| Contig-U03117-1 |
| Contig ID |
Contig-U03117-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
543 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
3726961 |
| End point |
3727504 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U03117 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 9 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 5.26 |
| Homology vs DNA |
Query= Contig-U03117-1 (Contig-U03117-1Q) /CSM_Contig/Contig-U03117-1Q.Seq.d
(543 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ374017) Dictyostelium discoideum cDNA clone:ddc5k21, 3' e... 1076 0.0 1
(BJ376532) Dictyostelium discoideum cDNA clone:ddc28m21, 3' ... 765 0.0 2
(BJ376297) Dictyostelium discoideum cDNA clone:ddc21n24, 3' ... 771 0.0 2
(BJ382770) Dictyostelium discoideum cDNA clone:ddc45g22, 3' ... 650 0.0 2
(BJ373155) Dictyostelium discoideum cDNA clone:ddc15p23, 3' ... 656 0.0 2
(BJ375243) Dictyostelium discoideum cDNA clone:ddc18c01, 3' ... 694 0.0 2
(BJ343183) Dictyostelium discoideum cDNA clone:dda22d12, 3' ... 599 0.0 2
(BJ375387) Dictyostelium discoideum cDNA clone:ddc18d16, 3' ... 587 0.0 2
(BJ374057) Dictyostelium discoideum cDNA clone:ddc6g11, 3' e... 583 0.0 2
(BJ401947) Dictyostelium discoideum cDNA clone:dds19m21, 3' ... 656 0.0 2
(BJ347025) Dictyostelium discoideum cDNA clone:dda25k19, 3' ... 579 0.0 2
(BJ372961) Dictyostelium discoideum cDNA clone:ddc15k05, 3' ... 579 0.0 2
(BJ400325) Dictyostelium discoideum cDNA clone:dds9b24, 3' e... 575 0.0 2
(BJ344404) Dictyostelium discoideum cDNA clone:dda19m03, 3' ... 571 0.0 2
(BJ346610) Dictyostelium discoideum cDNA clone:dda24p11, 3' ... 563 0.0 2
(BJ376479) Dictyostelium discoideum cDNA clone:ddc28o14, 3' ... 571 0.0 2
(BJ375732) Dictyostelium discoideum cDNA clone:ddc19c20, 3' ... 561 0.0 2
(BJ344958) Dictyostelium discoideum cDNA clone:dda21j04, 3' ... 561 0.0 2
(BJ400603) Dictyostelium discoideum cDNA clone:dds13p19, 3' ... 611 0.0 2
(BJ373229) Dictyostelium discoideum cDNA clone:ddc2c11, 3' e... 557 0.0 2
(BJ400638) Dictyostelium discoideum cDNA clone:dds14j03, 3' ... 771 0.0 2
(BJ402151) Dictyostelium discoideum cDNA clone:dds20k18, 3' ... 551 0.0 2
(BJ376311) Dictyostelium discoideum cDNA clone:ddc28b04, 3' ... 571 0.0 2
(BJ376458) Dictyostelium discoideum cDNA clone:ddc28j14, 3' ... 509 0.0 2
(BJ342149) Dictyostelium discoideum cDNA clone:dda9o16, 3' e... 507 0.0 2
(BJ339766) Dictyostelium discoideum cDNA clone:dda10e11, 3' ... 507 0.0 2
(BJ374781) Dictyostelium discoideum cDNA clone:ddc16b11, 3' ... 484 0.0 2
(BJ374942) Dictyostelium discoideum cDNA clone:ddc16j20, 3' ... 559 0.0 3
(BJ374586) Dictyostelium discoideum cDNA clone:ddc9g06, 3' e... 383 0.0 3
(BJ399958) Dictyostelium discoideum cDNA clone:dds8n03, 3' e... 476 0.0 2
(BJ340419) Dictyostelium discoideum cDNA clone:dda2c05, 3' e... 462 0.0 2
(BJ341473) Dictyostelium discoideum cDNA clone:dda6f24, 3' e... 450 0.0 2
(BJ377656) Dictyostelium discoideum cDNA clone:ddc25c09, 3' ... 448 0.0 2
(BJ403013) Dictyostelium discoideum cDNA clone:dds18d05, 3' ... 448 0.0 2
(BJ402951) Dictyostelium discoideum cDNA clone:dds18f20, 3' ... 389 0.0 3
(BJ371850) Dictyostelium discoideum cDNA clone:ddc10b02, 3' ... 448 0.0 2
(BJ402950) Dictyostelium discoideum cDNA clone:dds18f19, 3' ... 428 0.0 2
(BJ372865) Dictyostelium discoideum cDNA clone:ddc14j13, 3' ... 440 0.0 2
(BJ377933) Dictyostelium discoideum cDNA clone:ddc26p11, 3' ... 414 0.0 2
(BJ377177) Dictyostelium discoideum cDNA clone:ddc22i23, 3' ... 543 0.0 4
(BJ400587) Dictyostelium discoideum cDNA clone:dds13k19, 3' ... 410 0.0 2
(BJ400289) Dictyostelium discoideum cDNA clone:dds9i17, 3' e... 404 0.0 2
(BJ398552) Dictyostelium discoideum cDNA clone:dds12k22, 3' ... 392 0.0 2
(BJ376786) Dictyostelium discoideum cDNA clone:ddc29m20, 3' ... 400 0.0 3
(BJ398163) Dictyostelium discoideum cDNA clone:dds11e07, 3' ... 418 0.0 2
(BJ399967) Dictyostelium discoideum cDNA clone:dds8a08, 3' e... 361 0.0 2
(BJ401640) Dictyostelium discoideum cDNA clone:dds23n19, 3' ... 430 e-179 2
(BJ377371) Dictyostelium discoideum cDNA clone:ddc24f08, 3' ... 367 e-176 2
