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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15651-1
Contig ID Contig-U15651-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15651-1 (Contig-U15651-1Q) /CSM_Contig/Contig-U15651-1Q.Seq.d
ACTGTTGGCCTACTGGATACTATTTAATTTATTTATTTATTTATTTATTT
ATTCATTAATTATATATTCATTTATTATAATAAGAATAAAAAAAAAAAAA
AATGGNTTAAAAAAAAAA----------TAATATCAATGGTGAAATTGAA
AGTGGTGCAGGATCATTCAAACTTTATTCATTCTATGATTATTTACCCCA
ATCAAATTATTATTATGTATTAATGAATCAAGGTGGATCAGCACCAATTT
TCTCACTTATAGATGCAAATAATGGTGGTGATAAAGTTAAATATGTTTTC
AATATTTTCAATACACCATTCGTTCCAATTTTTGATGATATTGAAAAATC
AATGATCTATGGTGCTTATGGTATTTATAAATTAAATAAATTACCAACAC
AAAGAAGTGATGCTCAAGATGCAACATTAATTTATCAATCACAAATTGTT
AATGGTTTAGCAAAAGATGGTAATGATTTATATATGTCAACTTATGATGG
TAAATTCTTAAAAGGTAAAGCTGATTGTTCAAATTGTACAAAAGATCAAT
TGATTGAAATTGGTAGTGATACTGATGCAAGTCATTTAACTGATTTCTTA
GTCGAGGGTGATTTAATTGTATTCTCTCTAATATCAATGGTGAAATTGAA
AGTGGTGCAGGATCATTCAAACTTTATTCATTCTATGATTATTTACCCCA
ATCAAATTATTATTATGTATTAATGAATCAAGGTGGATCAGCACCAATTT
TCTCACTTATAGATGCAAATAATGGTGGTGATAAAGTTAAATATGTTTTC
AATATTTTCAATACACCATTCGTTCCAATTTTTGATGATATTGAAAAATC
AATGATCTATGGTGCTTATGGTATTTATAAATTAAATAAATTACCAACAC
AAAGAAGTGATGCTCAAGATGCAACATTAATTTATCAATCACAAATTGTT
AATGGTTTAGCAAAAGATGGTAATGATTTATATATGTCAACTTATGATGG
TAAATTCTTAAAAGGTAAAGCTGATTGTTCAAATTGTACAAAAGATCAAT
TGATTGAAATTGGTAGTGATACTGATGCAAGTCATTTAACTGATTTCTTA
GTCGAGGGTGATTTAATTGTATTCTCTCATTCAAATGGTATAACTGCTTA
TTCAAAATCTGCTAACTCTAATCAAGCCATTAAATTAATCACTGGTGAAA
ATGTAATTTCAATGGTTTCAAAGGGTGGTGTCATTTATTATACAACTAAA
GATGGTATTGTTAAATCAATTGGTATTGATGGTAAAAATGGTAAAACTAT
TTATACACCAACTTCCAATCATCAATGTCAAGCTGCTGTTGGTTTCCAAT
CAATTGATGGTGTTTGTAAAGGTAAAACCTTATGGTATAATGGTATTCCA
ACTTGTACTCCATTAGGTGAAGGTGGTATCCCTGCTCAATGTTTCACAAG
TGTTGATTGTGGTCCAACTCCATATTTCACTTGTAATGGTACTTGTGGAT
GTGTTAA
Gap gap included
Contig length 1497
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3137738
End point 3138633
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 9
Link to clone list U15651
List of clone(s) 

est1=AFO156F,1,118
est2=AFK877F,9,118
est3=AFK877X,119,1118
est4=SSG726F,758,1334
est5=CFJ676Z,855,1449
est6=AFB889Z,869,1434
est7=CFH584Z,946,1478
est8=CHD243Z,968,1497
est9=AFK877Z,1188,1437
Translated Amino Acid sequence 
LLAYWILFNLFIYLFIYSLIIYSFIIIRIKKKKNGLKKK---

---NINGEIESGAGSFKLYSFYDYLPQSNYYYVLMNQGGSAPIFSLIDANNGGDKVKYVF
NIFNTPFVPIFDDIEKSMIYGAYGIYKLNKLPTQRSDAQDATLIYQSQIVNGLAKDGNDL
YMSTYDGKFLKGKADCSNCTKDQLIEIGSDTDASHLTDFLVEGDLIVFSLISMVKLKVVQ
DHSNFIHSMIIYPNQIIIMY**ikvdqhqfshl*mqimvviklnmfsifsihhsfqflmi
lknq*smvlmvfin*inyqhkevmlkmqh*finhkllmv*qkmvmiyicqlmmvns*kvk
livqivqkin*lklvvilmqvi*lis*srvi*lysliqmv*lliqnlltlikpln*slvk
m*fqwfqrvvsfiiqlkmvllnqlvlmvkmvklfihqlpiinvklllvsnqlmvfvkvkp
ygimvfqlvlh*vkvvsllnvsqvlivvqlhislvmvlvdvl
Translated Amino Acid sequence (All Frames) 
Frame A:
tvglldti*fiylfiylfinyifiyynknkkkkkwxkkk---

