Contig-U00723-1
Contig ID Contig-U00723-1
Contig update 2001. 8.29
Contig sequence
>Contig-U00723-1 (Contig-U00723-1Q) /CSM_Contig/Contig-U00723-1Q.Seq.d
TGNTTTAAAGGAACAATTTGGAAAAGNTTTAGCTNGGNTTGGNAANTTAA
AANAANAAGGTTNNCAAATTTTANANAAAATTAGACAATTAATGGAGGGG
GNTNGGGTCCANGGNGANATTTCAACATCANAAAGNGAAAANAGGNTAAG
ACAAAAACCANAAGGGACATTTTTAGGGGGNTTCNCAANAAGNGAAAANG
GGGNNNACNCAATTTCTAAAGNTAGNAANAANGGGGGGATTTCACATCAA
ANAATTCCCAGACCNCAAGGGAAANTCCAAGGCANCAANAGNAAAAATCT
TAGGGGAAAAGAATTAATTACNGGNGAGGNNCAAGCNTTAGGAATTAAAA
CCCCANGGTTAGGGNCAAGATTTTTANCTTTGATTNACAAG

Gap no gap
Contig length 391
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U00723
List of clone(s)

est1=CFB221Z,1,392
Translated Amino Acid sequence
XLKEQFGKXLAXXGXLKXXGXQILXKIRQLMEGXXVXGXISTSXXEXRXRQKPXGTFLGG
FXXXEXGXXXISKXXXXGGISHQXIPRPQGKXQGXXXKNLRGKELITGEXQALGIKTPXL
GXRFLXLIXK


Translated Amino Acid sequence (All Frames)
Frame A:
xfkgtiwkxfsxxwxxkxxrxxnfxxn*tingggxgpxxxfnixkxkxxktktxrdifrg
xxxkxkxgxxnf*x*xxxgdftsxnsqtxrexprxqxxks*gkrinyxxgxsxrn*npxv
rxkifxfdxq


Frame B:
XLKEQFGKXLAXXGXLKXXGXQILXKIRQLMEGXXVXGXISTSXXEXRXRQKPXGTFLGG
FXXXEXGXXXISKXXXXGGISHQXIPRPQGKXQGXXXKNLRGKELITGEXQALGIKTPXL
GXRFLXLIXK


Frame C:
x*rnnlekx*lglxx*xxkvxkfxxkldn*wrgxgsxxxfqhxkxkxg*dknxkghf*gx
sqxxkxgxtqflkxxxxggfhikxfpdxkgxskaxxxkilgekn*lxxrxkx*elkpxg*
gqdfxl*xt


own update 2004. 6.21
Homology vs CSM-cDNA
Query= Contig-U00723-1 (Contig-U00723-1Q)
/CSM_Contig/Contig-U00723-1Q.Seq.d
(391 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U00723-1 (Contig-U00723-1Q) /CSM_Contig/Conti... 442 e-124
Contig-U10843-1 (Contig-U10843-1Q) /CSM_Contig/Conti... 250 1e-66
Contig-U14910-1 (Contig-U14910-1Q) /CSM_Contig/Conti... 52 6e-07
Contig-U12346-1 (Contig-U12346-1Q) /CSM_Contig/Conti... 30 2.4
Contig-U10142-1 (Contig-U10142-1Q) /CSM_Contig/Conti... 30 2.4
Contig-U07842-1 (Contig-U07842-1Q) /CSM_Contig/Conti... 30 2.4
Contig-U06106-1 (Contig-U06106-1Q) /CSM_Contig/Conti... 30 2.4
Contig-U05881-1 (Contig-U05881-1Q) /CSM_Contig/Conti... 30 2.4
Contig-U01361-1 (Contig-U01361-1Q) /CSM_Contig/Conti... 30 2.4

>Contig-U00723-1 (Contig-U00723-1Q) /CSM_Contig/Contig-U00723-1Q.Seq.d
Length = 391

Score = 442 bits (223), Expect = e-124
Identities = 382/388 (98%)
Strand = Plus / Plus


Query: 4 tttaaaggaacaatttggaaaagntttagctnggnttggnaanttaaaanaanaaggttn 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tttaaaggaacaatttggaaaagntttagctnggnttggnaanttaaaanaanaaggttn 63


Query: 64 ncaaattttananaaaattagacaattaatggagggggntngggtccanggnganatttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ncaaattttananaaaattagacaattaatggagggggntngggtccanggnganatttc 123


Query: 124 aacatcanaaagngaaaanaggntaagacaaaaaccanaagggacatttttagggggntt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aacatcanaaagngaaaanaggntaagacaaaaaccanaagggacatttttagggggntt 183


Query: 184 cncaanaagngaaaanggggnnnacncaatttctaaagntagnaanaannnnnnnatttc 243
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 184 cncaanaagngaaaanggggnnnacncaatttctaaagntagnaanaanggggggatttc 243


Query: 244 acatcaaanaattcccagaccncaagggaaantccaaggcancaanagnaaaaatcttag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acatcaaanaattcccagaccncaagggaaantccaaggcancaanagnaaaaatcttag 303


Query: 304 gggaaaagaattaattacnggngaggnncaagcnttaggaattaaaaccccanggttagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggaaaagaattaattacnggngaggnncaagcnttaggaattaaaaccccanggttagg 363


Query: 364 gncaagatttttanctttgattnacaag 391
||||||||||||||||||||||||||||
Sbjct: 364 gncaagatttttanctttgattnacaag 391


>Contig-U10843-1 (Contig-U10843-1Q) /CSM_Contig/Contig-U10843-1Q.Seq.d
Length = 1281

Score = 250 bits (126), Expect = 1e-66
Identities = 291/364 (79%)
Strand = Plus / Plus


Query: 28 tttagctnggnttggnaanttaaaanaanaaggttnncaaattttananaaaattagaca 87
||||||| || |||| || |||||| || | |||| ||||||||| | |||||||||||
Sbjct: 688 tttagcttggtttggtaatttaaaagaagatggttctcaaattttagataaaattagaca 747


Query: 88 attaatggagggggntngggtccanggnganatttcaacatcanaaagngaaaanaggnt 147
|||||||||| | | | || |||| || || |||||||||||| |||| ||||| ||| |
Sbjct: 748 attaatggagtgcgcttggttccatggtgatatttcaacatcagaaagtgaaaataggtt 807


Query: 148 aagacaaaaaccanaagggacatttttagggggnttcncaanaagngaaaanggggnnna 207
||||||||||||| |||| |||||||||| | | ||| ||| ||| ||| | || | |
Sbjct: 808 aagacaaaaaccagaaggtacatttttagtgcgtttctcaacaagtgaatatggtgctta 867


Query: 208 cncaatttctaaagntagnaanaannnnnnnatttcacatcaaanaattcccagaccnca 267
| |||||||||||| ||| || || ||||||||||||| ||||| |||||| ||
Sbjct: 868 cacaatttctaaagttagtaagaatggtggtatttcacatcaaagaattcacagaccaca 927


Query: 268 agggaaantccaaggcancaanagnaaaaatcttaggggaaaagaattaattacnggnga 327
||| ||| |||||| || ||| || ||| ||||||| | ||||||||||||||| || ||
Sbjct: 928 aggtaaattccaagtcaacaatagtaaatatcttagcgtaaaagaattaattactggtga 987


Query: 328 ggnncaagcnttaggaattaaaaccccanggttagggncaagatttttanctttgattna 387
|| ||||| ||||||||||| || ||| | ||||| ||||||||||| |||||||| |
Sbjct: 988 ggcacaagctttaggaattaatactccatgtttaggttcaagatttttatctttgattta 1047


Query: 388 caag 391
||||
Sbjct: 1048 caag 1051


>Contig-U14910-1 (Contig-U14910-1Q) /CSM_Contig/Contig-U14910-1Q.Seq.d
Length = 1000

Score = 52.0 bits (26), Expect = 6e-07
Identities = 42/49 (85%)
Strand = Plus / Plus


Query: 4 tttaaaggaacaatttggaaaagntttagctnggnttggnaanttaaaa 52
||||| |||||||||||| |||| ||||||| || |||| || ||||||
Sbjct: 943 tttaatggaacaatttggtaaagttttagcttggtttggtaatttaaaa 991


Score = 52.0 bits (26), Expect = 6e-07
Identities = 42/49 (85%)
Strand = Plus / Plus


Query: 4 tttaaaggaacaatttggaaaagntttagctnggnttggnaanttaaaa 52
||||| |||||||||||| |||| ||||||| || |||| || ||||||
Sbjct: 443 tttaatggaacaatttggtaaagttttagcttggtttggtaatttaaaa 491


Database: CSM
Posted date: Jun 21, 2004 12:56 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1445
Number of Sequences: 8402
Number of extensions: 1445
Number of successful extensions: 99
Number of sequences better than 10.0: 27
length of query: 391
length of database: 8,075,542
effective HSP length: 16
effective length of query: 375
effective length of database: 7,941,110
effective search space: 2977916250
effective search space used: 2977916250
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 4.19
Homology vs DNA
Query= Contig-U00723-1 (Contig-U00723-1Q) /CSM_Contig/Contig-U00723-1Q.Seq.d
(391 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ373446) Dictyostelium discoideum cDNA clone:ddc3i06, 3' e... 214 e-107 3
(AJ297966) Dictyostelium discoideum mRNA for SHK1 protein. 127 1e-63 4
(C94309) Dictyostelium discoideum slug cDNA, clone SSK770. 135 1e-59 4
(BJ428178) Dictyostelium discoideum cDNA clone:ddv11c03, 3' ... 121 2e-23 1
(BJ339723) Dictyostelium discoideum cDNA clone:dda10l06, 3' ... 86 1e-12 1
(AP000640) Homo sapiens genomic DNA, chromosome 11 clone:CMB... 44 3.9 1
(AP000442) Homo sapiens genomic DNA, chromosome 11q, clone:C... 44 3.9 1

