NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15662-1
Contig ID Contig-U15662-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15662-1 (Contig-U15662-1Q) /CSM_Contig/Contig-U15662-1Q.Seq.d
ATTTTATTTTAAAAATAATAAACTAAAAAACTGGATAAAATACAACACTT
GTTCAAGAGGAAGAACAAGCATAGAAAACCATCTCTAGATATTTCTTCCT
CAAACCAGTTAACTCAAGCAAACTCTATTAATAATAATAATACTAATAAT
AATATAAATAATAATACCAATAATAATAATAATATAAATAATAATAATAT
AAATAATATTAACAACAACAACAACAACAACAACAATAATAATAATAATA
ATAATAATAATATAAATATTTCCAAAAGTATTGATAGTGATAGTAGTGGT
AGTAGTAGTATTGGGTTATCATCAAGTCAACAAACAAATAGATCATCAGA
CAATAATAACGATAAGAAATTAGTTAGAAATTTATCACACTCTTCAATTT
TAATTAAAACTATGGATTCATCAATAATTTCGACATCAACGACATCAAAT
CAACAACAACAACAATCTCAACAAAAGAGTGAAAAAGATATTTCAAGAGA
ACTCTTATCAGAAATTCAACATCTTGAAAGATTACTTCAAGATTTAATCA
CTCAAAGAAGCAATAAAACTCGTAGAAAGGTTGTATCAACTGATGAAGGT
GAATTTACACGTGAAGGTGAAAAAGATACAAACGATGCAGAATGGATGAG
AGAAGAAGAACTTTTGAAAACAATTATCGTTGGTAAAAAGGCAGAATTTA
GAACTAAATTTGACAAAGGTAAAATCAATCAAAAAGAACCAGCTTTCTTA
AAATCTGGTGCTGTATTATCAATATTTCCTGGTATTACAGAAGATTTATA
TTGTTCACCATTACCATTGATTCATATTGATATCAATTGTAGTAATAGTA
ATTGTAATTGTAGTAATAATAATAGTAATAGTATTAATAGTCAAAATTGT
GAAAATAGTCAACAGCAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAAAGTATTACATTACCATCAACATTAGCATCAGTTAATGAAT
TATTAGAGGAAGCAATTCAACAAAATTATGAAGTGATTGAATCATGGATT
AGTAGTAATCAACAACATTTTTCAAATGTTTATGATACATTGGTTTATAT
TTATTTAGATCTTGATAATTTTAGAGTTAGTTCAGTTTATAGAAGTCATC
CAACTTATAAAACTTCAAAAAAAGAATCAATGTGGTTTCACTTGTATTTT
TTCTGGTATTGGAAAATATACTAAATTAACCCAATCAACTTTTTATTCTT
CAAATAATGGTATAACTTTTTATAATAATCCAAATGTTTCAAATTTTATG
TTGCCAAATAATAATATACAATCTACTAATAATAATATTAATATTAATAG
TAATAATAATATAACAAATCAAACTCAATC----------ATGAAAATGA
AAATGAAAATGAAAATATTGAAGAAAAATGTATACTTTCAACAATTGTTG
GACCAAAACCAGATTTAGTTGAAGATATGGTAGTTTATAAAGATTTGATT
TGCGGAAAATCTGGATCATCATATCCAAAACATTTCACTGGTAGAAGAAT
TGGTGACCCAATTTGTGATAGATTTAAGGTTGTAGTGTATAAAGAGAAAT
TATTAGTTACTTTAGCAGATGGATGTAATTGGGGTAGATTACCATATGAA
GCGGCAACTAATGCAACCAATGGATTTATATCATTTTTAATGGAGAATCA
TTTAGAGGTTAATACTGTTAGAAAAGCGGGTAGTTTTTTATTGGCAGCAA
TGACAGCGGCACACAAATCAATTATCGCAGGGAAATCCGAAGTATTTGAA
AGTGGAACCACTACATTGATTGGTGGTATACTGGCAAAGATTAAACCAGA
GAGTGAAAATATAAAGAGAATGTCCAATATTCATAATCATGCTGTGGGTG
GAATTGAAGATCATCAATCCTCTTCGAGTTGGGTGTTTGTTGGTGTGACA
TTGGGTGATTGTAAAGCATTTCACTACAGTAAAAAAGATCACACCTTTAG
TGATATAACCAAAGGTAATCGTCAAAATGTATCGGATGCACGTGATCCAG
GTGGTAGGTTAGGTCCATACATTAGACAAGGTGAACCCGATCTTAGAAAT
CTTCAAGTGTTTTATAAACTTTGTGACCCTGAAGATTTGATCCTCTTATT
GAGTGATGGTGTTCATGATAATTTGGATCCTCAACAATTGGGTATTAAAC
CAAATGAATTGGGTATCGATGAAGAATCATGGGATAAAGCTGCCATAAGT
TTCCCAATTGATTCTGAAAACGCAAAAAATGAATACAGAAAGAGATGGTT
GAATCAACATTTTTGCTCTGATCAAAATACTCTCAATCAATTGGAACCAA
CATTTATCTCAAATACTCTATTAAAACATTGTTTAGATACAACTCAATCA
AGTAGAGATTTTATGGAAACAAATACAAGTAAAAAATTACCTTCCGATTA
TAGTTTATATCCTGGTAAAATGGATCATAATACTTGTTTATGTTTTAAAG
TTGGTAATTTTAATTAAAAAAAAAAAAACAAAATAGAATAATTTATAAAA
AAAAAAAAAAAGAAAAAGAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAA
AAAAAAAAAAAGATTTATAAAAATAATAAAATAAAACTATATTTAACAA
Gap gap included
Contig length 2639
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 10
Number of EST 12
Link to clone list U15662
List of clone(s) 

est1=CHJ685F,1,597
est2=SLE665F,32,156
est3=SLF665F,32,238
est4=AFN845F,440,1075
est5=CHM147F,795,1380
est6=CFJ794F,1381,1970
est7=AFN845Z,1722,2491
est8=CHJ685Z,1995,2447
est9=SSI601E,1997,2536
est10=SLA729Z,2006,2536
est11=SSB528E,2208,2639
est12=SLC619Z,2312,2637
Translated Amino Acid sequence 
fyfknnklknwikyntcsrgrtsienhl*iflpqts*lkqtlliiiiliii*iiipiiii
i*iiii*iilttttttttiiiiiiiii*ifpkvlivivvvvvvlgyhqvnkqidhqtiit
irn*leiyhtlqf*lklwihq*frhqrhqinnnnnlnkrvkkifqensyqkfnilkdyfk
i*slkeaiklverlyqlmkvnlhvkvkkiqtmqng*ekknf*kqlslvkrqnlelnltkv
ksikknqls*nlvlyyqyflvlqkiyivhhyh*filisivvivivivviiivivlivkiv
kivnsnnnnnnnnnnnnnnkvlhyhqh*hqlmny*rkqfnkimk*lnhglvvinnifqmf
mihwfifi*ILIILELVQFIEVIQLIKLQKKNQCGFTCIFSGIGKYTKLTQSTFYSSNNG
ITFYNNPNVSNFMLPNNNIQSTNNNININSNNNITNQTQ---

---ENENENENIEEKCILSTIVGPKPDLVEDMVVYKDLICGKSGSSYPKHFTGRRIGDPI
CDRFKVVVYKEKLLVTLADGCNWGRLPYEAATNATNGFISFLMENHLEVNTVRKAGSFLL
AAMTAAHKSIIAGKSEVFESGTTTLIGGILAKIKPESENIKRMSNIHNHAVGGIEDHQSS
SSWVFVGVTLGDCKAFHYSKKDHTFSDITKGNRQNVSDARDPGGRLGPYIRQGEPDLRNL
QVFYKLCDPEDLILLLSDGVHDNLDPQQLGIKPNELGIDEESWDKAAISFPIDSENAKNE
YRKRWLNQHFCSDQNTLNQLEPTFISNTLLKHCLDTTQSSRDFMETNTSKKLPSDYSLYP
GKMDHNTCLCFKVGNFN*kkknkie*fikkkkkkkkkkkkrkkkkkkkkrfikiik*nyi
*q
Translated Amino Acid sequence (All Frames) 
Frame A:
ilf*k**tkkldkiqhlfkrknkhrkpsldisssnqltqansinnnntnnninnntnnnn
ninnnninninnnnnnnnnnnnnnnnninisksidsdssgsssiglsssqqtnrssdnnn
dkklvrnlshssiliktmdssiiststtsnqqqqqsqqksekdisrellseiqhlerllq
dlitqrsnktrrkvvstdegeftregekdtndaewmreeellktiivgkkaefrtkfdkg
kinqkepaflksgavlsifpgitedlycsplplihidincsnsncncsnnnsnsinsqnc
ensqqqqqqqqqqqqqqqqqsitlpstlasvnelleeaiqqnyevieswissnqqhfsnv
ydtlvyiyldldnfrvssvyrshptyktskkesmwfhlyffwywkiy*inpinflffk*w
ynfl**skcfkfyvak**ytiy***y*y*****ynksnsi---

---mkmkmkmkilkknvyfqqlldqnqi*lkiw*fiki*faenldhhiqnislveelvtq
fvidlrl*cikrny*ll*qmdvigvdyhmkrqlmqpmdlyhf*wrii*rlillekrvvfy
wqq*qrhtnqlsqgnpkylkveplh*lvvywqrlnqrvki*recpifiimlwvelkiinp
lrvgcllv*hwvivkhfttvkkitplvi*pkvivkmyrmhviqvvg*vhtldkvnpilei
fkcfinfvtlki*ssy*vmvfmiiwilnnwvlnqmnwvsmknhgiklp*vsqlilktqkm
nterdg*inifalikilsinwnqhlsqily*niv*iqlnqveilwkqiqvknylpiivyi
lvkwiiilvyvlklvilikkkktk*nnl*kkkkrkrkkkkkekrkkkkkkdl*k**nkti
fn

Frame B:
fyfknnklknwikyntcsrgrtsienhl*iflpqts*lkqtlliiiiliii*iiipiiii
i*iiii*iilttttttttiiiiiiiii*ifpkvlivivvvvvvlgyhqvnkqidhqtiit
irn*leiyhtlqf*lklwihq*frhqrhqinnnnnlnkrvkkifqensyqkfnilkdyfk
i*slkeaiklverlyqlmkvnlhvkvkkiqtmqng*ekknf*kqlslvkrqnlelnltkv
ksikknqls*nlvlyyqyflvlqkiyivhhyh*filisivvivivivviiivivlivkiv
kivnsnnnnnnnnnnnnnnkvlhyhqh*hqlmny*rkqfnkimk*lnhglvvinnifqmf
mihwfifi*ILIILELVQFIEVIQLIKLQKKNQCGFTCIFSGIGKYTKLTQSTFYSSNNG
ITFYNNPNVSNFMLPNNNIQSTNNNININSNNNITNQTQ---

---*k*k*k*ky*rkmytfnncwtktrfs*rygsl*rfdlrkiwiiisktfhw*knw*pn
l**i*gcsv*reiisyfsrwm*lg*iti*sgn*cnqwiyiifngesfrg*yc*ksg*ffi
gsndsgtqinyrreirsi*kwnhyidwwytgkd*tre*kykenvqys*sccgwn*rssil
felgvcwcdig*l*sislq*krshl**ynqr*sskcigct*srw*vrsih*tr*trs*ks
ssvl*tl*p*rfdplie*wcs**fgsstigy*tk*igyr*rimg*schkfpn*f*krkk*
iqkemvestfll*skysqsigtniylkysiktlfrynsik*rfygnkyk*kitfrl*fis
w*ngs*ylfmf*sw*f*lkkkkqnriiykkkkkekekkkkkkkekkkkkkiyknnkikly
lt

Frame C:
filkiin*ktg*nttlvqeeeqa*ktisryfflkpvnsskly****y***yk**yq****
yk***yk*y*qqqqqqqq********ykyfqky*****w***ywviikstnk*iirq**r
*eis*kfitlfnfn*nygfinnfdindiksttttistke*kryfkrtlirnsts*kitsr
fnhskkq*ns*kgcin**r*iyt*r*krykrcrmderrrtfennyrw*kgri*n*i*qr*
nqskrtsflkiwcciiniswyyrrfilftitidsy*yql****l*l*******y**skl*
k*stattttttttttttttkyyitinisis**iirgsnstkl*sd*imd***sttffkcl
*yiglylfrs**f*s*fsl*kssnl*nfkkrinvvslvfflvleniln*pnqlfilqimv
*lfiiiqmfqilccqiiiynlliiililiviii*qikln---

---ENENENENIEEKCILSTIVGPKPDLVEDMVVYKDLICGKSGSSYPKHFTGRRIGDPI
CDRFKVVVYKEKLLVTLADGCNWGRLPYEAATNATNGFISFLMENHLEVNTVRKAGSFLL
AAMTAAHKSIIAGKSEVFESGTTTLIGGILAKIKPESENIKRMSNIHNHAVGGIEDHQSS
SSWVFVGVTLGDCKAFHYSKKDHTFSDITKGNRQNVSDARDPGGRLGPYIRQGEPDLRNL
QVFYKLCDPEDLILLLSDGVHDNLDPQQLGIKPNELGIDEESWDKAAISFPIDSENAKNE
YRKRWLNQHFCSDQNTLNQLEPTFISNTLLKHCLDTTQSSRDFMETNTSKKLPSDYSLYP
GKMDHNTCLCFKVGNFN*kkknkie*fikkkkkkkkkkkkrkkkkkkkkrfikiik*nyi
*q
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15662-1 (Contig-U15662-1Q)
/CSM_Contig/Contig-U15662-1Q.Seq.d
         (2649 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15662-1 (Contig-U15662-1Q) /CSM_Contig/Conti...  2151  0.0
Contig-U15628-1 (Contig-U15628-1Q) /CSM_Contig/Conti...    52  5e-06
Contig-U15062-1 (Contig-U15062-1Q) /CSM_Contig/Conti...    48  7e-05
Contig-U11923-1 (Contig-U11923-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U11687-1 (Contig-U11687-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U16379-1 (Contig-U16379-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U15934-1 (Contig-U15934-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U15684-1 (Contig-U15684-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U11270-1 (Contig-U11270-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U11126-1 (Contig-U11126-1Q) /CSM_Contig/Conti...    44  0.001

>Contig-U15662-1 (Contig-U15662-1Q) /CSM_Contig/Contig-U15662-1Q.Seq.d
          Length = 2649

 Score = 2151 bits (1085), Expect = 0.0
 Identities = 1085/1085 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1431 tatactttcaacaattgttggaccaaaaccagatttagttgaagatatggtagtttataa 1490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 tatactttcaacaattgttggaccaaaaccagatttagttgaagatatggtagtttataa 1490

                                                                        
Query: 1491 agatttgatttgcggaaaatctggatcatcatatccaaaacatttcactggtagaagaat 1550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 agatttgatttgcggaaaatctggatcatcatatccaaaacatttcactggtagaagaat 1550

                                                                        
Query: 1551 tggtgacccaatttgtgatagatttaaggttgtagtgtataaagagaaattattagttac 1610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 tggtgacccaatttgtgatagatttaaggttgtagtgtataaagagaaattattagttac 1610

                                                                        
Query: 1611 tttagcagatggatgtaattggggtagattaccatatgaagcggcaactaatgcaaccaa 1670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 tttagcagatggatgtaattggggtagattaccatatgaagcggcaactaatgcaaccaa 1670

                                                                        
Query: 1671 tggatttatatcatttttaatggagaatcatttagaggttaatactgttagaaaagcggg 1730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 tggatttatatcatttttaatggagaatcatttagaggttaatactgttagaaaagcggg 1730

                                                                        
Query: 1731 tagttttttattggcagcaatgacagcggcacacaaatcaattatcgcagggaaatccga 1790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 tagttttttattggcagcaatgacagcggcacacaaatcaattatcgcagggaaatccga 1790

                                                                        
Query: 1791 agtatttgaaagtggaaccactacattgattggtggtatactggcaaagattaaaccaga 1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1791 agtatttgaaagtggaaccactacattgattggtggtatactggcaaagattaaaccaga 1850

                                                                        
Query: 1851 gagtgaaaatataaagagaatgtccaatattcataatcatgctgtgggtggaattgaaga 1910
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1851 gagtgaaaatataaagagaatgtccaatattcataatcatgctgtgggtggaattgaaga 1910

                                                                        
Query: 1911 tcatcaatcctcttcgagttgggtgtttgttggtgtgacattgggtgattgtaaagcatt 1970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1911 tcatcaatcctcttcgagttgggtgtttgttggtgtgacattgggtgattgtaaagcatt 1970

                                                                        
Query: 1971 tcactacagtaaaaaagatcacacctttagtgatataaccaaaggtaatcgtcaaaatgt 2030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1971 tcactacagtaaaaaagatcacacctttagtgatataaccaaaggtaatcgtcaaaatgt 2030

                                                                        
Query: 2031 atcggatgcacgtgatccaggtggtaggttaggtccatacattagacaaggtgaacccga 2090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2031 atcggatgcacgtgatccaggtggtaggttaggtccatacattagacaaggtgaacccga 2090

                                                                        
Query: 2091 tcttagaaatcttcaagtgttttataaactttgtgaccctgaagatttgatcctcttatt 2150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2091 tcttagaaatcttcaagtgttttataaactttgtgaccctgaagatttgatcctcttatt 2150

                                                                        
Query: 2151 gagtgatggtgttcatgataatttggatcctcaacaattgggtattaaaccaaatgaatt 2210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 gagtgatggtgttcatgataatttggatcctcaacaattgggtattaaaccaaatgaatt 2210

                                                                        
Query: 2211 gggtatcgatgaagaatcatgggataaagctgccataagtttcccaattgattctgaaaa 2270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2211 gggtatcgatgaagaatcatgggataaagctgccataagtttcccaattgattctgaaaa 2270

                                                                        
Query: 2271 cgcaaaaaatgaatacagaaagagatggttgaatcaacatttttgctctgatcaaaatac 2330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2271 cgcaaaaaatgaatacagaaagagatggttgaatcaacatttttgctctgatcaaaatac 2330

                                                                        
Query: 2331 tctcaatcaattggaaccaacatttatctcaaatactctattaaaacattgtttagatac 2390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2331 tctcaatcaattggaaccaacatttatctcaaatactctattaaaacattgtttagatac 2390

                                                                        
Query: 2391 aactcaatcaagtagagattttatggaaacaaatacaagtaaaaaattaccttccgatta 2450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2391 aactcaatcaagtagagattttatggaaacaaatacaagtaaaaaattaccttccgatta 2450

                                                                        
Query: 2451 tagtttatatcctggtaaaatggatcataatacttgtttatgttttaaagttggtaattt 2510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2451 tagtttatatcctggtaaaatggatcataatacttgtttatgttttaaagttggtaattt 2510

                 
Query: 2511 taatt 2515
            |||||
Sbjct: 2511 taatt 2515


 Score =  712 bits (359), Expect = 0.0
 Identities = 359/359 (100%)
 Strand = Plus / Plus

                                                                       
Query: 475 aagagtgaaaaagatatttcaagagaactcttatcagaaattcaacatcttgaaagatta 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aagagtgaaaaagatatttcaagagaactcttatcagaaattcaacatcttgaaagatta 534

                                                                       
Query: 535 cttcaagatttaatcactcaaagaagcaataaaactcgtagaaaggttgtatcaactgat 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cttcaagatttaatcactcaaagaagcaataaaactcgtagaaaggttgtatcaactgat 594

                                                                       
Query: 595 gaaggtgaatttacacgtgaaggtgaaaaagatacaaacgatgcagaatggatgagagaa 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaaggtgaatttacacgtgaaggtgaaaaagatacaaacgatgcagaatggatgagagaa 654

                                                                       
Query: 655 gaagaacttttgaaaacaattatcgttggtaaaaaggcagaatttagaactaaatttgac 714
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaagaacttttgaaaacaattatcgttggtaaaaaggcagaatttagaactaaatttgac 714

                                                                       
Query: 715 aaaggtaaaatcaatcaaaaagaaccagctttcttaaaatctggtgctgtattatcaata 774
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aaaggtaaaatcaatcaaaaagaaccagctttcttaaaatctggtgctgtattatcaata 774

                                                                      
Query: 775 tttcctggtattacagaagatttatattgttcaccattaccattgattcatattgatat 833
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tttcctggtattacagaagatttatattgttcaccattaccattgattcatattgatat 833


 Score =  644 bits (325), Expect = 0.0
 Identities = 339/346 (97%)
 Strand = Plus / Plus

                                                                        
Query: 961  agtattacattaccatcaacattagcatcagttaatgaattattagaggaagcaattcaa 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  agtattacattaccatcaacattagcatcagttaatgaattattagaggaagcaattcaa 1020

                                                                        
Query: 1021 caaaattatgaagtgattgaatcatggattagtagtaatcaacaacatttttcaaatgtt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 caaaattatgaagtgattgaatcatggattagtagtaatcaacaacatttttcaaatgtt 1080

                                                                        
Query: 1081 tatgatacattggtttatatttatttagatcttgataattttagagttagttcagtttat 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tatgatacattggtttatatttatttagatcttgataattttagagttagttcagtttat 1140

                                                                        
Query: 1141 agaagtcatccaacttataaaacttcnnnnnnngaatcaatgtggtttcacttgtatttt 1200
            ||||||||||||||||||||||||||       |||||||||||||||||||||||||||
Sbjct: 1141 agaagtcatccaacttataaaacttcaaaaaaagaatcaatgtggtttcacttgtatttt 1200

                                                                        
Query: 1201 ttctggtattggaaaatatactaaattaacccaatcaactttttattcttcaaataatgg 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ttctggtattggaaaatatactaaattaacccaatcaactttttattcttcaaataatgg 1260

                                                          
Query: 1261 tataactttttataataatccaaatgtttcaaattttatgttgcca 1306
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 tataactttttataataatccaaatgtttcaaattttatgttgcca 1306


 Score =  325 bits (164), Expect = 2e-88
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                       
Query: 269 tttccaaaagtattgatagtgatagtagtggtagtagtagtattgggttatcatcaagtc 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttccaaaagtattgatagtgatagtagtggtagtagtagtattgggttatcatcaagtc 328

                                                                       
Query: 329 aacaaacaaatagatcatcagacaataataacgataagaaattagttagaaatttatcac 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacaaacaaatagatcatcagacaataataacgataagaaattagttagaaatttatcac 388

                                                       
Query: 389 actcttcaattttaattaaaactatggattcatcaataatttcg 432
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 actcttcaattttaattaaaactatggattcatcaataatttcg 432


 Score =  170 bits (86), Expect = 7e-42
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                       
Query: 43  caacacttgttcaagaggaagaacaagcatagaaaaccatctctagatatttcttcctca 102
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  caacacttgttcaagaggaagaacaagcatagaaaaccatctctagatatttcttcctca 102

                                     
Query: 103 aaccagttaactcaagcaaactctat 128
           ||||||||||||||||||||||||||
Sbjct: 103 aaccagttaactcaagcaaactctat 128


 Score = 36.2 bits (18), Expect = 0.27
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 892 caaaattgtgaaaatagt 909
           ||||||||||||||||||
Sbjct: 892 caaaattgtgaaaatagt 909


 Score = 32.2 bits (16), Expect = 4.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1365 caaatcaaactcaatc 1380
            ||||||||||||||||
Sbjct: 1365 caaatcaaactcaatc 1380


>Contig-U15628-1 (Contig-U15628-1Q) /CSM_Contig/Contig-U15628-1Q.Seq.d
          Length = 1898

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                      
Query: 2155 gatggtgttcatgataatttggatcc 2180
            ||||||||||||||||||||||||||
Sbjct: 1390 gatggtgttcatgataatttggatcc 1415


 Score = 38.2 bits (19), Expect = 0.068
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 2457 atatcctggtaaaatggatcata 2479
            |||||| ||||||||||||||||
Sbjct: 1677 atatccaggtaaaatggatcata 1699


 Score = 36.2 bits (18), Expect = 0.27
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 1615 gcagatggatgtaattggggta 1636
            |||||||| |||||||||||||
Sbjct: 790  gcagatggctgtaattggggta 811


>Contig-U15062-1 (Contig-U15062-1Q) /CSM_Contig/Contig-U15062-1Q.Seq.d
          Length = 1282

 Score = 48.1 bits (24), Expect = 7e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 282 tgatagtgatagtagtggtagtagtagt 309
           ||||||||||||||||| ||||||||||
Sbjct: 529 tgatagtgatagtagtgatagtagtagt 556


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,800
Number of Sequences: 8402
Number of extensions: 37800
Number of successful extensions: 4409
Number of sequences better than 10.0: 257
length of query: 2649
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2632
effective length of database: 7,932,708
effective search space: 20878887456
effective search space used: 20878887456
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2. 5
Homology vs DNA 
Query= Contig-U15662-1 (Contig-U15662-1Q) /CSM_Contig/Contig-U15662-1Q.Seq.d
         (2649 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ345656) Dictyostelium discoideum cDNA clone:dda28j12, 3' ...  1433   0.0    3
(BJ362231) Dictyostelium discoideum cDNA clone:ddc20l23, 5' ...  1090   0.0    1
(C90271) Dictyostelium discoideum slug cDNA, clone SSI601.       1009   0.0    1
(AU033405) Dictyostelium discoideum slug cDNA, clone SLA729.      991   0.0    1
(BJ381544) Dictyostelium discoideum cDNA clone:ddc41i22, 3' ...   751   0.0    1
(BJ328488) Dictyostelium discoideum cDNA clone:dda28j12, 5' ...   714   0.0    1
(BJ367224) Dictyostelium discoideum cDNA clone:ddc41i22, 5' ...   325   0.0    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   408   0.0    2
(BJ368371) Dictyostelium discoideum cDNA clone:ddc46m11, 5' ...   408   0.0    2
(AU037144) Dictyostelium discoideum slug cDNA, clone SSB528.      561   e-155  1
(AU034610) Dictyostelium discoideum slug cDNA, clone SLC619.      361   9e-95  1
(AU061570) Dictyostelium discoideum slug cDNA, clone SLE665.      170   2e-37  1
(AU053354) Dictyostelium discoideum slug cDNA, clone SLI447.       52   3e-07  3
(U67836) Dictyostelium discoideum TipA (tipA) gene, complete...    46   1e-06  6
(AU034872) Dictyostelium discoideum slug cDNA, clone SLE624.       52   5e-06  4
(BJ377268) Dictyostelium discoideum cDNA clone:ddc23b03, 3' ...    52   2e-05  3
(AU261607) Dictyostelium discoideum vegetative cDNA clone:VS...    52   2e-05  2
(BJ344644) Dictyostelium discoideum cDNA clone:dda20c03, 3' ...    52   2e-04  3
(BJ427946) Dictyostelium discoideum cDNA clone:ddv10m01, 3' ...    52   2e-04  3
(AU034919) Dictyostelium discoideum slug cDNA, clone SLE690.       46   0.002  3
(C92916) Dictyostelium discoideum slug cDNA, clone SSF758.         46   0.002  3
(C92213) Dictyostelium discoideum slug cDNA, clone SSD241.         44   0.003  2
(EG851128) EST_ssal_eve_8408 ssaleve thyroid Salmo salar cDN...    56   0.007  1
(BJ340383) Dictyostelium discoideum cDNA clone:dda12i21, 3' ...    52   0.011  2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    54   0.023  8
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    46   0.027  12
(EF426731) Iris missouriensis clone 14 retrotransposon IRRE,...    54   0.028  1
(AC132351) Mus musculus BAC clone RP24-95F24 from chromosome...    52   0.11   1
(AC105968) Mus musculus chromosome 18, clone RP23-265P4, com...    52   0.11   1
(AC127630) Rattus norvegicus clone CH230-421F8, WORKING DRAF...    50   0.43   1
(AC094363) Rattus norvegicus clone CH230-3F8, *** SEQUENCING...    50   0.43   1
(EG413404) SAAH-aab10b01.b1 Agen 0058 Schmidtea mediterranea...    50   0.43   1
(AM925951) Carassius auratus EST, clone cdn15P0002H13, 5'-en...    50   0.43   1
(AF079445) Dictyostelium discoideum TipC (tipC) gene, comple...    46   0.53   4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    48   1.7    1
(AP003789) Homo sapiens genomic DNA, chromosome 8q23, clone:...    48   1.7    1
(AL512447) Human DNA sequence from clone RP11-77B15 on chrom...    48   1.7    1
(AC116917) Homo sapiens chromosome 5 clone RP11-756G12, comp...    48   1.7    1
(AC099337) Homo sapiens chromosome 1 clone RP11-365M20, comp...    48   1.7    1
(AC011339) Homo sapiens chromosome 5 clone CTC-260J12, compl...    48   1.7    1
(AC010291) Homo sapiens chromosome 5 clone CTB-130E24, compl...    48   1.7    1
(AC125914) Rattus norvegicus clone CH230-168I4, *** SEQUENCI...    48   1.7    1
(CU972451) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.7    1
(CU459186) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.7    1
(AC230874) Bos taurus clone CH240-496M12, WORKING DRAFT SEQU...    48   1.7    1
(AC172422) Strongylocentrotus purpuratus clone R3-14H23, WOR...    48   1.7    1
(AC024505) Homo sapiens chromosome 1 clone RP11-152L7 map 1,...    48   1.7    1
(AC021784) Homo sapiens clone RP11-20P9, 3 unordered pieces.       48   1.7    1
(AC011688) Homo sapiens clone RP11-15I8, WORKING DRAFT SEQUE...    48   1.7    1
(AQ855080) CpG1955A CpIOWAgDNA1 Cryptosporidium parvum genom...    48   1.7    1
(EK272419) 1095462263351 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.7    1
(EJ815948) 1093017515407 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.7    1
(EJ811178) 1093017491023 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.7    1
(CU021322) Equus caballus GSS, BAC clone CH241-98G4, SP6 end...    48   1.7    1
(EB645734) AGENCOURT_75512211 NICHD_XGC_thy Xenopus laevis c...    48   1.7    1
(AU286994) Zinnia elegans cDNA, clone:Z1580, primer:M13 forw...    48   1.7    1
(BQ090274) rc63f02.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    48   1.7    1
(BJ398223) Dictyostelium discoideum cDNA clone:dds11d18, 3' ...    48   1.7    1
(BJ386949) Dictyostelium discoideum cDNA clone:dds11d18, 5' ...    48   1.7    1
(BJ376779) Dictyostelium discoideum cDNA clone:ddc29l19, 3' ...    48   1.7    1
(BJ375110) Dictyostelium discoideum cDNA clone:ddc17a16, 3' ...    48   1.7    1
(BJ364086) Dictyostelium discoideum cDNA clone:ddc29l19, 5' ...    48   1.7    1
(BJ361507) Dictyostelium discoideum cDNA clone:ddc17a16, 5' ...    48   1.7    1
(FE763620) CCAG1593.b3 CCAG Petrolisthes cinctipes heart, gi...    48   1.7    1
(EY337725) CAWY8525.fwd CAWY Helobdella robusta Subtracted E...    48   1.7    1
(AY865171) Lactuca sativa chloroplast inversion region.            42   1.9    2
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple...    44   2.1    4
(BJ383494) Dictyostelium discoideum cDNA clone:ddc53a11, 3' ...    46   2.7    2
(BJ348908) Dictyostelium discoideum cDNA clone:dda34b23, 3' ...    46   3.0    2
(AC111677) Rattus norvegicus clone CH230-46L15, *** SEQUENCI...    36   3.3    2
(BJ385481) Dictyostelium discoideum cDNA clone:ddc55i03, 3' ...    46   3.3    2
(BJ407983) Dictyostelium discoideum cDNA clone:dds44e08, 3' ...    46   3.4    2
(BJ408643) Dictyostelium discoideum cDNA clone:dds46b13, 3' ...    46   3.4    2
(AC181094) Strongylocentrotus purpuratus clone R3-3045C16, W...    40   4.9    5
(AC106984) Rattus norvegicus clone CH230-233I23, *** SEQUENC...    38   5.6    9
(BX957309) Zebrafish DNA sequence from clone CH211-113P19 in...    46   6.8    1
(BX908755) Zebrafish DNA sequence from clone DKEY-67F11 in l...    46   6.8    1
(AC189030) Taeniopygia guttata chromosome UNK clone TGMCBa-1...    46   6.8    1
(BX470109) Mouse DNA sequence from clone RP23-59I3 on chromo...    46   6.8    1
(AL662802) Mouse DNA sequence from clone RP23-34N10 on chrom...    46   6.8    1
(AC122263) Mus musculus BAC clone RP23-190O11 from 15, compl...    46   6.8    1
(AC098745) Mus musculus BAC clone RP23-122P16 from 18, compl...    46   6.8    1
(AC226795) Pan troglodytes chromosome X clone CH251-195F4 ma...    46   6.8    1
(AC192291) Pan troglodytes BAC clone CH251-276C11 from chrom...    46   6.8    1
(DD147297) A method for examining secondary hyperparathyroid...    46   6.8    1
(CQ343439) Sequence 17533 from Patent WO0157275.                   46   6.8    1
(CQ330708) Sequence 4802 from Patent WO0157275.                    46   6.8    1
(CQ306317) Sequence 17422 from Patent WO0186003.                   46   6.8    1
(CQ293806) Sequence 4911 from Patent WO0186003.                    46   6.8    1
(CQ269292) Sequence 17553 from Patent WO0157277.                   46   6.8    1
(CQ256718) Sequence 4979 from Patent WO0157277.                    46   6.8    1
(CQ231122) Sequence 17961 from Patent WO0157273.                   46   6.8    1
(CQ218124) Sequence 4963 from Patent WO0157273.                    46   6.8    1
(CQ207658) Sequence 9935 from Patent WO0157271.                    46   6.8    1
(CQ202546) Sequence 4823 from Patent WO0157271.                    46   6.8    1
(CQ183234) Sequence 14630 from Patent WO0157274.                   46   6.8    1
(CQ173349) Sequence 4745 from Patent WO0157274.                    46   6.8    1
(CQ147885) Sequence 17907 from Patent WO0157276.                   46   6.8    1
(CQ134868) Sequence 4890 from Patent WO0157276.                    46   6.8    1
(CQ109248) Sequence 18107 from Patent WO0157272.                   46   6.8    1
(CQ096119) Sequence 4978 from Patent WO0157272.                    46   6.8    1
(CQ078258) Sequence 14058 from Patent WO0157278.                   46   6.8    1
(CQ069070) Sequence 4870 from Patent WO0157278.                    46   6.8    1
(CQ058870) Sequence 9690 from Patent WO0157270.                    46   6.8    1
(CQ053885) Sequence 4705 from Patent WO0157270.                    46   6.8    1
(AR557634) Sequence 12765 from patent US 6747137.                  46   6.8    1
(CR956419) Pig DNA sequence from clone CH242-148M18 on chrom...    46   6.8    1
(EU408361) Drosophila hydei clone B10 microsatellite sequence.     46   6.8    1
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    46   6.8    1
(AL928717) Human DNA sequence from clone RP11-363G10 on chro...    46   6.8    1
(AL133166) Human chromosome 14 DNA sequence BAC C-2010O1 of ...    46   6.8    1
(AC231759) Homo sapiens BAC clone RP11-651H2 from chromosome...    46   6.8    1
(AC231532) Homo sapiens BAC clone RP11-319K11 from chromosom...    46   6.8    1
(AC092040) Homo sapiens chromosome 3 clone RP11-129B22, comp...    46   6.8    1
(AC011155) Homo sapiens chromosome 18, clone RP11-7K9, compl...    46   6.8    1
(AC005414) Homo sapiens 12p13.3 PAC RPCI4-696F19 (Roswell Pa...    46   6.8    1
(AC146998) Arbacia punctulata clone BAP-10E23, WORKING DRAFT...    46   6.8    1
(AC130860) Rattus norvegicus clone CH230-165J9, WORKING DRAF...    46   6.8    1
(AC129743) Rattus norvegicus clone CH230-31G7, WORKING DRAFT...    46   6.8    1
(AC118548) Homo sapiens chromosome 3 clone RP11-89O2, WORKIN...    46   6.8    1
(AC117354) Rattus norvegicus clone CH230-154L15, *** SEQUENC...    46   6.8    1
(AC098662) Rattus norvegicus clone CH230-118I1, *** SEQUENCI...    46   6.8    1
(AC097095) Rattus norvegicus clone CH230-208L9, WORKING DRAF...    46   6.8    1
(CU914429) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   6.8    1
(CU855808) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   6.8    1
(AC092419) Homo sapiens chromosome 3 clone RP11-380J21, WORK...    46   6.8    1
(AC090219) Homo sapiens chromosome 18 clone RP11-711G5 map 1...    46   6.8    1
(AC079314) Homo sapiens chromosome Xp clone RP11-386I20, WOR...    46   6.8    1
(AP001934) Homo sapiens genomic DNA, chromosome 18q21 clone:...    46   6.8    1
(AC225517) Medicago truncatula clone mth2-21k22, WORKING DRA...    46   6.8    1
(AC225507) Medicago truncatula clone mth2-161b5, WORKING DRA...    46   6.8    1
(AC220511) Bos taurus clone CH240-356A21, WORKING DRAFT SEQU...    46   6.8    1
(AC201321) Strongylocentrotus purpuratus clone R3-16L20, WOR...    46   6.8    1
(AC180611) Strongylocentrotus purpuratus clone R3-3090N1, WO...    46   6.8    1
(AC180404) Strongylocentrotus purpuratus clone R3-3111M16, W...    46   6.8    1
(AC180101) Strongylocentrotus purpuratus clone R3-4008A3, WO...    46   6.8    1
(AC179690) Strongylocentrotus purpuratus clone R3-1021L6, WO...    46   6.8    1
(AC179614) Strongylocentrotus purpuratus clone R3-1028K7, WO...    46   6.8    1
(AC179591) Strongylocentrotus purpuratus clone R3-1029G1, WO...    46   6.8    1
(AC179046) Strongylocentrotus purpuratus clone R3-4005E03, W...    46   6.8    1
(AC178677) Strongylocentrotus purpuratus clone R3-3007E13, W...    46   6.8    1
(AC178659) Strongylocentrotus purpuratus clone R3-3007I23, W...    46   6.8    1
(AC178306) Strongylocentrotus purpuratus clone R3-3101B10, W...    46   6.8    1
(AC178292) Strongylocentrotus purpuratus clone R3-3095E21, W...    46   6.8    1
(AC177329) Strongylocentrotus purpuratus clone R3-1032L7, WO...    46   6.8    1
(AC176337) Strongylocentrotus purpuratus clone R3-3053N1, WO...    46   6.8    1
(AC176106) Strongylocentrotus purpuratus clone R3-24G8, WORK...    46   6.8    1
(AC025402) Homo sapiens chromosome 6 clone RP11-300O3 map 6,...    46   6.8    1
(AC018656) Homo sapiens chromosome 3 clone RP11-152N21, WORK...    46   6.8    1
(AC015953) Homo sapiens chromosome 18 clone RP11-7M5 map 18,...    46   6.8    1
(AC007944) Homo sapiens chromosome 3 clone RP11-90P12 map 3,...    46   6.8    1
(BH116513) RPCI-24-271O23.TV RPCI-24 Mus musculus genomic cl...    46   6.8    1
(AZ790948) 2M0039K11R Mouse 10kb plasmid UUGC1M library Mus ...    46   6.8    1
(AZ349261) 1M0086M07F Mouse 10kb plasmid UUGC1M library Mus ...    46   6.8    1
(FI215330) CccaBa054-C19TR CccABa Cajanus cajan genomic clon...    46   6.8    1
(FI208250) CccaBa006-H3TV CccABa Cajanus cajan genomic clone...    46   6.8    1
(FH741443) CHO_OF5158xe17r1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   6.8    1
(ER625572) 1093017607055 Global-Ocean-Sampling_GS-36-01-01-2...    46   6.8    1
(EK398003) 1095469528153 Global-Ocean-Sampling_GS-31-01-01-1...    46   6.8    1
(EJ517410) 1092955106168 Global-Ocean-Sampling_GS-29-01-01-1...    46   6.8    1
(EJ517243) 1092955105592 Global-Ocean-Sampling_GS-29-01-01-1...    46   6.8    1
(EJ240701) 1095328044370 Global-Ocean-Sampling_GS-27-01-01-1...    46   6.8    1
(DU836565) MUGQ_CH252P012K23T7_GL268_086 CHORI-252 Vervet Mo...    46   6.8    1
(CR918919) Sus scrofa BES.                                         46   6.8    1
(CR238374) Reverse strand read from insert in 5'HPRT inserti...    46   6.8    1
(AG758298) Macaca fuscata fuscata DNA, clone: MSB2-226M16_R,...    46   6.8    1
(BZ870300) CH240_237N20.TJ CHORI-240 Bos taurus genomic clon...    46   6.8    1
(AG435535) Mus musculus molossinus DNA, clone:MSMg01-313K19....    46   6.8    1
(EC097303) AAE00000569 Acetabularia acetabulum Non-normalize...    46   6.8    1
(EC096985) AAE00001068 Acetabularia acetabulum Non-normalize...    46   6.8    1
(DW283862) UI-S-HH0-ady-d-04-0-UI.s1 UI-S-HH0 Euprymna scolo...    46   6.8    1
(DT057751) AGENCOURT_55787726 NICHD_XGC_FaBN Xenopus laevis ...    46   6.8    1
(DT057670) AGENCOURT_55789646 NICHD_XGC_FaBN Xenopus laevis ...    46   6.8    1
(CT846865) Oryza sativa Indica Group EST sequence:OSIGCRA207...    46   6.8    1
(BP739296) Xenopus laevis NBRP cDNA clone:XL519e23ex, 3' end.      46   6.8    1
(BP706958) Xenopus laevis NBRP cDNA clone:XL519e23ex, 5' end.      46   6.8    1
(BF951251) QV2-NN1195-071100-465-d11 NN1195 Homo sapiens cDN...    46   6.8    1
(FE744289) CAYC2217.g1 CAYC Petrolisthes cinctipes heart, ne...    46   6.8    1
(FE744288) CAYC2217.b1 CAYC Petrolisthes cinctipes heart, ne...    46   6.8    1
(FE535268) HA_MX2_79f11_SP6 Lobster Multiple Tissues, Normal...    46   6.8    1
(EX829208) CBNB1673.rev CBNB Phycomyces blakesleeanus NRRL15...    46   6.8    1
(AC068143) Sequence of BAC T2D23 from Arabidopsis thaliana c...    36   7.7    3
(AC202558) Rhesus Macaque  BAC CH250-326K17 () complete sequ...    40   8.1    4
(AJ271378) Homo sapiens mRNA, IMAGE clone 41448.                   44   8.6    2
(ER339125) 1092344329506 Global-Ocean-Sampling_GS-34-01-01-1...    32   9.5    4

>(BJ345656) Dictyostelium discoideum cDNA clone:dda28j12, 3' end,
            single read.
          Length = 768

 Score = 1433 bits (723), Expect(3) = 0.0
 Identities = 729/731 (99%)
 Strand = Plus / Minus


Query: 1732 agttttttattggcagcaatgacagcggcacacaaatcaattatcgcagggaaatccgaa 1791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768  agttttttattggcagcaatgacagcggcacacaaatcaattatcgcagggaaatccgaa 709


Query: 1792 gtatttgaaagtggaaccactacattgattggtggtatactggcaaagattaaaccagag 1851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  gtatttgaaagtggaaccactacattgattggtggtatactggcaaagattaaaccagag 649


Query: 1852 agtgaaaatataaagagaatgtccaatattcataatcatgctgtgggtggaattgaagat 1911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  agtgaaaatataaagagaatgtccaatattcataatcatgctgtgggtggaattgaagat 589


Query: 1912 catcaatcctcttcgagttgggtgtttgttggtgtgacattgggtgattgtaaagcattt 1971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  catcaatcctcttcgagttgggtgtttgttggtgtgacattgggtgattgtaaagcattt 529


Query: 1972 cactacagtaaaaaagatcacacctttagtgatataaccaaaggtaatcgtcaaaatgta 2031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528  cactacagtaaaaaagatcacacctttagtgatataaccaaaggtaatcgtcaaaatgta 469


Query: 2032 tcggatgcacgtgatccaggtggtaggttaggtccatacattagacaaggtgaacccgat 2091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468  tcggatgcacgtgatccaggtggtaggttaggtccatacattagacaaggtgaacccgat 409


Query: 2092 cttagaaatcttcaagtgttttataaactttgtgaccctgaagatttgatcctcttattg 2151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408  cttagaaatcttcaagtgttttataaactttgtgaccctgaagatttgatcctcttattg 349


Query: 2152 agtgatggtgttcatgataatttggatcctcaacaattgggtattaaaccaaatgaattg 2211
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 348  agtgatggtgttcatgataatttggattctcaacaattgggtattaaaccaaatgaattg 289


Query: 2212 ggtatcgatgaagaatcatgggataaagctgccataagtttcccaattgattctgaaaac 2271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288  ggtatcgatgaagaatcatgggataaagctgccataagtttcccaattgattctgaaaac 229


Query: 2272 gcaaaaaatgaatacagaaagagatggttgaatcaacatttttgctctgatcaaaatact 2331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228  gcaaaaaatgaatacagaaagagatggttgaatcaacatttttgctctgatcaaaatact 169


Query: 2332 ctcaatcaattggaaccaacatttatctcaaatactctattaaaacattgtttagataca 2391
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 168  ctcaatcaattggaaccatcatttatctcaaatactctattaaaacattgtttagataca 109


Query: 2392 actcaatcaagtagagattttatggaaacaaatacaagtaaaaaattaccttccgattat 2451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108  actcaatcaagtagagattttatggaaacaaatacaagtaaaaaattaccttccgattat 49


Query: 2452 agtttatatcc 2462
            |||||||||||
Sbjct: 48   agtttatatcc 38

 Score = 40.1 bits (20), Expect(3) = 0.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus


Query: 2479 aatacttgtttatgttttaaagt 2501
            ||||||||||||| |||||||||
Sbjct: 23   aatacttgtttatnttttaaagt 1

 Score = 28.2 bits (14), Expect(3) = 0.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 2464 ggtaaaatggatca 2477
            ||||||||||||||
Sbjct: 37   ggtaaaatggatca 24

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,630,306,788
Number of extensions: 154087366
Number of successful extensions: 12519337
Number of sequences better than 10.0: 185
Length of query: 2649
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2624
Effective length of database: 96,311,147,814
Effective search space: 252720451863936
Effective search space used: 252720451863936
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U15662-1 (Contig-U15662-1Q) /CSM_Contig/Contig-U15662-1Q.Seq.d
         (2649 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN357326_59(FN357326|pid:none) Schistosoma mansoni genome sequen...    96   5e-18
U41278_6(U41278|pid:none) Caenorhabditis elegans cosmid F33G12, ...    70   4e-10
AY089514_1(AY089514|pid:none) Drosophila melanogaster GH23026 fu...    64   4e-08
M98349_1(M98349|pid:none) Pneumocystis carinii immunodominant su...    37   2.9
BX897700_842(BX897700|pid:none) Bartonella quintana str. Toulous...    36   8.3

>FN357326_59(FN357326|pid:none) Schistosoma mansoni genome sequence
            supercontig Smp_scaff000035.
          Length = 693

 Score = 96.3 bits (238), Expect = 5e-18
 Identities = 87/280 (31%), Positives = 126/280 (45%), Gaps = 38/280 (13%)
 Frame = +1

Query: 1504 GKSGSSYPKHF-TGRRIGDPICDRFKVVVYKEKLLVTLADGCNWGRLPYEAATNATNGFI 1680
            G S S Y K+  TG+  G PI D F V    +   + +ADG NWG    +AA +A +
Sbjct: 137  GISVSLYEKNIITGKPNGGPIADAFVVRARHDSAYLAVADGVNWGNESMKAARSAISAIY 196

Query: 1681 SFLMENHLE--------VNTVRKAGSFLLAAMTAAHKSIIAGKSEVFESGTTTL-IGGIL 1833
            ++L E+HL         +   R A   L  A + A   I++       +G TTL +  IL
Sbjct: 197  TYL-ESHLFGHMKEKHIIKDTRDAAQLLFEAFSFAQDEIVS-----VTTGLTTLCVALIL 250

Query: 1834 AKIKPESENIKRMSNIHNHAVGGIEDHQSSSSWVFVGVTLGDCKAFHYSKKDHTFSDIT- 2010
              +   +    R++N    A G        + +  V  ++GDC+AF  SK  H   +IT
Sbjct: 251  PVLTTTTHESHRLTNEQTSAYG-------KAQFSVVIASVGDCQAFLLSKF-HGIREITG 302

Query: 2011 --------------KGNRQN---------VSDARDPGGRLGPYIRQGEPDLRNLQVFYKL 2121
                          + N Q+         V D RD GG LG   + G P+L NL     L
Sbjct: 303  WVRTSVLSSDNLSTQSNEQSKLEKELGPPVRDFRDTGGALGAVYKNGNPELNNLICAVTL 362

Query: 2122 CDPEDLILLLSDGVHDNLDP--QQLGI--KPNELGIDEES 2229
            CDP D++L+ SDG+ DN DP   QL +   P+   +DEE+
Sbjct: 363  CDPGDIVLIGSDGLIDNFDPVITQLAVPESPHLDFVDEEN 402

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,223,063,153
Number of extensions: 60432385
Number of successful extensions: 160605
Number of sequences better than 10.0: 5
Number of HSP's gapped: 160493
Number of HSP's successfully gapped: 6
Length of query: 883
Length of database: 1,051,180,864
Length adjustment: 138
Effective length of query: 745
Effective length of database: 604,535,722
Effective search space: 450379112890
Effective search space used: 450379112890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.24  top: 0.67  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15662-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 4
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0