---*yqw*n*kwcriiqtlfil*lftpiklllcinesrwistnfltyrck*ww**s*icf
qyfqytirsnf**y*kindlwclwyl*ik*itntkk*csrcninlsitnc*wfskrw**f
iyvnl*w*ilkr*s*lfklykrsid*nw**y*cksfn*flsrg*fncilsningeiesga
gsfklysfydylpqsnyyyvlmnqggsapifslidannggdkvkyvfnifntpfvpifdd
ieksmiygaygiyklnklptqrsdaqdatliyqsqivnglakdgndlymstydgkflkgk
adcsnctkdqlieigsdtdashltdflvegdlivfshsngitaysksansnqaiklitge
nvismvskggviyyttkdgivksigidgkngktiytptsnhqcqaavgfqsidgvckgkt
lwyngiptctplgeggipaqcftsvdcgptpyftcngtcgcv

Frame B:
LLAYWILFNLFIYLFIYSLIIYSFIIIRIKKKKNGLKKK---

---NINGEIESGAGSFKLYSFYDYLPQSNYYYVLMNQGGSAPIFSLIDANNGGDKVKYVF
NIFNTPFVPIFDDIEKSMIYGAYGIYKLNKLPTQRSDAQDATLIYQSQIVNGLAKDGNDL
YMSTYDGKFLKGKADCSNCTKDQLIEIGSDTDASHLTDFLVEGDLIVFSLISMVKLKVVQ
DHSNFIHSMIIYPNQIIIMY**ikvdqhqfshl*mqimvviklnmfsifsihhsfqflmi
lknq*smvlmvfin*inyqhkevmlkmqh*finhkllmv*qkmvmiyicqlmmvns*kvk
livqivqkin*lklvvilmqvi*lis*srvi*lysliqmv*lliqnlltlikpln*slvk
m*fqwfqrvvsfiiqlkmvllnqlvlmvkmvklfihqlpiinvklllvsnqlmvfvkvkp
ygimvfqlvlh*vkvvsllnvsqvlivvqlhislvmvlvdvl

Frame C:
cwptgyyliylfiylfih*lyihll**e*kkkkmx*kk---

---ismvklkvvqdhsnfihsmiiypnqiiimy**ikvdqhqfshl*mqimvviklnmfs
ifsihhsfqflmilknq*smvlmvfin*inyqhkevmlkmqh*finhkllmv*qkmvmiy
icqlmmvns*kvklivqivqkin*lklvvilmqvi*lis*srvi*lysl*yqw*n*kwcr
iiqtlfil*lftpiklllcinesrwistnfltyrck*ww**s*icfqyfqytirsnf**y
*kindlwclwyl*ik*itntkk*csrcninlsitnc*wfskrw**fiyvnl*w*ilkr*s
*lfklykrsid*nw**y*cksfn*flsrg*fncilsfkwynclfkic*l*ssh*inhw*k
cnfngfkgwchllyn*rwyc*inwy*w*kw*nylytnfqssmssccwfpin*wcl*r*nl
mv*wysnlysir*rwypcsmfhkc*lwsnsifhl*wylwmc*
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15651-1 (Contig-U15651-1Q)
/CSM_Contig/Contig-U15651-1Q.Seq.d
         (1507 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15651-1 (Contig-U15651-1Q) /CSM_Contig/Conti...  2734  0.0
Contig-U15330-1 (Contig-U15330-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U09566-1 (Contig-U09566-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U16314-1 (Contig-U16314-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U15926-1 (Contig-U15926-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U15883-1 (Contig-U15883-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U15827-1 (Contig-U15827-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U15656-1 (Contig-U15656-1Q) /CSM_Contig/Conti...    38  0.039
Contig-U15606-1 (Contig-U15606-1Q) /CSM_Contig/Conti...    38  0.039

>Contig-U15651-1 (Contig-U15651-1Q) /CSM_Contig/Contig-U15651-1Q.Seq.d
          Length = 1507

 Score = 2734 bits (1379), Expect = 0.0
 Identities = 1379/1379 (100%)
 Strand = Plus / Plus

                                                                        
Query: 129  taatatcaatggtgaaattgaaagtggtgcaggatcattcaaactttattcattctatga 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129  taatatcaatggtgaaattgaaagtggtgcaggatcattcaaactttattcattctatga 188

                                                                        
Query: 189  ttatttaccccaatcaaattattattatgtattaatgaatcaaggtggatcagcaccaat 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189  ttatttaccccaatcaaattattattatgtattaatgaatcaaggtggatcagcaccaat 248

                                                                        
Query: 249  tttctcacttatagatgcaaataatggtggtgataaagttaaatatgttttcaatatttt 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249  tttctcacttatagatgcaaataatggtggtgataaagttaaatatgttttcaatatttt 308

                                                                        
Query: 309  caatacaccattcgttccaatttttgatgatattgaaaaatcaatgatctatggtgctta 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309  caatacaccattcgttccaatttttgatgatattgaaaaatcaatgatctatggtgctta 368

                                                                        
Query: 369  tggtatttataaattaaataaattaccaacacaaagaagtgatgctcaagatgcaacatt 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369  tggtatttataaattaaataaattaccaacacaaagaagtgatgctcaagatgcaacatt 428

                                                                        
Query: 429  aatttatcaatcacaaattgttaatggtttagcaaaagatggtaatgatttatatatgtc 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  aatttatcaatcacaaattgttaatggtttagcaaaagatggtaatgatttatatatgtc 488

                                                                        
Query: 489  aacttatgatggtaaattcttaaaaggtaaagctgattgttcaaattgtacaaaagatca 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  aacttatgatggtaaattcttaaaaggtaaagctgattgttcaaattgtacaaaagatca 548

                                                                        
Query: 549  attgattgaaattggtagtgatactgatgcaagtcatttaactgatttcttagtcgaggg 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  attgattgaaattggtagtgatactgatgcaagtcatttaactgatttcttagtcgaggg 608

                                                                        
Query: 609  tgatttaattgtattctctctaatatcaatggtgaaattgaaagtggtgcaggatcattc 668
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  tgatttaattgtattctctctaatatcaatggtgaaattgaaagtggtgcaggatcattc 668

                                                                        
Query: 669  aaactttattcattctatgattatttaccccaatcaaattattattatgtattaatgaat 728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  aaactttattcattctatgattatttaccccaatcaaattattattatgtattaatgaat 728

                                                                        
Query: 729  caaggtggatcagcaccaattttctcacttatagatgcaaataatggtggtgataaagtt 788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  caaggtggatcagcaccaattttctcacttatagatgcaaataatggtggtgataaagtt 788

                                                                        
Query: 789  aaatatgttttcaatattttcaatacaccattcgttccaatttttgatgatattgaaaaa 848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  aaatatgttttcaatattttcaatacaccattcgttccaatttttgatgatattgaaaaa 848

                                                                        
Query: 849  tcaatgatctatggtgcttatggtatttataaattaaataaattaccaacacaaagaagt 908
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  tcaatgatctatggtgcttatggtatttataaattaaataaattaccaacacaaagaagt 908

                                                                        
Query: 909  gatgctcaagatgcaacattaatttatcaatcacaaattgttaatggtttagcaaaagat 968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  gatgctcaagatgcaacattaatttatcaatcacaaattgttaatggtttagcaaaagat 968

                                                                        
Query: 969  ggtaatgatttatatatgtcaacttatgatggtaaattcttaaaaggtaaagctgattgt 1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  ggtaatgatttatatatgtcaacttatgatggtaaattcttaaaaggtaaagctgattgt 1028

                                                                        
Query: 1029 tcaaattgtacaaaagatcaattgattgaaattggtagtgatactgatgcaagtcattta 1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 tcaaattgtacaaaagatcaattgattgaaattggtagtgatactgatgcaagtcattta 1088

                                                                        
Query: 1089 actgatttcttagtcgagggtgatttaattgtattctctcattcaaatggtataactgct 1148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 actgatttcttagtcgagggtgatttaattgtattctctcattcaaatggtataactgct 1148

                                                                        
Query: 1149 tattcaaaatctgctaactctaatcaagccattaaattaatcactggtgaaaatgtaatt 1208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 tattcaaaatctgctaactctaatcaagccattaaattaatcactggtgaaaatgtaatt 1208

                                                                        
Query: 1209 tcaatggtttcaaagggtggtgtcatttattatacaactaaagatggtattgttaaatca 1268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 tcaatggtttcaaagggtggtgtcatttattatacaactaaagatggtattgttaaatca 1268

                                                                        
Query: 1269 attggtattgatggtaaaaatggtaaaactatttatacaccaacttccaatcatcaatgt 1328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 attggtattgatggtaaaaatggtaaaactatttatacaccaacttccaatcatcaatgt 1328

                                                                        
Query: 1329 caagctgctgttggtttccaatcaattgatggtgtttgtaaaggtaaaaccttatggtat 1388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 caagctgctgttggtttccaatcaattgatggtgtttgtaaaggtaaaaccttatggtat 1388

                                                                        
Query: 1389 aatggtattccaacttgtactccattaggtgaaggtggtatccctgctcaatgtttcaca 1448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 aatggtattccaacttgtactccattaggtgaaggtggtatccctgctcaatgtttcaca 1448

                                                                       
Query: 1449 agtgttgattgtggtccaactccatatttcacttgtaatggtacttgtggatgtgttaa 1507
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 agtgttgattgtggtccaactccatatttcacttgtaatggtacttgtggatgtgttaa 1507


 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 64 atattcatttattataataagaat 87
          ||||||||||||||||||||||||
Sbjct: 64 atattcatttattataataagaat 87


 Score = 40.1 bits (20), Expect = 0.010
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  actgttggcctactggatac 20
          ||||||||||||||||||||
Sbjct: 1  actgttggcctactggatac 20


>Contig-U15330-1 (Contig-U15330-1Q) /CSM_Contig/Contig-U15330-1Q.Seq.d
          Length = 1034

 Score = 40.1 bits (20), Expect = 0.010
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  actgttggcctactggatac 20
          ||||||||||||||||||||
Sbjct: 2  actgttggcctactggatac 21


>Contig-U09566-1 (Contig-U09566-1Q) /CSM_Contig/Contig-U09566-1Q.Seq.d
          Length = 1112

 Score = 40.1 bits (20), Expect = 0.010
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  actgttggcctactggatac 20
          ||||||||||||||||||||
Sbjct: 1  actgttggcctactggatac 20


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,275
Number of Sequences: 8402
Number of extensions: 66275
Number of successful extensions: 6581
Number of sequences better than 10.0: 989
length of query: 1507
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1491
effective length of database: 7,941,110
effective search space: 11840195010
effective search space used: 11840195010
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 2. 4
Homology vs DNA 
Query= Contig-U15651-1 (Contig-U15651-1Q) /CSM_Contig/Contig-U15651-1Q.Seq.d
         (1507 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY392439) Dictyostelium discoideum P-selectin gene, complet...  1742   0.0    1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...  1742   0.0    1
(BJ376004) Dictyostelium discoideum cDNA clone:ddc20g20, 3' ...  1179   0.0    1
(BJ341005) Dictyostelium discoideum cDNA clone:dda4b24, 3' e...  1102   0.0    1
(BJ346803) Dictyostelium discoideum cDNA clone:dda25i02, 3' ...  1076   0.0    1
(BJ374930) Dictyostelium discoideum cDNA clone:ddc16g21, 3' ...  1049   0.0    1
(BJ376382) Dictyostelium discoideum cDNA clone:ddc28e12, 3' ...  1027   0.0    1
(AU073341) Dictyostelium discoideum slug cDNA, clone SSG726.      476   e-129  1
(BJ343372) Dictyostelium discoideum cDNA clone:dda22j20, 3' ...   313   1e-80  1
(AC116955) Dictyostelium discoideum chromosome 2 map 5455881...    62   2e-16  9
(AY392438) Dictyostelium discoideum tenascin X gene, complet...    50   8e-13  5
(BJ387113) Dictyostelium discoideum cDNA clone:dds12m07, 5' ...    50   5e-10  3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   2e-04  12
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.003  14
(AL034559) Plasmodium falciparum MAL3P7.                           36   0.003  13
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.005  18
(AY392443) Dictyostelium discoideum possible endotoxin gene,...    40   0.006  4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.007  20
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   0.009  18
(L06178) Apis mellifera ligustica complete mitochondrial gen...    38   0.017  6
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.048  17
(EJ187883) 1092344165889 Global-Ocean-Sampling_GS-27-01-01-1...    42   0.074  3
(ET747273) CHO_OF284xh02f1.ab1 CHO_OF Nicotiana tabacum geno...    32   0.086  4
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    40   0.10   21
(ER463769) 1092963910950 Global-Ocean-Sampling_GS-35-01-01-1...    40   0.11   2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.16   21
(AM644059) Entamoeba moshkovskii FIC GSS, clone mosh005f10.p1k.    34   0.22   3
(BJ327572) Dictyostelium discoideum cDNA clone:dda20n22, 5' ...    38   0.27   2
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    34   0.29   8
(ER609687) 1093016300555 Global-Ocean-Sampling_GS-36-01-01-2...    42   0.34   2
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        36   0.36   14
(AC061986) Homo sapiens chromosome 18 clone RP11-783N9 map 1...    34   0.42   11
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    36   0.46   6
(AC196759) Citrus sinensis clone CSRBBa-038H19, WORKING DRAF...    40   0.49   2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.50   17
(CK573261) 1290 Plasmodium yoelii liver stage LCM cDNA libra...    36   0.71   2
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      38   0.72   19
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    32   0.82   12
(CJ449133) Macaca fascicularis mRNA, clone: QflA-14637, 5' e...    32   0.95   3
(AE001430) Plasmodium falciparum 3D7 chromosome 2 section 67...    44   1.1    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    30   1.1    16
(CK573228) 1258 Plasmodium yoelii liver stage LCM cDNA libra...    36   1.3    2
(BM159408) EST561931 PyBS Plasmodium yoelii yoelii cDNA clon...    36   1.3    2
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    32   1.4    12
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   1.4    22
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   1.5    16
(AQ995661) RPCI-23-338B16.TJ RPCI-23 Mus musculus genomic cl...    42   1.7    2
(BJ360558) Dictyostelium discoideum cDNA clone:ddc6p17, 5' e...    36   1.8    3
(DX822866) GH_MBb0020E09r GH_MBb Gossypium hirsutum genomic ...    44   1.9    2
(CU570869) M.truncatula DNA sequence from clone MTH2-93A20 o...    38   1.9    7
(BJ416849) Dictyostelium discoideum cDNA clone:ddv27d14, 5' ...    32   2.3    3
(AM462952) Vitis vinifera contig VV79X001842.3, whole genome...    36   2.4    3
(AY673996) Gracilaria tenuistipitata var. liui chloroplast, ...    36   2.5    11
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    40   2.6    6
(AC084341) Homo sapiens chromosome 8, clone RP11-760J15, com...    36   2.9    6
(FP016160) Medicago truncatula chromosome 5 clone mte1-16b3,...    38   2.9    4
(EK151622) 1095456054887 Global-Ocean-Sampling_GS-31-01-01-1...    34   3.0    3
(ES272079) JKBNM5_T7_015_D08_30JUN2004_058 JKBNM5 Brassica n...    38   3.2    2
(FH752481) OSB_1158003xn21f1.ab1 OSB_1158 Nicotiana tabacum ...    32   3.2    3
(FH751820) OSB_1158004xk06f1.ab1 OSB_1158 Nicotiana tabacum ...    32   3.4    3
(CI018153) Oryza sativa Japonica Group cDNA, clone: 007-M038...    40   3.4    2
(FH752055) OSB_1158004xd20f1.ab1 OSB_1158 Nicotiana tabacum ...    32   3.4    3
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   3.5    11
(AZ679369) ENTIO17TR Entamoeba histolytica Sheared DNA Entam...    32   3.5    3
(BJ328891) Dictyostelium discoideum cDNA clone:dda30a04, 5' ...    38   3.5    2
(BM716798) UI-E-EJ0-ahl-a-01-0-UI.r2 UI-E-EJ0 Homo sapiens c...    38   3.8    2
(DQ108132) Aetomylaeus maculatus voucher BW-A272 cytochrome ...    46   3.8    1
(DQ108131) Aetomylaeus maculatus voucher BW-A271 cytochrome ...    46   3.8    1
(AL928980) Zebrafish DNA sequence from clone DKEY-77M16 in l...    46   3.8    1
(AC187570) Gallus gallus BAC clone CH261-189F16 from chromos...    46   3.8    1
(AC187511) Gallus gallus BAC clone CH261-92F23 from chromoso...    46   3.8    1
(AC110559) Mus musculus chromosome 7, clone RP23-253E12, com...    46   3.8    1
(AC110541) Mus musculus chromosome 7, clone RP23-105F19, com...    46   3.8    1
(AC146624) Otolemur garnettii clone CH256-541E23, WORKING DR...    46   3.8    1
(CU986300) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.8    1
(CU929323) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.8    1
(CT955993) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.8    1
(AC206698) Zea mays chromosome 8 clone CH201-113J4; ZMMBBc01...    46   3.8    1
(AC205316) Zea mays chromosome 8 clone CH201-501O16; ZMMBBc0...    46   3.8    1
(AC204422) Zea mays chromosome 4 clone CH201-245P18; ZMMBBc0...    46   3.8    1
(AC195988) Zea mays chromosome UNKNOWN clone CH201-542J3; ZM...    46   3.8    1
(AC171482) Bos taurus clone CH240-271N24, WORKING DRAFT SEQU...    46   3.8    1
(CZ353042) ZMMBF0090I07f ZMMBF Zea mays genomic clone ZMMBF0...    46   3.8    1
(CR187459) Reverse strand read from insert in 5'HPRT inserti...    46   3.8    1
(CC220974) CH261-135L19_RM1.1 CH261 Gallus gallus genomic cl...    46   3.8    1
(BZ976816) PUGGW88TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   3.8    1
(BZ976813) PUGGW88TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   3.8    1
(BZ826026) PUGFF23TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   3.8    1
(CP000083) Colwellia psychrerythraea 34H, complete genome.         46   3.8    1
(EW762421) ST040012B10B08 Normalized and subtracted western ...    38   3.8    2
(BJ416412) Dictyostelium discoideum cDNA clone:ddv26i10, 5' ...    36   3.9    2
(CR759892) Zebrafish DNA sequence from clone DKEY-248G15 in ...    36   4.0    4
(DB840909) Nilaparvata lugens mRNA, EST clone:NLTH9428, 5' e...    38   4.0    2
(CR759764) Zebrafish DNA sequence from clone DKEY-230I11 in ...    40   4.1    6
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    32   4.2    12
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    38   4.2    9
(FI089806) CHO_OF8218xb01r1.ab1 CHO_OF8 Nicotiana tabacum ge...    36   4.2    2
(EJ749851) 1092963027305 Global-Ocean-Sampling_GS-30-02-01-1...    32   4.3    4
(EJ476284) 1095403444656 Global-Ocean-Sampling_GS-28-01-01-1...    36   4.3    2
(CJ465057) Macaca fascicularis mRNA, clone: QnpA-14030, 5' e...    36   4.4    2
(CJ482285) Macaca fascicularis mRNA, clone: QtrA-18159, 5' e...    38   4.6    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   4.6    13
(DB837759) Nilaparvata lugens mRNA, EST clone:NLTH2007, 5' e...    38   4.7    2
(FH449623) CHO_OF4714xm17r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   4.7    2
(BJ423599) Dictyostelium discoideum cDNA clone:ddv49c24, 5' ...    36   4.9    2
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    28   4.9    10
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   5.0    11
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    36   5.1    9
(DX031318) KBrB028B14R KBrB, Brassica rapa BamHI BAC library...    36   5.1    2
(BX559850) Glossina morsitans morsitans (Tseatse fly) EST fr...    32   5.6    3
(AC229727) Medicago truncatula clone mth2-12e18, WORKING DRA...    38   5.7    5
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g...    32   6.0    2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    36   6.1    11
(AC180544) Strongylocentrotus purpuratus clone R3-3016J06, W...    38   6.7    6
(BJ416281) Dictyostelium discoideum cDNA clone:ddv25j18, 5' ...    32   6.8    3
(AC097065) Homo sapiens chromosome 1 clone RP11-532L16, comp...    32   7.0    2
(AC212646) Solanum lycopersicum chromosome 7 clone C07SLe011...    38   7.4    6
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    30   7.6    17
(AY365142) Erebia palarica haplotype EP6CR mitochondrial con...    34   7.9    2
(AY350484) Erebia palarica haplotype EP5 mitochondrial D-loo...    34   7.9    2
(AY350480) Erebia palarica haplotype EP1 mitochondrial D-loo...    34   7.9    2
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    32   7.9    11
(AY480019) Erebia palarica haplotype XIIICR D-loop, partial ...    34   7.9    2
(AY480018) Erebia palarica haplotype XICR D-loop, partial se...    34   7.9    2
(AY480016) Erebia palarica haplotype IX D-loop, partial sequ...    34   7.9    2
(AY480015) Erebia palarica haplotype VI D-loop, partial sequ...    34   7.9    2
(AY350483) Erebia palarica haplotype EP4 mitochondrial D-loo...    34   7.9    2
(AY350482) Erebia palarica haplotype EP3 mitochondrial D-loo...    34   7.9    2
(AY350481) Erebia palarica haplotype EP2 mitochondrial D-loo...    34   7.9    2
(AY480017) Erebia palarica haplotype XCR D-loop, partial seq...    34   8.0    2
(AC111388) Rattus norvegicus clone CH230-142K3, *** SEQUENCI...    34   8.2    9
(AM456139) Vitis vinifera, whole genome shotgun sequence, co...    34   8.3    5
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   8.5    12
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    36   8.5    11
(X17191) E.gracilis chloroplast RNA polymerase rpoB-rpoC1-rp...    36   8.9    4
(BM463348) AGENCOURT_6433562 NIH_MGC_92 Homo sapiens cDNA cl...    32   9.4    2
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    34   9.5    7
(C25565) Dictyostelium discoideum slug cDNA, clone SLA429.         34   9.6    2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   9.6    11
(EA731933) Sequence 278 from patent US 7368527.                    38   9.7    2
(BD249213) 48 human secreted proteins.                             38   9.7    2
(BJ374789) Dictyostelium discoideum cDNA clone:ddc16e08, 3' ...    34   9.7    2
(DQ219488) Mycoplasma putrefaciens strain ATCC 33756 RNA pol...    36   9.8    2

>(AY392439) Dictyostelium discoideum P-selectin gene, complete cds.
          Length = 5251

 Score = 1742 bits (879), Expect = 0.0
 Identities = 879/879 (100%)
 Strand = Plus / Plus


Query: 629  taatatcaatggtgaaattgaaagtggtgcaggatcattcaaactttattcattctatga 688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 taatatcaatggtgaaattgaaagtggtgcaggatcattcaaactttattcattctatga 2271


Query: 689  ttatttaccccaatcaaattattattatgtattaatgaatcaaggtggatcagcaccaat 748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 ttatttaccccaatcaaattattattatgtattaatgaatcaaggtggatcagcaccaat 2331


Query: 749  tttctcacttatagatgcaaataatggtggtgataaagttaaatatgttttcaatatttt 808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 tttctcacttatagatgcaaataatggtggtgataaagttaaatatgttttcaatatttt 2391


Query: 809  caatacaccattcgttccaatttttgatgatattgaaaaatcaatgatctatggtgctta 868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 caatacaccattcgttccaatttttgatgatattgaaaaatcaatgatctatggtgctta 2451


Query: 869  tggtatttataaattaaataaattaccaacacaaagaagtgatgctcaagatgcaacatt 928
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 tggtatttataaattaaataaattaccaacacaaagaagtgatgctcaagatgcaacatt 2511


Query: 929  aatttatcaatcacaaattgttaatggtttagcaaaagatggtaatgatttatatatgtc 988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2512 aatttatcaatcacaaattgttaatggtttagcaaaagatggtaatgatttatatatgtc 2571


Query: 989  aacttatgatggtaaattcttaaaaggtaaagctgattgttcaaattgtacaaaagatca 1048
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2572 aacttatgatggtaaattcttaaaaggtaaagctgattgttcaaattgtacaaaagatca 2631


Query: 1049 attgattgaaattggtagtgatactgatgcaagtcatttaactgatttcttagtcgaggg 1108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2632 attgattgaaattggtagtgatactgatgcaagtcatttaactgatttcttagtcgaggg 2691


Query: 1109 tgatttaattgtattctctcattcaaatggtataactgcttattcaaaatctgctaactc 1168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2692 tgatttaattgtattctctcattcaaatggtataactgcttattcaaaatctgctaactc 2751


Query: 1169 taatcaagccattaaattaatcactggtgaaaatgtaatttcaatggtttcaaagggtgg 1228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2752 taatcaagccattaaattaatcactggtgaaaatgtaatttcaatggtttcaaagggtgg 2811


Query: 1229 tgtcatttattatacaactaaagatggtattgttaaatcaattggtattgatggtaaaaa 1288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2812 tgtcatttattatacaactaaagatggtattgttaaatcaattggtattgatggtaaaaa 2871


Query: 1289 tggtaaaactatttatacaccaacttccaatcatcaatgtcaagctgctgttggtttcca 1348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2872 tggtaaaactatttatacaccaacttccaatcatcaatgtcaagctgctgttggtttcca 2931


Query: 1349 atcaattgatggtgtttgtaaaggtaaaaccttatggtataatggtattccaacttgtac 1408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2932 atcaattgatggtgtttgtaaaggtaaaaccttatggtataatggtattccaacttgtac 2991


Query: 1409 tccattaggtgaaggtggtatccctgctcaatgtttcacaagtgttgattgtggtccaac 1468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2992 tccattaggtgaaggtggtatccctgctcaatgtttcacaagtgttgattgtggtccaac 3051


Query: 1469 tccatatttcacttgtaatggtacttgtggatgtgttaa 1507
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 3052 tccatatttcacttgtaatggtacttgtggatgtgttaa 3090

 Score =  991 bits (500), Expect = 0.0
 Identities = 500/500 (100%)
 Strand = Plus / Plus


Query: 129  taatatcaatggtgaaattgaaagtggtgcaggatcattcaaactttattcattctatga 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 taatatcaatggtgaaattgaaagtggtgcaggatcattcaaactttattcattctatga 2271


Query: 189  ttatttaccccaatcaaattattattatgtattaatgaatcaaggtggatcagcaccaat 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 ttatttaccccaatcaaattattattatgtattaatgaatcaaggtggatcagcaccaat 2331


Query: 249  tttctcacttatagatgcaaataatggtggtgataaagttaaatatgttttcaatatttt 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 tttctcacttatagatgcaaataatggtggtgataaagttaaatatgttttcaatatttt 2391


Query: 309  caatacaccattcgttccaatttttgatgatattgaaaaatcaatgatctatggtgctta 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 caatacaccattcgttccaatttttgatgatattgaaaaatcaatgatctatggtgctta 2451


Query: 369  tggtatttataaattaaataaattaccaacacaaagaagtgatgctcaagatgcaacatt 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 tggtatttataaattaaataaattaccaacacaaagaagtgatgctcaagatgcaacatt 2511


Query: 429  aatttatcaatcacaaattgttaatggtttagcaaaagatggtaatgatttatatatgtc 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2512 aatttatcaatcacaaattgttaatggtttagcaaaagatggtaatgatttatatatgtc 2571


Query: 489  aacttatgatggtaaattcttaaaaggtaaagctgattgttcaaattgtacaaaagatca 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2572 aacttatgatggtaaattcttaaaaggtaaagctgattgttcaaattgtacaaaagatca 2631


Query: 549  attgattgaaattggtagtgatactgatgcaagtcatttaactgatttcttagtcgaggg 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2632 attgattgaaattggtagtgatactgatgcaagtcatttaactgatttcttagtcgaggg 2691


Query: 609  tgatttaattgtattctctc 628
            ||||||||||||||||||||
Sbjct: 2692 tgatttaattgtattctctc 2711

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,834,840,090
Number of extensions: 120531696
Number of successful extensions: 10260005
Number of sequences better than 10.0: 145
Length of query: 1507
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1483
Effective length of database: 96,409,374,237
Effective search space: 142975101993471
Effective search space used: 142975101993471
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U15651-1 (Contig-U15651-1Q) /CSM_Contig/Contig-U15651-1Q.Seq.d
         (1507 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin ...   273   2e-71
AC116955_5(AC116955|pid:none) Dictyostelium discoideum chromosom...   196   1e-48
AY283928_297(AY283928|pid:none) Bacteriophage KVP40, complete ge...    42   0.077
CP001032_1387(CP001032|pid:none) Opitutus terrae PB90-1, complet...    39   0.38
AY091010_1(AY091010|pid:none) Arabidopsis thaliana putative S-re...    39   0.65
AL021811_6(AL021811|pid:none) Arabidopsis thaliana DNA chromosom...    39   0.65
AE017332_461(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co...    37   1.4
CP000444_1469(CP000444|pid:none) Shewanella sp. MR-7, complete g...    36   3.2
AY337469_1(AY337469|pid:none) Escherichia coli strain 87 flagell...    35   5.5
BC090242_1(BC090242|pid:none) Xenopus laevis hypothetical protei...    35   5.5
A81591(A81591) polymorphic membrane protein G family CP0307 [imp...    35   7.2
AE001437_1016(AE001437|pid:none) Clostridium acetobutylicum ATCC...    35   7.2
CP000077_1004(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6...    35   9.4
CP000422_936(CP000422|pid:none) Pediococcus pentosaceus ATCC 257...    35   9.4
CP001077_256(CP001077|pid:none) Rhizobium etli CIAT 652 plasmid ...    35   9.4

>AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin X
            gene, complete cds.
          Length = 426

 Score =  273 bits (697), Expect = 2e-71
 Identities = 147/305 (48%), Positives = 195/305 (63%), Gaps = 13/305 (4%)
 Frame = +3

Query: 630  NINGEIESGAGSFKLYSFYDYLPQSNYYYVLMNQGGSAPIFSLIDANNGGDKVKYVFNIF 809
            +I GEI  G G   L  FY YLPQ + YYV  NQ GS PIFS+   N   +++K VFNIF
Sbjct: 93   DIQGEILDGPGYTALDYFYKYLPQLDRYYVRFNQRGS-PIFSIY--NQTSNEIKAVFNIF 149

Query: 810  NTPFVPIFDDIEKS--MIYGAYGIYKLNKLPTQRSDAQDATLIYQSQIVNGLAKDGNDLY 983
            NTPFVP F   E +   +YG YGIY L K PT RSDAQ A LIYQSQIVNGL  DG+ LY
Sbjct: 150  NTPFVPAFSQNESAPFFVYGGYGIYGLAKYPTDRSDAQQAKLIYQSQIVNGLEIDGDQLY 209

Query: 984  MSTYDGKFLKGKADCSNCTKDQLIEIGSDTD---ASHLTDFLVEGDLIVFSHSNGITAYS 1154
            M+TY G+FLKG  +C NCTKDQL  + +D++   A+ ++ F +  D + FS+S GI  Y
Sbjct: 210  MTTYQGQFLKGSLNCLNCTKDQLQLLVTDSELASATSVSGFALTSDYMYFSYSGGIKGYP 269

Query: 1155 KSANSNQAIKLITGENVISMVSKGGVIYYTTKDGIVKSIGIDGKNGKT--IYTPTSNHQC 1328
            K+ ++++  KL++ ENV++M+S G  +YY T  G+VKS+   G + +   +YTP S++QC
Sbjct: 270  KNGDASRVRKLVS-ENVVAMISNGDFLYYQTDSGVVKSVSTSGNHPQVNILYTPVSDNQC 328

Query: 1329 QAAVGFQSIDGVCK----GKTLWY--NGIPTCTPLGEGGIPAQCFTSVDCGPTPYFTCNG 1490
            Q +VGF   D  C+    G  LW   NGIP C+PL   G P  C+ +  CG +P+  CNG
Sbjct: 329  QCSVGFSGDD--CRQCDNGMVLWASDNGIPMCSPLNSLGKPKTCYAAYQCGSSPFIICNG 386

Query: 1491 TCGCV 1505
            TC C+
Sbjct: 387  TCTCL 391

 Score =  166 bits (419), Expect = 3e-39
 Identities = 93/177 (52%), Positives = 115/177 (64%), Gaps = 5/177 (2%)
 Frame = +1

Query: 130 NINGEIESGAGSFKLYSFYDYLPQSNYYYVLMNQGGSAPIFSLIDANNGGDKVKYVFNIF 309
           +I GEI  G G   L  FY YLPQ + YYV  NQ GS PIFS+   N   +++K VFNIF
Sbjct: 93  DIQGEILDGPGYTALDYFYKYLPQLDRYYVRFNQRGS-PIFSIY--NQTSNEIKAVFNIF 149

Query: 310 NTPFVPIFDDIEKS--MIYGAYGIYKLNKLPTQRSDAQDATLIYQSQIVNGLAKDGNDLY 483
           NTPFVP F   E +   +YG YGIY L K PT RSDAQ A LIYQSQIVNGL  DG+ LY
Sbjct: 150 NTPFVPAFSQNESAPFFVYGGYGIYGLAKYPTDRSDAQQAKLIYQSQIVNGLEIDGDQLY 209

Query: 484 MSTYDGKFLKGKADCSNCTKDQLIEIGSDTD---ASHLTDFLVEGDLIVFSLISMVK 645
           M+TY G+FLKG  +C NCTKDQL  + +D++   A+ ++ F +  D + FS    +K
Sbjct: 210 MTTYQGQFLKGSLNCLNCTKDQLQLLVTDSELASATSVSGFALTSDYMYFSYSGGIK 266

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,126,129,570
Number of extensions: 44331705
Number of successful extensions: 122077
Number of sequences better than 10.0: 15
Number of HSP's gapped: 121947
Number of HSP's successfully gapped: 19
Length of query: 502
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 369
Effective length of database: 620,718,517
Effective search space: 229045132773
Effective search space used: 229045132773
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.95  gvh: 0.49  alm: 0.22  top: 1.00  tms: 0.07  mit: 0.27  mip: 0.06
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15651-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 3
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0