>(BJ373446) Dictyostelium discoideum cDNA clone:ddc3i06, 3' end,
single read.
Length = 392

Score = 214 bits (108), Expect(3) = e-107
Identities = 153/153 (100%)
Strand = Plus / Minus


Query: 239 atttcacatcaaanaattcccagaccncaagggaaantccaaggcancaanagnaaaaat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atttcacatcaaanaattcccagaccncaagggaaantccaaggcancaanagnaaaaat 95


Query: 299 cttaggggaaaagaattaattacnggngaggnncaagcnttaggaattaaaaccccangg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cttaggggaaaagaattaattacnggngaggnncaagcnttaggaattaaaaccccangg 35


Query: 359 ttagggncaagatttttanctttgattnacaag 391
|||||||||||||||||||||||||||||||||
Sbjct: 34 ttagggncaagatttttanctttgattnacaag 2

Score = 119 bits (60), Expect(3) = e-107
Identities = 93/93 (100%)
Strand = Plus / Minus


Query: 4 tttaaaggaacaatttggaaaagntttagctnggnttggnaanttaaaanaanaaggttn 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttaaaggaacaatttggaaaagntttagctnggnttggnaanttaaaanaanaaggttn 330


Query: 64 ncaaattttananaaaattagacaattaatgga 96
|||||||||||||||||||||||||||||||||
Sbjct: 329 ncaaattttananaaaattagacaattaatgga 297

Score = 105 bits (53), Expect(3) = e-107
Identities = 80/80 (100%)
Strand = Plus / Minus


Query: 119 atttcaacatcanaaagngaaaanaggntaagacaaaaaccanaagggacatttttaggg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atttcaacatcanaaagngaaaanaggntaagacaaaaaccanaagggacatttttaggg 215


Query: 179 ggnttcncaanaagngaaaa 198
||||||||||||||||||||
Sbjct: 214 ggnttcncaanaagngaaaa 195

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 187,044,948
Number of extensions: 10235669
Number of successful extensions: 469219
Number of sequences better than 10.0: 7
Length of query: 391
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 368
Effective length of database: 99,442,330,388
Effective search space: 36594777582784
Effective search space used: 36594777582784
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U00723-1 (Contig-U00723-1Q) /CSM_Contig/Contig-U00723-1Q.Seq.d
(391 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54RB7) RecName: Full=Dual specificity protein kinase shkA; ... 135 6e-31
(Q54Y55) RecName: Full=Dual specificity protein kinase shkC; ... 42 0.005

>(Q54RB7) RecName: Full=Dual specificity protein kinase shkA;
EC=2.7.11.1; AltName: Full=SH2 domain-containing
protein A; AltName: Full=SH2 domain-containing protein
1;
Length = 527

Score = 135 bits (339), Expect = 6e-31
Identities = 80/129 (62%), Positives = 80/129 (62%)
Frame = +2

Query: 5 LKEQFGKXLAXXGXLKXXGXQILXKIRQLMEGXXVXGXISTSXXEXRXRQKPXGTFLGGF 184
L EQFGK LA G LK G QIL KIRQLME G ISTS E R RQKP GTFL F
Sbjct: 391 LMEQFGKVLAWFGNLKEDGSQILDKIRQLMECAWFHGDISTSESENRLRQKPEGTFLVRF 450

Query: 185 XXXEXGXXXISKXXXXGGISHQXIPRPQGKXQGXXXKNLRGKELITGEXQALGIKTPXLG 364
E G ISK GGISHQ I RPQGK Q K L KELITGE QALGI TP LG
Sbjct: 451 STSEYGAYTISKVSKNGGISHQRIHRPQGKFQVNNSKYLSVKELITGEAQALGINTPCLG 510

Query: 365 XRFLXLIXK 391
RFL LI K
Sbjct: 511 SRFLSLIYK 519

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 362,669,402
Number of extensions: 6847609
Number of successful extensions: 1377
Number of sequences better than 10.0: 2
Number of HSP's gapped: 1377
Number of HSP's successfully gapped: 2
Length of query: 130
Length of database: 1,051,180,864
Length adjustment: 95
Effective length of query: 35
Effective length of database: 743,707,759
Effective search space: 26029771565
Effective search space used: 26029771565
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.84 gvh: 0.49 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.17
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U00723-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0