>Contig-U03104-1 (Contig-U03104-1Q) /CSM_Contig/Contig-U03104-1Q.Seq.d
ATATATTAAGATTTAATATTATTAATTCAAAACCCATAACTTAAATTCAT
TTTAATAGTATTTTAAAATGAAATCAATTTTTAGTTTAAAAATAATTATA
TATAATTTCTATTATAATAATAATGATTGCTATAACAAGATTGGAAGCAG
TTCAATGCATTAATAAAGAATTGGGCACAAAGTATACAATTTTCGAAGAT
GAACCAACAAAAGATTATTTTAAAATAAAAGAAGGTGCAAAAAAATTAAC
TATTACTTTCTACCACTCAACTAATAATATCCAAATTCAAGGTTGTCAAG
AAGAAGAACGTGTAAAAATTAAGAATCTTTTAATGGAATTGAATCACCAA
AAGAATTATAATAATGAAAATTCTTTCTCAAAAGCTACAGATTTAGAAAC
AAAAAAAGTAGATAAAAAAGATGCAGATGGTGCAAACACCACTCAACAGA
CACCTAAAAAACTAAAAGCTTTAGTAGTTAACGGTAATAATGAAATTCAA
GAAAAGTATTCTAAAATGCTCGAAGATATGAACATTTCAATAGTATTATT
GGAAAGTAAGAATGGTAAAACCGACATTAAAAACTTTGAAAAAATAATTG
ATGGATGTGATTTTTGCCTTGTATTTGTCACTTATGATCTAGAATCCCAC
GACCCTGAATATGAAGAACATTATTACCCAAGATTTAATTTGATTTTCGA
AATGGGTCTATTATATGGTTTAATGGGTAAAAATAATACAATCTATGTAG
ATTTGGCTCCAAAAGGTAATAAATTACATGACTTTATTGCTGATATTCAA
GAATTAATTTGTGTATCCAATGANNNATGACTAAAGATTTAAAGAAAAAA
CTCGCCAAATTAGTAAAACAACACCAAGGTTAAAAAACATTTATAAACAA
TTTATATTGTTTTATAACTACNACAACACACAATAAAAAAATAAAAAAAT
TATACCAA

est1=CFB589E,1,959
est2=SSD484E,180,959
est3=SSB118F,397,613

ilrfniinskpit*ihfnsilk*nqflv*k*LYIISIIIIMIAITRLEAVQCINKELGTK
YTIFEDEPTKDYFKIKEGAKKLTITFYHSTNNIQIQGCQEEERVKIKNLLMELNHQKNYN
NENSFSKATDLETKKVDKKDADGANTTQQTPKKLKALVVNGNNEIQEKYSKMLEDMNISI
VLLESKNGKTDIKNFEKIIDGCDFCLVFVTYDLESHDPEYEEHYYPRFNLIFEMGLLYGL
MGKNNTIYVDLAPKGNKLHDFIADIQELICVSNXX*lki*rknspn**nntkvkkhl*ti
yivl*lxqhtikk*knyt

Frame A:
iy*dlilliqnp*lkfilivf*neinf*fknnyi*fll****ll*qdwkqfnaliknwaq
siqfskmnqqkiilk*kkvqkn*lllsttqliiskfkvvkkknv*klrif*wn*itkrii
imkilsqklqi*kqkk*ikkmqmvqtplnrhlkn*kl**ltvimkfkksilkcski*tfq
*yywkvrmvkptlktlkk*lmdvifalylslmi*npttlnmkniitqdli*fskwvyymv
*wvkiiqsm*iwlqkvinymtlllifkn*fvypmxxd*rfkektrqiskttprlkniykq
filfynyxntq*knkkiip


Frame B:
yiki*yy*fkthnlnsf**yfkmksifslkiiiynfyynnndcynkigsssmh**righk
vynfrr*tnkrlf*nkrrckkinyyflpln**ypnsrlsrrrtckn*esfngiespkel*
**kfflksyrfrnkksr*krcrwckhhstdt*ktksfss*r***nsrkvf*narryehfn
siigk*ew*nrh*kl*knn*wm*flpcichl*sriprp*i*rtllpki*fdfrngsiiwf
ng*k*ynlcrfgskr**it*lyc*ysrinlciq*xmtkdlkkklaklvkqhqg*ktfinn
lycfitttthnkkikklyq


Frame C:
ilrfniinskpit*ihfnsilk*nqflv*k*LYIISIIIIMIAITRLEAVQCINKELGTK
YTIFEDEPTKDYFKIKEGAKKLTITFYHSTNNIQIQGCQEEERVKIKNLLMELNHQKNYN
NENSFSKATDLETKKVDKKDADGANTTQQTPKKLKALVVNGNNEIQEKYSKMLEDMNISI
VLLESKNGKTDIKNFEKIIDGCDFCLVFVTYDLESHDPEYEEHYYPRFNLIFEMGLLYGL
MGKNNTIYVDLAPKGNKLHDFIADIQELICVSNXX*lki*rknspn**nntkvkkhl*ti
yivl*lxqhtikk*knyt

Query= Contig-U03104-1 (Contig-U03104-1Q)
/CSM_Contig/Contig-U03104-1Q.Seq.d
         (958 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03104-1 (Contig-U03104-1Q) /CSM_Contig/Conti...  1744  0.0
Contig-U12424-1 (Contig-U12424-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13639-1 (Contig-U13639-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U12275-1 (Contig-U12275-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U11777-1 (Contig-U11777-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U10398-1 (Contig-U10398-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U03444-1 (Contig-U03444-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U00454-1 (Contig-U00454-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U13844-1 (Contig-U13844-1Q) /CSM_Contig/Conti...    36  0.068
Contig-U06695-1 (Contig-U06695-1Q) /CSM_Contig/Conti...    32  1.1

>Contig-U03104-1 (Contig-U03104-1Q) /CSM_Contig/Contig-U03104-1Q.Seq.d
          Length = 958

 Score = 1744 bits (880), Expect = 0.0
 Identities = 920/934 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatattaagatttaatattattaattcaaaacccataacttaaattcattttaatagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atatattaagatttaatattattaattcaaaacccataacttaaattcattttaatagta 60

                                                                       
Query: 61  ttttaaaatgaaatcaatttttagtttaaaaataattatatataatttctattataataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttttaaaatgaaatcaatttttagtttaaaaataattatatataatttctattataataa 120

                                                                       
Query: 121 taatgattgctataacaagattggaagcagttcaatgcattaataaagaattgggcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taatgattgctataacaagattggaagcagttcaatgcattaataaagaattgggcacaa 180

                                                                       
Query: 181 agtatacaattttcgaagatgaaccaacaaaagattattttaaaataaaagaaggtgcnn 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 181 agtatacaattttcgaagatgaaccaacaaaagattattttaaaataaaagaaggtgcaa 240

                                                                       
Query: 241 nnnnnttaactattactttctaccactcaactaataatatccaaattcaaggttgtcaag 300
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaaattaactattactttctaccactcaactaataatatccaaattcaaggttgtcaag 300

                                                                       
Query: 301 aagaagaacgtgtaaaaattaagaatcttttaatggaattgaatcaccaaaagaattata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagaagaacgtgtaaaaattaagaatcttttaatggaattgaatcaccaaaagaattata 360

                                                                       
Query: 361 ataatgaaaattctttctcaaaagctacagatttagaaacnnnnnnngtagataaaaaag 420
           ||||||||||||||||||||||||||||||||||||||||       |||||||||||||
Sbjct: 361 ataatgaaaattctttctcaaaagctacagatttagaaacaaaaaaagtagataaaaaag 420

                                                                       
Query: 421 atgcagatggtgcaaacaccactcaacagacacctaaaaaactaaaagctttagtagtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgcagatggtgcaaacaccactcaacagacacctaaaaaactaaaagctttagtagtta 480

                                                                       
Query: 481 acggtaataatgaaattcaagaaaagtattctaaaatgctcgaagatatgaacatttcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acggtaataatgaaattcaagaaaagtattctaaaatgctcgaagatatgaacatttcaa 540

                                                                       
Query: 541 tagtattattggaaagtaagaatggtaaaaccgacattaaaaactttgaaaaaataattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagtattattggaaagtaagaatggtaaaaccgacattaaaaactttgaaaaaataattg 600

                                                                       
Query: 601 atggatgtgatttttgccttgtatttgtcacttatgatctagaatcccacgaccctgaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atggatgtgatttttgccttgtatttgtcacttatgatctagaatcccacgaccctgaat 660

                                                                       
Query: 661 atgaagaacattattacccaagatttaatttgattttcgaaatgggtctattatatggtt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgaagaacattattacccaagatttaatttgattttcgaaatgggtctattatatggtt 720

                                                                       
Query: 721 taatgggtaaaaataatacaatctatgtagatttggctccaaaaggtaataaattacatg 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 taatgggtaaaaataatacaatctatgtagatttggctccaaaaggtaataaattacatg 780

                                                                       
Query: 781 actttattgctgatattcaagaattaatttgtgtatccaatgannnatgactaaagattt 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 actttattgctgatattcaagaattaatttgtgtatccaatgannnatgactaaagattt 840

                                                                       
Query: 841 aaagaaaaaactcgccaaattagtaaaacaacaccaaggttaaaaaacatttataaacaa 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aaagaaaaaactcgccaaattagtaaaacaacaccaaggttaaaaaacatttataaacaa 900

                                             
Query: 901 tttatattgttttataactacnacaacacacaat 934
           ||||||||||||||||||||||||||||||||||
Sbjct: 901 tttatattgttttataactacnacaacacacaat 934


>Contig-U12424-1 (Contig-U12424-1Q) /CSM_Contig/Contig-U12424-1Q.Seq.d
          Length = 1370

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 64 taaaatgaaatcaattttta 83
          ||||||||||||||||||||
Sbjct: 18 taaaatgaaatcaattttta 37


>Contig-U13639-1 (Contig-U13639-1Q) /CSM_Contig/Contig-U13639-1Q.Seq.d
          Length = 598

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 64 taaaatgaaatcaattttt 82
          |||||||||||||||||||
Sbjct: 5  taaaatgaaatcaattttt 23


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,062
Number of Sequences: 6905
Number of extensions: 31062
Number of successful extensions: 2982
Number of sequences better than 10.0: 323
length of query: 958
length of database: 5,674,871
effective HSP length: 16
effective length of query: 942
effective length of database: 5,564,391
effective search space: 5241656322
effective search space used: 5241656322
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U03104-1 (Contig-U03104-1Q) /CSM_Contig/Contig-U03104-1Q.Seq.d
         (958 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ373728) Dictyostelium discoideum cDNA clone:ddc4a23, 3' e...   825   0.0    4
(C84687) Dictyostelium discoideum slug cDNA, clone SSD484.        825   0.0    3
(BJ360171) Dictyostelium discoideum cDNA clone:ddc4a23, 5' e...   424   0.0    5
(AU071282) Dictyostelium discoideum slug cDNA, clone SSB118.      408   e-109  1
(AU072132) Dictyostelium discoideum slug cDNA, clone SSD484.      238   e-104  3
(BH391513) AG-ND-105K10.TF ND-TAM Anopheles gambiae genomic ...    52   0.040  1
(D50601) Shigella sonnei genes for 26 ORFs, complete cds.          36   0.040  3
(CP001062) Shigella boydii CDC 3083-94 plasmid pBS512_211, c...    36   0.041  4
(AY206439) Shigella flexneri plasmid pINV_F6_M1382 IpaJ (ipa...    36   0.044  4
(CP000039) Shigella sonnei Ss046 plasmid pSS_046, complete s...    36   0.059  5
(CP000932) Campylobacter lari RM2100, complete genome.             36   0.12   17
(DE981047) Macropus eugenii DNA, BAC clone: MEB1-189M12_F, 5...    50   0.16   1
(AC087422) Caenorhabditis briggsae cosmid CB033P12, complete...    48   0.22   4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.23   14
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    40   0.44   13
(AP009049) Clostridium kluyveri NBRC 12016 DNA, complete gen...    36   0.53   21
(EJ540951) 1092955372957 Global-Ocean-Sampling_GS-29-01-01-1...    44   0.54   2
(AE017245) Mycoplasma synoviae 53, complete genome.                34   0.57   16
(AC068268) Homo sapiens chromosome 3 clone RP11-322F17 map 3...    42   0.59   2
(EJ168927) 1092344076340 Global-Ocean-Sampling_GS-27-01-01-1...    44   0.59   2
(EJ536298) 1092955261201 Global-Ocean-Sampling_GS-29-01-01-1...    44   0.61   2
(AJ003165) Populus trichocarpa cv. Trichobel ABI3 gene.            48   0.63   1
(AX348714) Sequence 172 from Patent WO0202807.                     48   0.63   1
(AX346119) Sequence 1190 from Patent WO0200928.                    48   0.63   1
(AX344753) Sequence 178 from Patent WO0200927.                     48   0.63   1
(AX344303) Sequence 150 from Patent WO0200926.                     48   0.63   1
(CU565334) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.63   1
(AC221084) Bos taurus clone CH240-392L6, WORKING DRAFT SEQUE...    48   0.63   1
(AM295250) Staphylococcus carnosus subsp. carnosus TM300 com...    48   0.63   1
(CP000673) Clostridium kluyveri DSM 555, complete genome.          36   0.66   21
(BX537307) Zebrafish DNA sequence from clone CH211-227H20 in...    40   0.75   4
(AC136006) Homo sapiens BAC clone RP11-588M17 from 2, comple...    44   0.75   4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.76   11
(CR786568) Zebrafish DNA sequence from clone DKEY-251I10 in ...    32   0.81   6
(AL355603) Human DNA sequence from clone RP11-394M3 on chrom...    38   0.84   6
(CG752076) P046-3-G10.za Ppa EcoRI BAC Library Pristionchus ...    38   0.87   2
(AC114185) Rattus norvegicus clone CH230-230C11, *** SEQUENC...    36   0.88   8
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.89   11
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   1.1    10
(CT573480) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   1.1    7
(AL161535) Arabidopsis thaliana DNA chromosome 4, contig fra...    40   1.2    6
(AC180706) Strongylocentrotus purpuratus clone R3-3083P1, WO...    42   1.2    7
(EJ450671) 1093015419584 Global-Ocean-Sampling_GS-28-01-01-1...    32   1.3    3
(AP004960) Lotus japonicus genomic DNA, chromosome 6, clone:...    36   1.3    2
(EK117901) 1092963265729 Global-Ocean-Sampling_GS-31-01-01-1...    44   1.5    2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    36   1.5    9
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    30   1.6    18
(AL031906) Human DNA sequence from clone RP1-90O12 on chromo...    34   1.6    5
(AL662897) Human DNA sequence from clone RP11-309C8 on chrom...    42   1.7    4
(CN777264) taf64g02.x1 Hydra EST Darmstadt I Hydra magnipapi...    34   1.7    2
(AX344559) Sequence 10 from Patent WO0200932.                      36   1.8    10
(U87145) Toxoplasma gondii chloroplast, complete genome.           34   1.9    5
(CZ989116) 205098 Tomato MboI BAC Library Solanum lycopersic...    44   1.9    2
(EK263703) 1095462199498 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.9    2
(BZ389329) EINEA46TF EI_10_12_KB Entamoeba invadens genomic ...    44   2.0    2
(AC002376) Sequence of BAC T1G11 from Arabidopsis thaliana c...    40   2.2    3
(AC092653) Homo sapiens BAC clone RP11-434P11 from 2, comple...    44   2.3    3
(AC165151) Mus musculus BAC clone RP24-77O15 from chromosome...    46   2.5    1
(AC156020) Mus musculus BAC clone RP23-343A9 from chromosome...    46   2.5    1
(AC131979) Mus musculus chromosome 16, clone RP24-156L5, com...    46   2.5    1
(EU669439) Vitis hybrid cultivar Regent VRP1-1, VRP1-2, and ...    46   2.5    1
(AM477179) Vitis vinifera contig VV78X070231.7, whole genome...    46   2.5    1
(AM461098) Vitis vinifera contig VV78X193539.3, whole genome...    46   2.5    1
(CT737286) Pig DNA sequence from clone CH242-125E23 on chrom...    46   2.5    1
(Z81086) Caenorhabditis elegans Cosmid F53B6.                      46   2.5    1
(AL359840) Human DNA sequence from clone RP11-179K10 on chro...    46   2.5    1
(AC007304) Homo sapiens chromosome 13 clone 168l22 map 13q14...    46   2.5    1
(AC153753) Sphoeroides nephelus clone 25P23, WORKING DRAFT S...    46   2.5    1
(AL590066) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   2.5    1
(BH135925) ENTOJ40TR Entamoeba histolytica Sheared DNA Entam...    46   2.5    1
(EK316804) 1095462415775 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.5    1
(EK062360) 1092960095022 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.5    1
(EJ897667) 1093018474710 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.5    1
(EJ870605) 1093018344918 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.5    1
(EJ858569) 1093017960150 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.5    1
(EJ210146) 1092345449983 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.5    1
(EJ094481) 1095460261246 Global-Ocean-Sampling_GS-26-01-01-1...    46   2.5    1
(DX427571) BE1070_O18_F IASMA L1 HindIII BAC library Vitis v...    46   2.5    1
(DE360014) Bombyx mori genomic DNA, BAC clone:BET_093_C16.         46   2.5    1
(BH765715) BMBAC357B05T7_PSU Brugia malayi Genomic Bac Libra...    46   2.5    1
(EC129619) HVE00004951 Hartmannella vermiformis Normalized l...    46   2.5    1
(CV847303) ID0AEE2BH07RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    46   2.5    1
(CT758606) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   2.5    1
(CB317008) AGENCOURT_12395650 NIH_MGC_165 Mus musculus cDNA ...    46   2.5    1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   2.5    14
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    34   2.7    8
(AX392734) Sequence 24 from Patent WO0212526.                      30   2.8    7
(AR707081) Sequence 24 from patent US 6933145.                     30   2.8    7
(AC146385) Pan troglodytes BAC clone RP43-126C6 from chromos...    36   2.9    8
(AC083860) Homo sapiens chromosome 7 clone RP11-3P18, comple...    36   3.1    9
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   3.1    20
(AL590790) Human DNA sequence from clone RP11-231M5 on chrom...    42   3.5    2
(AC067871) Homo sapiens chromosome 8, clone CTD-2026F11, com...    38   3.5    5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   3.5    13
(AC213414) Populus trichocarpa clone POP015-I11, complete se...    36   3.5    8
(AM488996) Vitis vinifera contig VV78X061225.9, whole genome...    42   3.5    3
(AC193224) Pan troglodytes BAC clone CH251-721H21 from chrom...    38   3.6    5
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    34   3.7    16
(AM465455) Vitis vinifera contig VV78X133505.7, whole genome...    44   3.8    2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    34   3.8    8
(AC234744) Brassica rapa subsp. pekinensis chromosome Linkag...    32   3.9    7
(CR457448) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    34   4.0    9
(AC141697) Apis mellifera clone CH224-56H22, *** SEQUENCING ...    38   4.3    7
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    36   4.7    9
(AC023023) Homo sapiens chromosome 5 clone RP11-195J17 map 5...    36   4.7    6
(AL391753) Shigella flexneri virulence plasmid pWR100: from ...    36   4.8    4
(CR940352) Theileria annulata genomic DNA chromosome 3.            34   5.2    18
(AF386526) Shigella flexneri 2a str. 301 virulence plasmid p...    36   5.3    4
(AF348706) Shigella flexneri 5a plasmid virulence plasmid pW...    36   5.3    4
(AC216599) Populus trichocarpa clone POP051-K05, complete se...    36   5.3    7
(AM457857) Vitis vinifera contig VV78X042775.2, whole genome...    40   5.3    4
(AM477795) Vitis vinifera contig VV78X066016.5, whole genome...    32   5.5    5
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       36   5.6    19
(DE156198) Bombyx mori genomic DNA, Fosmid clone:RO0299-D07_F.     36   5.7    2
(CT138946) Sus scrofa genomic clone PigE-178H12, genomic sur...    34   6.3    2
(AM437506) Vitis vinifera, whole genome shotgun sequence, co...    40   6.5    2
(AC186356) Gallus gallus BAC clone CH261-122I4 from chromoso...    38   6.5    5
(EJ345156) 1092963541831 Global-Ocean-Sampling_GS-28-01-01-1...    42   6.7    2
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    34   6.8    4
(AJ235271) Rickettsia prowazekii strain Madrid E, complete g...    34   7.0    11
(AC160406) Mus musculus 10 BAC RP24-406K6 (Roswell Park Canc...    42   7.3    6
(AC004745) Homo sapiens BAC clone CTA-281B9 from 7, complete...    36   7.4    4
(AM425542) Vitis vinifera contig VV78X166479.10, whole genom...    40   7.7    2
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    32   7.8    13
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   7.9    10
(AX458546) Sequence 92 from Patent WO0246454.                      32   7.9    5
(EK033334) 1092957442484 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.0    2
(FK912559) EST_lsal_evj_939092 lsalevj mixed_tissue_mixed_st...    40   8.1    2
(AC216955) Solanum tuberosum chromosome 6 clone RHPOTKEY174L...    34   8.1    7
(AM449099) Vitis vinifera contig VV78X175727.3, whole genome...    32   8.2    4
(AC096660) Homo sapiens BAC clone RP11-46G12 from 2, complet...    42   8.5    5
(AC154346) Mus musculus BAC clone RP24-503E4 from chromosome...    38   8.5    7
(ET718411) CHO_OF115xc20r1.ab1 CHO_OF Nicotiana tabacum geno...    34   9.3    3
(AL031671) Human DNA sequence from clone RP4-688G8 on chromo...    36   9.7    3
(EU593410) Crocodylus porosus clone CpP1209 microsatellite s...    44   9.8    1
(BV634781) S217P6786FF1.T0 Noemie Pan troglodytes troglodyte...    44   9.8    1
(BX470101) Mouse DNA sequence from clone RP23-217L21 on chro...    44   9.8    1
(BC095843) Rattus norvegicus cytidine monophospho-N-acetylne...    44   9.8    1
(AC113270) Mus musculus chromosome 7, clone RP23-375O10, com...    44   9.8    1
(AC111137) Mus musculus chromosome 5, clone RP23-357C4, comp...    44   9.8    1
(AC084054) Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP...    44   9.8    1
(AC192157) Pan troglodytes BAC clone CH251-490H18 from chrom...    44   9.8    1
(AC188080) Macaca mulatta chromosome UNK clone CH250-59H12, ...    44   9.8    1
(AX781291) Sequence 101 from Patent WO03034072.                    44   9.8    1
(AX781290) Sequence 1 from Patent WO03034072.                      44   9.8    1
(AF145052) Plasmodium berghei subtilisin-like protease precu...    44   9.8    1
(AL449063) Human DNA sequence from clone RP11-413P11 on chro...    44   9.8    1
(AC107081) Homo sapiens BAC clone RP11-681L4 from 2, complet...    44   9.8    1
(AC098822) Homo sapiens BAC clone RP11-338B23 from 4, comple...    44   9.8    1
(AC158864) Bos taurus clone CH240-88B14, WORKING DRAFT SEQUE...    44   9.8    1
(AC149689) Bos taurus clone CH240-506O13, WORKING DRAFT SEQU...    44   9.8    1
(FP236674) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(FP015867) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU986302) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU972477) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU861582) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU856449) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU693430) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(AC073029) Homo sapiens chromosome 3 clone RP11-335I3 map 3,...    44   9.8    1
(CT961044) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CT757509) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(AP008146) Lotus japonicus genomic DNA, chromosome 6, clone:...    44   9.8    1
(AP007817) Lotus japonicus genomic DNA, chromosome 6, clone:...    44   9.8    1
(AC221392) Bos taurus clone CH240-405N24, WORKING DRAFT SEQU...    44   9.8    1
(AC221191) Bos taurus clone CH240-397L9, WORKING DRAFT SEQUE...    44   9.8    1
(AC204197) Procavia capensis clone CH280-259F23, WORKING DRA...    44   9.8    1
(AC179341) Strongylocentrotus purpuratus clone R3-57P17, WOR...    44   9.8    1
(AC172132) Bos taurus clone CH240-310D12, WORKING DRAFT SEQU...    44   9.8    1
(AC163428) Bos taurus clone CH240-131C1, WORKING DRAFT SEQUE...    44   9.8    1
(AC163409) Mus musculus chromosome 7 clone RP24-374O15 map 7...    44   9.8    1
(AC163397) Mus musculus chromosome 7 clone RP24-308F10 map 7...    44   9.8    1
(AC023398) Homo sapiens clone RP11-770P21, WORKING DRAFT SEQ...    44   9.8    1
(CR749466) Homo sapiens mRNA; cDNA DKFZp686H12134 (from clon...    44   9.8    1
(AZ784769) 2M0028A05F Mouse 10kb plasmid UUGC1M library Mus ...    44   9.8    1
(FH924254) CHO_NF2021xa07f1.ab1 CHO_NF2 Nicotiana tabacum ge...    44   9.8    1
(ER559385) 1093015735498 Global-Ocean-Sampling_GS-36-01-01-2...    44   9.8    1
(EK496786) 1095505162172 Global-Ocean-Sampling_GS-32-01-01-1...    44   9.8    1
(EK478586) 1095469499595 Global-Ocean-Sampling_GS-32-01-01-1...    44   9.8    1
(EK394680) 1095469515325 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.8    1
(EK356872) 1095468598923 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.8    1
(EK305018) 1095462377821 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.8    1
(EK220085) 1095460137780 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.8    1
(EK127127) 1092989900928 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.8    1
(EK107515) 1092963066328 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.8    1
(EJ601113) 1092961183627 Global-Ocean-Sampling_GS-29-01-01-1...    44   9.8    1
(EJ595263) 1092961077370 Global-Ocean-Sampling_GS-29-01-01-1...    44   9.8    1
(EJ462736) 1093023077009 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.8    1
(EJ288443) 1095370003038 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.8    1
(DX926891) MUGQ_CH252P076I10T7_EJ33_087 CHORI-252 Vervet Mon...    44   9.8    1
(CZ823804) OC__Ba0203C15.f OC__Ba Oryza coarctata genomic cl...    44   9.8    1
(CZ814047) OC__Ba0189O23.r OC__Ba Oryza coarctata genomic cl...    44   9.8    1
(CZ806090) OC__Ba0179E01.f OC__Ba Oryza coarctata genomic cl...    44   9.8    1
(CZ804558) OC__Ba0177C24.f OC__Ba Oryza coarctata genomic cl...    44   9.8    1
(CW908477) RPCI42_148B2.TV RPCI-42 Bos taurus genomic clone ...    44   9.8    1
(CW273401) 104_745_11403879_148_35360_050 Sorghum methylatio...    44   9.8    1
(CW176010) 104_588_11158259_148_36579_036 Sorghum methylatio...    44   9.8    1
(CT374211) Sus scrofa genomic clone CH242-307B14, genomic su...    44   9.8    1
(CT329467) Sus scrofa genomic clone CH242-353G14, genomic su...    44   9.8    1
(CR865434) Sus scrofa BES.                                         44   9.8    1
(CR865414) Sus scrofa BES.                                         44   9.8    1
(CE760945) tigr-gss-dog-17000370020220 Dog Library Canis lup...    44   9.8    1
(BZ787114) PUFDJ62TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   9.8    1
(BZ570990) msh2_1657.x1 msh Pseudomonas aeruginosa genomic c...    44   9.8    1
(BH999483) oei36d01.g1 B.oleracea002 Brassica oleracea genom...    44   9.8    1
(BH928109) odi35d03.b1 B.oleracea002 Brassica oleracea genom...    44   9.8    1
(BH734639) BOMKI31TF BO_2_3_KB Brassica oleracea genomic clo...    44   9.8    1
(BH696109) BOMOH41TF BO_2_3_KB Brassica oleracea genomic clo...    44   9.8    1
(AG168915) Pan troglodytes DNA, clone: RP43-037G22.T7.             44   9.8    1
(CN540717) UI-R-DN1-ckh-c-24-0-UI.s1 UI-R-DN1 Rattus norvegi...    44   9.8    1
(CK163204) FGAS015824 Triticum aestivum FGAS: Library 4 Gate...    44   9.8    1
(BU689869) UI-CF-FN0-aet-j-19-0-UI.s1 UI-CF-FN0 Homo sapiens...    44   9.8    1
(BU677545) UI-CF-DU1-aaq-p-19-0-UI.s1 UI-CF-DU1 Homo sapiens...    44   9.8    1
(BQ573819) UI-H-EZ0-bax-e-05-0-UI.s1 NCI_CGAP_Ch1 Homo sapie...    44   9.8    1
(BQ195786) UI-R-CN1-cmq-p-10-0-UI.s1 UI-R-CN1 Rattus norvegi...    44   9.8    1
(BM253606) 514740 MARC 3BOV Bos taurus cDNA 5', mRNA sequence.     44   9.8    1
(CT573072) Kuenenia stuttgartiensis genome fragment KUST_D (...    44   9.8    1
(CP000885) Clostridium phytofermentans ISDg, complete genome.      44   9.8    1
(CP000771) Fervidobacterium nodosum Rt17-B1, complete genome.      44   9.8    1
(AE017263) Mesoplasma florum L1 complete genome.                   44   9.8    1
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g...    40   9.8    18

>(BJ373728) Dictyostelium discoideum cDNA clone:ddc4a23, 3' end,
           single read.
          Length = 698

 Score =  825 bits (416), Expect(4) = 0.0
 Identities = 416/416 (100%)
 Strand = Plus / Minus


Query: 408 gtagataaaaaagatgcagatggtgcaaacaccactcaacagacacctaaaaaactaaaa 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtagataaaaaagatgcagatggtgcaaacaccactcaacagacacctaaaaaactaaaa 485


Query: 468 gctttagtagttaacggtaataatgaaattcaagaaaagtattctaaaatgctcgaagat 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gctttagtagttaacggtaataatgaaattcaagaaaagtattctaaaatgctcgaagat 425


Query: 528 atgaacatttcaatagtattattggaaagtaagaatggtaaaaccgacattaaaaacttt 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atgaacatttcaatagtattattggaaagtaagaatggtaaaaccgacattaaaaacttt 365


Query: 588 gaaaaaataattgatggatgtgatttttgccttgtatttgtcacttatgatctagaatcc 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaaaaaataattgatggatgtgatttttgccttgtatttgtcacttatgatctagaatcc 305


Query: 648 cacgaccctgaatatgaagaacattattacccaagatttaatttgattttcgaaatgggt 707
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cacgaccctgaatatgaagaacattattacccaagatttaatttgattttcgaaatgggt 245


Query: 708 ctattatatggtttaatgggtaaaaataatacaatctatgtagatttggctccaaaaggt 767
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctattatatggtttaatgggtaaaaataatacaatctatgtagatttggctccaaaaggt 185


Query: 768 aataaattacatgactttattgctgatattcaagaattaatttgtgtatccaatga 823
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aataaattacatgactttattgctgatattcaagaattaatttgtgtatccaatga 129

 Score =  216 bits (109), Expect(4) = 0.0
 Identities = 109/109 (100%)
 Strand = Plus / Minus


Query: 257 tttctaccactcaactaataatatccaaattcaaggttgtcaagaagaagaacgtgtaaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tttctaccactcaactaataatatccaaattcaaggttgtcaagaagaagaacgtgtaaa 639


Query: 317 aattaagaatcttttaatggaattgaatcaccaaaagaattataataat 365
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aattaagaatcttttaatggaattgaatcaccaaaagaattataataat 590

 Score =  198 bits (100), Expect(4) = 0.0
 Identities = 103/103 (100%)
 Strand = Plus / Minus


Query: 832 taaagatttaaagaaaaaactcgccaaattagtaaaacaacaccaaggttaaaaaacatt 891
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 taaagatttaaagaaaaaactcgccaaattagtaaaacaacaccaaggttaaaaaacatt 69


Query: 892 tataaacaatttatattgttttataactacnacaacacacaat 934
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tataaacaatttatattgttttataactacnacaacacacaat 26

 Score = 77.8 bits (39), Expect(4) = 0.0
 Identities = 42/43 (97%)
 Strand = Plus / Minus


Query: 358 ataataatgaaaattctttctcaaaagctacagatttagaaac 400
           |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 594 ataatattgaaaattctttctcaaaagctacagatttagaaac 552

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,253,332,123
Number of extensions: 82947012
Number of successful extensions: 7182282
Number of sequences better than 10.0: 221
Length of query: 958
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 934
Effective length of database: 99,340,224,878
Effective search space: 92783770036052
Effective search space used: 92783770036052
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U03104-1 (Contig-U03104-1Q) /CSM_Contig/Contig-U03104-1Q.Seq.d
         (958 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A90521(A90521) hypothetical protein MYPU_0730 [imported] - Mycop...    53   2e-05
EF611303_20(EF611303|pid:none) Pseudomonas aeruginosa PAGI-7 gen...    42   0.031
CP000552_1397(CP000552|pid:none) Prochlorococcus marinus str. MI...    40   0.15
AE015927_1213(AE015927|pid:none) Clostridium tetani E88, complet...    40   0.15
AF258781_1(AF258781|pid:none) Plasmodium falciparum erythrocyte ...    39   0.20
AE014188_377(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.20
AJ251848_1(AJ251848|pid:none) Plasmodium reichenowi partial EBP ...    39   0.20
AC116984_32(AC116984|pid:none) Dictyostelium discoideum chromoso...    39   0.20
AL844506_105(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.34
AL844509_194(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.59
DQ336395_37(DQ336395|pid:none) Dictyostelium citrinum mitochondr...    38   0.59
AE009951_1673(AE009951|pid:none) Fusobacterium nucleatum subsp. ...    37   0.77
AL844505_44(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.77
CP000233_101(CP000233|pid:none) Lactobacillus salivarius UCC118,...    37   1.0
CP000939_1209(CP000939|pid:none) Clostridium botulinum B1 str. O...    37   1.0
CP000159_1132(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    37   1.3
CP000947_1153(CP000947|pid:none) Haemophilus somnus 2336, comple...    37   1.3
BT058883_1(BT058883|pid:none) Salmo salar clone ssal-rgf-510-379...    37   1.3
CP000867_1319(CP000867|pid:none) Methanococcus maripaludis C6, c...    37   1.3
CP001279_1420(CP001279|pid:none) Nautilia profundicola AmH, comp...    36   1.7
T31550(T31550)hypothetical protein Y47D3A.26 - Caenorhabditis el...    36   1.7
CP000414_981(CP000414|pid:none) Leuconostoc mesenteroides subsp....    36   1.7
AF056936_1(AF056936|pid:none) Plasmodium falciparum mature paras...    36   1.7
AE014188_155(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.2
AM999887_227(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    36   2.2
CP000678_515(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    36   2.2
AE014185_169(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.2
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    36   2.2
CP000559_1587(CP000559|pid:none) Methanocorpusculum labreanum Z,...    35   2.9
AE014188_146(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.9
M69183_1(M69183|pid:none) Plasmodium falciparum (MESA) mRNA exon...    35   2.9
AL844504_8(AL844504|pid:none) Plasmodium falciparum 3D7 chromoso...    35   2.9
A45605(A45605;A54517)mature-parasite-infected erythrocyte surfac...    35   2.9
CU207366_2748(CU207366|pid:none) Gramella forsetii KT0803 comple...    35   2.9
AY277503_1(AY277503|pid:none) Plasmodium falciparum isolate Hond...    35   2.9
AL844509_184(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.9
AE005673_2679(AE005673|pid:none) Caulobacter crescentus CB15, co...    35   3.8
AY551966_1(AY551966|pid:none) Caenorhabditis elegans TRR-1 (trr-...    35   3.8
Z69902_2(Z69902|pid:none) Caenorhabditis elegans Cosmid C47D12, ...    35   3.8
Z69902_3(Z69902|pid:none) Caenorhabditis elegans Cosmid C47D12, ...    35   3.8
CP001322_3344(CP001322|pid:none) Desulfatibacillum alkenivorans ...    35   3.8
AE014186_245(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.8
AE014185_277(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.0
CR940347_295(CR940347|pid:none) Theileria annulata strain Ankara...    35   5.0
T18372(T18372) repeat organellar protein - Plasmodium chabaudi  ...    35   5.0
AC116986_66(AC116986|pid:none) Dictyostelium discoideum chromoso...    35   5.0
AE014187_250(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.0
AE014185_210(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.0
AL844508_220(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.0
AL844507_87(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   5.0
AY696415_1(AY696415|pid:none) Borrelia burgdorferi strain 160b p...    35   5.0
AF474339_1(AF474339|pid:none) Dictyostelium discoideum ABC trans...    35   5.0
(Q54EK2) RecName: Full=ABC transporter C family member 7; AltNam...    35   5.0
AY328139_1(AY328139|pid:none) Plasmodium gallinaceum clone Pgs-c...    34   6.5
CP001083_2188(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    34   6.5
FM954973_1248(FM954973|pid:none) Vibrio splendidus LGP32 chromos...    34   6.5
AL844505_59(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    34   6.5
CR936503_1518(CR936503|pid:none) Lactobacillus sakei strain 23K ...    34   6.5
CP001056_2389(CP001056|pid:none) Clostridium botulinum B str. Ek...    34   6.5
CP000413_988(CP000413|pid:none) Lactobacillus gasseri ATCC 33323...    34   6.5
CP001034_389(CP001034|pid:none) Natranaerobius thermophilus JW/N...    34   6.5
S78045(S78045;S23690)erythrocyte membrane-associated antigen (cl...    34   6.5
FN357475_5(FN357475|pid:none) Schistosoma mansoni genome sequenc...    34   6.5
AE017243_393(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp...    34   6.5
AF426177_1(AF426177|pid:none) Cryptosporidium parvum inosine-5-m...    34   6.5
AP008981_1767(AP008981|pid:none) Orientia tsutsugamushi str. Ike...    34   6.5
(Q95PI2) RecName: Full=Hybrid signal transduction histidine kina...    34   6.5
CP000312_1813(CP000312|pid:none) Clostridium perfringens SM101, ...    34   6.5
AL844502_79(AL844502|pid:none) Plasmodium falciparum 3D7 chromos...    34   6.5
AF547984_42(AF547984|pid:none) Adoxophyes orana granulovirus, co...    34   8.5
AM910987_203(AM910987|pid:none) Plasmodium knowlesi strain H chr...    34   8.5
AE017126_568(AE017126|pid:none) Prochlorococcus marinus subsp. m...    34   8.5
CP000462_1941(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...    34   8.5
CR382399_65(CR382399|pid:none) Plasmodium falciparum chromosome ...    34   8.5
CP000742_1546(CP000742|pid:none) Methanococcus vannielii SB, com...    34   8.5
AE014186_94(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    34   8.5
CP001104_1362(CP001104|pid:none) Eubacterium eligens ATCC 27750,...    34   8.5
AE016827_2364(AE016827|pid:none) Mannheimia succiniciproducens M...    34   8.5
CP001614_1576(CP001614|pid:none) Teredinibacter turnerae T7901, ...    34   8.5
AM412317_2079(AM412317|pid:none) Clostridium botulinum A str. AT...    34   8.5

>A90521(A90521) hypothetical protein MYPU_0730 [imported] -
           Mycoplasma pulmonis (strain UAB CTIP)
           &AL445563_73(AL445563|pid:none)
          Length = 231

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
 Frame = +3

Query: 225 IKEGAKKLTITFYHSTNNIQIQGCQEEERVKIKNLLMELNHQKNYNNENSFSKATDLETK 404
           IK    K+ + ++ ST NIQ QG              +LN        +S  K  +L+ K
Sbjct: 33  IKASKDKIHMNWFQSTGNIQFQG--------------KLN--------DSDKKDIELKIK 70

Query: 405 KVDKKDADGANTTQQTPKKLKALVVNGNNEIQEKYSK-MLEDMNISIVLLESKN--GKTD 575
            + + +     TT    K  K  +V+G+++I     K +L D+ +++V+ ++K   G +
Sbjct: 71  NLSENNNSDNTTTMPNIKNDKVFIVHGHDKIALLELKDLLRDLKLNVVISQNKTTRGLSI 130

Query: 576 IKNFEKIIDGCDFCLVFVTYDLESH---DPEYEEHYYPRFNLIFEMGLLYGLMGKNNTIY 746
           +    + I    F    +T D + +   D E +     R N+IFEMG+LYG + KN  +
Sbjct: 131 LDGVLEDISSVSFAFDLLTPDDKGYSNLDGESKTLPRARQNVIFEMGMLYGKLPKNKIMI 190

Query: 747 VD 752
           ++
Sbjct: 191 LN 192

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,260,798,797
Number of extensions: 23399480
Number of successful extensions: 59144
Number of sequences better than 10.0: 80
Number of HSP's gapped: 59007
Number of HSP's successfully gapped: 83
Length of query: 319
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 191
Effective length of database: 636,901,312
Effective search space: 121648150592
Effective search space used: 121648150592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 1.00  gvh: 0.54  alm: 0.24  top: 0.53  tms: 0.07  mit: 0.30  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 1.67  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U03104-1 is end