(BJ400042) Dictyostelium discoideum cDNA clone:dds8h13, 3' e... 353 e-170 2
(BJ400244) Dictyostelium discoideum cDNA clone:dds9l11, 3' e... 315 e-169 3
(BJ399387) Dictyostelium discoideum cDNA clone:dds5p14, 3' e... 315 e-157 2
(BJ399045) Dictyostelium discoideum cDNA clone:dds3g19, 3' e... 315 e-151 2
(BJ398893) Dictyostelium discoideum cDNA clone:dds3a01, 3' e... 315 e-149 3
(BJ399463) Dictyostelium discoideum cDNA clone:dds6i04, 3' e... 297 e-146 2
(BJ376877) Dictyostelium discoideum cDNA clone:ddc30l09, 3' ... 311 e-145 2
(BJ398605) Dictyostelium discoideum cDNA clone:dds1n05, 3' e... 315 e-142 2
(BJ402248) Dictyostelium discoideum cDNA clone:dds20p20, 3' ... 315 e-142 2
(AU072893) Dictyostelium discoideum slug cDNA, clone SSF334. 470 e-128 1
(AU034337) Dictyostelium discoideum slug cDNA, clone SLC712. 315 e-112 4
(BJ342387) Dictyostelium discoideum cDNA clone:dda13c22, 3' ... 287 e-108 2
(BJ341844) Dictyostelium discoideum cDNA clone:dda8m10, 3' e... 396 e-106 1
(BJ402517) Dictyostelium discoideum cDNA clone:dds17n05, 3' ... 315 1e-81 1
(BJ402263) Dictyostelium discoideum cDNA clone:dds16d01, 3' ... 315 1e-81 1
(BJ400452) Dictyostelium discoideum cDNA clone:dds13i07, 3' ... 303 4e-78 1
(BJ389948) Dictyostelium discoideum cDNA clone:dds20k18, 5' ... 295 9e-76 1
(BJ342968) Dictyostelium discoideum cDNA clone:dda15j13, 3' ... 287 2e-73 1
(BJ374704) Dictyostelium discoideum cDNA clone:ddc9o21, 3' e... 268 2e-70 3
(BJ342129) Dictyostelium discoideum cDNA clone:dda9k13, 3' e... 248 3e-70 2
(BJ340336) Dictyostelium discoideum cDNA clone:dda12l14, 3' ... 141 7e-62 2
(C92779) Dictyostelium discoideum slug cDNA, clone SSF334. 238 2e-58 1
(BJ398120) Dictyostelium discoideum cDNA clone:dds11g01, 3' ... 220 4e-53 1
(BJ361736) Dictyostelium discoideum cDNA clone:ddc18d16, 5' ... 155 2e-33 1
(BJ388168) Dictyostelium discoideum cDNA clone:dds8a08, 5' e... 145 2e-30 1
(FC529744) CBPB5068.rev CBPB Thalassiosira pseudonana RNA fr... 48 0.35 1
(FC516220) CBFS959.rev CBFS Thalassiosira pseudonana silicat... 48 0.35 1
(FC513937) CBFS4593.rev CBFS Thalassiosira pseudonana silica... 48 0.35 1
(FC512358) CBFS3490.rev CBFS Thalassiosira pseudonana silica... 48 0.35 1
(FC510053) CBFS1876.rev CBFS Thalassiosira pseudonana silica... 48 0.35 1
(X78948) D.minutum ecmB gene. 46 1.4 1
(AC116955) Dictyostelium discoideum chromosome 2 map 5455881... 46 1.4 1
(CG386518) ZMMBBb0241P02.f ZMMBBb Zea mays subsp. mays genom... 46 1.4 1
(BJ390802) Dictyostelium discoideum cDNA clone:dds23d20, 5' ... 40 1.6 2
(ER497366) 1093015353605 Global-Ocean-Sampling_GS-35-01-01-1... 32 2.6 3
(ER609681) 1093016300549 Global-Ocean-Sampling_GS-36-01-01-2... 34 2.6 2
(BX284625) Zebrafish DNA sequence from clone DKEYP-55F12 in ... 32 2.8 2
(AC023299) Homo sapiens chromosome 15 clone RP11-640I2 map 1... 36 3.4 3
(CT765104) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 5.5 1
(AJ538032) Timarcha balearica EST, clone Timarcha6E5. 44 5.5 1
(AJ537992) Timarcha balearica EST, clone Timarcha6A3. 44 5.5 1
(AJ537978) Timarcha balearica EST, clone Timarcha5G8. 44 5.5 1
(AJ537965) Timarcha balearica EST, clone Timarcha5F6. 44 5.5 1
(AJ537958) Timarcha balearica EST, clone Timarcha5E10. 44 5.5 1
(AJ537906) Timarcha balearica EST, clone Timarcha4H12. 44 5.5 1
(AJ537839) Timarcha balearica EST, clone Timarcha4C2. 44 5.5 1
(AJ537754) Timarcha balearica EST, clone Timarcha3A7. 44 5.5 1
(AJ537661) Timarcha balearica EST, clone Timarcha1F10. 44 5.5 1
(AJ537616) Timarcha balearica EST, clone Timarcha1A7. 44 5.5 1
(CN230779) WLB040C07.ab1 WLtestis Gallus gallus cDNA 5', mRN... 36 6.6 2
(CD218280) pgr1n.pk006.f21 Normalized chicken reproductive t... 36 8.2 2
(EJ731100) 1092960145383 Global-Ocean-Sampling_GS-30-02-01-1... 36 8.4 2
(BU248365) 603781766F1 CSEQCHN34 Gallus gallus cDNA clone Ch... 36 8.6 2
(BU305053) 603736003F1 CSEQCHN56 Gallus gallus cDNA clone Ch... 36 8.8 2
(CV857895) gonad_EST05371 Embryonic gonad cDNA Library Gallu... 36 9.7 2
>(BJ374017) Dictyostelium discoideum cDNA clone:ddc5k21, 3' end,
single read.
Length = 544
Score = 1076 bits (543), Expect = 0.0
Identities = 543/543 (100%)
Strand = Plus / Minus
Query: 1 ttggtaaaaatgatacgtgttgctttgtaaataaatgtgaaaccattaatagatgtttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttggtaaaaatgatacgtgttgctttgtaaataaatgtgaaaccattaatagatgtttag 485
Query: 61 aagctgactgtaatgaaggaaccaatttccaatgtgattaccatataaagaattgtagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagctgactgtaatgaaggaaccaatttccaatgtgattaccatataaagaattgtagtg 425
Query: 121 atggtgatatttgttcaactgatggttgtgatattggttttggatgtattaatttaccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atggtgatatttgttcaactgatggttgtgatattggttttggatgtattaatttaccta 365
Query: 181 taaactgtgatgatggaaattattgtactaaagattattgtgatccaacatatggatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taaactgtgatgatggaaattattgtactaaagattattgtgatccaacatatggatgtt 305
Query: 241 tacatatcgaaactgcaaattgcactgaatgtttagaaacaggttgtataactgttctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tacatatcgaaactgcaaattgcactgaatgtttagaaacaggttgtataactgttctcc 245
Query: 301 catgtttcccagtaacatgtgacagtttaaatagtagccactgtgttgctagtgctatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 catgtttcccagtaacatgtgacagtttaaatagtagccactgtgttgctagtgctatga 185
Query: 361 attgctcagataacgatccatgtacatcacgtttcccaactgatacaccaactaatacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 attgctcagataacgatccatgtacatcacgtttcccaactgatacaccaactaatacac 125
Query: 421 caatgccaccaacccgtcctccaactccaactgaagatccaaagatctatgaagatccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 caatgccaccaacccgtcctccaactccaactgaagatccaaagatctatgaagatccag 65
Query: 481 aagatttagataaagattgtttacattgtaaagatttaggttgcatactaactggtaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aagatttagataaagattgtttacattgtaaagatttaggttgcatactaactggtaaaa 5
Query: 541 gtt 543
|||
Sbjct: 4 gtt 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 606,518,202
Number of extensions: 32954509
Number of successful extensions: 2511406
Number of sequences better than 10.0: 103
Length of query: 543
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 520
Effective length of database: 99,442,330,388
Effective search space: 51710011801760
Effective search space used: 51710011801760
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.22 |
| Homology vs Protein |
Query= Contig-U03117-1 (Contig-U03117-1Q) /CSM_Contig/Contig-U03117-1Q.Seq.d
(543 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 301 9e-81
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 122 8e-27
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 94 2e-18
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 91 3e-17
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 86 8e-16
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 86 8e-16
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 85 1e-15
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 84 2e-15
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 79 1e-13
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 70 3e-11
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 69 1e-10
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 67 4e-10
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 52 1e-05
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 51 2e-05
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 51 2e-05
BC055626_1(BC055626|pid:none) Danio rerio cysteine-rich with EGF... 48 2e-04
Y12539_1(Y12539|pid:none) Branchiostoma floridae mRNA for putati... 48 2e-04
CP000113_6294(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 47 3e-04
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 46 5e-04
AM746676_2014(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 46 7e-04
(Q66PY1) RecName: Full=Signal peptide, CUB and EGF-like domain-c... 45 0.001
BC079849_1(BC079849|pid:none) Mus musculus signal peptide, CUB d... 45 0.001
CR933357_1(CR933357|pid:none) Mini antigen, Paramecium tetraurel... 43 0.005
AP008215_740(AP008215|pid:none) Oryza sativa (japonica cultivar-... 42 0.008
AP005419_8(AP005419|pid:none) Oryza sativa Japonica Group genomi... 42 0.008
AF374376_24(AF374376|pid:none) Oikopleura dioica clone BAC clone... 42 0.008
BC052263_1(BC052263|pid:none) Homo sapiens signal peptide, CUB d... 42 0.008
FJ501956_1(FJ501956|pid:none) Oryza sativa Indica Group keratin ... 42 0.008
AK092062_1(AK092062|pid:none) Homo sapiens cDNA FLJ34743 fis, cl... 42 0.008
(Q8IX30) RecName: Full=Signal peptide, CUB and EGF-like domain-c... 42 0.008
CP000099_1162(CP000099|pid:none) Methanosarcina barkeri str. Fus... 41 0.017
AL844504_47(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 41 0.023
AL929351_47(AL929351|pid:none) Plasmodium falciparum strain 3D7,... 41 0.023
EU072820_1(EU072820|pid:none) Drosophila americana isolate IR04.... 41 0.023
EU072824_1(EU072824|pid:none) Drosophila americana isolate IR04.... 41 0.023
BX510920_1(BX510920|pid:none) Zebrafish DNA sequence from clone ... 40 0.030
AF097183_1(AF097183|pid:none) Cryptosporidium parvum HC-10 gene,... 40 0.039
AM050637_1(AM050637|pid:none) Blattella germanica mRNA for vitel... 40 0.051
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 39 0.087
(P35555) RecName: Full=Fibrillin-1; Flags: Precursor; &L13923_1... 39 0.087
X63556_1(X63556|pid:none) H.sapiens mRNA for fibrillin. 39 0.087
AB177802_1(AB177802|pid:none) Homo sapiens FBN1 gene for fibrill... 39 0.087
AL844509_589(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.088
AJ249165_1(AJ249165|pid:none) Plasmodium falciparum gc-beta gene... 39 0.088
CP000113_6723(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 39 0.11
CP001576_227(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 38 0.15
AF007248_1(AF007248|pid:none) Mus musculus mutant fibrillin-1 (F... 38 0.15
AB190303_1(AB190303|pid:none) Achaearanea tepidariorum Atcad mRN... 38 0.15
AF135059_1(AF135059|pid:none) Rattus norvegicus fibrillin-1 mRNA... 38 0.15
(O35568) RecName: Full=EGF-containing fibulin-like extracellular... 38 0.15
AL844547_6(AL844547|pid:none) Mouse DNA sequence from clone RP23... 38 0.15
AM746676_2642(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 38 0.19
EF125736_1(EF125736|pid:none) Nyctotherus ovalis hypothetical pr... 38 0.19
U19972_1(U19972|pid:none) Mus musculus fibrillin-1 mRNA, partial... 38 0.19
(Q03185) RecName: Full=Major surface trophozoite antigen 11; Fla... 38 0.19
AB209212_1(AB209212|pid:none) Homo sapiens mRNA for EGF-containi... 37 0.25
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 37 0.25
CR940348_368(CR940348|pid:none) Theileria annulata strain Ankara... 37 0.25
T25768(T25768)hypothetical protein F46F11.7 - Caenorhabditis ele... 37 0.25
U88173_9(U88173|pid:none) Caenorhabditis elegans cosmid F46F11, ... 37 0.25
(Q12805) RecName: Full=EGF-containing fibulin-like extracellular... 37 0.33
BC031184_1(BC031184|pid:none) Mus musculus epidermal growth fact... 37 0.33
(Q9WVH8) RecName: Full=Fibulin-5; Short=FIBL-5; AltName... 37 0.33
AK312639_1(AK312639|pid:none) Homo sapiens cDNA, FLJ93024, highl... 37 0.33
AB299015_1(AB299015|pid:none) Haemaphysalis longicornis mRNA for... 37 0.33
(Q9WVH9) RecName: Full=Fibulin-5; Short=FIBL-5; AltName... 37 0.33
AY185605_1(AY185605|pid:none) Mus musculus EGF containing fibuli... 37 0.33
(Q7YQD7) RecName: Full=EGF-containing fibulin-like extracellular... 37 0.33
CS161054_1(CS161054|pid:none) Sequence 13 from Patent WO20050831... 37 0.33
AY842505_1(AY842505|pid:none) Entamoeba histolytica beta 1 integ... 37 0.33
AK092854_1(AK092854|pid:none) Homo sapiens cDNA FLJ35535 fis, cl... 37 0.33
(Q8BPB5) RecName: Full=EGF-containing fibulin-like extracellular... 37 0.33
I38449(I38449) extracellular protein - human &U03877_1(U03877|p... 37 0.33
AK035388_1(AK035388|pid:none) Mus musculus adult male urinary bl... 37 0.43
AK159646_1(AK159646|pid:none) Mus musculus osteoclast-like cell ... 37 0.43
BC151354_1(BC151354|pid:none) Bos taurus latent transforming gro... 37 0.43
AX647605_1(AX647605|pid:none) Sequence 1797 from Patent EP1270724. 37 0.43
AF214523_1(AF214523|pid:none) Drosophila melanogaster SP460 mRNA... 37 0.43
CS208045_1(CS208045|pid:none) Sequence 54 from Patent WO20050798... 37 0.43
S78040(S78040;S78560;S36440)fibulin, splice form C precursor - m... 37 0.43
FJ039902_1(FJ039902|pid:none) Triticum aestivum DEP1 (DEP1) mRNA... 37 0.43
AY333070_3(AY333070|pid:none) Drosophila virilis antennapedia (A... 37 0.43
AL389894_19(AL389894|pid:none) Leishmania major Friedlin chromos... 36 0.56
AY331704_1(AY331704|pid:none) Crassostrea virginica metallothion... 36 0.56
CR925810_1(CR925810|pid:none) Zebrafish DNA sequence from clone ... 36 0.56
AL389894_18(AL389894|pid:none) Leishmania major Friedlin chromos... 36 0.56
BC161973_1(BC161973|pid:none) Rattus norvegicus fibulin 1, mRNA ... 36 0.56
AM502222_19(AM502222|pid:none) Leishmania infantum chromosome 4. 36 0.73
(A2ARV4) RecName: Full=Low-density lipoprotein receptor-related ... 36 0.73
AM502222_18(AM502222|pid:none) Leishmania infantum chromosome 4. 36 0.73
EU974210_1(EU974210|pid:none) Zea mays clone 442907 keratin-asso... 36 0.73
(Q63772) RecName: Full=Growth arrest-specific protein 6; ... 36 0.73
A35844(A35844)Xotch protein - African clawed frog 36 0.73
(P21783) RecName: Full=Neurogenic locus notch protein homolog; ... 36 0.73
(Q9BYQ7) RecName: Full=Keratin-associated protein 4-1; AltName: ... 36 0.73
AF135060_1(AF135060|pid:none) Rattus norvegicus fibrillin-2 mRNA... 36 0.73
EU273942_1(EU273942|pid:none) Amphimedon queenslandica notch mRN... 36 0.73
AY553633_1(AY553633|pid:none) Paramecium primaurelia surface ant... 36 0.73
AY265358_1(AY265358|pid:none) Homo sapiens glycoprotein receptor... 35 0.96
AP007169_430(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 35 0.96
AY027889_1(AY027889|pid:none) Aedes aegypti vitellogenin recepto... 35 0.96
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 35 0.96
AF137350_1(AF137350|pid:none) Rattus norvegicus embryonic vascul... 35 0.96
BC008720_1(BC008720|pid:none) Homo sapiens cysteine-rich with EG... 35 0.96
BX276181_1(BX276181|pid:none) Zebrafish DNA sequence from clone ... 35 0.96
AB052951_1(AB052951|pid:none) Homo sapiens mRNA for SRECRP-1, co... 35 0.96
(Q96HD1) RecName: Full=Cysteine-rich with EGF-like domain protei... 35 0.96
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 35 0.96
AC007556_2(AC007556|pid:none) Homo sapiens BAC clone RP11-18C9 f... 35 0.96
(P98164) RecName: Full=Low-density lipoprotein receptor-related ... 35 0.96
AF522196_1(AF522196|pid:none) Homo sapiens scavenger receptor ty... 35 0.96
(P98158) RecName: Full=Low-density lipoprotein receptor-related ... 35 0.96
EU596506_1(EU596506|pid:none) Rattus norvegicus tenascin C (Tnc)... 35 0.96
AK314113_1(AK314113|pid:none) Homo sapiens cDNA, FLJ94803, highl... 35 0.96
AM746676_1040(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 0.96
AY265357_1(AY265357|pid:none) Homo sapiens glycoprotein receptor... 35 0.96
T18482(T18482)hypothetical protein C0705c - malaria parasite (Pl... 35 0.97
(O13766) RecName: Full=Zinc metalloprotease mde10; EC=3... 35 1.3
BX323857_1(BX323857|pid:none) Mouse DNA sequence from clone RP23... 35 1.3
AJ409106_2(AJ409106|pid:none) Entamoeba histolytica vsp gene for... 35 1.3
(Q2KIT5) RecName: Full=Cysteine-rich with EGF-like domain protei... 35 1.3
(O70244) RecName: Full=Cubilin; AltName: Full=Intrinsic factor-c... 35 1.3
DQ812528_1(DQ812528|pid:none) Spironucleus barkhanus isolate Sp1... 35 1.3
AY331705_1(AY331705|pid:none) Crassostrea virginica metallothion... 35 1.3
AM920429_155(AM920429|pid:none) Penicillium chrysogenum Wisconsi... 35 1.3
(Q61554) RecName: Full=Fibrillin-1; Flags: Precursor; &A55624(A... 35 1.3
(Q05793) RecName: Full=Basement membrane-specific heparan sulfat... 35 1.3
(Q5EA62) RecName: Full=Fibulin-5; Short=FIBL-5; Flags: ... 35 1.3
AM494941_25(AM494941|pid:none) Leishmania braziliensis chromosom... 35 1.3
CT033758_4(CT033758|pid:none) Mouse DNA sequence from clone RP23... 35 1.6
D88664_1(D88664|pid:none) Plasmodium berghei DNA for ookinete su... 35 1.6
A48089(A48089;S37437) growth arrest-specific protein gas6 - mous... 35 1.6
X62009_1(X62009|pid:none) Homo sapiens partial mRNA for fibrilli... 35 1.6
AM746676_7565(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 1.6
(Q61810) RecName: Full=Latent-transforming growth factor beta-bi... 35 1.6
AB218869_1(AB218869|pid:none) Rhyparobia maderae LpR mRNA for Li... 35 1.6
AM746676_4695(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 1.6
BC094612_1(BC094612|pid:none) Mus musculus latent transforming g... 35 1.6
(Q8CIR0) RecName: Full=Latent-transforming growth factor beta-bi... 35 1.6
CR457380_1(CR457380|pid:none) Homo sapiens full open reading fra... 35 1.6
AM746676_4565(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 1.6
AF354529_1(AF354529|pid:none) Giardia intestinalis variable surf... 35 1.6
AM746676_5937(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 1.6
(Q5RC26) RecName: Full=Fibulin-5; Short=FIBL-5; Flags: ... 35 1.6
(Q9UBX5) RecName: Full=Fibulin-5; Short=FIBL-5; AltName... 35 1.6
AF093118_1(AF093118|pid:none) Homo sapiens UP50 mRNA, complete c... 35 1.6
BX248290_1(BX248290|pid:none) human full-length cDNA clone CS0DI... 35 1.6
L40459_1(L40459|pid:none) Mus musculus latent transforming growt... 35 1.6
AP007169_167(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 35 1.6
AB033332_1(AB033332|pid:none) Ciona intestinalis Ci-NET1b mRNA f... 34 2.1
AY525635_1(AY525635|pid:none) Meretrix lusoria metallothionein m... 34 2.1
(P46530) RecName: Full=Neurogenic locus notch homolog protein 1;... 34 2.1
AK083151_1(AK083151|pid:none) Mus musculus adult male hippocampu... 34 2.1
AK041057_1(AK041057|pid:none) Mus musculus adult male aorta and ... 34 2.1
AB209735_1(AB209735|pid:none) Homo sapiens mRNA for fibrillin 2 ... 34 2.1
FN317355_1(FN317355|pid:none) Schistosoma japonicum isolate Anhu... 34 2.1
BC005429_1(BC005429|pid:none) Mus musculus matrilin 2, mRNA (cDN... 34 2.1
AK163818_1(AK163818|pid:none) Mus musculus 16 days embryo head c... 34 2.1
EF634346_1(EF634346|pid:none) Lehmannia valentiana matrilin-like... 34 2.1
AM746676_2058(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 34 2.1
AL592545_3(AL592545|pid:none) Mouse DNA sequence from clone RP23... 34 2.1
(O08746) RecName: Full=Matrilin-2; Flags: Precursor; &U69262_1(... 34 2.8
S82451_1(S82451|pid:none) latent transforming growth factor-beta... 34 2.8
AF369477_1(AF369477|pid:none) Mus musculus strain 129P3/J lipopr... 34 2.8
AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromoso... 34 2.8
AE014134_2561(AE014134|pid:none) Drosophila melanogaster chromos... 34 2.8
(O73775) RecName: Full=Fibulin-1; Short=FIBL-1; Flags: ... 34 2.8
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat... 34 2.8
DQ324381_1(DQ324381|pid:none) Notophthalmus viridescens growth a... 34 2.8
AB209498_1(AB209498|pid:none) Homo sapiens mRNA for low density ... 34 2.8
BT045135_1(BT045135|pid:none) Salmo salar clone ssal-rgf-513-057... 34 2.8
(P17053) RecName: Full=G surface protein, allelic form 168; Flag... 34 2.8
AE014296_1363(AE014296|pid:none) Drosophila melanogaster chromos... 34 2.8
DQ103506_1(DQ103506|pid:none) Dermacentor variabilis vitellogeni... 34 2.8
A57293(A57293;A60487)latent transforming growth factor beta-bind... 34 2.8
AY331707_1(AY331707|pid:none) Crassostrea virginica metallothion... 34 2.8
X55077_1(X55077|pid:none) H.sapiens mRNA fragment for alpha-2 ma... 34 2.8
BC091093_1(BC091093|pid:none) Xenopus tropicalis GRN protein, mR... 34 2.8
(Q91ZX7) RecName: Full=Prolow-density lipoprotein receptor-relat... 34 2.8
BC078659_1(BC078659|pid:none) Homo sapiens latent transforming g... 34 2.8
S25111(S25111;S32554) alpha-2-macroglobulin receptor precursor -... 34 2.8
AB209865_1(AB209865|pid:none) Homo sapiens mRNA for latent trans... 34 2.8
AF354541_1(AF354541|pid:none) Giardia intestinalis variable surf... 34 2.8
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; &A57278(A... 34 2.8
AF051400_1(AF051400|pid:none) Gallus gallus fibulin-1, isoform C... 34 2.8
BT032860_1(BT032860|pid:none) Drosophila melanogaster RE24628 fu... 34 2.8
AF135118_1(AF135118|pid:none) Drosophila melanogaster laminin al... 34 2.8
AF238886_1(AF238886|pid:none) Bacillus cereus strain ATCC 11778 ... 34 2.8
FB899071_1(FB899071|pid:none) Sequence 118344 from Patent WO2008... 33 3.6
AF489528_1(AF489528|pid:none) Homo sapiens transforming growth f... 33 3.6
EU972808_1(EU972808|pid:none) Zea mays clone 388422 unknown mRNA. 33 3.6
AL844505_226(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 33 3.6
A35626(A35626) transforming growth factor beta-1-binding protein... 33 3.6
AK131126_1(AK131126|pid:none) Mus musculus premature mRNA for mF... 33 3.6
BC144128_1(BC144128|pid:none) Homo sapiens latent transforming g... 33 3.6
AY540953_1(AY540953|pid:none) Strongylocentrotus purpuratus prot... 33 3.6
CR940347_590(CR940347|pid:none) Theileria annulata strain Ankara... 33 3.6
A23475(A23475)G surface protein - Paramecium primaurelia 33 3.6
AY331702_1(AY331702|pid:none) Crassostrea virginica metallothion... 33 3.6
DQ234084_1(DQ234084|pid:none) Paramecium tetraurelia A51 surface... 33 3.6
(P98157) RecName: Full=Low-density lipoprotein receptor-related ... 33 3.6
(P31100) RecName: Full=Phospholipase A2 RV-7; EC=3.1.1.... 33 3.6
AK298027_1(AK298027|pid:none) Homo sapiens cDNA FLJ51010 complet... 33 3.6
AF160978_1(AF160978|pid:none) Rattus norvegicus C1qRp (C1qRp) mR... 33 3.6
BX649457_6(BX649457|pid:none) Zebrafish DNA sequence from clone ... 33 3.6
BC168401_1(BC168401|pid:none) Synthetic construct Mus musculus c... 33 3.6
AB208801_1(AB208801|pid:none) Homo sapiens mRNA for latent trans... 33 3.6
AK304737_1(AK304737|pid:none) Homo sapiens cDNA FLJ61597 partial... 33 3.6
AE014188_317(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 33 3.7
AB210518_1(AB210518|pid:none) Ciona intestinalis mRNA for jagged... 33 4.8
U31961_14(U31961|pid:none) Drosophila melanogaster bithorax comp... 33 4.8
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele... 33 4.8
EU854565_1(EU854565|pid:none) Danio rerio fibrillin 4 (fbn4) mRN... 33 4.8
AF475069_1(AF475069|pid:none) Mus musculus domesticus laminet-1A... 33 4.8
(A8MXZ3) RecName: Full=Putative keratin-associated protein 9-2-l... 33 4.8
AL606536_6(AL606536|pid:none) Mouse DNA sequence from clone RP23... 33 4.8
(Q8R4F8) RecName: Full=Netrin-G1; AltName: Full=Laminet-1; Flags... 33 4.8
AC135415_18(AC135415|pid:none) Medicago truncatula clone mth2-10... 33 4.8
AY119566_1(AY119566|pid:none) Drosophila melanogaster HL01481 fu... 33 4.8
DQ097066_1(DQ097066|pid:none) Desmognathus ocoee clone DocoeSPF2... 33 4.8
(A0A1F4) RecName: Full=Protein eyes shut; AltName: Full=Protein ... 33 4.8
DQ399439_1(DQ399439|pid:none) Ictalurus punctatus clone SOA07 pr... 33 4.8
BC031378_1(BC031378|pid:none) Mus musculus crumbs homolog 1 (Dro... 33 4.8
M14338_1(M14338|pid:none) Homo sapiens PROS1 (PROS1) precursor R... 33 4.8
AB287423_1(AB287423|pid:none) Entamoeba dispar igl1 mRNA for int... 33 4.8
AM746676_9273(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 33 4.8
AB095016_1(AB095016|pid:none) Cynops pyrrhogaster Notch-1 mRNA f... 33 4.8
L31380_1(L31380|pid:none) Macaca mulatta vitamin K dependent pro... 33 4.8
AK165831_1(AK165831|pid:none) Mus musculus lung RCB-0558 LLC cDN... 33 4.8
AK220196_1(AK220196|pid:none) Mus musculus mRNA for mKIAA4226 pr... 33 4.8
BC160988_1(BC160988|pid:none) Xenopus tropicalis hypothetical pr... 33 4.8
BC053331_1(BC053331|pid:none) Mus musculus crumbs homolog 1 (Dro... 33 4.8
(Q28520) RecName: Full=Vitamin K-dependent protein S; Flags: Pre... 33 4.8
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ... 33 4.8
(Q4V7F2) RecName: Full=Cysteine-rich with EGF-like domain protei... 33 4.8
BC172946_1(BC172946|pid:none) Synthetic construct Mus musculus c... 33 4.8
AF406641_1(AF406641|pid:none) Mus musculus crumbs-like protein 1... 33 4.8
CP001016_3177(CP001016|pid:none) Beijerinckia indica subsp. indi... 33 4.8
(O00468) RecName: Full=Agrin; Flags: Precursor; &AB191264_1(AB1... 33 6.2
AK298858_1(AK298858|pid:none) Homo sapiens cDNA FLJ55349 complet... 33 6.2
AF016903_1(AF016903|pid:none) Homo sapiens agrin precursor mRNA,... 33 6.2
(Q9NS15) RecName: Full=Latent-transforming growth factor beta-bi... 33 6.2
DQ097073_1(DQ097073|pid:none) Eurycea wilderae clone EwildSPF1 s... 33 6.2
AK024477_1(AK024477|pid:none) Homo sapiens mRNA for FLJ00070 pro... 33 6.2
FN357489_4(FN357489|pid:none) Schistosoma mansoni genome sequenc... 33 6.2
AM746676_6052(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 33 6.2
AY074792_1(AY074792|pid:none) Strongylocentrotus purpuratus delt... 33 6.2
BC145886_1(BC145886|pid:none) Mus musculus sushi, nidogen and EG... 33 6.2
AM114769_1(AM114769|pid:none) Platynereis dumerilii partial mRNA... 33 6.2
AL161590_21(AL161590|pid:none) Arabidopsis thaliana DNA chromoso... 33 6.2
AK124524_1(AK124524|pid:none) Homo sapiens cDNA FLJ42533 fis, cl... 33 6.2
U20217_1(U20217|pid:none) Mus musculus fibrillin-2 mRNA, partial... 33 6.2
BC008761_1(BC008761|pid:none) Homo sapiens latent transforming g... 33 6.2
(Q70E20) RecName: Full=Sushi, nidogen and EGF-like domain-contai... 33 6.2
AX647129_1(AX647129|pid:none) Sequence 1321 from Patent EP1270724. 33 6.2
AM746676_5602(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 33 6.2
(P07225) RecName: Full=Vitamin K-dependent protein S; Flags: Pre... 33 6.2
M15036_1(M15036|pid:none) Human vitamin K-dependent plasma prote... 33 6.2
AK080869_1(AK080869|pid:none) Mus musculus 4 days neonate male a... 33 6.2
AF337951_1(AF337951|pid:none) Entamoeba histolytica Gal/GalNAc l... 33 6.2
AF135960_1(AF135960|pid:none) Homo sapiens latent transforming g... 33 6.2
AB220440_1(AB220440|pid:none) Macaca fascicularis mRNA, clone Qc... 33 6.2
AE013599_3495(AE013599|pid:none) Drosophila melanogaster chromos... 33 6.2
(Q811M5) RecName: Full=Complement component C6; Flags: Precursor... 33 6.2
AK299351_1(AK299351|pid:none) Homo sapiens cDNA FLJ59398 complet... 33 6.2
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA... 33 6.3
BC166351_1(BC166351|pid:none) Xenopus tropicalis fibrillin 3, mR... 32 8.1
AL928667_3(AL928667|pid:none) Mouse DNA sequence from clone RP23... 32 8.1
M64780_2(M64780|pid:none) Rat agrin mRNA, complete cds. 32 8.1
AK083701_1(AK083701|pid:none) Mus musculus 9 days embryo whole b... 32 8.1
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 32 8.1
(O88799) RecName: Full=Zonadhesin; Flags: Precursor; &T42215(T4... 32 8.1
U28735_9(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, c... 32 8.1
(Q9Y2I2) RecName: Full=Netrin-G1; AltName: Full=Laminet-1; Flags... 32 8.1
EF178297_1(EF178297|pid:none) Helix aspersa copper-metallothione... 32 8.1
AL732564_1(AL732564|pid:none) Mouse DNA sequence from clone RP23... 32 8.1
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 32 8.1
AY358898_1(AY358898|pid:none) Homo sapiens clone DNA32279 FBLN5 ... 32 8.1
AJ295695_1(AJ295695|pid:none) Homo sapiens mRNA for stabilin-2 (... 32 8.1
AB287420_1(AB287420|pid:none) Achaearanea tepidariorum At-Delta ... 32 8.1
BC034076_1(BC034076|pid:none) Mus musculus hemicentin 2, mRNA (c... 32 8.1
AL928667_4(AL928667|pid:none) Mouse DNA sequence from clone RP23... 32 8.1
(P25304) RecName: Full=Agrin; Flags: Precursor; &AGRT(JH0399;A3... 32 8.1
AY340984_2(AY340984|pid:none) Squirrel poxvirus putative F15L pr... 32 8.1
AC024830_9(AC024830|pid:none) Caenorhabditis elegans cosmid Y55F... 32 8.1
U28735_10(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, ... 32 8.1
AF056116_15(AF056116|pid:none) Fugu rubripes serine/threonine ki... 32 8.1
DQ097063_1(DQ097063|pid:none) Desmognathus monticola clone Dmont... 32 8.1
AK050380_1(AK050380|pid:none) Mus musculus adult male liver tumo... 32 8.1
AB052958_1(AB052958|pid:none) Homo sapiens mRNA for FELE-2, comp... 32 8.1
AF394584_1(AF394584|pid:none) Galleria mellonella 6tox mRNA, com... 32 8.1
(Q8WWQ8) RecName: Full=Stabilin-2; AltName: Full=Fasciclin, EGF-... 32 8.1
AF273033_1(AF273033|pid:none) Desulfotomaculum aeronauticum diss... 32 8.1
>(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;
Length = 516
Score = 301 bits (770), Expect = 9e-81
Identities = 129/129 (100%), Positives = 129/129 (100%)
Frame = +3
Query: 3 GKNDTCCFVNKCETINRCLEADCNEGTNFQCDYHIKNCSDGDICSTDGCDIGFGCINLPI 182
GKNDTCCFVNKCETINRCLEADCNEGTNFQCDYHIKNCSDGDICSTDGCDIGFGCINLPI
Sbjct: 248 GKNDTCCFVNKCETINRCLEADCNEGTNFQCDYHIKNCSDGDICSTDGCDIGFGCINLPI 307
Query: 183 NCDDGNYCTKDYCDPTYGCLHIETANCTECLETGCITVLPCFPVTCDSLNSSHCVASAMN 362
NCDDGNYCTKDYCDPTYGCLHIETANCTECLETGCITVLPCFPVTCDSLNSSHCVASAMN
Sbjct: 308 NCDDGNYCTKDYCDPTYGCLHIETANCTECLETGCITVLPCFPVTCDSLNSSHCVASAMN 367
Query: 363 CSDNDPCTS 389
CSDNDPCTS
Sbjct: 368 CSDNDPCTS 376
Score = 42.7 bits (99), Expect = 0.006
Identities = 41/178 (23%), Positives = 60/178 (33%)
Frame = +3
Query: 9 NDTCCFVNKCETINRCLEADCNEGTNFQCDYHIKNCSDGDICSTDGCDIGFGCINLPINC 188
N T C C T+ C C+ + C NCSD D C++ C G
Sbjct: 333 NCTECLETGCITVLPCFPVTCDSLNSSHCVASAMNCSDNDPCTSTECVNGECTYEWICGS 392
Query: 189 DDGNYCTKDYCDPTYGCLHIETANCTECLETGCITVLPCFPVTCDSLNSSHCVASAMNCS 368
+D + D + G + + ++ +++ I + + +L+ S
Sbjct: 393 EDS---SSGVVDSSSGVVD----SSSDVIDSSDIIIDSSSDIPIPTLSPS---------- 435
Query: 369 DNDPCTSRFXXXXXXXXXXXXXXXXXXXXXXKIYEDPEXXXXXXXXXXXXGCILTGKS 542
P SRF KIYEDPE GCILTGKS
Sbjct: 436 ---PQPSRFPTDTPTNTPMPPTRPPTPTEDPKIYEDPEDLDKDCLHCKDLGCILTGKS 490
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 709,391,951
Number of extensions: 13995830
Number of successful extensions: 40697
Number of sequences better than 10.0: 293
Number of HSP's gapped: 39280
Number of HSP's successfully gapped: 476
Length of query: 181
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 61
Effective length of database: 662,793,784
Effective search space: 40430420824
Effective search space used: 40430420824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |