ... 1372 0.0 1
(BJ382399) Dictyostelium discoideum cDNA clone:ddc44j13, 3' ... 1370 0.0 2
(BJ348248) Dictyostelium discoideum cDNA clone:dda32k18, 3' ... 1362 0.0 2
(BJ385207) Dictyostelium discoideum cDNA clone:ddc54n05, 3' ... 1334 0.0 3
(BJ392551) Dictyostelium discoideum cDNA clone:dds28g05, 5' ... 1316 0.0 1
(BJ403998) Dictyostelium discoideum cDNA clone:dds27a02, 3' ... 1298 0.0 3
(BJ408010) Dictyostelium discoideum cDNA clone:dds44k12, 3' ... 1294 0.0 2
(BJ367284) Dictyostelium discoideum cDNA clone:ddc42h05, 5' ... 1281 0.0 1
(BJ406296) Dictyostelium discoideum cDNA clone:dds34e22, 3' ... 1279 0.0 2
(BJ382924) Dictyostelium discoideum cDNA clone:ddc46f12, 3' ... 1277 0.0 2
(BJ406495) Dictyostelium discoideum cDNA clone:dds35o11, 3' ... 1271 0.0 2
(BJ365886) Dictyostelium discoideum cDNA clone:ddc36n23, 5' ... 1271 0.0 1
(BJ364643) Dictyostelium discoideum cDNA clone:ddc32n08, 5' ... 1271 0.0 1
(BJ402959) Dictyostelium discoideum cDNA clone:dds18g24, 3' ... 1267 0.0 1
(BJ396113) Dictyostelium discoideum cDNA clone:dds41l12, 5' ... 1267 0.0 1
(BJ381000) Dictyostelium discoideum cDNA clone:ddc40c01, 3' ... 1267 0.0 1
(BJ395856) Dictyostelium discoideum cDNA clone:dds40n11, 5' ... 1261 0.0 2
(BJ394512) Dictyostelium discoideum cDNA clone:dds35o11, 5' ... 1261 0.0 1
(BJ350705) Dictyostelium discoideum cDNA clone:dda40b24, 3' ... 1261 0.0 3
(BJ408160) Dictyostelium discoideum cDNA clone:dds44k23, 3' ... 1253 0.0 3
(BJ380058) Dictyostelium discoideum cDNA clone:ddc36i23, 3' ... 1253 0.0 2
(BJ349861) Dictyostelium discoideum cDNA clone:dda37k19, 3' ... 1253 0.0 3
(BJ362387) Dictyostelium discoideum cDNA clone:ddc21f18, 5' ... 1247 0.0 1
(BJ405569) Dictyostelium discoideum cDNA clone:dds32k05, 3' ... 1233 0.0 2
(BJ403258) Dictyostelium discoideum cDNA clone:dds24e16, 3' ... 1233 0.0 3
(BJ394352) Dictyostelium discoideum cDNA clone:dds34e22, 5' ... 1233 0.0 1
(AU039616) Dictyostelium discoideum slug cDNA, clone SLE846. 1231 0.0 1
(BJ363537) Dictyostelium discoideum cDNA clone:ddc27o02, 5' ... 1229 0.0 1
(BJ409727) Dictyostelium discoideum cDNA clone:dds42e01, 3' ... 1227 0.0 1
(BJ332766) Dictyostelium discoideum cDNA clone:dda40b24, 5' ... 1219 0.0 1
(BJ396909) Dictyostelium discoideum cDNA clone:dds44k12, 5' ... 1217 0.0 1
(BJ365862) Dictyostelium discoideum cDNA clone:ddc36i23, 5' ... 1203 0.0 1
(BJ378658) Dictyostelium discoideum cDNA clone:ddc32n08, 3' ... 1189 0.0 1
(BJ362458) Dictyostelium discoideum cDNA clone:ddc21j20, 5' ... 1189 0.0 1
(BJ330756) Dictyostelium discoideum cDNA clone:dda32k18, 5' ... 1189 0.0 1
(BJ391607) Dictyostelium discoideum cDNA clone:dds24e16, 5' ... 1187 0.0 1
(BJ393058) Dictyostelium discoideum cDNA clone:dds29n24, 5' ... 1168 0.0 2
(BJ404887) Dictyostelium discoideum cDNA clone:dds29n24, 3' ... 1162 0.0 2
(BJ372978) Dictyostelium discoideum cDNA clone:ddc15o03, 3' ... 1162 0.0 2
(BJ367878) Dictyostelium discoideum cDNA clone:ddc44j13, 5' ... 1152 0.0 1
(BJ382464) Dictyostelium discoideum cDNA clone:ddc44g21, 3' ... 1138 0.0 2
(BJ392096) Dictyostelium discoideum cDNA clone:dds26j08, 5' ... 1124 0.0 2
(BJ379098) Dictyostelium discoideum cDNA clone:ddc33d19, 3' ... 1124 0.0 2
(BJ331514) Dictyostelium discoideum cDNA clone:dda35p13, 5' ... 1120 0.0 1
(BJ403731) Dictyostelium discoideum cDNA clone:dds26i01, 3' ... 1100 0.0 4
(BJ368691) Dictyostelium discoideum cDNA clone:ddc47p16, 5' ... 1100 0.0 1
(BJ359523) Dictyostelium discoideum cDNA clone:ddc15o03, 5' ... 1100 0.0 2
(BJ368818) Dictyostelium discoideum cDNA clone:ddc48o04, 5' ... 1094 0.0 1
(BJ367237) Dictyostelium discoideum cDNA clone:ddc41l21, 5' ... 1082 0.0 1
(BJ381617) Dictyostelium discoideum cDNA clone:ddc42h05, 3' ... 1035 0.0 3
(BJ397057) Dictyostelium discoideum cDNA clone:dds44k23, 5' ... 1011 0.0 2
(BJ378491) Dictyostelium discoideum cDNA clone:ddc31l01, 3' ... 1005 0.0 2
(BJ349196) Dictyostelium discoideum cDNA clone:dda35p13, 3' ... 1074 0.0 1
(BJ382125) Dictyostelium discoideum cDNA clone:ddc43a02, 3' ... 987 0.0 2
(BJ367510) Dictyostelium discoideum cDNA clone:ddc43a02, 5' ... 1066 0.0 1
(BJ332007) Dictyostelium discoideum cDNA clone:dda37k19, 5' ... 1061 0.0 1
(BJ387459) Dictyostelium discoideum cDNA clone:dds2a20, 5' e... 1049 0.0 1
(BJ381558) Dictyostelium discoideum cDNA clone:ddc41l21, 3' ... 1049 0.0 1
(BJ367922) Dictyostelium discoideum cDNA clone:ddc44g21, 5' ... 1049 0.0 1
(BJ403815) Dictyostelium discoideum cDNA clone:dds26j08, 3' ... 1035 0.0 2
(BJ392026) Dictyostelium discoideum cDNA clone:dds26i01, 5' ... 1023 0.0 1
(BJ368343) Dictyostelium discoideum cDNA clone:ddc46f12, 5' ... 963 0.0 1
(BJ364996) Dictyostelium discoideum cDNA clone:ddc33d19, 5' ... 920 0.0 1
(BJ370453) Dictyostelium discoideum cDNA clone:ddc54n05, 5' ... 844 0.0 1
(AU061619) Dictyostelium discoideum slug cDNA, clone SLE846. 785 0.0 1
(BJ389458) Dictyostelium discoideum cDNA clone:dds18g24, 5' ... 494 0.0 2
(BJ396470) Dictyostelium discoideum cDNA clone:dds42e01, 5' ... 563 e-155 1
(BJ378097) Dictyostelium discoideum cDNA clone:ddc27o02, 3' ... 266 e-135 2
(BJ384020) Dictyostelium discoideum cDNA clone:ddc47p22, 3' ... 214 2e-62 2
(AM076231) Staphylococcus aureus partial sdrD gene for Ser-A... 48 0.071 2
(AM076207) Staphylococcus aureus partial sdrD gene for Ser-A... 48 0.071 2
(AM076206) Staphylococcus aureus partial sdrD gene for Ser-A... 48 0.071 2
(AC025580) Homo sapiens chromosome 15 clone RP11-519G16 map ... 50 0.57 1
(AC087791) Homo sapiens chromosome 15 clone RP11-519G16 map ... 50 0.57 1
(AA766861) oc87g09.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 50 0.57 1
(DT610538) ACAG-aab02h06.g1 Hydra_EST_UCI-9 Hydra magnipapil... 40 0.59 3
(ER598342) 1093016230898 Global-Ocean-Sampling_GS-36-01-01-2... 48 2.2 1
(ER585406) 1093015866766 Global-Ocean-Sampling_GS-36-01-01-2... 48 2.2 1
(ER309592) 1092343782504 Global-Ocean-Sampling_GS-34-01-01-1... 48 2.2 1
(EX505235) IC_EG1044A51eg1-044a-r_f05.esd.z EG1 Schistosoma ... 48 2.2 1
(AM076235) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076229) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076227) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076217) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076216) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076215) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076214) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076213) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076212) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076209) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AM076208) Staphylococcus aureus partial sdrD gene for Ser-A... 48 2.2 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 2.3 19
(AC220787) Bos taurus clone CH240-347C9, WORKING DRAFT SEQUE... 36 4.2 2
(AC164829) Bos taurus clone CH240-146J20, *** SEQUENCING IN ... 36 4.2 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 5.3 20
(ED777046) GM_WBb0154I04.r GM_WBb Glycine max genomic clone ... 34 6.9 3
(BX005199) Zebrafish DNA sequence from clone DKEY-12I13 in l... 46 8.9 1
(AC141480) Mus musculus BAC clone RP23-210I6 from chromosome... 46 8.9 1
(AC119802) Mus musculus chromosome 3, clone RP23-64P1, compl... 46 8.9 1
(AC161747) Rhinolophus ferrumequinum clone VMRC7-349N22, WOR... 46 8.9 1
(CU467572) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 8.9 1
(AC167327) Rhinolophus ferrumequinum clone VMRC7-230M21, WOR... 46 8.9 1
(FH530799) CHO_OF4794xl23r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 8.9 1
(ER603790) 1093016262351 Global-Ocean-Sampling_GS-36-01-01-2... 46 8.9 1
(ER555022) 1093016302914 Global-Ocean-Sampling_GS-35-01-01-1... 46 8.9 1
(EK026019) 1092955366620 Global-Ocean-Sampling_GS-31-01-01-1... 46 8.9 1
(DX248143) OR_ABa0134P16.r OR_ABa Oryza ridleyi genomic clon... 46 8.9 1
(DU049187) 149012 Tomato HindIII BAC Library Solanum lycoper... 46 8.9 1
(AM097739) Lutzomyia longipalpis EST clone SFM-05h05, sequen... 38 9.9 2
>(AC116956) Dictyostelium discoideum chromosome 2 map 1418423-1684967
strain AX4, complete sequence.
Length = 266544
Score = 3983 bits (2009), Expect = 0.0
Identities = 2009/2009 (100%)
Strand = Plus / Minus
Query: 1 aagctatcactggaattagattatcaatatatacaaagaatgtaacgaaaacagattcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179636 aagctatcactggaattagattatcaatatatacaaagaatgtaacgaaaacagattcaa 179577
Query: 61 atcttgacccaatgataaaggcacccttcattgatagaacattgaatgttggtattctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179576 atcttgacccaatgataaaggcacccttcattgatagaacattgaatgttggtattctaa 179517
Query: 121 aaccaccaatgtttagtattggtcataaagtttggtatgataccaataaaaatggtaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179516 aaccaccaatgtttagtattggtcataaagtttggtatgataccaataaaaatggtaaaa 179457
Query: 181 tcgatctaaaagaacaaccagcaccaaatgtaaccatttatctcaaacgtgcaaaagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179456 tcgatctaaaagaacaaccagcaccaaatgtaaccatttatctcaaacgtgcaaaagagg 179397
Query: 241 tcaactttgaatattcctttgatctctatggtaaacctatgatcgctaaaacaaatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179396 tcaactttgaatattcctttgatctctatggtaaacctatgatcgctaaaacaaatgaaa 179337
Query: 301 caggtgattattggatcaataatattccaccaggtctttacattgcaaaattctttccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179336 caggtgattattggatcaataatattccaccaggtctttacattgcaaaattctttccac 179277
Query: 361 caaatgatacaagattcaccattcaaatgaatgataatagtgcaaatgttttcggttctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179276 caaatgatacaagattcaccattcaaatgaatgataatagtgcaaatgttttcggttctt 179217
Query: 421 catatgcaatctatttgttctataaagttccaggtattcatccatacaatttaaaagttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179216 catatgcaatctatttgttctataaagttccaggtattcatccatacaatttaaaagttg 179157
Query: 481 atattggtgcggtgaatgcaagttatgtttactcaaaagttaatgcaggtttattaaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179156 atattggtgcggtgaatgcaagttatgtttactcaaaagttaatgcaggtttattaaaag 179097
Query: 541 gtttagttgatattcgtctttatgcagttagtggttatgtttacaacgataccaattcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179096 gtttagttgatattcgtctttatgcagttagtggttatgtttacaacgataccaattcca 179037
Query: 601 atggtattagagatcccggtgaaaatggtgttaatggtacaattgtaacattattggata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179036 atggtattagagatcccggtgaaaatggtgttaatggtacaattgtaacattattggata 178977
Query: 661 taaatggtaatacaatggttgatgctgattcttatccaattaattcatatacaacgggtc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178976 taaatggtaatacaatggttgatgctgattcttatccaattaattcatatacaacgggtc 178917
Query: 721 ctgatggatactataaattcgatgatttctcatttggtaaatatattataacatttagcg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178916 ctgatggatactataaattcgatgatttctcatttggtaaatatattataacatttagcg 178857
Query: 781 gtgtaccagatttaatctatcaattctataaaccagatgatcaacaacatttaaatcatt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178856 gtgtaccagatttaatctatcaattctataaaccagatgatcaacaacatttaaatcatt 178797
Query: 841 ccacactttcaaatataacaatttggtcaccagataatccaatggttgtaaatgcaacac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178796 ccacactttcaaatataacaatttggtcaccagataatccaatggttgtaaatgcaacac 178737
Query: 901 tcagtgatcatgtcaacgctcaatatattcttagagaacaaaataaaggtattattagag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178736 tcagtgatcatgtcaacgctcaatatattcttagagaacaaaataaaggtattattagag 178677
Query: 961 tgatcacttatgcaattggaggtaaggttataccagattttaaaaacacaacatataagg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178676 tgatcacttatgcaattggaggtaaggttataccagattttaaaaacacaacatataagg 178617
Query: 1021 atagtggttacgcgggtggtgctgttatagttcaattataccgtaacaattcaatagcaa 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178616 atagtggttacgcgggtggtgctgttatagttcaattataccgtaacaattcaatagcaa 178557
Query: 1081 cagatcttcgtggtaatccaataccatcggtattgaccaatgtattgactggtgaatatc 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178556 cagatcttcgtggtaatccaataccatcggtattgaccaatgtattgactggtgaatatc 178497
Query: 1141 ttttcgataatgtaccaatcttagagggttatcaagtaatgttttcaagtccaccaccag 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178496 ttttcgataatgtaccaatcttagagggttatcaagtaatgttttcaagtccaccaccag 178437
Query: 1201 gttggatttttgaaaagtatagaatcactcaaaccccattcattcaacttgatcttttac 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178436 gttggatttttgaaaagtatagaatcactcaaaccccattcattcaacttgatcttttac 178377
Query: 1261 catcattcaatttaccaaaatcaaatccaaaattaatagataagaaactttatccaaata 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178376 catcattcaatttaccaaaatcaaatccaaaattaatagataagaaactttatccaaata 178317
Query: 1321 tctttgcaacctatggtgtattggatcaagatactattatctcacccactctttttggaa 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178316 tctttgcaacctatggtgtattggatcaagatactattatctcacccactctttttggaa 178257
Query: 1381 ttggtaagaatacattcattgatgttgaaaatagtggtctcgaatcaatacctttaattc 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178256 ttggtaagaatacattcattgatgttgaaaatagtggtctcgaatcaatacctttaattc 178197
Query: 1441 cattagggggtgtagttgtaacactttacaatagtgtattcgaaagagtatttgatgcat 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178196 cattagggggtgtagttgtaacactttacaatagtgtattcgaaagagtatttgatgcat 178137
Query: 1501 ttggtaatttggttaaagagaaaaccacgggtgaagatggtgaatattcttttgaagacc 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178136 ttggtaatttggttaaagagaaaaccacgggtgaagatggtgaatattcttttgaagacc 178077
Query: 1561 tttactctggtcaatatattgttcattttggtttagttgaaggttattcattcactcaac 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178076 tttactctggtcaatatattgttcattttggtttagttgaaggttattcattcactcaac 178017
Query: 1621 agtatgctggaacagatcctgaaattgattcgaatgcaagtcctgtagatggttattcag 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178016 agtatgctggaacagatcctgaaattgattcgaatgcaagtcctgtagatggttattcag 177957
Query: 1681 aaatcattcaattagattcaatgaataatgaattgattttaataccattggaatctagaa 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177956 aaatcattcaattagattcaatgaataatgaattgattttaataccattggaatctagaa 177897
Query: 1741 acaacacattattctgtgatccaacaattgatggtggttatgtttcactctcacctcaag 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177896 acaacacattattctgtgatccaacaattgatggtggttatgtttcactctcacctcaag 177837
Query: 1801 gtttcattagtggtatgacatatattgattataatgctgatggtgtattcacaccaaatt 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177836 gtttcattagtggtatgacatatattgattataatgctgatggtgtattcacaccaaatt 177777
Query: 1861 cacgtgataaaccatatccaaatattacggtttcaatctacactggtgatgatagtagat 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177776 cacgtgataaaccatatccaaatattacggtttcaatctacactggtgatgatagtagat 177717
Query: 1921 tagttgcaaccgctcaaactgataagaaaggtttttactcattctcacatttattcatat 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177716 tagttgcaaccgctcaaactgataagaaaggtttttactcattctcacatttattcatat 177657
Query: 1981 ccactcaatatcaagttgttttctcaggt 2009
|||||||||||||||||||||||||||||
Sbjct: 177656 ccactcaatatcaagttgttttctcaggt 177628
Score = 1475 bits (744), Expect(2) = 0.0
Identities = 744/744 (100%)
Strand = Plus / Minus
Query: 2727 caaatggtgtttatcaattggagagtgctggtgtttgtggtgggttaattggtacaaatc 2786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176594 caaatggtgtttatcaattggagagtgctggtgtttgtggtgggttaattggtacaaatc 176535
Query: 2787 caatttcaattggtacaatgattgaacaaggaccaggtggtggtgaatttttcgatgaca 2846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176534 caatttcaattggtacaatgattgaacaaggaccaggtggtggtgaatttttcgatgaca 176475
Query: 2847 attttagtgatcgtgattggcaacatgatgaaaccacttggggttcttcatattatttac 2906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176474 attttagtgatcgtgattggcaacatgatgaaaccacttggggttcttcatattatttac 176415
Query: 2907 caggtagtggtgaagtcattggtggagcatacgatcttttatcaaccaatgaagcaattg 2966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176414 caggtagtggtgaagtcattggtggagcatacgatcttttatcaaccaatgaagcaattg 176355
Query: 2967 taaaacattggtcagtctataatggtcgtgttttatatggtttcattttaattcatggtg 3026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176354 taaaacattggtcagtctataatggtcgtgttttatatggtttcattttaattcatggtg 176295
Query: 3027 ctggtttagattatgttttcaataaagttaatggtttaggtgatatggatgcaaattgta 3086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176294 ctggtttagattatgttttcaataaagttaatggtttaggtgatatggatgcaaattgta 176235
Query: 3087 gattaccaaatacttatattggcaattacgtttggtatgatctaaataaaaatggtcttc 3146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176234 gattaccaaatacttatattggcaattacgtttggtatgatctaaataaaaatggtcttc 176175
Query: 3147 aagatccaaatgaaaaaggaatggcaaatattactgttcaattatttagtgccgctaatt 3206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176174 aagatccaaatgaaaaaggaatggcaaatattactgttcaattatttagtgccgctaatt 176115
Query: 3207 caacattcattaattcaactctaaccgattcctctggtaattacaatttccaagtcattt 3266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176114 caacattcattaattcaactctaaccgattcctctggtaattacaatttccaagtcattt 176055
Query: 3267 cagagtttaaatatagagttcatttcgttgctccaaaaggtttcacttattctcctatcg 3326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176054 cagagtttaaatatagagttcatttcgttgctccaaaaggtttcacttattctcctatcg 175995
Query: 3327 ttactgttagtagtgatcctaatgataaaagagatttggaaaaaatcaatagtttacctg 3386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175994 ttactgttagtagtgatcctaatgataaaagagatttggaaaaaatcaatagtttacctg 175935
Query: 3387 attcaaaaggtgacgcatatttctttgctaatggtaatggtgaaaatactcaagatattg 3446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175934 attcaaaaggtgacgcatatttctttgctaatggtaatggtgaaaatactcaagatattg 175875
Query: 3447 attgtggttttataagaatttaaa 3470
||||||||||||||||||||||||
Sbjct: 175874 attgtggttttataagaatttaaa 175851
Score = 1402 bits (707), Expect(2) = 0.0
Identities = 707/707 (100%)
Strand = Plus / Minus
Query: 2020 tctagtttaaattcaaaaacttcatcaactatctttaagaaatcattatcaacaggtgcc 2079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177300 tctagtttaaattcaaaaacttcatcaactatctttaagaaatcattatcaacaggtgcc 177241
Query: 2080 ctatcagcttatgtaaatttagcaacagttttaggttttgactttttagctccaaatggt 2139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177240 ctatcagcttatgtaaatttagcaacagttttaggttttgactttttagctccaaatggt 177181
Query: 2140 aaagtttatggtgattctcaaacctatcgtgtattatttggtgatttggatattattggt 2199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177180 aaagtttatggtgattctcaaacctatcgtgtattatttggtgatttggatattattggt 177121
Query: 2200 gattatatttgggttacaaatctttatagaaacattgtagttaaaataccattacgtcaa 2259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177120 gattatatttgggttacaaatctttatagaaacattgtagttaaaataccattacgtcaa 177061
Query: 2260 actccaactagagaaaacattaaattagtaaacatcactcataattgtggtccagatcca 2319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177060 actccaactagagaaaacattaaattagtaaacatcactcataattgtggtccagatcca 177001
Query: 2320 tttagaatctttggtttaggttataatggttccaatgtattcgttggtggtgtttgtgaa 2379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177000 tttagaatctttggtttaggttataatggttccaatgtattcgttggtggtgtttgtgaa 176941
Query: 2380 ggttcagtttcgaaggatataagaaatgtaattggtgtaattaaagtgattagctctgat 2439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176940 ggttcagtttcgaaggatataagaaatgtaattggtgtaattaaagtgattagctctgat 176881
Query: 2440 gaaacttcattctctgatgttttaacaattccaatgaattatccacgtggtcgtttacaa 2499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176880 gaaacttcattctctgatgttttaacaattccaatgaattatccacgtggtcgtttacaa 176821
Query: 2500 actagaatcatgtttttaaatgatatgacacccattttctcatcggttcaaaattcaaca 2559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176820 actagaatcatgtttttaaatgatatgacacccattttctcatcggttcaaaattcaaca 176761
Query: 2560 tggcaagtttggaatgatacagtgggtagttttaaacctcaaccacagataaccgatatt 2619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176760 tggcaagtttggaatgatacagtgggtagttttaaacctcaaccacagataaccgatatt 176701
Query: 2620 acattcattggcgatggtggtaatatggtaatatcaatgaaagatcgtgaagctgatagt 2679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176700 acattcattggcgatggtggtaatatggtaatatcaatgaaagatcgtgaagctgatagt 176641
Query: 2680 caaagtgttacgcctgcaggtgatatattaatggcatgtaaagattc 2726
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176640 caaagtgttacgcctgcaggtgatatattaatggcatgtaaagattc 176594
Score = 50.1 bits (25), Expect = 0.57
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 3111 attacgtttggtatgatctaaataaaaatggtcttcaagat 3151
|||| |||||||||||| ||||| ||||||||||||||||
Sbjct: 179921 attatgtttggtatgatataaattcaaatggtcttcaagat 179881
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 4,033,217,326
Number of extensions: 226468033
Number of successful extensions: 17395281
Number of sequences better than 10.0: 114
Length of query: 3470
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 3445
Effective length of database: 96,311,147,814
Effective search space: 331791904219230
Effective search space used: 331791904219230
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 7.17 |
| Homology vs Protein |
Query= Contig-U15700-1 (Contig-U15700-1Q) /CSM_Contig/Contig-U15700-1Q.Seq.d
(3470 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC... 148 1e-33
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 134 2e-29
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 134 2e-29
(Q8NXX6) RecName: Full=Serine-aspartate repeat-containing protei... 133 5e-29
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 126 5e-27
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 89 4e-25
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 120 5e-25
(Q9KI14) RecName: Full=Serine-aspartate repeat-containing protei... 110 5e-22
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 100 4e-19
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 100 4e-19
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 100 4e-19
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 100 4e-19
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD... 100 6e-19
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 94 5e-17
CP000830_3576(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 87 6e-15
(Q8KWM1) RecName: Full=Serine-aspartate repeat-containing protei... 82 1e-13
BX248360_56(BX248360|pid:none) Corynebacterium diphtheriae gravi... 80 7e-13
(O70022) RecName: Full=Fibrinogen-binding protein; Flags: Precur... 76 1e-11
CP000029_203(CP000029|pid:none) Staphylococcus epidermidis RP62A... 76 1e-11
CP000393_3058(CP000393|pid:none) Trichodesmium erythraeum IMS101... 75 2e-11
(O86489) RecName: Full=Serine-aspartate repeat-containing protei... 70 5e-10
(Q99W46) RecName: Full=Serine-aspartate repeat-containing protei... 70 5e-10
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 69 9e-10
(Q6GBS4) RecName: Full=Serine-aspartate repeat-containing protei... 69 1e-09
AJ938182_513(AJ938182|pid:none) Staphylococcus aureus RF122 comp... 69 1e-09
(Q6GJA6) RecName: Full=Bone sialoprotein-binding protein; ... 69 2e-09
Y18653_1(Y18653|pid:none) Staphylococcus aureus bbp gene, strain... 69 2e-09
AB252195_1(AB252195|pid:none) Staphylococcus aureus bbp gene for... 68 3e-09
(Q2FJ79) RecName: Full=Serine-aspartate repeat-containing protei... 66 1e-08
(Q7A781) RecName: Full=Serine-aspartate repeat-containing protei... 65 2e-08
BX294149_114(BX294149|pid:none) Rhodopirellula baltica SH 1 comp... 65 2e-08
CP000703_574(CP000703|pid:none) Staphylococcus aureus subsp. aur... 65 2e-08
(Q8NXX7) RecName: Full=Serine-aspartate repeat-containing protei... 64 3e-08
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 64 3e-08
CP000804_904(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 64 5e-08
CP000909_886(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 64 5e-08
(Q6GJA7) RecName: Full=Serine-aspartate repeat-containing protei... 62 1e-07
(Q4A0V8) RecName: Full=Uro-adherence factor A; Flags: Precursor;... 57 6e-06
CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,... 55 1e-05
AY458641_15(AY458641|pid:none) Uncultured marine bacterium 463 c... 55 1e-05
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 55 2e-05
AE1335(AE1335) probable peptidoglycan bound protein (LPXTG motif... 55 2e-05
AM076243_1(AM076243|pid:none) Staphylococcus aureus partial sdrE... 54 3e-05
AM076252_1(AM076252|pid:none) Staphylococcus aureus partial sdrE... 54 3e-05
AM076264_1(AM076264|pid:none) Staphylococcus aureus partial sdrE... 54 3e-05
AM076265_1(AM076265|pid:none) Staphylococcus aureus partial sdrE... 54 4e-05
AM076247_1(AM076247|pid:none) Staphylococcus aureus partial sdrE... 54 4e-05
AM076267_1(AM076267|pid:none) Staphylococcus aureus partial sdrE... 54 4e-05
AM076270_1(AM076270|pid:none) Staphylococcus aureus partial sdrE... 54 4e-05
AM076272_1(AM076272|pid:none) Staphylococcus aureus partial sdrE... 53 7e-05
BX294148_242(BX294148|pid:none) Rhodopirellula baltica SH 1 comp... 53 7e-05
CP000477_1653(CP000477|pid:none) Methanosaeta thermophila PT, co... 52 1e-04
CP001175_455(CP001175|pid:none) Listeria monocytogenes HCC23, co... 51 3e-04
AM746676_988(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 51 3e-04
AY714838_16(AY714838|pid:none) Uncultured archaeon GZfos1D1 clon... 50 8e-04
BX294136_39(BX294136|pid:none) Rhodopirellula baltica SH 1 compl... 50 8e-04
AE017262_2096(AE017262|pid:none) Listeria monocytogenes str. 4b ... 49 0.002
BX248360_28(BX248360|pid:none) Corynebacterium diphtheriae gravi... 49 0.002
FM242711_2075(FM242711|pid:none) Listeria monocytogenes Clip8145... 49 0.002
AP009486_65(AP009486|pid:none) Macrococcus caseolyticus JCSC5402... 49 0.002
CP000240_1202(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 48 0.002
CP000477_1257(CP000477|pid:none) Methanosaeta thermophila PT, co... 48 0.003
CP000239_181(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, comp... 46 0.008
AM913013_1(AM913013|pid:none) Uncultured bacterium partial integ... 46 0.008
CP000562_1858(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 44 0.032
CP000393_84(CP000393|pid:none) Trichodesmium erythraeum IMS101, ... 44 0.041
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr... 44 0.041
CP001287_944(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 44 0.054
AL939128_4(AL939128|pid:none) Streptomyces coelicolor A3(2) comp... 44 0.054
CP001338_98(CP001338|pid:none) Candidatus Methanosphaerula palus... 43 0.092
AP009552_1732(AP009552|pid:none) Microcystis aeruginosa NIES-843... 43 0.092
AM076153_1(AM076153|pid:none) Staphylococcus aureus partial sdrC... 41 0.27
AP009493_3556(AP009493|pid:none) Streptomyces griseus subsp. gri... 41 0.35
AF293969_5(AF293969|pid:none) Trichinella spiralis mitochondrion... 41 0.35
AM076184_1(AM076184|pid:none) Staphylococcus aureus partial sdrC... 40 0.46
AM076168_1(AM076168|pid:none) Staphylococcus aureus partial sdrC... 40 0.46
AM076193_1(AM076193|pid:none) Staphylococcus aureus partial sdrC... 40 0.46
AM076177_1(AM076177|pid:none) Staphylococcus aureus partial sdrC... 40 0.46
AM076169_1(AM076169|pid:none) Staphylococcus aureus partial sdrC... 40 0.46
(Q58791) RecName: Full=Uncharacterized protein MJ1396; &C64474(... 40 0.46
CP000578_403(CP000578|pid:none) Rhodobacter sphaeroides ATCC 170... 40 0.78
BA000030_4197(BA000030|pid:none) Streptomyces avermitilis MA-468... 40 0.78
CP000144_686(CP000144|pid:none) Rhodobacter sphaeroides 2.4.1 ch... 40 0.78
AJ582817_11(AJ582817|pid:none) Streptomyces kanamyceticus kanamy... 40 0.78
CP000473_12(CP000473|pid:none) Solibacter usitatus Ellin6076, co... 39 1.0
AL939118_189(AL939118|pid:none) Streptomyces coelicolor A3(2) co... 39 1.3
BA000030_1909(BA000030|pid:none) Streptomyces avermitilis MA-468... 39 1.3
CP001095_1213(CP001095|pid:none) Bifidobacterium longum subsp. i... 39 1.3
(P14893) RecName: Full=3 beta-hydroxysteroid dehydrogenase/Delta... 39 1.7
AM076174_1(AM076174|pid:none) Staphylococcus aureus partial sdrC... 39 1.7
AM076182_1(AM076182|pid:none) Staphylococcus aureus partial sdrC... 39 1.7
AP008955_4558(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 39 1.7
AY167585_1(AY167585|pid:none) Porcine epidemic diarrhea virus st... 38 2.3
CP001078_1195(CP001078|pid:none) Clostridium botulinum E3 str. A... 38 2.3
BX294134_125(BX294134|pid:none) Rhodopirellula baltica SH 1 comp... 38 2.3
DQ351536_1(DQ351536|pid:none) Mytilus californianus foot protein... 38 3.0
CP000081_523(CP000081|pid:none) Leishmania major chromosome 35, ... 37 3.9
AF500215_1(AF500215|pid:none) Porcine epidemic diarrhea virus sp... 37 3.9
AM494971_522(AM494971|pid:none) Leishmania braziliensis chromoso... 37 5.0
AY458632_21(AY458632|pid:none) Uncultured marine bacterium 311 c... 37 6.6
CP000885_2687(CP000885|pid:none) Clostridium phytofermentans ISD... 37 6.6
CP000117_365(CP000117|pid:none) Anabaena variabilis ATCC 29413, ... 37 6.6
CP001614_2402(CP001614|pid:none) Teredinibacter turnerae T7901, ... 36 8.6
(A1U2V8) RecName: Full=GTP-binding protein lepA; &CP000514_2219... 36 8.6
CP000685_4499(CP000685|pid:none) Flavobacterium johnsoniae UW101... 36 8.6
AE015924_71(AE015924|pid:none) Porphyromonas gingivalis W83, com... 36 8.6
CP000743_386(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 36 8.6
>CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC
33209, complete genome.
Length = 846
Score = 148 bits (374), Expect = 1e-33
Identities = 170/574 (29%), Positives = 230/574 (40%), Gaps = 16/574 (2%)
Frame = +3
Query: 330 PGLYIAKFFPPNDTRFTIQMNDNSANVFGSSYAIYLFYKVPGIHPYNLKVDIGAVNASYV 509
PG Y +F PN +FT + D +A+ K + P K D V A
Sbjct: 146 PGTYTVEFVAPNGQKFTTKGTDPAAD------------KDSNVDPATGKTDPVTVKAGDT 193
Query: 510 YSKVNAGLLKGLVDIRLYAVSGYVYNDTNSNGIRDPGENGVNGTIVTLLDINGNTMVDAD 689
+ ++AG+L A+ +V+ DTN NGI+D GE G+ G V LLD +G + +D
Sbjct: 194 NNTIDAGILP-----LPAALGDFVFEDTNGNGIQDAGEPGIAGVKVNLLDKDGKPVNGSD 248
Query: 690 SYPINSYTTGPDGYYKFDDFSFGKYIITFSGVPDLIYQFYKPDDQQHLNHSTLSNITIWS 869
P+ + TT +G Y F + G Y++ F G P+ Q T
Sbjct: 249 GQPLTT-TTYANGMYAFTNLLPGDYVVQFIG----------PEGQAFTTQGT-------D 290
Query: 870 PDNPMVVNATLSDHVNAQYILR--EQNKGI---IRVITYAIGGKVIPDFKNTTYKDSGYA 1034
P N NA SD A L+ E N I I IG V D K +D G
Sbjct: 291 PANGTDSNAG-SDGKTAPVTLKAGETNNSIDAGILPKPATIGDTVFEDSKGNGKQDDGEP 349
Query: 1035 G--GAVIVQLYRNNSIATDLRGNPIPSVLTNVLTGEYLFDNVPILEGYQVMFSSPPPGWI 1208
G G + + + ATDL GNP+P T+ G+Y F N+P + Y V F+ P
Sbjct: 350 GIAGLKVTLTKADGTPATDLLGNPVPEASTD-QDGKYSFTNLPAGD-YIVNFNKPDGQSF 407
Query: 1209 FEKYRITQTPFIQLDLLPSFNLPKSNPKLIDKKLYPNIFATYGVLDQDTIISPTLFGIGK 1388
K P D KS+ K+ K N G+L P +G
Sbjct: 408 TNK---GTDPAADKDSNADQATGKSD-KVTVKAGDTNNTIDAGIL-------PLPAALGD 456
Query: 1389 NTFIDVENSGLESIPLIPLGGVVVTLYNSVFERVFDAFGNLVKEKTTGEDGEYSFEDLYS 1568
F D +G++ L GV VTL + + D FG V TT +G+YSF L
Sbjct: 457 FVFEDTNGNGIQDAGEPGLAGVTVTLLDKDGKPANDQFGKPVPPVTTDANGKYSFAGLLP 516
Query: 1569 GQYIVHFGLVEGYSFTQQYAGTDP--EIDSNASPVDGYSEIIQLDSMNNELILIPLESRN 1742
G Y V + G SFT+Q GTDP DSN D ++ L E+ N
Sbjct: 517 GSYTVQVTVSAGQSFTKQ--GTDPASNTDSNTG----------TDGKTAQVTLKAGETNN 564
Query: 1743 NTLFCDPTIDGGYVSLSPQGFISGMTYIDYNADGVFTPNSRDKPYPNITVSIYTGDDS-- 1916
TID G L I + D N DG + P +TV++ D +
Sbjct: 565 -------TIDAGI--LPKPATIGDTVFTDNNGDG--KQGDNEPGTPGVTVNLLDKDGNPA 613
Query: 1917 -----RLVATAQTDKKGFYSFSHLFISTQYQVVF 2003
L+ TA TDK G YSF +L T Y V F
Sbjct: 614 KDQFGNLIPTATTDKAGKYSFGNLLPGT-YTVEF 646
Score = 147 bits (372), Expect = 2e-33
Identities = 185/666 (27%), Positives = 265/666 (39%), Gaps = 26/666 (3%)
Frame = +3
Query: 54 DSNLDPM--------IKAPFIDRTLNVGILKPPMFSIGHKVWYDTNKNGKIDLKEQPAPN 209
DSN+DP +KA + T++ GIL P ++G V+ DTN NG D E
Sbjct: 173 DSNVDPATGKTDPVTVKAGDTNNTIDAGILPLPA-ALGDFVFEDTNGNGIQDAGEPGIAG 231
Query: 210 VTIYL--KRAKEVNFEYSFDLYGKPMIAKTNETGDYWINNIPPGLYIAKFFPPNDTRFTI 383
V + L K K VN G+P+ T G Y N+ PG Y+ +F P FT
Sbjct: 232 VKVNLLDKDGKPVNGSD-----GQPLTTTTYANGMYAFTNLLPGDYVVQFIGPEGQAFTT 286
Query: 384 QMNDNSANVFGSSYAIYLFYKVPGIHPYNLKVDIGAVNASYVYSKVNAGLLKGLVDIRLY 563
Q D AN S+ P LK G N S ++AG+L +
Sbjct: 287 QGTD-PANGTDSNAG-----SDGKTAPVTLKA--GETNNS-----IDAGILP-----KPA 328
Query: 564 AVSGYVYNDTNSNGIRDPGENGVNGTIVTLLDINGNTMVDADSYPINSYTTGPDGYYKFD 743
+ V+ D+ NG +D GE G+ G VTL +G D P+ +T DG Y F
Sbjct: 329 TIGDTVFEDSKGNGKQDDGEPGIAGLKVTLTKADGTPATDLLGNPVPEASTDQDGKYSFT 388
Query: 744 DFSFGKYIITFSGVPDLIYQFYKPDDQQHLNHSTLSNITIWSPDNPMVVNATLSDHVNAQ 923
+ G YI+ F+ KPD Q N T P NA + + +
Sbjct: 389 NLPAGDYIVNFN----------KPDGQSFTNKGT-------DPAADKDSNADQATGKSDK 431
Query: 924 YILR--EQNKGI---IRVITYAIGGKVIPDFKNTTYKDSGYAG--GAVIVQLYRNNSIAT 1082
++ + N I I + A+G V D +D+G G G + L ++ A
Sbjct: 432 VTVKAGDTNNTIDAGILPLPAALGDFVFEDTNGNGIQDAGEPGLAGVTVTLLDKDGKPAN 491
Query: 1083 DLRGNPIPSVLTNVLTGEYLFDNVPILEGYQVMFSSPPPGWIFEKYRITQTPFIQLDLLP 1262
D G P+P V T+ G+Y F +L G + + G F K P
Sbjct: 492 DQFGKPVPPVTTDA-NGKYSF--AGLLPGSYTVQVTVSAGQSFTKQGTD----------P 538
Query: 1263 SFNLPKSNPKLIDKKLYPNIFATYGVLDQDTIISPTLFGIGKNTFIDVENSGLESIPLIP 1442
+ N SN K + A D I P IG F D G +
Sbjct: 539 ASN-TDSNTGTDGKTAQVTLKAGETNNTIDAGILPKPATIGDTVFTDNNGDGKQGDNEPG 597
Query: 1443 LGGVVVTLYNSVFERVFDAFGNLVKEKTTGEDGEYSFEDLYSGQYIVHFGLVEGYSFTQQ 1622
GV V L + D FGNL+ TT + G+YSF +L G Y V F G +F+ +
Sbjct: 598 TPGVTVNLLDKDGNPAKDQFGNLIPTATTDKAGKYSFGNLLPGTYTVEFVKPAGTAFSPK 657
Query: 1623 YAGTDP--EIDSNASPVDGYSEIIQLDSMNNELILIPLESRNNTLFCDPTIDGGYVSLSP 1796
GTDP + DSNA P G S+ + + + E+ N T+D G + L+
Sbjct: 658 --GTDPAADKDSNADPKTGKSDPVTVKAG---------ETNN-------TVDAGLIPLAT 699
Query: 1797 QG-FISGMTYIDYNADGVFTPNSRDKPYPNITVSIYTGDDSRLVA------TAQTDKKGF 1955
G F+ G D N +G+ PN + +TV++ D ++ T TD G
Sbjct: 700 LGDFVFG----DKNGNGIQDPN--ESGIAGVTVNLLDKDGKPVLGADGKPLTTVTDANGK 753
Query: 1956 YSFSHL 1973
Y+F+ L
Sbjct: 754 YTFTDL 759
Score = 119 bits (299), Expect = 6e-25
Identities = 160/577 (27%), Positives = 224/577 (38%), Gaps = 13/577 (2%)
Frame = +3
Query: 75 IKAPFIDRTLNVGILKPPMFSIGHKVWYDTNKNGKIDLKEQPAPNVTIYLKRAKEVNFEY 254
+KA + +++ GIL P +IG V+ D+ NGK D E + + L +A
Sbjct: 310 LKAGETNNSIDAGILPKPA-TIGDTVFEDSKGNGKQDDGEPGIAGLKVTLTKADGTP--- 365
Query: 255 SFDLYGKPMI-AKTNETGDYWINNIPPGLYIAKFFPPNDTRFTIQMNDNSANVFGSSYAI 431
+ DL G P+ A T++ G Y N+P G YI F P+ FT + D +A+
Sbjct: 366 ATDLLGNPVPEASTDQDGKYSFTNLPAGDYIVNFNKPDGQSFTNKGTDPAAD-------- 417
Query: 432 YLFYKVPGIHPYNLKVDIGAVNASYVYSKVNAGLLKGLVDIRLYAVSGYVYNDTNSNGIR 611
K K D V A + ++AG+L A+ +V+ DTN NGI+
Sbjct: 418 ----KDSNADQATGKSDKVTVKAGDTNNTIDAGILPLPA-----ALGDFVFEDTNGNGIQ 468
Query: 612 DPGENGVNGTIVTLLDINGNTMVDADSYPINSYTTGPDGYYKFDDFSFGKYII--TFSGV 785
D GE G+ G VTLLD +G D P+ TT +G Y F G Y + T S
Sbjct: 469 DAGEPGLAGVTVTLLDKDGKPANDQFGKPVPPVTTDANGKYSFAGLLPGSYTVQVTVSAG 528
Query: 786 PDLIYQFYKPDDQQHLNHSTLSNITIWSPDNPMVVNATLSDHVNAQYILR--EQNKGIIR 959
Q P N T D AQ L+ E N I
Sbjct: 529 QSFTKQGTDPASNTDSNTGT--------------------DGKTAQVTLKAGETNNTIDA 568
Query: 960 VIT---YAIGGKVIPDFKNTTYKDSGYAG--GAVIVQLYRNNSIATDLRGNPIPSVLTNV 1124
I IG V D + G G + L ++ + A D GN IP+ T+
Sbjct: 569 GILPKPATIGDTVFTDNNGDGKQGDNEPGTPGVTVNLLDKDGNPAKDQFGNLIPTATTDK 628
Query: 1125 LTGEYLFDNVPILEGYQVMFSSPPPGWIFEKYRITQTPFIQLDLLPSFNLPKSNPKLIDK 1304
G+Y F N +L G + P G F P D KS+P +
Sbjct: 629 -AGKYSFGN--LLPGTYTVEFVKPAGTAFSPKGTD--PAADKDSNADPKTGKSDPVTVKA 683
Query: 1305 KLYPNIFATYGVLDQDTIISPTLFGIGKNTFIDVENSGLESIPLIPLGGVVVTLYNSVFE 1484
T +D I TL G F D +G++ + GV V L + +
Sbjct: 684 G------ETNNTVDAGLIPLATL---GDFVFGDKNGNGIQDPNESGIAGVTVNLLDKDGK 734
Query: 1485 RVFDAFGNLVKEKTTGEDGEYSFEDLYSGQYIVHFGLVEGYSFTQQYAGTDPEI--DSNA 1658
V A G + T +G+Y+F DL G YIV F G F++Q GTDP DS A
Sbjct: 735 PVLGADGKPLTT-VTDANGKYTFTDLLPGSYIVEFVKPAGLVFSKQ--GTDPAASNDSKA 791
Query: 1659 SPVDGYSEIIQLDS-MNNELILIPLESRNNTLFCDPT 1766
G S ++ L + L+L+P S L T
Sbjct: 792 DVTIGRSGVVTLAAGGRTTLVLMPACSPLEILLASST 828
Score = 99.8 bits (247), Expect = 6e-19
Identities = 85/285 (29%), Positives = 129/285 (45%), Gaps = 8/285 (2%)
Frame = +3
Query: 33 TKNVTKTDSNLDP-------MIKAPFIDRTLNVGILKPPMFSIGHKVWYDTNKNGKIDLK 191
T + TDSN +KA + T++ GIL P +IG V+ D N +GK
Sbjct: 536 TDPASNTDSNTGTDGKTAQVTLKAGETNNTIDAGILPKPA-TIGDTVFTDNNGDGKQGDN 594
Query: 192 EQPAPNVTIYLKRAKEVNFEYSFDLYGKPM-IAKTNETGDYWINNIPPGLYIAKFFPPND 368
E P VT+ L + + + D +G + A T++ G Y N+ PG Y +F P
Sbjct: 595 EPGTPGVTVNLL---DKDGNPAKDQFGNLIPTATTDKAGKYSFGNLLPGTYTVEFVKPAG 651
Query: 369 TRFTIQMNDNSANVFGSSYAIYLFYKVPGIHPYNLKVDIGAVNASYVYSKVNAGLLKGLV 548
T F+ + D +A+ K P K D V A + V+AGL
Sbjct: 652 TAFSPKGTDPAAD------------KDSNADPKTGKSDPVTVKAGETNNTVDAGL----- 694
Query: 549 DIRLYAVSGYVYNDTNSNGIRDPGENGVNGTIVTLLDINGNTMVDADSYPINSYTTGPDG 728
I L + +V+ D N NGI+DP E+G+ G V LLD +G ++ AD P+ + T +G
Sbjct: 695 -IPLATLGDFVFGDKNGNGIQDPNESGIAGVTVNLLDKDGKPVLGADGKPLTT-VTDANG 752
Query: 729 YYKFDDFSFGKYIITFSGVPDLIYQFYKPDDQQHLNHSTLSNITI 863
Y F D G YI+ F L+ F K ++ + +++TI
Sbjct: 753 KYTFTDLLPGSYIVEFVKPAGLV--FSKQGTDPAASNDSKADVTI 795
Score = 62.0 bits (149), Expect = 1e-07
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Frame = +2
Query: 3089 LPNTYIGNYVWYDLNKNGLQDPNEKGMANITVQLFSAANSTFIN------STLTDSSGNY 3250
+P +G++V+ D N NG+QDPNE G+A +TV L + +T+TD++G Y
Sbjct: 695 IPLATLGDFVFGDKNGNGIQDPNESGIAGVTVNLLDKDGKPVLGADGKPLTTVTDANGKY 754
Query: 3251 NFQVISEFKYRVHFVAPKGFTYSPIVTVSSDPNDKR 3358
F + Y V FV P G +S T + ND +
Sbjct: 755 TFTDLLPGSYIVEFVKPAGLVFSKQGTDPAASNDSK 790
Score = 47.4 bits (111), Expect = 0.004
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Frame = +2
Query: 3104 IGNYVWYDLNKNGLQDPNEKGMANITVQLFSAANS-------TFINSTLTDSSGNYNFQV 3262
IG+ V+ D N +G Q NE G +TV L + I + TD +G Y+F
Sbjct: 577 IGDTVFTDNNGDGKQGDNEPGTPGVTVNLLDKDGNPAKDQFGNLIPTATTDKAGKYSFGN 636
Query: 3263 ISEFKYRVHFVAPKGFTYSPIVTVSSDPNDKRDLEKINSLPDS-KGDAYFFANGNGENTQ 3439
+ Y V FV P G +SP +DP +D N+ P + K D G NT
Sbjct: 637 LLPGTYTVEFVKPAGTAFSP---KGTDPAADKD---SNADPKTGKSDPVTVKAGETNNT- 689
Query: 3440 DIDCGFI 3460
+D G I
Sbjct: 690 -VDAGLI 695
Score = 46.6 bits (109), Expect = 0.006
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Frame = +2
Query: 3104 IGNYVWYDLNKNGLQDPNEKGMANITVQLF----SAANSTF---INSTLTDSSGNYNFQV 3262
+G++V+ D N NG+QD E G+A +TV L AN F + TD++G Y+F
Sbjct: 454 LGDFVFEDTNGNGIQDAGEPGLAGVTVTLLDKDGKPANDQFGKPVPPVTTDANGKYSFAG 513
Query: 3263 ISEFKYRVHFVAPKGFTYSPIVTVSSDPNDKRDLEKINSLPDSKGDAYFFANGNGENTQD 3442
+ Y V G +++ +DP D N+ D K G NT
Sbjct: 514 LLPGSYTVQVTVSAGQSFT---KQGTDPASNTD---SNTGTDGKTAQVTLKAGETNNT-- 565
Query: 3443 IDCGFI 3460
ID G +
Sbjct: 566 IDAGIL 571
Score = 39.3 bits (90), Expect = 1.0
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Frame = +2
Query: 3104 IGNYVWYDLNKNGLQDPNEKGMANITVQLFSAANSTF-------INSTLTDSSGNYNFQV 3262
IG+ V+ D NG QD E G+A + V L A + + TD G Y+F
Sbjct: 330 IGDTVFEDSKGNGKQDDGEPGIAGLKVTLTKADGTPATDLLGNPVPEASTDQDGKYSFTN 389
Query: 3263 ISEFKYRVHFVAPKGFTYSPIVTVSSDPNDKRDLEKINSLPDSKGDAYFFANGNGENTQD 3442
+ Y V+F P G +++ +DP +D + K D G+ NT
Sbjct: 390 LPAGDYIVNFNKPDGQSFT---NKGTDPAADKDSNADQA--TGKSDKVTVKAGDTNNT-- 442
Query: 3443 IDCGFI 3460
ID G +
Sbjct: 443 IDAGIL 448
Score = 36.2 bits (82), Expect = 8.6
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 6/161 (3%)
Frame = +3
Query: 1545 YSFEDLYSGQYIVHFGLVEGYSFTQQYAGTDP--EIDSNASPVDGYSE--IIQLDSMNNE 1712
++F DL G Y V F G FT + GTDP + DSN P G ++ ++ NN
Sbjct: 139 HTFTDLLPGTYTVEFVAPNGQKFTTK--GTDPAADKDSNVDPATGKTDPVTVKAGDTNNT 196
Query: 1713 LI--LIPLESRNNTLFCDPTIDGGYVSLSPQGFISGMTYIDYNADGVFTPNSRDKPYPNI 1886
+ ++PL + + T G G I+G+ + DG KP
Sbjct: 197 IDAGILPLPAALGDFVFEDTNGNGIQDAGEPG-IAGVKVNLLDKDG--------KP---- 243
Query: 1887 TVSIYTGDDSRLVATAQTDKKGFYSFSHLFISTQYQVVFSG 2009
G D + + T T G Y+F++L + Y V F G
Sbjct: 244 ----VNGSDGQPLTTT-TYANGMYAFTNL-LPGDYVVQFIG 278
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 6,010,355,488
Number of extensions: 135040570
Number of successful extensions: 341258
Number of sequences better than 10.0: 108
Number of HSP's gapped: 339481
Number of HSP's successfully gapped: 704
Length of query: 1156
Length of database: 1,051,180,864
Length adjustment: 140
Effective length of query: 1016
Effective length of database: 598,062,604
Effective search space: 607631605664
Effective search space used: 607631605664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
4 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
11 |
| SF (FL, S) |
1 |
| CH (FL, L) |
17 |
| CF (FL, S) |
3 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |