Contig-U15681-1 |
Contig ID |
Contig-U15681-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2618 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
50 |
Number of EST |
82 |
Link to clone list |
U15681 |
List of clone(s) |
est1=AHA666F,1,465 est2=CHH510F,1,117 est3=SHI268F,1,233 est4=SHK240F,23,262 est5=CHO237F,27,585 est6=AHO772F,29,652 est7=AHG334F,60,653 est8=AHE460F,67,661 est9=AHA177F,72,663 est10=AHO301F,89,514 est11=AHA220F,92,713 est12=AHI538F,94,715 est13=AHN550F,96,710 est14=AHG585F,101,709 est15=AHB401F,104,715 est16=AHD263F,104,715 est17=AHE628F,104,712 est18=AHB353F,105,703 est19=AHD584F,108,714 est20=AHJ260F,108,708 est21=CHM154F,111,654 est22=SHL363F,111,695 est23=AHD658F,114,713 est24=AHQ845F,119,713 est25=SHF195F,120,702 est26=CHJ890F,121,700 est27=AHF466F,124,716 est28=AHI522F,124,712 est29=AHD210F,125,716 est30=AHJ754F,127,713 est31=AHG441F,151,716 est32=AHI388F,174,616 est33=AHK732F,174,716 est34=AHQ514F,183,716 est35=AHA189F,185,818 est36=AHK809F,189,818 est37=AHP523F,195,419 est38=AHP757F,242,490 est39=AHJ783F,243,638 est40=AFL247F,819,1392 est41=AHI388Z,1004,1748 est42=AHL585Z,1008,1771 est43=AHI538Z,1033,1584 est44=AFB655F,1052,1643 est45=AHA177Z,1088,1749 est46=AHJ783Z,1105,1760 est47=AHE460Z,1112,1920 est48=AHF466Z,1118,1928 est49=AHK809Z,1144,1917 est50=AHL525Z,1160,1896 est51=AHA189Z,1162,1889 est52=AHO101Z,1180,1969 est53=AHJ754Z,1194,1889 est54=AFB655X,1202,1887 est55=AHO572Z,1240,1975 est56=AHB401Z,1268,1923 est57=AHJ260Z,1268,2038 est58=AHG441Z,1276,1836 est59=SHK240Z,1282,1977 est60=AHD584Z,1288,2053 est61=AHG585Z,1298,1933 est62=AHP757Z,1303,1931 est63=CHJ890Z,1313,1972 est64=AHC638Z,1331,2053 est65=AHP523Z,1360,1912 est66=AHR426Z,1366,2038 est67=CHH510Z,1381,1744 est68=AHN550Z,1393,2053 est69=SSD611F,1482,1701 est70=AFL247Z,1574,1676 est71=AHA666Z,1778,2523 est72=CHM154Z,1833,2506 est73=CHO237Z,1863,2511 est74=AFB655Z,1875,2509 est75=AHQ845Z,1878,2605 est76=SHF195Z,1879,2601 est77=AHJ319Z,1882,2610 est78=AHK732Z,1899,2588 est79=SHL363Z,1904,2605 est80=AHB804Z,1905,2602 est81=AHB353Z,1907,2510 est82=SSD611Z,2439,2618
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 2. 6 |
Homology vs DNA |
Query= Contig-U15681-1 (Contig-U15681-1Q) /CSM_Contig/Contig-U15681-1Q.Seq.d (2628 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ330493) Dictyostelium discoideum cDNA clone:dda31a23, 5' ... 1158 0.0 1 (BJ335907) Dictyostelium discoideum cDNA clone:dda52b04, 5' ... 1152 0.0 1 (BJ356017) Dictyostelium discoideum cDNA clone:dda59a01, 3' ... 957 0.0 3 (BJ354622) Dictyostelium discoideum cDNA clone:dda54a07, 3' ... 854 0.0 3 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 438 0.0 12 (BJ408026) Dictyostelium discoideum cDNA clone:dds44o10, 3' ... 765 0.0 3 (BJ334953) Dictyostelium discoideum cDNA clone:dda48k09, 5' ... 928 0.0 2 (BJ381521) Dictyostelium discoideum cDNA clone:ddc41d24, 3' ... 848 0.0 2 (BJ339162) Dictyostelium discoideum cDNA clone:dda64j12, 5' ... 924 0.0 2 (BJ394384) Dictyostelium discoideum cDNA clone:dds34m23, 5' ... 922 0.0 2 (BJ352803) Dictyostelium discoideum cDNA clone:dda47p21, 3' ... 749 0.0 3 (BJ333125) Dictyostelium discoideum cDNA clone:dda41d18, 5' ... 922 0.0 2 (BJ334027) Dictyostelium discoideum cDNA clone:dda44i21, 5' ... 910 0.0 2 (BJ356559) Dictyostelium discoideum cDNA clone:dda60o17, 3' ... 880 0.0 2 (BJ397540) Dictyostelium discoideum cDNA clone:dds46n15, 5' ... 916 0.0 2 (BJ331022) Dictyostelium discoideum cDNA clone:dda33j13, 5' ... 904 0.0 2 (BJ335546) Dictyostelium discoideum cDNA clone:dda50l13, 5' ... 918 0.0 2 (BJ339100) Dictyostelium discoideum cDNA clone:dda64k03, 5' ... 930 0.0 1 (BJ336025) Dictyostelium discoideum cDNA clone:dda52p07, 5' ... 930 0.0 1 (BJ354819) Dictyostelium discoideum cDNA clone:dda54i21, 3' ... 749 0.0 4 (BJ333585) Dictyostelium discoideum cDNA clone:dda43b12, 5' ... 922 0.0 1 (BJ328232) Dictyostelium discoideum cDNA clone:dda23m12, 5' ... 502 0.0 4 (BJ353275) Dictyostelium discoideum cDNA clone:dda49g16, 3' ... 827 0.0 2 (BJ348361) Dictyostelium discoideum cDNA clone:dda33b02, 3' ... 825 0.0 2 (BJ368418) Dictyostelium discoideum cDNA clone:ddc46k13, 5' ... 835 0.0 2 (BJ332572) Dictyostelium discoideum cDNA clone:dda39h16, 5' ... 821 0.0 2 (BJ330527) Dictyostelium discoideum cDNA clone:dda31i19, 5' ... 819 0.0 2 (BJ350129) Dictyostelium discoideum cDNA clone:dda38g21, 3' ... 787 0.0 2 (BJ357012) Dictyostelium discoideum cDNA clone:dda62m05, 3' ... 739 0.0 2 (BJ347993) Dictyostelium discoideum cDNA clone:dda31i19, 3' ... 749 0.0 2 (BJ352927) Dictyostelium discoideum cDNA clone:dda48k09, 3' ... 728 0.0 2 (BJ324082) Dictyostelium discoideum cDNA clone:dda4m14, 5' e... 749 0.0 3 (BJ350362) Dictyostelium discoideum cDNA clone:dda39h16, 3' ... 704 0.0 3 (BJ349403) Dictyostelium discoideum cDNA clone:dda36k10, 3' ... 708 0.0 2 (BJ353597) Dictyostelium discoideum cDNA clone:dda50f21, 3' ... 404 0.0 3 (BJ367205) Dictyostelium discoideum cDNA clone:ddc41d24, 5' ... 688 0.0 3 (BJ369381) Dictyostelium discoideum cDNA clone:ddc50i10, 5' ... 698 0.0 2 (BJ350951) Dictyostelium discoideum cDNA clone:dda41d18, 3' ... 505 0.0 5 (BJ357953) Dictyostelium discoideum cDNA clone:dda65d08, 3' ... 517 0.0 3 (BJ331951) Dictyostelium discoideum cDNA clone:dda37m16, 5' ... 404 0.0 5 (BJ332049) Dictyostelium discoideum cDNA clone:dda37c04, 5' ... 404 0.0 5 (BJ332264) Dictyostelium discoideum cDNA clone:dda38c16, 5' ... 404 0.0 5 (BJ330856) Dictyostelium discoideum cDNA clone:dda33b02, 5' ... 404 0.0 5 (BJ330308) Dictyostelium discoideum cDNA clone:dda31g06, 5' ... 404 0.0 5 (BJ332912) Dictyostelium discoideum cDNA clone:dda40g08, 5' ... 404 0.0 5 (BJ334830) Dictyostelium discoideum cDNA clone:dda47p21, 5' ... 414 0.0 2 (BJ332354) Dictyostelium discoideum cDNA clone:dda38g21, 5' ... 404 0.0 5 (BJ337729) Dictyostelium discoideum cDNA clone:dda58c13, 5' ... 404 0.0 5 (BJ335269) Dictyostelium discoideum cDNA clone:dda49g16, 5' ... 404 0.0 5 (BJ334879) Dictyostelium discoideum cDNA clone:dda48k05, 5' ... 398 0.0 5 (BJ347959) Dictyostelium discoideum cDNA clone:dda31a23, 3' ... 613 0.0 3 (BJ353947) Dictyostelium discoideum cDNA clone:dda52b04, 3' ... 545 0.0 4 (BJ355875) Dictyostelium discoideum cDNA clone:dda58c13, 3' ... 595 0.0 2 (BJ353560) Dictyostelium discoideum cDNA clone:dda50l13, 3' ... 565 0.0 2 (BJ333591) Dictyostelium discoideum cDNA clone:dda43d09, 5' ... 404 e-174 5 (BJ338268) Dictyostelium discoideum cDNA clone:dda60p17, 5' ... 404 e-172 5 (BJ353124) Dictyostelium discoideum cDNA clone:dda49f05, 3' ... 331 e-160 6 (BJ409283) Dictyostelium discoideum cDNA clone:dds40g18, 3' ... 476 e-152 2 (BJ337792) Dictyostelium discoideum cDNA clone:dda59b01, 5' ... 492 e-146 2 (BJ380100) Dictyostelium discoideum cDNA clone:ddc37c03, 3' ... 515 e-141 1 (BJ338662) Dictyostelium discoideum cDNA clone:dda62b15, 5' ... 486 e-132 1 (BJ354081) Dictyostelium discoideum cDNA clone:dda52p07, 3' ... 466 e-129 2 (BJ348708) Dictyostelium discoideum cDNA clone:dda34h02, 3' ... 466 e-129 2 (BJ408707) Dictyostelium discoideum cDNA clone:dds46n15, 3' ... 466 e-129 2 (BJ357687) Dictyostelium discoideum cDNA clone:dda64j12, 3' ... 466 e-129 2 (BJ351865) Dictyostelium discoideum cDNA clone:dda44i21, 3' ... 385 e-128 3 (BJ351386) Dictyostelium discoideum cDNA clone:dda43b12, 3' ... 317 e-126 4 (BJ357112) Dictyostelium discoideum cDNA clone:dda62b15, 3' ... 375 e-126 3 (BJ406335) Dictyostelium discoideum cDNA clone:dds34m23, 3' ... 442 e-122 2 (BJ330721) Dictyostelium discoideum cDNA clone:dda32c18, 5' ... 371 e-112 2 (BJ348209) Dictyostelium discoideum cDNA clone:dda32c18, 3' ... 353 e-111 5 (BJ383025) Dictyostelium discoideum cDNA clone:ddc46k13, 3' ... 400 e-109 2 (BJ384687) Dictyostelium discoideum cDNA clone:ddc50i10, 3' ... 353 e-109 3 (BJ348558) Dictyostelium discoideum cDNA clone:dda33j13, 3' ... 353 e-108 3 (BJ340984) Dictyostelium discoideum cDNA clone:dda4m14, 3' e... 353 e-108 3 (G65016) DH0229 Dictyostelium discoideum ( P.Dear ) Dictyost... 331 8e-86 1 (BJ338594) Dictyostelium discoideum cDNA clone:dda62m05, 5' ... 329 3e-85 1 (AU072181) Dictyostelium discoideum slug cDNA, clone SSD611. 283 2e-71 1 (BJ335582) Dictyostelium discoideum cDNA clone:dda50f21, 5' ... 170 5e-68 4 (BJ345349) Dictyostelium discoideum cDNA clone:dda23m12, 3' ... 137 2e-27 1 (AU037415) Dictyostelium discoideum slug cDNA, clone SSD611. 98 2e-15 1 (BJ353205) Dictyostelium discoideum cDNA clone:dda49g12, 3' ... 42 6e-14 6 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 46 8e-12 15 (BJ351226) Dictyostelium discoideum cDNA clone:dda42a13, 3' ... 72 5e-10 2 (BJ341785) Dictyostelium discoideum cDNA clone:dda8l05, 3' e... 46 1e-08 4 (BJ355887) Dictyostelium discoideum cDNA clone:dda58e16, 3' ... 46 1e-08 4 (BJ407204) Dictyostelium discoideum cDNA clone:dds37f19, 3' ... 46 1e-08 4 (BJ353902) Dictyostelium discoideum cDNA clone:dda51g20, 3' ... 46 1e-08 4 (BJ395897) Dictyostelium discoideum cDNA clone:dds40g18, 5' ... 66 7e-06 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.004 23 (AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 0.005 13 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.009 16 (BX248583) Blochmannia floridanus complete genome. 36 0.026 22 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 36 0.042 24 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.049 20 (AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 0.17 17 (DX379565) 3B_108_G11_FM1 Triticum aestivum chromosome 3B-sp... 38 0.32 2 (AM478647) Vitis vinifera contig VV78X155320.9, whole genome... 42 0.32 4 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.36 24 (CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 32 0.49 20 (BX088545) Zebrafish DNA sequence from clone DKEY-60G19 in l... 34 0.61 12 (AB120422) Helicobacter pylori genes for cag pathogenicity i... 40 0.64 2 (AB120421) Helicobacter pylori genes for cag pathogenicity i... 40 0.65 2 (AM430430) Vitis vinifera contig VV78X047414.4, whole genome... 34 0.86 6 (AM932684) Triticum aestivum 3B chromosome, clone BAC TA3B95C9. 36 0.89 2 (CT526016) A BAC library has been constructed from cultivar ... 38 0.89 2 (AM422018) Candidatus Phytoplasma australiense complete genome. 32 1.1 24 (ER777886) TAACSP3AShA_0105A19R TAACSP3AShA Triticum aestivu... 36 1.2 2 (CO186534) EK020732.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 40 1.2 2 (AZ693441) ENTIU57TR Entamoeba histolytica Sheared DNA Entam... 40 1.4 3 (AM427172) Vitis vinifera contig VV78X032012.3, whole genome... 32 1.5 6 (EF622227) Saturnia boisduvalii mitochondrion, complete genome. 32 1.6 8 (AC157791) Mus musculus chromosome 3, clone RP24-176D22, com... 48 1.7 1 (AC116732) Mus musculus chromosome 3, clone RP23-347F4, comp... 48 1.7 1 (AC129998) Rattus norvegicus clone CH230-326F4, WORKING DRAF... 48 1.7 1 (AC129423) Rattus norvegicus clone CH230-125C18, WORKING DRA... 48 1.7 1 (AC123237) Rattus norvegicus clone CH230-146N10, WORKING DRA... 48 1.7 1 (AC110108) Rattus norvegicus clone CH230-100K5, *** SEQUENCI... 48 1.7 1 (AC109673) Rattus norvegicus clone CH230-95B2, *** SEQUENCIN... 48 1.7 1 (AC096078) Rattus norvegicus clone CH230-33J21, *** SEQUENCI... 48 1.7 1 (CU915619) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.7 1 (CU855511) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.7 1 (CZ547555) SRAA-aad74f10.g1 Strongyloides ratti whole genome... 48 1.7 1 (CT352725) Sus scrofa genomic clone CH242-453D14, genomic su... 48 1.7 1 (CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 48 1.7 1 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 1.9 12 (CU929264) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 2.5 6 (AC218052) Solanum lycopersicum chromosome 1 clone C01HBa000... 34 2.6 9 (DQ927304) Tetrahymena paravorax strain RP mitochondrion, co... 38 2.7 7 (AC144405) Medicago truncatula clone mth2-16m18, WORKING DRA... 46 2.9 4 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 3.2 15 (CU655896) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.3 2 (CR112811) Forward strand read from insert in 5'HPRT inserti... 42 3.3 2 (CT009654) Medicago truncatula chromosome 5 clone mth2-17c15... 34 3.4 2 (CU326390) Medicago truncatula chromosome 5 clone mth2-171d1... 34 3.4 2 (AE017308) Mycoplasma mobile 163K complete genome. 34 3.7 22 (EK209342) 1095460093010 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.9 2 (AF291051) Carsonella ruddii cell division protein (gidA) ge... 34 4.0 6 (FH355580) CHO_OF4673xp11f1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 4.4 2 (EJ158618) 1092344039325 Global-Ocean-Sampling_GS-27-01-01-1... 42 4.4 2 (AC116989) Dictyostelium discoideum chromosome 2 map 4545040... 38 4.5 3 (EJ678231) 1092955106370 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.5 3 (EK167737) 1095458060463 Global-Ocean-Sampling_GS-31-01-01-1... 34 4.5 2 (EK438612) 1095521353970 Global-Ocean-Sampling_GS-31-01-01-1... 46 4.5 2 (CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 32 4.6 15 (AC230630) Bos taurus clone CH240-503H5, WORKING DRAFT SEQUE... 36 4.6 8 (EJ722350) 1092959460520 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.8 3 (AJ748296) Sulfolobus islandicus rudivirus 1 variant XX, com... 36 5.0 7 (AC009206) Drosophila melanogaster clone BACR15A11, complete... 34 6.3 11 (BX936364) Zebrafish DNA sequence from clone CH211-247G11 in... 32 6.3 11 (AE000794) Borrelia burgdorferi B31 plasmid lp28-1, complete... 36 6.5 6 (AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 34 6.6 16 (BX323075) Zebrafish DNA sequence from clone CH211-230C4 in ... 36 6.6 10 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 6.7 16 (CR384057) Zebrafish DNA sequence from clone CH211-243K10 in... 34 6.7 10 (AL805928) Mouse DNA sequence from clone RP23-136C12 on chro... 46 6.7 1 (AC100953) Mus musculus chromosome 5, clone RP23-73P16, comp... 46 6.7 1 (AC206054) Pan troglodytes BAC clone CH251-172N23 from chrom... 46 6.7 1 (AR547046) Sequence 2177 from patent US 6747137. 46 6.7 1 (AC083869) Homo sapiens chromosome 7 clone RP11-733N14, comp... 46 6.7 1 (AC004934) Homo sapiens PAC clone RP5-953B5 from 7, complete... 46 6.7 1 (AC160197) Bos taurus clone CH240-83P2, WORKING DRAFT SEQUEN... 46 6.7 1 (AC119423) Papio anubis clone rp41-199n8, WORKING DRAFT SEQU... 46 6.7 1 (AC115856) Mus musculus clone RP24-279B12, WORKING DRAFT SEQ... 46 6.7 1 (CU928139) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.7 1 (AC229715) Medicago truncatula clone mth2-106i22, WORKING DR... 46 6.7 1 (AC184193) Strongylocentrotus purpuratus clone R3-3020E7, WO... 46 6.7 1 (AC164993) Bos taurus clone CH240-167L18, WORKING DRAFT SEQU... 46 6.7 1 (AQ719975) HS_5541_A2_A09_SP6E RPCI-11 Human Male BAC Librar... 46 6.7 1 (FH973384) CHO_OF6815xe01r1.ab1 CHO_OF6 Nicotiana tabacum ge... 46 6.7 1 (EK155734) 1095458004210 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.7 1 (EJ932904) 1093018815568 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.7 1 (EJ853264) 1093017902020 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.7 1 (EJ236452) 1095293060499 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.7 1 (EI798099) MUGQ_CH252P516A21T7_GL513_095 CHORI-252 Vervet Mo... 46 6.7 1 (AG321189) Mus musculus molossinus DNA, clone:MSMg01-107F16.... 46 6.7 1 (ES624638) NGPPU87TR NGPP Nasonia giraulti cDNA, mRNA sequence. 46 6.7 1 (ES621835) NGPEE16TR NGPA Nasonia giraulti cDNA, mRNA sequence. 46 6.7 1 (CR519810) RZPD Mus musculus cDNA clone LIONp462F04369 3' EST. 46 6.7 1 (CN775769) tae77c01.x1 Hydra EST Darmstadt I Hydra magnipapi... 46 6.7 1 (CN628416) tae95g07.x1 Hydra EST Darmstadt I Hydra magnipapi... 46 6.7 1 (CK526893) rswfa0_003811.y1 swf Bombyx mori cDNA, mRNA seque... 46 6.7 1 (CK522003) rswea0_007062.y1 swe Bombyx mori cDNA, mRNA seque... 46 6.7 1 (BJ836146) Misgurnus anguillicaudatus cDNA clone:dj29i06, 3'... 46 6.7 1 (BJ824900) Misgurnus anguillicaudatus cDNA clone:dj29i06, 5'... 46 6.7 1 (BB983715) Bombyx mori mRNA, EST clone:ovS3024C03r, 3' end s... 46 6.7 1 (GE395640) 293778587 Nasonia vitripennis Female Pupae Nasoni... 46 6.7 1 (GE311876) OXAZ-aaa60a04.b1 Oxytricha_pSMART_OXAZ Sterkiella... 46 6.7 1 (GE309251) OXAZ-aaa64c06.b1 Oxytricha_pSMART_OXAZ Sterkiella... 46 6.7 1 (EV428600) 210778819 NVP Nasonia vitripennis cDNA clone 197A... 46 6.7 1 (EV427369) 210767962 NVP Nasonia vitripennis cDNA clone 191E... 46 6.7 1 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 7.4 19 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 7.4 23 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 30 7.5 20 (EF136888) Acaulospora sp. ACAred clone AcaR7 18S small subu... 38 7.6 2 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 8.3 15 (AJ438724) Dyscia penulataria mitochondrion nd1 gene (partia... 34 8.5 3 (AC231696) Choloepus hoffmanni clone CH281-201A18, WORKING D... 44 8.7 6 (EF428478) Grumichella flaveola voucher NRM BH1 cytochrome c... 36 8.9 2 (AJ438737) Dyscia penulataria mitochondrion nd1 gene (partia... 34 8.9 3 (AJ438736) Dyscia penulataria mitochondrion nd1 gene (partia... 34 9.0 3 (ER470429) 1092963950744 Global-Ocean-Sampling_GS-35-01-01-1... 34 9.1 4 (U80032) Caenorhabditis elegans cosmid C32E12, complete sequ... 40 9.5 5 (AC170322) Bos taurus clone CH240-261K11, WORKING DRAFT SEQU... 34 9.5 7 (ET080638) QM0AAC1AC09RM1 CCH3 Citrus clementina genomic clo... 40 9.8 2
>(BJ330493) Dictyostelium discoideum cDNA clone:dda31a23, 5' end, single read. Length = 636
Score = 1158 bits (584), Expect = 0.0 Identities = 584/584 (100%) Strand = Plus / Plus
Query: 234 gtttctgatacattaggatctttaaatgaaccagttgtcaagaattttacatgcacaaaa 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53 gtttctgatacattaggatctttaaatgaaccagttgtcaagaattttacatgcacaaaa 112
Query: 294 caatcattggaatatacatatgatattgatagtacatattattcaaaatggattttttca 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113 caatcattggaatatacatatgatattgatagtacatattattcaaaatggattttttca 172
Query: 354 aatttgaaatatgaattggtttttgaatgtaaaaataatagcaaagaaagaacatgtact 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 aatttgaaatatgaattggtttttgaatgtaaaaataatagcaaagaaagaacatgtact 232
Query: 414 gctggtatgtccattgatattgctaaaaatttacatggtcaaataaagatgtgcagaact 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 gctggtatgtccattgatattgctaaaaatttacatggtcaaataaagatgtgcagaact 292
Query: 474 gataataatggtgtattagattgccattcgaattacgaagaatattttccaaagccaatt 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 gataataatggtgtattagattgccattcgaattacgaagaatattttccaaagccaatt 352
Query: 534 attgaaggtgactttaaaccatctaccaaaggtggtcctactattatgaaaggttattat 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 353 attgaaggtgactttaaaccatctaccaaaggtggtcctactattatgaaaggttattat 412
Query: 594 ttggcagttggagtaattccttactttactattatccctgatactatattgggaacaata 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 413 ttggcagttggagtaattccttactttactattatccctgatactatattgggaacaata 472
Query: 654 ggtgatatttttagtaactctatagatgtcacaaatttaatactagactataaaggtggt 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473 ggtgatatttttagtaactctatagatgtcacaaatttaatactagactataaaggtggt 532
Query: 714 tgtggcccaagaactattcaatggccaaatgattttaaatatagtttcaatcattcaaat 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 533 tgtggcccaagaactattcaatggccaaatgattttaaatatagtttcaatcattcaaat 592
Query: 774 ccaatcattgaaaatattttgatagaaggttcatcttttatatc 817 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 593 ccaatcattgaaaatattttgatagaaggttcatcttttatatc 636
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 2,869,715,218 Number of extensions: 180768943 Number of successful extensions: 14849803 Number of sequences better than 10.0: 210 Length of query: 2628 Length of database: 98,766,808,389 Length adjustment: 25 Effective length of query: 2603 Effective length of database: 96,311,147,814 Effective search space: 250697917759842 Effective search space used: 250697917759842 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.17 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
39 |
AF (FL, S) |
2 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
4 |
SF (FL, S) |
0 |
CH (FL, L) |
4 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |