Contig-U15681-1
Contig ID Contig-U15681-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15681-1 (Contig-U15681-1Q) /CSM_Contig/Contig-U15681-1Q.Seq.d
ATTATCAATATTTTTTTTTTTTAATTATTATTAATATTTATGTTTTTTTA
ATTATTAATATTTTTGTTTTTATATATTATTTTAATTATTATTTTTTTAT
TATTTTTTTTATTTCAAATCATTTACAGTAATAATAAATTATTTAACATC
CTCAAAAAAACAATTTCATTATTAAAATAATAAATAGTAAACCAAAAATG
AAATATATTATATTATTTTTTATTTTATATTTAGTTTCTGATACATTAGG
ATCTTTAAATGAACCAGTTGTCAAGAATTTTACATGCACAAAACAATCAT
TGGAATATACATATGATATTGATAGTACATATTATTCAAAATGGATTTTT
TCAAATTTGAAATATGAATTGGTTTTTGAATGTAAAAATAATAGCAAAGA
AAGAACATGTACTGCTGGTATGTCCATTGATATTGCTAAAAATTTACATG
GTCAAATAAAGATGTGCAGAACTGATAATAATGGTGTATTAGATTGCCAT
TCGAATTACGAAGAATATTTTCCAAAGCCAATTATTGAAGGTGACTTTAA
ACCATCTACCAAAGGTGGTCCTACTATTATGAAAGGTTATTATTTGGCAG
TTGGAGTAATTCCTTACTTTACTATTATCCCTGATACTATATTGGGAACA
ATAGGTGATATTTTTAGTAACTCTATAGATGTCACAAATTTAATACTAGA
CTATAAAGGTGGTTGTGGCCCAAGAACTATTCAATGGCCAAATGATTTTA
AATATAGTTTCAATCATTCAAATCCAATCATTGAAAATATTTTGATAGAA
GGTTCATCTTTTATATCA----------ATATAAATCCAAATAATGTTAA
TGCAACACCAATTATGATTTTTCAAGATAATAGTTCAATAAAAGCAATTG
ATTATAAAAATTCAAATGAATACTCAACTCACACATACTCTTTTGATATT
CCAAAAAGTTGTGGGAGAAATGAAATTACAATTTTAATTGGAGACCAACT
AACCCGTACTGAAATTTATTATGAATTACCAATAATATCAAGTTGTTCAA
TTGTTTCAAATCAAATGATTGAATGTCTTGGTAATTTTTTAAATTATTTA
GATTTATTTAAAAATGGTAAAATTAAAATACAATTTTCAAATATGGTAAT
AATTGATAATATTCCAAACAATCCAATTATTTTTATGAGTGATTCATTTT
CATTCCCAATGAAGCCAGAGTATAGTTCAAGTGATATATATCTTATTGTT
TGTGATGAAACTTCTCCCATATTTTAAAGTTGATATAACTCCATCGCTTA
AATTTGTGAGCCAATCTCTTGTTTTCAACTCCACTGGTGGTGAATTATTA
ATTAATGGTGAAAACTTAAATGAAAATACAATTTACAATACATCTGTATA
TTGCTTTTCAAATAAACAAGTTTATAATTGTTCATTTATAAACAATACAT
CTATATCATGTGATATTGAATTGTTAGGTCCATTCGATCAACTTTGTAAA
ATCAAATTTAATAGTAAAGATGAGAATAATAACATTTCAATATCATATTA
TCCTCCATTAGTTTTAAATTCAACAACGATTTCAAAATCATCAACTGGTG
GAATTATTACTATTTTTGGTAATGAATTTTATAATCAAATTGATTCAATT
ACAGTTGGTAAAAGTAAATGTTTAAACTCTACATTTATAAATTCAACATC
GATTTCATGTTTTGTAGAACCTTCAAATTTTAATATTAACCAAACTGAAC
AACAAAAAAAACAATATGTTAACATTATAATTAATGGTAAAAGTGGTGGT
AATAATTTAATAATTTATTCTGGTAATTCAATTATTGAAGTTAAAAATCA
ATCAAGCGAAAGTGATAAAAACAACAACAATAACAACAATAGTAAAAATA
AAATTAATGATGAAAGTAAAACTGATGGTAGAAGTTTGTATGAAAAATAT
AAAAAATATTTTATAGCAACTATAATAATCGGTAGTTTGGCATTAATTAT
AGTTGCCTTTAAAATTATACTTTACTTTAATAGAAAAAATGGTACTGTAG
TCTATTGGAAATATATTATAAAAGAAAAAATATATAAATTTAAAAATAGA
AAAGAGCAAAAATGTATAGATGATATGAGAGAAATATTAAATAATGCAGA
GAAAAATTTTCCTGACATAAAATTAGATAATTTAATAACTTATAAAAAGT
ATGAAATACCACAAGAAAAAAGTGTAGAAGGAGAACTAAAAGAACAAGCA
CCTCCTCTAAGTGAATATGACCAATTTCCAAGCTATTATTTACATTCACC
AAAAGATTCATTACCTCCAAATCAAACTGAAACATTACAAGAAGATTCTT
TACCTCCAAATCAAACTGAAACATTACCAGAAGTTTCATTACCTCCAAAT
CATATTGAAACATTACCAGAAGTTTCATTACCTCCAAATCAAATTGAAAC
ATTACCAGAAGTTTCATTACCTCCAAATCATATTGAAAAACTAACAGACA
ATTCATCATCATCTCAAGACCCAAGCTCTTCATAATTTTTTAAAAAATAA
ATAAATAAATAAATAAATAAAGAAATAAAGAAATAAATAAATAAATAAAT
TTCTTTTAAAAATAAAATAATAATAAAA

Gap gap included
Contig length 2618
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 50
Number of EST 82
Link to clone list U15681
List of clone(s)

est1=AHA666F,1,465
est2=CHH510F,1,117
est3=SHI268F,1,233
est4=SHK240F,23,262
est5=CHO237F,27,585
est6=AHO772F,29,652
est7=AHG334F,60,653
est8=AHE460F,67,661
est9=AHA177F,72,663
est10=AHO301F,89,514
est11=AHA220F,92,713
est12=AHI538F,94,715
est13=AHN550F,96,710
est14=AHG585F,101,709
est15=AHB401F,104,715
est16=AHD263F,104,715
est17=AHE628F,104,712
est18=AHB353F,105,703
est19=AHD584F,108,714
est20=AHJ260F,108,708
est21=CHM154F,111,654
est22=SHL363F,111,695
est23=AHD658F,114,713
est24=AHQ845F,119,713
est25=SHF195F,120,702
est26=CHJ890F,121,700
est27=AHF466F,124,716
est28=AHI522F,124,712
est29=AHD210F,125,716
est30=AHJ754F,127,713
est31=AHG441F,151,716
est32=AHI388F,174,616
est33=AHK732F,174,716
est34=AHQ514F,183,716
est35=AHA189F,185,818
est36=AHK809F,189,818
est37=AHP523F,195,419
est38=AHP757F,242,490
est39=AHJ783F,243,638
est40=AFL247F,819,1392
est41=AHI388Z,1004,1748
est42=AHL585Z,1008,1771
est43=AHI538Z,1033,1584
est44=AFB655F,1052,1643
est45=AHA177Z,1088,1749
est46=AHJ783Z,1105,1760
est47=AHE460Z,1112,1920
est48=AHF466Z,1118,1928
est49=AHK809Z,1144,1917
est50=AHL525Z,1160,1896
est51=AHA189Z,1162,1889
est52=AHO101Z,1180,1969
est53=AHJ754Z,1194,1889
est54=AFB655X,1202,1887
est55=AHO572Z,1240,1975
est56=AHB401Z,1268,1923
est57=AHJ260Z,1268,2038
est58=AHG441Z,1276,1836
est59=SHK240Z,1282,1977
est60=AHD584Z,1288,2053
est61=AHG585Z,1298,1933
est62=AHP757Z,1303,1931
est63=CHJ890Z,1313,1972
est64=AHC638Z,1331,2053
est65=AHP523Z,1360,1912
est66=AHR426Z,1366,2038
est67=CHH510Z,1381,1744
est68=AHN550Z,1393,2053
est69=SSD611F,1482,1701
est70=AFL247Z,1574,1676
est71=AHA666Z,1778,2523
est72=CHM154Z,1833,2506
est73=CHO237Z,1863,2511
est74=AFB655Z,1875,2509
est75=AHQ845Z,1878,2605
est76=SHF195Z,1879,2601
est77=AHJ319Z,1882,2610
est78=AHK732Z,1899,2588
est79=SHL363Z,1904,2605
est80=AHB804Z,1905,2602
est81=AHB353Z,1907,2510
est82=SSD611Z,2439,2618
Translated Amino Acid sequence
yqyfffliiiniyvfliinifvfiyyfnyyffiiffisnhlq***ii*HPQKNNFIIKII
NSKPKMKYIILFFILYLVSDTLGSLNEPVVKNFTCTKQSLEYTYDIDSTYYSKWIFSNLK
YELVFECKNNSKERTCTAGMSIDIAKNLHGQIKMCRTDNNGVLDCHSNYEEYFPKPIIEG
DFKPSTKGGPTIMKGYYLAVGVIPYFTIIPDTILGTIGDIFSNSIDVTNLILDYKGGCGP
RTIQWPNDFKYSFNHSNPIIENILIEGSSFIS---

---INPNNVNATPIMIFQDNSSIKAIDYKNSNEYSTHTYSFDIPKSCGRNEITILIGDQL
TRTEIYYELPIISSCSIVSNQMIECLGNFLNYLDLFKNGKIKIQFSNMVIIDNIPNNPII
FMSDSFSFPMKPEYSSSDIYLIVCDETSPIF*s*ynsia*icepiscfqlhww*iin*w*
klk*kynlqyicillfk*tsl*lfiykqyiyim*y*ivrsirstl*nqi***r*e**hfn
iilssisfkfnndfkiinwwnyyyfw**il*sn*fnysw*k*mfklyiykfnidfmfcrt
fkf*y*pn*ttkktic*hyn*w*kww**fnnlfw*fny*s*ksikrk**kqqq*qq**k*
n***k*n*w*kfv*ki*kifysnynnr*fginyscl*nytll**kkwycslleiyykrkn
i*i*k*krakmyr*yernik*crekfs*hkir*fnnl*kv*nttrkkcrrrtkrtstssk
*i*piskllftftkrfitsksn*nitrrfftsksn*nitrsfitsksy*nitrsfitsks
n*nitrsfitsksy*ktnrqfiiisrpklfiif*kink*ink*rnkeink*inff*k*nn
nk


Translated Amino Acid sequence (All Frames)
Frame A:
iinifff*lllifmff*lliflflyiiliiifllfflfqiiysnnklfnilkktisllk*
*ivnqk*nilyyflfyi*flih*dl*mnqlsrilhaqnnhwnihmilivhiiqngffqi*
nmnwflnvkiiakkehvllvcplillkiymvk*rcaeliimvy*iairitknifqsqllk
vtlnhlpkvvlll*kviiwqle*fltlllslilyweq*viflvtl*msqi*y*tikvvva
qelfngqmilnivsiiqiqslkif**kvhlly---

---i*iqimlmqhql*ffkiivq*kqliikiqmntqlthtllifqkvvgemklqf*letn
*pvlkfimnyq*yqvvqlfqik*lnvlvif*ii*iylkmvklkynfqiw**liifqtiql
fl*vihfhsq*sqsivqviyillfvmkllpyfkvditpslkfvsqslvfnstggelling
enlnentiyntsvycfsnkqvyncsfinntsiscdiellgpfdqlckikfnskdennnis
isyypplvlnsttisksstggiitifgnefynqidsitvgkskclnstfinstsiscfve
psnfninqteqqkkqyvniiingksggnnliiysgnsiievknqssesdknnnnnnnskn
kindesktdgrslyekykkyfiatiiigslaliivafkiilyfnrkngtvvywkyiikek
iykfknrkeqkciddmreilnnaeknfpdikldnlitykkyeipqeksvegelkeqappl
seydqfpsyylhspkdslppnqtetlqedslppnqtetlpevslppnhietlpevslppn
qietlpevslppnhiekltdnssssqdpsss*ffkk*ink*inkeikk*ink*isfknki
iik

Frame B:
lsiffffnyy*ylcffny*yfcfyilf*llffyyffyfksftviinyltsskkqfhy*nn
k**tkneiyyiifyfifsf*yirifk*tscqefymhktiigiyi*y**yilfkmdffkfe
i*igf*m*k**qrknmycwyvh*yc*kftwsnkdvqn***wcirlpfelrrifskany*r
*l*tiyqrwsyyyerllfgswsnsllyyyp*yyignnr*yf**lyrchkfntrl*rwlwp
knysmak*f*i*fqsfksnh*kyfdrrfifyi---

---yksk*c*cntnydfsr**fnksn*l*kfk*ilnshilf*yskklwek*nynfnwrpt
npy*nll*itnniklfncfksnd*msw*ffklfrfi*kw*n*ntifkygnn**yskqsny
fye*fifipnearv*fk*yisycl**nfshilkli*lhrlnl*anllfstplvvny*lmv
kt*mkiqftihlyiafqinkfiivhl*tihlyhvilnc*vhsinfvksnlivkmriitfq
yhiilh*f*iqqrfqnhqlvelllflvmnfiikliqlqlvkvnv*tlhl*iqhrfhvl*n
lqililtklnnkknnmltl*lmvkvvvii**filviqllklkinqakviktttittivki
klmmkvklmvevcmkniknil*ql**svvwh*l*lplklyftliekmvl*signil*kkk
yinlkieksknv*mi*eky*imqrkiflt*n*ii**liksmkyhkkkv*ken*knkhll*
vnmtnfqaiiyihqkihylqiklkhykkilylqiklkhyqkfhylqiilkhyqkfhylqi
klkhyqkfhylqiilkn*qtihhhlktqalhnflknk*ink*ikk*rnk*inkfllkik*
**

Frame C:
yqyfffliiiniyvfliinifvfiyyfnyyffiiffisnhlq***ii*HPQKNNFIIKII
NSKPKMKYIILFFILYLVSDTLGSLNEPVVKNFTCTKQSLEYTYDIDSTYYSKWIFSNLK
YELVFECKNNSKERTCTAGMSIDIAKNLHGQIKMCRTDNNGVLDCHSNYEEYFPKPIIEG
DFKPSTKGGPTIMKGYYLAVGVIPYFTIIPDTILGTIGDIFSNSIDVTNLILDYKGGCGP
RTIQWPNDFKYSFNHSNPIIENILIEGSSFIS---

---INPNNVNATPIMIFQDNSSIKAIDYKNSNEYSTHTYSFDIPKSCGRNEITILIGDQL
TRTEIYYELPIISSCSIVSNQMIECLGNFLNYLDLFKNGKIKIQFSNMVIIDNIPNNPII
FMSDSFSFPMKPEYSSSDIYLIVCDETSPIF*s*ynsia*icepiscfqlhww*iin*w*
klk*kynlqyicillfk*tsl*lfiykqyiyim*y*ivrsirstl*nqi***r*e**hfn
iilssisfkfnndfkiinwwnyyyfw**il*sn*fnysw*k*mfklyiykfnidfmfcrt
fkf*y*pn*ttkktic*hyn*w*kww**fnnlfw*fny*s*ksikrk**kqqq*qq**k*
n***k*n*w*kfv*ki*kifysnynnr*fginyscl*nytll**kkwycslleiyykrkn
i*i*k*krakmyr*yernik*crekfs*hkir*fnnl*kv*nttrkkcrrrtkrtstssk
*i*piskllftftkrfitsksn*nitrrfftsksn*nitrsfitsksy*nitrsfitsks
n*nitrsfitsksy*ktnrqfiiisrpklfiif*kink*ink*rnkeink*inff*k*nn
nk

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15681-1 (Contig-U15681-1Q)
/CSM_Contig/Contig-U15681-1Q.Seq.d
(2628 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15681-1 (Contig-U15681-1Q) /CSM_Contig/Conti... 3511 0.0
Contig-U11405-1 (Contig-U11405-1Q) /CSM_Contig/Conti... 72 5e-12
Contig-U15540-1 (Contig-U15540-1Q) /CSM_Contig/Conti... 48 7e-05
Contig-U12147-1 (Contig-U12147-1Q) /CSM_Contig/Conti... 48 7e-05
Contig-U16053-1 (Contig-U16053-1Q) /CSM_Contig/Conti... 46 3e-04
Contig-U15784-1 (Contig-U15784-1Q) /CSM_Contig/Conti... 46 3e-04
Contig-U15713-1 (Contig-U15713-1Q) /CSM_Contig/Conti... 46 3e-04
Contig-U13905-1 (Contig-U13905-1Q) /CSM_Contig/Conti... 46 3e-04
Contig-U13321-1 (Contig-U13321-1Q) /CSM_Contig/Conti... 46 3e-04
Contig-U11707-1 (Contig-U11707-1Q) /CSM_Contig/Conti... 46 3e-04

>Contig-U15681-1 (Contig-U15681-1Q) /CSM_Contig/Contig-U15681-1Q.Seq.d
Length = 2628

Score = 3511 bits (1771), Expect = 0.0
Identities = 1817/1825 (99%)
Strand = Plus / Plus


Query: 233 agtttctgatacattaggatctttaaatgaaccagttgtcaagaattttacatgcacaaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agtttctgatacattaggatctttaaatgaaccagttgtcaagaattttacatgcacaaa 292


Query: 293 acaatcattggaatatacatatgatattgatagtacatattattcaaaatggattttttc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acaatcattggaatatacatatgatattgatagtacatattattcaaaatggattttttc 352


Query: 353 aaatttgaaatatgaattggtttttgaatgtaaaaataatagcaaagaaagaacatgtac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaatttgaaatatgaattggtttttgaatgtaaaaataatagcaaagaaagaacatgtac 412


Query: 413 tgctggtatgtccattgatattgctaaaaatttacatggtcaaataaagatgtgcagaac 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgctggtatgtccattgatattgctaaaaatttacatggtcaaataaagatgtgcagaac 472


Query: 473 tgataataatggtgtattagattgccattcgaattacgaagaatattttccaaagccaat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgataataatggtgtattagattgccattcgaattacgaagaatattttccaaagccaat 532


Query: 533 tattgaaggtgactttaaaccatctaccaaaggtggtcctactattatgaaaggttatta 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tattgaaggtgactttaaaccatctaccaaaggtggtcctactattatgaaaggttatta 592


Query: 593 tttggcagttggagtaattccttactttactattatccctgatactatattgggaacaat 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tttggcagttggagtaattccttactttactattatccctgatactatattgggaacaat 652


Query: 653 aggtgatatttttagtaactctatagatgtcacaaatttaatactagactataaaggtgg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aggtgatatttttagtaactctatagatgtcacaaatttaatactagactataaaggtgg 712


Query: 713 ttgtggcccaagaactattcaatggccaaatgattttaaatatagtttcaatcattcaaa 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttgtggcccaagaactattcaatggccaaatgattttaaatatagtttcaatcattcaaa 772


Query: 773 tccaatcattgaaaatattttgatagaaggttcatcttttatatcannnnnnnnnnatat 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tccaatcattgaaaatattttgatagaaggttcatcttttatatcannnnnnnnnnatat 832


Query: 833 aaatccaaataatgttaatgcaacaccaattatgatttttcaagataatagttcaataaa 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 aaatccaaataatgttaatgcaacaccaattatgatttttcaagataatagttcaataaa 892


Query: 893 agcaattgattataaaaattcaaatgaatactcaactcacacatactcttttgatattcc 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 agcaattgattataaaaattcaaatgaatactcaactcacacatactcttttgatattcc 952


Query: 953 aaaaagttgtgggagaaatgaaattacaattttaattggagaccaactaacccgtactga 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 aaaaagttgtgggagaaatgaaattacaattttaattggagaccaactaacccgtactga 1012


Query: 1013 aatttattatgaattaccaataatatcaagttgttcaattgtttcaaatcaaatgattga 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 aatttattatgaattaccaataatatcaagttgttcaattgtttcaaatcaaatgattga 1072


Query: 1073 atgtcttggtaattttttaaattatttagatttatttaaaaatggtaaaattaaaataca 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 atgtcttggtaattttttaaattatttagatttatttaaaaatggtaaaattaaaataca 1132


Query: 1133 attttcaaatatggtaataattgataatattccaaacaatccaattatttttatgagtga 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 attttcaaatatggtaataattgataatattccaaacaatccaattatttttatgagtga 1192


Query: 1193 ttcattttcattcccaatgaagccagagtatagttcaagtgatatatatcttattgtttg 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 ttcattttcattcccaatgaagccagagtatagttcaagtgatatatatcttattgtttg 1252


Query: 1253 tgatgaaacttctcccatattttaaagttgatataactccatcgcttaaatttgtgagcc 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 tgatgaaacttctcccatattttaaagttgatataactccatcgcttaaatttgtgagcc 1312


Query: 1313 aatctcttgttttcaactccactggtggtgaattattaattaatggtgaaaacttaaatg 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 aatctcttgttttcaactccactggtggtgaattattaattaatggtgaaaacttaaatg 1372


Query: 1373 aaaatacaatttacaatacatctgtatattgcttttcaaataaacaagtttataattgtt 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 aaaatacaatttacaatacatctgtatattgcttttcaaataaacaagtttataattgtt 1432


Query: 1433 catttataaacaatacatctatatcatgtgatattgaattgttaggtccattcgatcaac 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 catttataaacaatacatctatatcatgtgatattgaattgttaggtccattcgatcaac 1492


Query: 1493 tttgtaaaatcaaatttaatagtaaagatgagaataataacatttcaatatcatattatc 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 tttgtaaaatcaaatttaatagtaaagatgagaataataacatttcaatatcatattatc 1552


Query: 1553 ctccattagttttaaattcaacaacgatttcaaaatcatcaactggtggaattattacta 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 ctccattagttttaaattcaacaacgatttcaaaatcatcaactggtggaattattacta 1612


Query: 1613 tttttggtaatgaattttataatcaaattgattcaattacagttggtaaaagtaaatgtt 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tttttggtaatgaattttataatcaaattgattcaattacagttggtaaaagtaaatgtt 1672


Query: 1673 taaactctacatttataaattcaacatcgatttcatgttttgtagaaccttcaaatttta 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 taaactctacatttataaattcaacatcgatttcatgttttgtagaaccttcaaatttta 1732


Query: 1733 atattaaccaaactgaacaacnnnnnnnncaatatgttaacattataattaatggtaaaa 1792
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1733 atattaaccaaactgaacaacaaaaaaaacaatatgttaacattataattaatggtaaaa 1792


Query: 1793 gtggtggtaataatttaataatttattctggtaattcaattattgaagttaaaaatcaat 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 gtggtggtaataatttaataatttattctggtaattcaattattgaagttaaaaatcaat 1852


Query: 1853 caagcgaaagtgataaaaacaacaacaataacaacaatagtaaaaataaaattaatgatg 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 caagcgaaagtgataaaaacaacaacaataacaacaatagtaaaaataaaattaatgatg 1912


Query: 1913 aaagtaaaactgatggtagaagtttgtatgaaaaatataaaaaatattttatagcaacta 1972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1913 aaagtaaaactgatggtagaagtttgtatgaaaaatataaaaaatattttatagcaacta 1972


Query: 1973 taataatcggtagtttggcattaattatagttgcctttaaaattatactttactttaata 2032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 taataatcggtagtttggcattaattatagttgcctttaaaattatactttactttaata 2032


Query: 2033 gaaaaaatggtactgtagtctattg 2057
|||||||||||||||||||||||||
Sbjct: 2033 gaaaaaatggtactgtagtctattg 2057


Score = 850 bits (429), Expect = 0.0
Identities = 429/429 (100%)
Strand = Plus / Plus


Query: 2112 atgtatagatgatatgagagaaatattaaataatgcagagaaaaattttcctgacataaa 2171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 atgtatagatgatatgagagaaatattaaataatgcagagaaaaattttcctgacataaa 2171


Query: 2172 attagataatttaataacttataaaaagtatgaaataccacaagaaaaaagtgtagaagg 2231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172 attagataatttaataacttataaaaagtatgaaataccacaagaaaaaagtgtagaagg 2231


Query: 2232 agaactaaaagaacaagcacctcctctaagtgaatatgaccaatttccaagctattattt 2291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2232 agaactaaaagaacaagcacctcctctaagtgaatatgaccaatttccaagctattattt 2291


Query: 2292 acattcaccaaaagattcattacctccaaatcaaactgaaacattacaagaagattcttt 2351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 acattcaccaaaagattcattacctccaaatcaaactgaaacattacaagaagattcttt 2351


Query: 2352 acctccaaatcaaactgaaacattaccagaagtttcattacctccaaatcatattgaaac 2411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352 acctccaaatcaaactgaaacattaccagaagtttcattacctccaaatcatattgaaac 2411


Query: 2412 attaccagaagtttcattacctccaaatcaaattgaaacattaccagaagtttcattacc 2471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 attaccagaagtttcattacctccaaatcaaattgaaacattaccagaagtttcattacc 2471


Query: 2472 tccaaatcatattgaaaaactaacagacaattcatcatcatctcaagacccaagctcttc 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 tccaaatcatattgaaaaactaacagacaattcatcatcatctcaagacccaagctcttc 2531


Query: 2532 ataattttt 2540
|||||||||
Sbjct: 2532 ataattttt 2540


Score = 133 bits (67), Expect = 2e-30
Identities = 81/88 (92%)
Strand = Plus / Plus


Query: 115 caaatcatttacagtaataataaattatttaacatcctcnnnnnnncaatttcattatta 174
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 115 caaatcatttacagtaataataaattatttaacatcctcaaaaaaacaatttcattatta 174


Query: 175 aaataataaatagtaaaccaaaaatgaa 202
||||||||||||||||||||||||||||
Sbjct: 175 aaataataaatagtaaaccaaaaatgaa 202


>Contig-U11405-1 (Contig-U11405-1Q) /CSM_Contig/Contig-U11405-1Q.Seq.d
Length = 1328

Score = 71.9 bits (36), Expect = 5e-12
Identities = 63/72 (87%)
Strand = Plus / Plus


Query: 1564 ttaaattcaacaacgatttcaaaatcatcaactggtggaattattactatttttggtaat 1623
||||| ||||||| ||||||||| ||||||| ||| || ||||| || |||||||| |||
Sbjct: 557 ttaaactcaacaatgatttcaaattcatcaattgggggtattatcacaatttttggaaat 616


Query: 1624 gaattttataat 1635
||||||||||||
Sbjct: 617 gaattttataat 628


Score = 34.2 bits (17), Expect = 1.1
Identities = 26/29 (89%)
Strand = Plus / Plus


Query: 1790 aaagtggtggtaataatttaataatttat 1818
||||||||||||| ||||||| ||||||
Sbjct: 781 aaagtggtggtaactatttaatgatttat 809


>Contig-U15540-1 (Contig-U15540-1Q) /CSM_Contig/Contig-U15540-1Q.Seq.d
Length = 3936

Score = 48.1 bits (24), Expect = 7e-05
Identities = 30/32 (93%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaatagtaaaaataa 1901
||||||||||| |||||||||||||| |||||
Sbjct: 1233 aacaacaacaacaacaacaatagtaataataa 1264


Score = 48.1 bits (24), Expect = 7e-05
Identities = 30/32 (93%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaatagtaaaaataa 1901
||||||||||| |||||||||||||| |||||
Sbjct: 2660 aacaacaacaacaacaacaatagtaataataa 2691


Score = 38.2 bits (19), Expect = 0.068
Identities = 28/31 (90%)
Strand = Plus / Plus


Query: 1865 ataaaaacaacaacaataacaacaatagtaa 1895
|||| |||||||||||||| |||||| ||||
Sbjct: 1345 ataataacaacaacaataataacaatggtaa 1375


Score = 34.2 bits (17), Expect = 1.1
Identities = 23/25 (92%)
Strand = Plus / Plus


Query: 1865 ataaaaacaacaacaataacaacaa 1889
|||| ||||||||||| ||||||||
Sbjct: 1213 ataacaacaacaacaacaacaacaa 1237


Score = 34.2 bits (17), Expect = 1.1
Identities = 23/25 (92%)
Strand = Plus / Plus


Query: 1865 ataaaaacaacaacaataacaacaa 1889
|||| ||||||||||| ||||||||
Sbjct: 1210 ataataacaacaacaacaacaacaa 1234


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
||||||||||| ||||||||
Sbjct: 1227 aacaacaacaacaacaacaa 1246


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
||||||||||| ||||||||
Sbjct: 2657 aacaacaacaacaacaacaa 2676


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
|||||||||||| |||||||
Sbjct: 1456 aacaacaacaattacaacaa 1475


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
||||||||||| ||||||||
Sbjct: 3002 aacaacaacaacaacaacaa 3021


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
||||||||||| ||||||||
Sbjct: 1230 aacaacaacaacaacaacaa 1249


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
||||||||||| ||||||||
Sbjct: 1221 aacaacaacaacaacaacaa 1240


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
||||||||||| ||||||||
Sbjct: 1666 aacaacaacaacaacaacaa 1685


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
|||||||||||| |||||||
Sbjct: 1501 aacaacaacaattacaacaa 1520


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
|||||||||||| |||||||
Sbjct: 1486 aacaacaacaattacaacaa 1505


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
||||||||||| ||||||||
Sbjct: 1429 aacaacaacaacaacaacaa 1448


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
|||||||||||| |||||||
Sbjct: 2792 aacaacaacaattacaacaa 2811


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
||||||||||| ||||||||
Sbjct: 1224 aacaacaacaacaacaacaa 1243


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
|||||||||||| |||||||
Sbjct: 2822 aacaacaacaattacaacaa 2841


Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1870 aacaacaacaataacaacaa 1889
|||||||||||| |||||||
Sbjct: 2837 aacaacaacaattacaacaa 2856


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,568
Number of Sequences: 8402
Number of extensions: 90568
Number of successful extensions: 14668
Number of sequences better than 10.0: 1104
length of query: 2628
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2611
effective length of database: 7,932,708
effective search space: 20712300588
effective search space used: 20712300588
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2. 6
Homology vs DNA
Query= Contig-U15681-1 (Contig-U15681-1Q) /CSM_Contig/Contig-U15681-1Q.Seq.d
(2628 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ330493) Dictyostelium discoideum cDNA clone:dda31a23, 5' ... 1158 0.0 1
(BJ335907) Dictyostelium discoideum cDNA clone:dda52b04, 5' ... 1152 0.0 1
(BJ356017) Dictyostelium discoideum cDNA clone:dda59a01, 3' ... 957 0.0 3
(BJ354622) Dictyostelium discoideum cDNA clone:dda54a07, 3' ... 854 0.0 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 438 0.0 12
(BJ408026) Dictyostelium discoideum cDNA clone:dds44o10, 3' ... 765 0.0 3
(BJ334953) Dictyostelium discoideum cDNA clone:dda48k09, 5' ... 928 0.0 2
(BJ381521) Dictyostelium discoideum cDNA clone:ddc41d24, 3' ... 848 0.0 2
(BJ339162) Dictyostelium discoideum cDNA clone:dda64j12, 5' ... 924 0.0 2
(BJ394384) Dictyostelium discoideum cDNA clone:dds34m23, 5' ... 922 0.0 2
(BJ352803) Dictyostelium discoideum cDNA clone:dda47p21, 3' ... 749 0.0 3
(BJ333125) Dictyostelium discoideum cDNA clone:dda41d18, 5' ... 922 0.0 2
(BJ334027) Dictyostelium discoideum cDNA clone:dda44i21, 5' ... 910 0.0 2
(BJ356559) Dictyostelium discoideum cDNA clone:dda60o17, 3' ... 880 0.0 2
(BJ397540) Dictyostelium discoideum cDNA clone:dds46n15, 5' ... 916 0.0 2
(BJ331022) Dictyostelium discoideum cDNA clone:dda33j13, 5' ... 904 0.0 2
(BJ335546) Dictyostelium discoideum cDNA clone:dda50l13, 5' ... 918 0.0 2
(BJ339100) Dictyostelium discoideum cDNA clone:dda64k03, 5' ... 930 0.0 1
(BJ336025) Dictyostelium discoideum cDNA clone:dda52p07, 5' ... 930 0.0 1
(BJ354819) Dictyostelium discoideum cDNA clone:dda54i21, 3' ... 749 0.0 4
(BJ333585) Dictyostelium discoideum cDNA clone:dda43b12, 5' ... 922 0.0 1
(BJ328232) Dictyostelium discoideum cDNA clone:dda23m12, 5' ... 502 0.0 4
(BJ353275) Dictyostelium discoideum cDNA clone:dda49g16, 3' ... 827 0.0 2
(BJ348361) Dictyostelium discoideum cDNA clone:dda33b02, 3' ... 825 0.0 2
(BJ368418) Dictyostelium discoideum cDNA clone:ddc46k13, 5' ... 835 0.0 2
(BJ332572) Dictyostelium discoideum cDNA clone:dda39h16, 5' ... 821 0.0 2
(BJ330527) Dictyostelium discoideum cDNA clone:dda31i19, 5' ... 819 0.0 2
(BJ350129) Dictyostelium discoideum cDNA clone:dda38g21, 3' ... 787 0.0 2
(BJ357012) Dictyostelium discoideum cDNA clone:dda62m05, 3' ... 739 0.0 2
(BJ347993) Dictyostelium discoideum cDNA clone:dda31i19, 3' ... 749 0.0 2
(BJ352927) Dictyostelium discoideum cDNA clone:dda48k09, 3' ... 728 0.0 2
(BJ324082) Dictyostelium discoideum cDNA clone:dda4m14, 5' e... 749 0.0 3
(BJ350362) Dictyostelium discoideum cDNA clone:dda39h16, 3' ... 704 0.0 3
(BJ349403) Dictyostelium discoideum cDNA clone:dda36k10, 3' ... 708 0.0 2
(BJ353597) Dictyostelium discoideum cDNA clone:dda50f21, 3' ... 404 0.0 3
(BJ367205) Dictyostelium discoideum cDNA clone:ddc41d24, 5' ... 688 0.0 3
(BJ369381) Dictyostelium discoideum cDNA clone:ddc50i10, 5' ... 698 0.0 2
(BJ350951) Dictyostelium discoideum cDNA clone:dda41d18, 3' ... 505 0.0 5
(BJ357953) Dictyostelium discoideum cDNA clone:dda65d08, 3' ... 517 0.0 3
(BJ331951) Dictyostelium discoideum cDNA clone:dda37m16, 5' ... 404 0.0 5
(BJ332049) Dictyostelium discoideum cDNA clone:dda37c04, 5' ... 404 0.0 5
(BJ332264) Dictyostelium discoideum cDNA clone:dda38c16, 5' ... 404 0.0 5
(BJ330856) Dictyostelium discoideum cDNA clone:dda33b02, 5' ... 404 0.0 5
(BJ330308) Dictyostelium discoideum cDNA clone:dda31g06, 5' ... 404 0.0 5
(BJ332912) Dictyostelium discoideum cDNA clone:dda40g08, 5' ... 404 0.0 5
(BJ334830) Dictyostelium discoideum cDNA clone:dda47p21, 5' ... 414 0.0 2
(BJ332354) Dictyostelium discoideum cDNA clone:dda38g21, 5' ... 404 0.0 5
(BJ337729) Dictyostelium discoideum cDNA clone:dda58c13, 5' ... 404 0.0 5
(BJ335269) Dictyostelium discoideum cDNA clone:dda49g16, 5' ... 404 0.0 5
(BJ334879) Dictyostelium discoideum cDNA clone:dda48k05, 5' ... 398 0.0 5
(BJ347959) Dictyostelium discoideum cDNA clone:dda31a23, 3' ... 613 0.0 3
(BJ353947) Dictyostelium discoideum cDNA clone:dda52b04, 3' ... 545 0.0 4
(BJ355875) Dictyostelium discoideum cDNA clone:dda58c13, 3' ... 595 0.0 2
(BJ353560) Dictyostelium discoideum cDNA clone:dda50l13, 3' ... 565 0.0 2
(BJ333591) Dictyostelium discoideum cDNA clone:dda43d09, 5' ... 404 e-174 5
(BJ338268) Dictyostelium discoideum cDNA clone:dda60p17, 5' ... 404 e-172 5
(BJ353124) Dictyostelium discoideum cDNA clone:dda49f05, 3' ... 331 e-160 6
(BJ409283) Dictyostelium discoideum cDNA clone:dds40g18, 3' ... 476 e-152 2
(BJ337792) Dictyostelium discoideum cDNA clone:dda59b01, 5' ... 492 e-146 2
(BJ380100) Dictyostelium discoideum cDNA clone:ddc37c03, 3' ... 515 e-141 1
(BJ338662) Dictyostelium discoideum cDNA clone:dda62b15, 5' ... 486 e-132 1
(BJ354081) Dictyostelium discoideum cDNA clone:dda52p07, 3' ... 466 e-129 2
(BJ348708) Dictyostelium discoideum cDNA clone:dda34h02, 3' ... 466 e-129 2
(BJ408707) Dictyostelium discoideum cDNA clone:dds46n15, 3' ... 466 e-129 2
(BJ357687) Dictyostelium discoideum cDNA clone:dda64j12, 3' ... 466 e-129 2
(BJ351865) Dictyostelium discoideum cDNA clone:dda44i21, 3' ... 385 e-128 3
(BJ351386) Dictyostelium discoideum cDNA clone:dda43b12, 3' ... 317 e-126 4
(BJ357112) Dictyostelium discoideum cDNA clone:dda62b15, 3' ... 375 e-126 3
(BJ406335) Dictyostelium discoideum cDNA clone:dds34m23, 3' ... 442 e-122 2
(BJ330721) Dictyostelium discoideum cDNA clone:dda32c18, 5' ... 371 e-112 2
(BJ348209) Dictyostelium discoideum cDNA clone:dda32c18, 3' ... 353 e-111 5
(BJ383025) Dictyostelium discoideum cDNA clone:ddc46k13, 3' ... 400 e-109 2
(BJ384687) Dictyostelium discoideum cDNA clone:ddc50i10, 3' ... 353 e-109 3
(BJ348558) Dictyostelium discoideum cDNA clone:dda33j13, 3' ... 353 e-108 3
(BJ340984) Dictyostelium discoideum cDNA clone:dda4m14, 3' e... 353 e-108 3
(G65016) DH0229 Dictyostelium discoideum ( P.Dear ) Dictyost... 331 8e-86 1
(BJ338594) Dictyostelium discoideum cDNA clone:dda62m05, 5' ... 329 3e-85 1
(AU072181) Dictyostelium discoideum slug cDNA, clone SSD611. 283 2e-71 1
(BJ335582) Dictyostelium discoideum cDNA clone:dda50f21, 5' ... 170 5e-68 4
(BJ345349) Dictyostelium discoideum cDNA clone:dda23m12, 3' ... 137 2e-27 1
(AU037415) Dictyostelium discoideum slug cDNA, clone SSD611. 98 2e-15 1
(BJ353205) Dictyostelium discoideum cDNA clone:dda49g12, 3' ... 42 6e-14 6
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 46 8e-12 15
(BJ351226) Dictyostelium discoideum cDNA clone:dda42a13, 3' ... 72 5e-10 2
(BJ341785) Dictyostelium discoideum cDNA clone:dda8l05, 3' e... 46 1e-08 4
(BJ355887) Dictyostelium discoideum cDNA clone:dda58e16, 3' ... 46 1e-08 4
(BJ407204) Dictyostelium discoideum cDNA clone:dds37f19, 3' ... 46 1e-08 4
(BJ353902) Dictyostelium discoideum cDNA clone:dda51g20, 3' ... 46 1e-08 4
(BJ395897) Dictyostelium discoideum cDNA clone:dds40g18, 5' ... 66 7e-06 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.004 23
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 0.005 13
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.009 16
(BX248583) Blochmannia floridanus complete genome. 36 0.026 22
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 36 0.042 24
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.049 20
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 0.17 17
(DX379565) 3B_108_G11_FM1 Triticum aestivum chromosome 3B-sp... 38 0.32 2
(AM478647) Vitis vinifera contig VV78X155320.9, whole genome... 42 0.32 4
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.36 24
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 32 0.49 20
(BX088545) Zebrafish DNA sequence from clone DKEY-60G19 in l... 34 0.61 12
(AB120422) Helicobacter pylori genes for cag pathogenicity i... 40 0.64 2
(AB120421) Helicobacter pylori genes for cag pathogenicity i... 40 0.65 2
(AM430430) Vitis vinifera contig VV78X047414.4, whole genome... 34 0.86 6
(AM932684) Triticum aestivum 3B chromosome, clone BAC TA3B95C9. 36 0.89 2
(CT526016) A BAC library has been constructed from cultivar ... 38 0.89 2
(AM422018) Candidatus Phytoplasma australiense complete genome. 32 1.1 24
(ER777886) TAACSP3AShA_0105A19R TAACSP3AShA Triticum aestivu... 36 1.2 2
(CO186534) EK020732.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 40 1.2 2
(AZ693441) ENTIU57TR Entamoeba histolytica Sheared DNA Entam... 40 1.4 3
(AM427172) Vitis vinifera contig VV78X032012.3, whole genome... 32 1.5 6
(EF622227) Saturnia boisduvalii mitochondrion, complete genome. 32 1.6 8
(AC157791) Mus musculus chromosome 3, clone RP24-176D22, com... 48 1.7 1
(AC116732) Mus musculus chromosome 3, clone RP23-347F4, comp... 48 1.7 1
(AC129998) Rattus norvegicus clone CH230-326F4, WORKING DRAF... 48 1.7 1
(AC129423) Rattus norvegicus clone CH230-125C18, WORKING DRA... 48 1.7 1
(AC123237) Rattus norvegicus clone CH230-146N10, WORKING DRA... 48 1.7 1
(AC110108) Rattus norvegicus clone CH230-100K5, *** SEQUENCI... 48 1.7 1
(AC109673) Rattus norvegicus clone CH230-95B2, *** SEQUENCIN... 48 1.7 1
(AC096078) Rattus norvegicus clone CH230-33J21, *** SEQUENCI... 48 1.7 1
(CU915619) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.7 1
(CU855511) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.7 1
(CZ547555) SRAA-aad74f10.g1 Strongyloides ratti whole genome... 48 1.7 1
(CT352725) Sus scrofa genomic clone CH242-453D14, genomic su... 48 1.7 1
(CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 48 1.7 1
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 1.9 12
(CU929264) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 2.5 6
(AC218052) Solanum lycopersicum chromosome 1 clone C01HBa000... 34 2.6 9
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co... 38 2.7 7
(AC144405) Medicago truncatula clone mth2-16m18, WORKING DRA... 46 2.9 4
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 3.2 15
(CU655896) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.3 2
(CR112811) Forward strand read from insert in 5'HPRT inserti... 42 3.3 2
(CT009654) Medicago truncatula chromosome 5 clone mth2-17c15... 34 3.4 2
(CU326390) Medicago truncatula chromosome 5 clone mth2-171d1... 34 3.4 2
(AE017308) Mycoplasma mobile 163K complete genome. 34 3.7 22
(EK209342) 1095460093010 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.9 2
(AF291051) Carsonella ruddii cell division protein (gidA) ge... 34 4.0 6
(FH355580) CHO_OF4673xp11f1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 4.4 2
(EJ158618) 1092344039325 Global-Ocean-Sampling_GS-27-01-01-1... 42 4.4 2
(AC116989) Dictyostelium discoideum chromosome 2 map 4545040... 38 4.5 3
(EJ678231) 1092955106370 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.5 3
(EK167737) 1095458060463 Global-Ocean-Sampling_GS-31-01-01-1... 34 4.5 2
(EK438612) 1095521353970 Global-Ocean-Sampling_GS-31-01-01-1... 46 4.5 2
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 32 4.6 15
(AC230630) Bos taurus clone CH240-503H5, WORKING DRAFT SEQUE... 36 4.6 8
(EJ722350) 1092959460520 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.8 3
(AJ748296) Sulfolobus islandicus rudivirus 1 variant XX, com... 36 5.0 7
(AC009206) Drosophila melanogaster clone BACR15A11, complete... 34 6.3 11
(BX936364) Zebrafish DNA sequence from clone CH211-247G11 in... 32 6.3 11
(AE000794) Borrelia burgdorferi B31 plasmid lp28-1, complete... 36 6.5 6
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 34 6.6 16
(BX323075) Zebrafish DNA sequence from clone CH211-230C4 in ... 36 6.6 10
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 6.7 16
(CR384057) Zebrafish DNA sequence from clone CH211-243K10 in... 34 6.7 10
(AL805928) Mouse DNA sequence from clone RP23-136C12 on chro... 46 6.7 1
(AC100953) Mus musculus chromosome 5, clone RP23-73P16, comp... 46 6.7 1
(AC206054) Pan troglodytes BAC clone CH251-172N23 from chrom... 46 6.7 1
(AR547046) Sequence 2177 from patent US 6747137. 46 6.7 1
(AC083869) Homo sapiens chromosome 7 clone RP11-733N14, comp... 46 6.7 1
(AC004934) Homo sapiens PAC clone RP5-953B5 from 7, complete... 46 6.7 1
(AC160197) Bos taurus clone CH240-83P2, WORKING DRAFT SEQUEN... 46 6.7 1
(AC119423) Papio anubis clone rp41-199n8, WORKING DRAFT SEQU... 46 6.7 1
(AC115856) Mus musculus clone RP24-279B12, WORKING DRAFT SEQ... 46 6.7 1
(CU928139) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.7 1
(AC229715) Medicago truncatula clone mth2-106i22, WORKING DR... 46 6.7 1
(AC184193) Strongylocentrotus purpuratus clone R3-3020E7, WO... 46 6.7 1
(AC164993) Bos taurus clone CH240-167L18, WORKING DRAFT SEQU... 46 6.7 1
(AQ719975) HS_5541_A2_A09_SP6E RPCI-11 Human Male BAC Librar... 46 6.7 1
(FH973384) CHO_OF6815xe01r1.ab1 CHO_OF6 Nicotiana tabacum ge... 46 6.7 1
(EK155734) 1095458004210 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.7 1
(EJ932904) 1093018815568 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.7 1
(EJ853264) 1093017902020 Global-Ocean-Sampling_GS-30-02-01-1... 46 6.7 1
(EJ236452) 1095293060499 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.7 1
(EI798099) MUGQ_CH252P516A21T7_GL513_095 CHORI-252 Vervet Mo... 46 6.7 1
(AG321189) Mus musculus molossinus DNA, clone:MSMg01-107F16.... 46 6.7 1
(ES624638) NGPPU87TR NGPP Nasonia giraulti cDNA, mRNA sequence. 46 6.7 1
(ES621835) NGPEE16TR NGPA Nasonia giraulti cDNA, mRNA sequence. 46 6.7 1
(CR519810) RZPD Mus musculus cDNA clone LIONp462F04369 3' EST. 46 6.7 1
(CN775769) tae77c01.x1 Hydra EST Darmstadt I Hydra magnipapi... 46 6.7 1
(CN628416) tae95g07.x1 Hydra EST Darmstadt I Hydra magnipapi... 46 6.7 1
(CK526893) rswfa0_003811.y1 swf Bombyx mori cDNA, mRNA seque... 46 6.7 1
(CK522003) rswea0_007062.y1 swe Bombyx mori cDNA, mRNA seque... 46 6.7 1
(BJ836146) Misgurnus anguillicaudatus cDNA clone:dj29i06, 3'... 46 6.7 1
(BJ824900) Misgurnus anguillicaudatus cDNA clone:dj29i06, 5'... 46 6.7 1
(BB983715) Bombyx mori mRNA, EST clone:ovS3024C03r, 3' end s... 46 6.7 1
(GE395640) 293778587 Nasonia vitripennis Female Pupae Nasoni... 46 6.7 1
(GE311876) OXAZ-aaa60a04.b1 Oxytricha_pSMART_OXAZ Sterkiella... 46 6.7 1
(GE309251) OXAZ-aaa64c06.b1 Oxytricha_pSMART_OXAZ Sterkiella... 46 6.7 1
(EV428600) 210778819 NVP Nasonia vitripennis cDNA clone 197A... 46 6.7 1
(EV427369) 210767962 NVP Nasonia vitripennis cDNA clone 191E... 46 6.7 1
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 7.4 19
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 7.4 23
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 30 7.5 20
(EF136888) Acaulospora sp. ACAred clone AcaR7 18S small subu... 38 7.6 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 8.3 15
(AJ438724) Dyscia penulataria mitochondrion nd1 gene (partia... 34 8.5 3
(AC231696) Choloepus hoffmanni clone CH281-201A18, WORKING D... 44 8.7 6
(EF428478) Grumichella flaveola voucher NRM BH1 cytochrome c... 36 8.9 2
(AJ438737) Dyscia penulataria mitochondrion nd1 gene (partia... 34 8.9 3
(AJ438736) Dyscia penulataria mitochondrion nd1 gene (partia... 34 9.0 3
(ER470429) 1092963950744 Global-Ocean-Sampling_GS-35-01-01-1... 34 9.1 4
(U80032) Caenorhabditis elegans cosmid C32E12, complete sequ... 40 9.5 5
(AC170322) Bos taurus clone CH240-261K11, WORKING DRAFT SEQU... 34 9.5 7
(ET080638) QM0AAC1AC09RM1 CCH3 Citrus clementina genomic clo... 40 9.8 2

>(BJ330493) Dictyostelium discoideum cDNA clone:dda31a23, 5' end,
single read.
Length = 636

Score = 1158 bits (584), Expect = 0.0
Identities = 584/584 (100%)
Strand = Plus / Plus


Query: 234 gtttctgatacattaggatctttaaatgaaccagttgtcaagaattttacatgcacaaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 gtttctgatacattaggatctttaaatgaaccagttgtcaagaattttacatgcacaaaa 112


Query: 294 caatcattggaatatacatatgatattgatagtacatattattcaaaatggattttttca 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 caatcattggaatatacatatgatattgatagtacatattattcaaaatggattttttca 172


Query: 354 aatttgaaatatgaattggtttttgaatgtaaaaataatagcaaagaaagaacatgtact 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aatttgaaatatgaattggtttttgaatgtaaaaataatagcaaagaaagaacatgtact 232


Query: 414 gctggtatgtccattgatattgctaaaaatttacatggtcaaataaagatgtgcagaact 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gctggtatgtccattgatattgctaaaaatttacatggtcaaataaagatgtgcagaact 292


Query: 474 gataataatggtgtattagattgccattcgaattacgaagaatattttccaaagccaatt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gataataatggtgtattagattgccattcgaattacgaagaatattttccaaagccaatt 352


Query: 534 attgaaggtgactttaaaccatctaccaaaggtggtcctactattatgaaaggttattat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 attgaaggtgactttaaaccatctaccaaaggtggtcctactattatgaaaggttattat 412


Query: 594 ttggcagttggagtaattccttactttactattatccctgatactatattgggaacaata 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttggcagttggagtaattccttactttactattatccctgatactatattgggaacaata 472


Query: 654 ggtgatatttttagtaactctatagatgtcacaaatttaatactagactataaaggtggt 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggtgatatttttagtaactctatagatgtcacaaatttaatactagactataaaggtggt 532


Query: 714 tgtggcccaagaactattcaatggccaaatgattttaaatatagtttcaatcattcaaat 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgtggcccaagaactattcaatggccaaatgattttaaatatagtttcaatcattcaaat 592


Query: 774 ccaatcattgaaaatattttgatagaaggttcatcttttatatc 817
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ccaatcattgaaaatattttgatagaaggttcatcttttatatc 636

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,869,715,218
Number of extensions: 180768943
Number of successful extensions: 14849803
Number of sequences better than 10.0: 210
Length of query: 2628
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2603
Effective length of database: 96,311,147,814
Effective search space: 250697917759842
Effective search space used: 250697917759842
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.17
Homology vs Protein
Query= Contig-U15681-1 (Contig-U15681-1Q) /CSM_Contig/Contig-U15681-1Q.Seq.d
(2628 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso... 182 3e-61
AC117176_5(AC117176|pid:none) Dictyostelium discoideum chromosom... 92 1e-16
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso... 68 2e-09
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom... 54 2e-05
FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS... 50 3e-04
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS... 50 3e-04
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS... 50 3e-04
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS... 49 7e-04
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS... 46 0.008
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS... 46 0.008
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS... 46 0.008
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS... 46 0.008
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS... 46 0.008
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS... 46 0.008
I58157(I58157)periaxin - rat 44 0.039
AF072188_1(AF072188|pid:none) Oryzias latipes clone FS30-2 chori... 44 0.039
AP005891_10(AP005891|pid:none) Oryza sativa Japonica Group genom... 44 0.039
(Q9BXM0) RecName: Full=Periaxin; &AF321191_1(AF321191|pid:none)... 44 0.039
AX399898_1(AX399898|pid:none) Sequence 69 from Patent WO0218424. 44 0.039
(O88799) RecName: Full=Zonadhesin; Flags: Precursor; &T42215(T4... 42 0.11
AE014296_1854(AE014296|pid:none) Drosophila melanogaster chromos... 42 0.11
CU468132_28(CU468132|pid:none) Erwinia tasmaniensis strain ET1/9... 42 0.15
CP001020_1852(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co... 41 0.20
(O55103) RecName: Full=Periaxin; &AJ222968_1(AJ222968|pid:none) 41 0.26
BC068135_1(BC068135|pid:none) Mus musculus periaxin, mRNA (cDNA ... 41 0.26
EF084791_1(EF084791|pid:none) Picea sitchensis clone WS02811_N01... 41 0.26
AM420293_827(AM420293|pid:none) Saccharopolyspora erythraea NRRL... 41 0.26
CP001287_3329(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 40 0.44
EU956023_1(EU956023|pid:none) Zea mays clone 1555726 vegetative ... 39 0.74
AB290926_1(AB290926|pid:none) Mus musculus PKD1L3 mRNA for polyc... 39 0.97
DQ382346_1(DQ382346|pid:none) Mus musculus polycystic kidney dis... 39 0.97
(Q2EG98) RecName: Full=Polycystic kidney disease protein 1-like ... 39 0.97
CP000158_2381(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 39 1.3
EF571445_1(EF571445|pid:none) Heterorhabditis bacteriophora c4c0... 39 1.3
(P41479) RecName: Full=Uncharacterized 24.1 kDa protein in LEF4-... 39 1.3
AC116982_4(AC116982|pid:none) Dictyostelium discoideum chromosom... 38 1.7
AP008217_1406(AP008217|pid:none) Oryza sativa (japonica cultivar... 38 1.7
T22808(T22808)hypothetical protein F56H9.1 - Caenorhabditis eleg... 38 1.7
AL391144_16(AL391144|pid:none) Arabidopsis thaliana DNA chromoso... 38 2.2
AP008931_80(AP008931|pid:none) Rhodococcus erythropolis PR4 plas... 38 2.2
(A6RCJ9) RecName: Full=ATP-dependent RNA helicase MRH4, mitochon... 37 2.8
CP001337_1628(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 37 2.8
AM910985_32(AM910985|pid:none) Plasmodium knowlesi strain H chro... 37 2.8
CP000733_1938(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 37 2.8
AC117072_63(AC117072|pid:none) Dictyostelium discoideum chromoso... 37 3.7
AK298598_1(AK298598|pid:none) Homo sapiens cDNA FLJ60783 complet... 37 3.7
BT054243_1(BT054243|pid:none) Zea mays full-length cDNA clone ZM... 37 3.7
FJ525883_1(FJ525883|pid:none) Homo sapiens titin (TTN) gene, com... 37 3.7
CP000828_2211(CP000828|pid:none) Acaryochloris marina MBIC11017,... 37 3.7
AJ845083_54(AJ845083|pid:none) Streptomyces tenjimariensis istam... 37 3.7
(Q9Y6L9) RecName: Full=Titin; EC=2.7.11.1; AltName: Ful... 37 3.7
AJ277892_1(AJ277892|pid:none) Homo sapiens partial TTN gene for ... 37 3.7
DQ825490_1(DQ825490|pid:none) HIV-1 isolate 03GH_NSU26 from Ghan... 37 4.8
AK163992_1(AK163992|pid:none) Mus musculus ES cells cDNA, RIKEN ... 37 4.8
FM992688_1124(FM992688|pid:none) Candida dubliniensis CD36 chrom... 37 4.8
BC129916_1(BC129916|pid:none) Mus musculus RAD21 homolog (S. pom... 37 4.8
D49429_1(D49429|pid:none) Mus musculus PW29 mRNA for pokeweed ag... 37 4.8
BC043032_1(BC043032|pid:none) Mus musculus RAD21 homolog (S. pom... 37 4.8
AK139492_1(AK139492|pid:none) Mus musculus 2 cells egg cDNA, RIK... 37 4.8
(Q61550) RecName: Full=Double-strand-break repair protein rad21 ... 37 4.8
EF212155_1(EF212155|pid:none) Homo sapiens cellular titin isofor... 37 4.8
AK129050_1(AK129050|pid:none) Mus musculus mRNA for mKIAA0078 pr... 37 4.8
CP001510_1399(CP001510|pid:none) Methylobacterium extorquens AM1... 36 6.3
CR859229_1(CR859229|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 36 6.3
CU633438_69(CU633438|pid:none) Podospora anserina genomic DNA ch... 36 6.3
CP000908_1586(CP000908|pid:none) Methylobacterium extorquens PA1... 36 6.3
CR860827_1(CR860827|pid:none) Pongo abelii mRNA; cDNA DKFZp469D1... 36 6.3
(A2ASS6) RecName: Full=Titin; EC=2.7.11.1; AltName: Ful... 36 6.3
CP000867_589(CP000867|pid:none) Methanococcus maripaludis C6, co... 36 8.2
EF212154_1(EF212154|pid:none) Homo sapiens cellular titin isofor... 36 8.2
AP011115_547(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl... 36 8.2
AM269972_6(AM269972|pid:none) Aspergillus niger contig An01c0250... 36 8.2
FM992691_411(FM992691|pid:none) Candida dubliniensis CD36 chromo... 36 8.2
AJ890364_207(AJ890364|pid:none) Emiliania huxleyi virus 86 isola... 36 8.2

>AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromosome 2
map 1418423-1684967 strain AX4, complete sequence.
Length = 934

Score = 151 bits (381), Expect(2) = 3e-61
Identities = 74/144 (51%), Positives = 96/144 (66%), Gaps = 1/144 (0%)
Frame = +3

Query: 831 INPNNVNATPIMIFQ-DNSSIKAIDYKNSNEYSTHTYSFDIPKSCGRNEITILIGDQLTR 1007
INP N N+TPI+ Q DNS I ID KNS ++S HTYSF IPK CGRN I IG+
Sbjct: 466 INPLNYNSTPIITLQSDNSKITGIDLKNSTDFSKHTYSFTIPKGCGRNGFLISIGNDTIH 525

Query: 1008 TEIYYELPIISSCSIVSNQMIECLGNFLNYLDLFKNGKIKIQFSNMVXXXXXXXXXXXFM 1187
+E Y LPI+++CSI +NQMIEC+G + +++DL+K+GKIKI FSN + F
Sbjct: 526 SEFNYNLPIVNNCSIGNNQMIECVGQYQDFIDLYKSGKIKIIFSNSIIVDNVANISIKFT 585

Query: 1188 SDSFSFPMKPEYSSSDIYLIVCDE 1259
+ SFP+KPEY SS+ L VC+E
Sbjct: 586 NSLISFPLKPEYGSSEFKLEVCNE 609

Score = 110 bits (275), Expect(2) = 3e-61
Identities = 60/148 (40%), Positives = 83/148 (56%)
Frame = +1

Query: 1276 KVDITPSLKFVSQSLVFNSXXXXXXXXXXXXXXXXXYNTSVYCFSNKQVYNCSFINNTSI 1455
KVDI+PS+ + + +FNS N+ ++C +N YNC+FIN ++I
Sbjct: 615 KVDISPSVDYFQTNPIFNSTGGSILIIGKNFVKETIENSHLHCVTNNLDYNCTFINFSTI 674

Query: 1456 SCDIELLGPFDQLCKIKFNSKDENNNISISYYPPLVLNXXXXXXXXXXXXXXXFGNEFYN 1635
SC + + GP DQ ++ FN+K E NISI +YPPLVLN GNEFY
Sbjct: 675 SCQMNINGPNDQYLEVVFNNKHE--NISIKFYPPLVLNTTISKSTGLVIIT---GNEFYK 729

Query: 1636 QIDSITVGKSKCLNSTFINSTSISCFVE 1719
QID I++G C N +FINS+ I+C VE
Sbjct: 730 QIDYISIGYYNCSNISFINSSCITCLVE 757

Score = 182 bits (462), Expect = 5e-44
Identities = 103/248 (41%), Positives = 149/248 (60%), Gaps = 11/248 (4%)
Frame = +3

Query: 198 MKYIILFFILYLVSDTLG---SLNEPVVKNFTCTKQSLEYTYDIDSTYYSKWIFSNLKYE 368
MK +I F IL + +G L+ ++K TK S+ Y +D +S Y+SKW F+++ +
Sbjct: 1 MKNLIFFNILISIF-IIGINCQLDPIIIKGSNFTKDSITYIFDKNSNYFSKWEFTDV--D 57

Query: 369 LVFECKNNSKERTCTAGMSIDIAKNLHGQIKMCRTDNNGVLDCHSN-YEEYFPKPIIEGD 545
L F C NN+ RTC ++ I K GQI C T NG +C+S +++Y+P+PII+G+
Sbjct: 58 LPFSCTNNTVIRTCVGSVNETIVKKFKGQILNCITSTNGASECNSFLWKDYYPQPIIDGE 117

Query: 546 FKPSTKGGPTIMKGYYLAVGVIPYFTIIPDTILGTIGDIFSNSIDVTNLILDYKGGCGPR 725
FKP TKGG ++GYYL G+ FTI+P T + IGD+ S++ID+TNL LDYKGGCGPR
Sbjct: 118 FKPPTKGGYVNIQGYYLVFGITK-FTILPSTKVPIIGDLESSTIDITNLTLDYKGGCGPR 176

Query: 726 TIQWPNDFKYSFNHSNPIIEN-------ILIEGSSFISXXXXINPNNVNATPIMIFQDNS 884
T WPN+F Y+FNH P I + I+ GS+F + + + I I D S
Sbjct: 177 TFTWPNNFNYTFNHQKPNISSVSSSDTKIIANGSNFCNIIDYV---TIFIEGIKI--DKS 231

Query: 885 SIKAIDYK 908
+I ID++
Sbjct: 232 NITLIDHE 239

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,347,034,869
Number of extensions: 64599066
Number of successful extensions: 184009
Number of sequences better than 10.0: 74
Number of HSP's gapped: 181407
Number of HSP's successfully gapped: 131
Length of query: 876
Length of database: 1,051,180,864
Length adjustment: 138
Effective length of query: 738
Effective length of database: 604,535,722
Effective search space: 446147362836
Effective search space used: 446147362836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.63 gvh: 0.68 alm: 0.28 top: 0.20 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.24 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: nuclear
16.0 %: endoplasmic reticulum
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U15681-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 39
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 4
SF (FL, S) 0
CH (FL, L) 4
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0