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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15621-1
Contig ID Contig-U15621-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15621-1 (Contig-U15621-1Q) /CSM_Contig/Contig-U15621-1Q.Seq.d
ATAATAAAAAAAAAAAAAGTTTTATTTTTATTTTTTTATTTTAATTTTAT
TTTACCACAAATATAATCATTATTATAATTTCAATTTATTCATTAATTTA
TTTATTTATTTTTAAAAATAATATAATATAGTTTAATTATTATACTAAAA
AAAAAAAAAAAAACATTAGAAAAAAAAAAAAACAAAATAAAATAAATAAA
AAAAAAAATAAAAAAAAAAATG----------ATTTATCATTATTAATCA
TATTATTAATTATTAATTGTAATTATCAATTTGTAAAGCTGATGCAGAAT
CAAAAGCATTGGATATTATAAATAGATATCGTGATATTGCAAGATATACA
TTTTTTACAACTGATGGTCATCTTGAAAAATATCCATCAGGATTTTGTGG
TGGTACAACAATTGAAGATTGTAAATGGGATGAATATATTGAAGCAGTAA
TATTATTATCAGGAATTACCTTTATAATTGCAGCAATTACATTAATTTTT
GGTATAATATTTTGGATTTTTAGATGTCTTTGTTTTGGTGGTTGTAAACC
AACACATGGTATTCTTTGTCCAGGTCCAAAATATGACCCAGATATTGGTG
AAGGTTACTCAAAGGGTAGAGTTTTTATATTAAAATTGGTTACATTAATT
ATGGTTGCAGGTTGTGTTGCAGTTTTCATTACAAGTTTAAAGGGTAATTC
CTCTGTGACCTCTGGTATTAACAATTTGAGTGACACTGTTTTCAATAAAA
CCTCATACACTTTAGAACAATTGATTGAGATTAGTAATCAATTAAATGAG
ACTAAATATCAACAATTTGATCAAAAACAAGAGATTCAATCACAATTGAC
CCAATTGATTAGCGATGGTGAGGAACTCGAGAGTAAAGGCGAGGATATCA
GTTCCAACGCAAAGGATATAAATAATATTAGAACAAAGATCATTATCGTC
GGTTTAGTATTTTGCATGGTAGTGGCAGGCCTCATTGGTGTATCAGCACT
AATTGGTCTACCAAGAATTTCACGTGCAGCCTCTATCGCTTTGGTAATTT
TAATTCCATTCATGTGGATCGTTTTCTCTGTTCATTATCCAATCAATAGT
GTCGTTGCTGATATTTGTATAAGTTATGATACAACTGGTGTACAACAATT
ATCAAATTTTACAAATCCAATTATCGAACAGGTCTTTGAAGGCTGTCAAA
ATGACAATAATACCATCTCTGTTTTCGAGGATTTACAATCATTGGTTAAT
AATCTACTCCAGAATGCAACCGATACAAGTTGTGATAAAATCAATGACGC
TTGCCAATTGGCTTTCCCACGTTATCCTAATGATAACCCATTATCAGTAC
CATATCAACAAAATGTTTTAGATTGTCCACCAACTCTAACTTGTAGCAAT
ACAACATTAAGTATTTATTTATTCAATACTACTGTCCATGACTTTAATGT
TAAATGTAAGAATGCACCAACTTGTGGTGATTTATCAACTTGTGATCCAT
CCATTCTTACCGAAGTTATGTCTTGTGATTGGGTAGATGTTAGTTCTGTT
AATTCTTGCTCTCAAGGTGGTTGCCAATACAACCAACAAGTTGTAAATAC
TACAAAACAAATTATGCAACTTTATGATATCTTAACTTCACTCACTACTC
TTTGGACTGATAAAGTTGTACCATTAATTAAATGTTCATATCTTATGCCA
TTCATAGATGAAGTTCAAAATATTGTTTGCGTTGATGAAGTTAATTCTTT
AGATCTCTTAATAGCTCCAACTGCAGTGTTTGCCATTTTATTAACTGGAC
TTGGTATTACTGGTATCTTAGGAAGTAAGAGATTTAATTCCAAATACCGT
GTAAAGGGAAGTAGATCAGCTTAATTCCTTGATTATCAAGTTTTTAATAT
AATTATATATATATACAAAATCGACTGTTAAATATTTGAATAACTTAAAT
AAAGTTTATTTATTTTCTAAAATTAAAAAAAA
Gap gap included
Contig length 1972
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1113551
End point 1111563
Strand (PLUS/MINUS) MINUS
Number of clones 8
Number of EST 10
Link to clone list U15621
List of clone(s) 

est1=SSJ640F,1,222
est2=AFI885F,43,179
est3=SSJ640W,223,832
est4=SSF190F,311,1034
est5=SSA537F,516,1190
est6=AHQ437E,1093,1960
est7=SLE313E,1275,1966
est8=FC-IC0541E,1339,1659
est9=SSA537Z,1442,1972
est10=AFI885Z,1510,1890
Translated Amino Acid sequence 
nkkkksfififlf*fyfttniiiiiisiysliylfifknnii*FNYYTKKKKKNIRKKKK
QNKINKKKNKKKN---

---LSLLIILLIINCNYQFVKLMQNQKHWIL*idivilqdihflqlmvilknihqdfvvv
qqlkivngmnilkq*yyyqelpl*lqqlh*flv*yfgfldvfvlvvvnqhmvffvqvqnm
tqilvkvtqrvefly*nwlh*lwlqvvlqfslqv*rvipl*plvlti*vtlfsikphtl*
nn*lrlvin*mrlninnliknkrfnhn*pn*lamvrnsrvkarisvptqri*iileqrsl
ssv*yfaw*wqaslvyqh*lvyqefhvqplslw*f*fhscgsfslfiiqsivsllifv*v
miqlvynnyqilqiqlsnrslkavkmtiipslfsriynhwliiysrmqpiqvviksmtla
nwlshvilmithyqyhinkmf*ivhql*lvaiqh*vfiysillsmtlmlnvrmhqlvviy
qlvihpflpklclvig*mlvllilalkvvanttnkl*ilqnklcnfmis*lhsllfglik
lyh*lnvhilchs*mkfkilfalmklil*is**lqlqclpfy*ldlvllvs*evrdlipn
tv*revdqlnsliikfli*lyiytkstvkylnnlnkvylfskikk
Translated Amino Acid sequence (All Frames) 
Frame A:
iikkkkvlflffyfnfilpqi*sll*fqfih*fiylflkii*ysliiilkkkkktlekkk
nkik*ikkkikkkm---

---iyhy*syy*lliviinl*s*criksigyyk*is*yckiyifyn*wss*kisirilww
ynn*rl*mg*iy*ssniiirnylyncsnyinfwynildf*mslfwwl*tntwyslsrski
*pryw*rllkg*sfyikigyinygcrlccsfhykfkg*flcdlwy*qfe*hcfq*nlihf
rtid*d**sik*d*isti*sktrdsitidpid*rw*gtre*rrgyqfqrkgyk*y*nkdh
yrrfsilhgsgrphwcistnwstknftcslyrfgnfnsihvdrflcslsnq*crc*ylyk
l*ynwcttiikfyksnyrtgl*rlsk*q*yhlcfrgftiig**stpecnrykl**nq*rl
pigfptls***piististkcfrlstnsnl*qynikylfiqyycp*l*c*m*ectnlw*f
inl*sihsyrsyvl*lgrc*fc*fllsrwlpiqptsckyyktnyatl*ylnfthysld**
sctin*mfisyaihr*sskyclr**s*ffrslnssncsvchfinwtwyywylrk*ei*fq
ipckgk*islip*lssf*ynyiyiqnrllni*it*ikfiyflklkk

Frame B:
**kkkkfyfyffililfyhkynhyynfnlfinlfiyf*k*yniv*lly*kkkkkh*kkkk
tk*nk*kkk*kkk---

---fiiinhiiny*l*lsickadaeskaldiinryrdiarytffttdghlekypsgfcgg
ttiedckwdeyieavillsgitfiiaaitlifgiifwifrclcfggckpthgilcpgpky
dpdigegyskgrvfilklvtlimvagcvavfitslkgnssvtsginnlsdtvfnktsytl
eqlieisnqlnetkyqqfdqkqeiqsqltqlisdgeeleskgedissnakdinnirtkii
ivglvfcmvvagligvsaliglprisraasialvilipfmwivfsvhypinsvvadicis
ydttgvqqlsnftnpiieqvfegcqndnntisvfedlqslvnnllqnatdtscdkindac
qlafprypndnplsvpyqqnvldcpptltcsnttlsiylfnttvhdfnvkcknaptcgdl
stcdpsiltevmscdwvdvssvnscsqggcqynqqvvnttkqimqlydiltslttlwtdk
vvplikcsylmpfidevqnivcvdevnsldlliaptavfailltglgitgilgskrfnsk
yrvkgsrsa*fldyqvfniiiyiykidc*ife*lk*slfif*n*kk

Frame C:
nkkkksfififlf*fyfttniiiiiisiysliylfifknnii*FNYYTKKKKKNIRKKKK
QNKINKKKNKKKN---

---LSLLIILLIINCNYQFVKLMQNQKHWIL*idivilqdihflqlmvilknihqdfvvv
qqlkivngmnilkq*yyyqelpl*lqqlh*flv*yfgfldvfvlvvvnqhmvffvqvqnm
tqilvkvtqrvefly*nwlh*lwlqvvlqfslqv*rvipl*plvlti*vtlfsikphtl*
nn*lrlvin*mrlninnliknkrfnhn*pn*lamvrnsrvkarisvptqri*iileqrsl
ssv*yfaw*wqaslvyqh*lvyqefhvqplslw*f*fhscgsfslfiiqsivsllifv*v
miqlvynnyqilqiqlsnrslkavkmtiipslfsriynhwliiysrmqpiqvviksmtla
nwlshvilmithyqyhinkmf*ivhql*lvaiqh*vfiysillsmtlmlnvrmhqlvviy
qlvihpflpklclvig*mlvllilalkvvanttnkl*ilqnklcnfmis*lhsllfglik
lyh*lnvhilchs*mkfkilfalmklil*is**lqlqclpfy*ldlvllvs*evrdlipn
tv*revdqlnsliikfli*lyiytkstvkylnnlnkvylfskikk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15621-1 (Contig-U15621-1Q)
/CSM_Contig/Contig-U15621-1Q.Seq.d
         (1982 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15621-1 (Contig-U15621-1Q) /CSM_Contig/Conti...  3201  0.0
Contig-U13462-1 (Contig-U13462-1Q) /CSM_Contig/Conti...   180  5e-45
Contig-U16457-1 (Contig-U16457-1Q) /CSM_Contig/Conti...   103  1e-21
Contig-U16341-1 (Contig-U16341-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U14846-1 (Contig-U14846-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U10376-1 (Contig-U10376-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U16217-1 (Contig-U16217-1Q) /CSM_Contig/Conti...    36  0.20
Contig-U15748-1 (Contig-U15748-1Q) /CSM_Contig/Conti...    36  0.20
Contig-U13404-1 (Contig-U13404-1Q) /CSM_Contig/Conti...    36  0.20
Contig-U10688-1 (Contig-U10688-1Q) /CSM_Contig/Conti...    36  0.20

>Contig-U15621-1 (Contig-U15621-1Q) /CSM_Contig/Contig-U15621-1Q.Seq.d
          Length = 1982

 Score = 3202 bits (1615), Expect = 0.0
 Identities = 1615/1615 (100%)
 Strand = Plus / Plus

                                                                        
Query: 282  tgtaaagctgatgcagaatcaaaagcattggatattataaatagatatcgtgatattgca 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282  tgtaaagctgatgcagaatcaaaagcattggatattataaatagatatcgtgatattgca 341

                                                                        
Query: 342  agatatacattttttacaactgatggtcatcttgaaaaatatccatcaggattttgtggt 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342  agatatacattttttacaactgatggtcatcttgaaaaatatccatcaggattttgtggt 401

                                                                        
Query: 402  ggtacaacaattgaagattgtaaatgggatgaatatattgaagcagtaatattattatca 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402  ggtacaacaattgaagattgtaaatgggatgaatatattgaagcagtaatattattatca 461

                                                                        
Query: 462  ggaattacctttataattgcagcaattacattaatttttggtataatattttggattttt 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462  ggaattacctttataattgcagcaattacattaatttttggtataatattttggattttt 521

                                                                        
Query: 522  agatgtctttgttttggtggttgtaaaccaacacatggtattctttgtccaggtccaaaa 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522  agatgtctttgttttggtggttgtaaaccaacacatggtattctttgtccaggtccaaaa 581

                                                                        
Query: 582  tatgacccagatattggtgaaggttactcaaagggtagagtttttatattaaaattggtt 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  tatgacccagatattggtgaaggttactcaaagggtagagtttttatattaaaattggtt 641

                                                                        
Query: 642  acattaattatggttgcaggttgtgttgcagttttcattacaagtttaaagggtaattcc 701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  acattaattatggttgcaggttgtgttgcagttttcattacaagtttaaagggtaattcc 701

                                                                        
Query: 702  tctgtgacctctggtattaacaatttgagtgacactgttttcaataaaacctcatacact 761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  tctgtgacctctggtattaacaatttgagtgacactgttttcaataaaacctcatacact 761

                                                                        
Query: 762  ttagaacaattgattgagattagtaatcaattaaatgagactaaatatcaacaatttgat 821
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  ttagaacaattgattgagattagtaatcaattaaatgagactaaatatcaacaatttgat 821

                                                                        
Query: 822  caaaaacaagagattcaatcacaattgacccaattgattagcgatggtgaggaactcgag 881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  caaaaacaagagattcaatcacaattgacccaattgattagcgatggtgaggaactcgag 881

                                                                        
Query: 882  agtaaaggcgaggatatcagttccaacgcaaaggatataaataatattagaacaaagatc 941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  agtaaaggcgaggatatcagttccaacgcaaaggatataaataatattagaacaaagatc 941

                                                                        
Query: 942  attatcgtcggtttagtattttgcatggtagtggcaggcctcattggtgtatcagcacta 1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  attatcgtcggtttagtattttgcatggtagtggcaggcctcattggtgtatcagcacta 1001

                                                                        
Query: 1002 attggtctaccaagaatttcacgtgcagcctctatcgctttggtaattttaattccattc 1061
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 attggtctaccaagaatttcacgtgcagcctctatcgctttggtaattttaattccattc 1061

                                                                        
Query: 1062 atgtggatcgttttctctgttcattatccaatcaatagtgtcgttgctgatatttgtata 1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 atgtggatcgttttctctgttcattatccaatcaatagtgtcgttgctgatatttgtata 1121

                                                                        
Query: 1122 agttatgatacaactggtgtacaacaattatcaaattttacaaatccaattatcgaacag 1181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 agttatgatacaactggtgtacaacaattatcaaattttacaaatccaattatcgaacag 1181

                                                                        
Query: 1182 gtctttgaaggctgtcaaaatgacaataataccatctctgttttcgaggatttacaatca 1241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 gtctttgaaggctgtcaaaatgacaataataccatctctgttttcgaggatttacaatca 1241

                                                                        
Query: 1242 ttggttaataatctactccagaatgcaaccgatacaagttgtgataaaatcaatgacgct 1301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 ttggttaataatctactccagaatgcaaccgatacaagttgtgataaaatcaatgacgct 1301

                                                                        
Query: 1302 tgccaattggctttcccacgttatcctaatgataacccattatcagtaccatatcaacaa 1361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 tgccaattggctttcccacgttatcctaatgataacccattatcagtaccatatcaacaa 1361

                                                                        
Query: 1362 aatgttttagattgtccaccaactctaacttgtagcaatacaacattaagtatttattta 1421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 aatgttttagattgtccaccaactctaacttgtagcaatacaacattaagtatttattta 1421

                                                                        
Query: 1422 ttcaatactactgtccatgactttaatgttaaatgtaagaatgcaccaacttgtggtgat 1481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 ttcaatactactgtccatgactttaatgttaaatgtaagaatgcaccaacttgtggtgat 1481

                                                                        
Query: 1482 ttatcaacttgtgatccatccattcttaccgaagttatgtcttgtgattgggtagatgtt 1541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 ttatcaacttgtgatccatccattcttaccgaagttatgtcttgtgattgggtagatgtt 1541

                                                                        
Query: 1542 agttctgttaattcttgctctcaaggtggttgccaatacaaccaacaagttgtaaatact 1601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 agttctgttaattcttgctctcaaggtggttgccaatacaaccaacaagttgtaaatact 1601

                                                                        
Query: 1602 acaaaacaaattatgcaactttatgatatcttaacttcactcactactctttggactgat 1661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 acaaaacaaattatgcaactttatgatatcttaacttcactcactactctttggactgat 1661

                                                                        
Query: 1662 aaagttgtaccattaattaaatgttcatatcttatgccattcatagatgaagttcaaaat 1721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1662 aaagttgtaccattaattaaatgttcatatcttatgccattcatagatgaagttcaaaat 1721

                                                                        
Query: 1722 attgtttgcgttgatgaagttaattctttagatctcttaatagctccaactgcagtgttt 1781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 attgtttgcgttgatgaagttaattctttagatctcttaatagctccaactgcagtgttt 1781

                                                                        
Query: 1782 gccattttattaactggacttggtattactggtatcttaggaagtaagagatttaattcc 1841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1782 gccattttattaactggacttggtattactggtatcttaggaagtaagagatttaattcc 1841

                                                                   
Query: 1842 aaataccgtgtaaagggaagtagatcagcttaattccttgattatcaagttttta 1896
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842 aaataccgtgtaaagggaagtagatcagcttaattccttgattatcaagttttta 1896


 Score =  117 bits (59), Expect = 7e-26
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1916 caaaatcgactgttaaatatttgaataacttaaataaagtttatttattttctaaaatt 1974
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1916 caaaatcgactgttaaatatttgaataacttaaataaagtttatttattttctaaaatt 1974


>Contig-U13462-1 (Contig-U13462-1Q) /CSM_Contig/Contig-U13462-1Q.Seq.d
          Length = 603

 Score =  180 bits (91), Expect = 5e-45
 Identities = 325/403 (80%)
 Strand = Plus / Plus

                                                                       
Query: 417 gattgtaaatgggatgaatatattgaagcagtaatattattatcaggaattacctttata 476
           ||||||||||||||||||||||||||||||||| | ||||||||||| ||| | ||  ||
Sbjct: 34  gattgtaaatgggatgaatatattgaagcagtagttttattatcaggtattgcattggta 93

                                                                       
Query: 477 attgcagcaattacattaatttttggtataatattttggatttttagatgtctttgtttt 536
           |||| |   || |||||| | |||||||||||||||||||| || |||||| ||||||||
Sbjct: 94  attggacttataacattagtatttggtataatattttggatattcagatgtatttgtttt 153

                                                                       
Query: 537 ggtggttgtaaaccaacacatggtattctttgtccaggtccaaaatatgacccagatatt 596
           || ||||||||  | || |||||| |  ||||||||    ||| |||||| |||||||||
Sbjct: 154 ggaggttgtaatgctacccatggtttcttttgtccaaaaacaagatatgatccagatatt 213

                                                                       
Query: 597 ggtgaaggttactcaaagggtagagtttttatattaaaattggttacattaattatggtt 656
           ||||||||||||  ||  ||||| ||||| || || ||| | || |||||  ||||||| 
Sbjct: 214 ggtgaaggttacaaaagtggtagtgttttcattttgaaaatagtgacattggttatggta 273

                                                                       
Query: 657 gcaggttgtgttgcagttttcattacaagtttaaagggtaattcctctgtgacctctggt 716
           ||||| |||||||||||||||||||||  | | || ||||| || ||    || ||||||
Sbjct: 274 gcaggctgtgttgcagttttcattacagctcttaaaggtaactcatcaaccacatctggt 333

                                                                       
Query: 717 attaacaatttgagtgacactgttttcaataaaacctcatacactttagaacaattgatt 776
           ||||| ||| | ||||| ||  |||||||||| ||||| ||||  |||||  ||||| ||
Sbjct: 334 attaataatcttagtgatacaattttcaataagacctcttacatattagatgaattggtt 393

                                                      
Query: 777 gagattagtaatcaattaaatgagactaaatatcaacaatttg 819
           |  ||||||| | |||||||| | ||||||||| |||||||||
Sbjct: 394 ggaattagtattgaattaaatcaaactaaatatgaacaatttg 436


>Contig-U16457-1 (Contig-U16457-1Q) /CSM_Contig/Contig-U16457-1Q.Seq.d
          Length = 1065

 Score =  103 bits (52), Expect = 1e-21
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                        
Query: 1050 ttaattccattcatgtggatcgttttctctgttcattatccaatcaatagtgtcgttgct 1109
            ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| 
Sbjct: 70   ttaattccatttatgtggattgttttctctgttcattatccaatcaatagtgtagttgcc 129

                    
Query: 1110 gatatttg 1117
            ||||||||
Sbjct: 130  gatatttg 137


 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 93/108 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1707 gatgaagttcaaaatattgtttgcgttgatgaagttaattctttagatctcttaatagct 1766
            ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |  | |||
Sbjct: 745  gatgatgttcaaaatattgtttgtgttgatgaagtaaatgctttagatcttatcgttgct 804

                                                            
Query: 1767 ccaactgcagtgtttgccattttattaactggacttggtattactggt 1814
            ||||| || || ||||| |||||||||||||||||||| || ||||||
Sbjct: 805  ccaacagctgtatttgctattttattaactggacttggaataactggt 852


 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 85/103 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1281 tgtgataaaatcaatgacgcttgccaattggctttcccacgttatcctaatgataaccca 1340
            ||||||||||| ||||||||||| ||| |  | |||||||||||||| || ||| | |||
Sbjct: 313  tgtgataaaattaatgacgcttgtcaagtaacattcccacgttatccaaacgatgatcca 372

                                                       
Query: 1341 ttatcagtaccatatcaacaaaatgttttagattgtccaccaa 1383
                || | |||||| | |||||||||||||||||||||||||
Sbjct: 373  gctgcaattccatataatcaaaatgttttagattgtccaccaa 415


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,951
Number of Sequences: 8402
Number of extensions: 36951
Number of successful extensions: 3219
Number of sequences better than 10.0: 117
length of query: 1982
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1965
effective length of database: 7,932,708
effective search space: 15587771220
effective search space used: 15587771220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2. 3
Homology vs DNA 
Query= Contig-U15621-1 (Contig-U15621-1Q) /CSM_Contig/Contig-U15621-1Q.Seq.d
         (1982 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ357378) Dictyostelium discoideum cDNA clone:dda63j10, 3' ...  1304   0.0    3
(BJ338887) Dictyostelium discoideum cDNA clone:dda63j10, 5' ...  1195   0.0    1
(AU061452) Dictyostelium discoideum slug cDNA, clone SLE313.     1193   0.0    1
(AU034771) Dictyostelium discoideum slug cDNA, clone SLE313.     1146   0.0    2
(C83895) Dictyostelium discoideum slug cDNA, clone SSA537.        882   0.0    2
(BJ344243) Dictyostelium discoideum cDNA clone:dda18j22, 3' ...   638   e-178  1
(AU072689) Dictyostelium discoideum slug cDNA, clone SSA537.      476   e-129  1
(AU072828) Dictyostelium discoideum slug cDNA, clone SSF190.      458   e-124  1
(AU075007) Dictyostelium discoideum slug cDNA, clone SSM708.      133   9e-45  3
(AU271684) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   192   3e-44  1
(BJ414618) Dictyostelium discoideum cDNA clone:ddv19i19, 5' ...    70   2e-38  4
(BJ432799) Dictyostelium discoideum cDNA clone:ddv19i19, 3' ...    68   2e-33  6
(AU272304) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   103   5e-32  3
(AU272303) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   103   5e-32  3
(BJ339794) Dictyostelium discoideum cDNA clone:dda10l12, 3' ...    68   2e-26  5
(BJ377082) Dictyostelium discoideum cDNA clone:ddc22e14, 3' ...    68   2e-19  5
(C93368) Dictyostelium discoideum slug cDNA, clone SSM708.         68   2e-17  4
(AU039000) Dictyostelium discoideum slug cDNA, clone SSM258.       68   5e-17  2
(CP000983) Borrelia duttonii Ly plasmid pl27, complete seque...    36   0.40   4
(AY675189) Pentatoma metallifera isolate F3-S cytochrome oxi...    48   1.3    1
(CU694464) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.3    1
(CT670778) Danio rerio EST, clone ZF_mu_169m19 5'.                 48   1.3    1
(EJ230224) 1092402581901 Global-Ocean-Sampling_GS-27-01-01-1...    38   1.3    2
(BQ091109) ku13a07.y1 Strongyloides ratti L2 pAMP1 v1 Chiape...    42   1.4    2
(AC179759) Strongylocentrotus purpuratus clone R3-1016O12, W...    38   1.5    7
(BQ091112) ku13a10.y1 Strongyloides ratti L2 pAMP1 v1 Chiape...    42   1.5    2
(AM434210) Vitis vinifera contig VV78X084038.8, whole genome...    38   1.6    4
(AM426262) Vitis vinifera contig VV78X023113.11, whole genom...    36   1.8    3
(FC817780) Sr_pAMT7_09o08_T7 S. ratti mixed stage pAMP Stron...    42   1.9    2
(ED761174) GM_WBb0131P05.f GM_WBb Glycine max genomic clone ...    42   2.0    2
(FC817812) Sr_pAMT7_09p19_T7 S. ratti mixed stage pAMP Stron...    42   2.0    2
(ER420479) 1092963701360 Global-Ocean-Sampling_GS-35-01-01-1...    38   2.8    3
(CR392032) Zebrafish DNA sequence from clone DKEYP-64A3 in l...    44   3.3    10
(FD346492) CBPN26062.b1 CBPN: Subtracted channel catfish cDN...    36   3.4    2
(AM459595) Vitis vinifera contig VV78X179488.2, whole genome...    38   4.1    2
(CU861884) Zebrafish DNA sequence from clone CH1073-108O16 i...    46   5.1    1
(AC087772) Genomic Sequence for Mus musculus, clone RP23-326...    46   5.1    1
(AC020968) Mus musculus chromosome 18 clone RP23-193O23, com...    46   5.1    1
(AM482931) Vitis vinifera contig VV78X127807.5, whole genome...    46   5.1    1
(AM464236) Vitis vinifera, whole genome shotgun sequence, co...    46   5.1    1
(AL353757) Human DNA sequence from clone RP11-439I8 on chrom...    46   5.1    1
(AL132639) Human chromosome 14 DNA sequence BAC R-407N17 of ...    46   5.1    1
(AC109803) Homo sapiens chromosome 3 clone RP11-37F14, WORKI...    46   5.1    1
(AC109554) Rattus norvegicus clone CH230-331D3, *** SEQUENCI...    46   5.1    1
(AC107510) Rattus norvegicus clone CH230-138J6, *** SEQUENCI...    46   5.1    1
(AC221091) Bos taurus clone CH240-392N5, WORKING DRAFT SEQUE...    46   5.1    1
(AC179122) Strongylocentrotus purpuratus clone R3-4011J11, W...    46   5.1    1
(AC023197) Mus musculus clone RP22-239F2, LOW-PASS SEQUENCE ...    46   5.1    1
(AC022783) Mus musculus clone RP22-277L19, LOW-PASS SEQUENCE...    46   5.1    1
(AC016150) Homo sapiens chromosome X clone RP11-503D9, WORKI...    46   5.1    1
(AC011987) Homo sapiens clone RP11-19B13, WORKING DRAFT SEQU...    46   5.1    1
(AZ896070) RPCI-24-172K16.TJ RPCI-24 Mus musculus genomic cl...    46   5.1    1
(AZ893401) RPCI-24-172E16.TJ RPCI-24 Mus musculus genomic cl...    46   5.1    1
(EG930289) EST_ssal_evf_32417 ssalevf mixed_tissue Salmo sal...    46   5.1    1
(EG840652) EST_ssal_eve_9607 ssaleve thyroid Salmo salar cDN...    46   5.1    1
(EG795455) EST_ssal_evd_54026 ssalevd thymus Salmo salar cDN...    46   5.1    1
(EG768838) EST_ssal_evd_44738 ssalevd thymus Salmo salar cDN...    46   5.1    1
(EG768837) EST_ssal_evd_44737 ssalevd thymus Salmo salar cDN...    46   5.1    1
(DY701271) EST_ssal_rgb2_57010 ssalrgb2 mixed_tissue Salmo s...    46   5.1    1
(DW567235) EST_ssal_rgb2_31654 rgb2 Salmo salar cDNA clone s...    46   5.1    1
(DW560072) EST_ssal_rgb2_24491 rgb2 Salmo salar cDNA clone s...    46   5.1    1
(DW532942) EST_ssal_plnb_1578 plnb Salmo salar cDNA clone ss...    46   5.1    1
(DW532941) EST_ssal_plnb_1577 plnb Salmo salar cDNA clone ss...    46   5.1    1
(AM738664) Cucumis melo subsp. melo EST, clone 15d_01-E02-M13R.    46   5.1    1
(CX723838) 1331327 NCCCWA 09RT Oncorhynchus mykiss cDNA clon...    46   5.1    1
(CX352640) otshchmh031079_0 Oncorhynchus tshawytscha mixed_t...    46   5.1    1
(CU068498) AGENAE Rainbow trout multi-tissues library (tcce)...    46   5.1    1
(CU064051) AGENAE Rainbow trout normalized testis library (t...    46   5.1    1
(CB515635) ssalrgb553278 mixed_tissue Salmo salar cDNA, mRNA...    46   5.1    1
(CB506492) ssalcna009049 muscle_skin Salmo salar cDNA, mRNA ...    46   5.1    1
(BX910021) AGENAE Rainbow trout multi-tissues-normalized + 2...    46   5.1    1
(BX873130) AGENAE Rainbow trout multi-tissues-normalized + 2...    46   5.1    1
(BM064293) KS01065D06 KS01 Capsicum annuum cDNA, mRNA sequence.    46   5.1    1
(CP000117) Anabaena variabilis ATCC 29413, complete genome.        46   5.1    1
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen...    46   5.1    1
(EG237542) MSAM152212_2475_0968 LCM-dissected maize inbred l...    38   5.2    2
(EG106201) MSAM180067_1296_2807 LCM-dissected maize inbred l...    38   5.2    2
(EJ983288) 1093022169440 Global-Ocean-Sampling_GS-30-02-01-1...    36   6.3    2
(DB830606) Nilaparvata lugens mRNA, EST clone:NLNB8422, 5' e...    38   8.0    2
(ER557059) 1093015698980 Global-Ocean-Sampling_GS-36-01-01-2...    36   8.5    2
(AM481392) Vitis vinifera contig VV78X145211.7, whole genome...    36   9.3    2
(BX950871) Zebrafish DNA sequence from clone CH211-105C13 in...    38   9.5    10
(EJ799866) 1093017420288 Global-Ocean-Sampling_GS-30-02-01-1...    36   9.7    2

>(BJ357378) Dictyostelium discoideum cDNA clone:dda63j10, 3' end,
            single read.
          Length = 735

 Score = 1304 bits (658), Expect(3) = 0.0
 Identities = 660/661 (99%)
 Strand = Plus / Minus


Query: 1236 caatcattggttaataatctactccagaatgcaaccgatacaagttgtgataaaatcaat 1295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  caatcattggttaataatctactccagaatgcaaccgatacaagttgtgataaaatcaat 676


Query: 1296 gacgcttgccaattggctttcccacgttatcctaatgataacccattatcagtaccatat 1355
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 675  gacgcttgccaattggctttcccacgttatcntaatgataacccattatcagtaccatat 616


Query: 1356 caacaaaatgttttagattgtccaccaactctaacttgtagcaatacaacattaagtatt 1415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  caacaaaatgttttagattgtccaccaactctaacttgtagcaatacaacattaagtatt 556


Query: 1416 tatttattcaatactactgtccatgactttaatgttaaatgtaagaatgcaccaacttgt 1475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  tatttattcaatactactgtccatgactttaatgttaaatgtaagaatgcaccaacttgt 496


Query: 1476 ggtgatttatcaacttgtgatccatccattcttaccgaagttatgtcttgtgattgggta 1535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495  ggtgatttatcaacttgtgatccatccattcttaccgaagttatgtcttgtgattgggta 436


Query: 1536 gatgttagttctgttaattcttgctctcaaggtggttgccaatacaaccaacaagttgta 1595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435  gatgttagttctgttaattcttgctctcaaggtggttgccaatacaaccaacaagttgta 376


Query: 1596 aatactacaaaacaaattatgcaactttatgatatcttaacttcactcactactctttgg 1655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375  aatactacaaaacaaattatgcaactttatgatatcttaacttcactcactactctttgg 316


Query: 1656 actgataaagttgtaccattaattaaatgttcatatcttatgccattcatagatgaagtt 1715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315  actgataaagttgtaccattaattaaatgttcatatcttatgccattcatagatgaagtt 256


Query: 1716 caaaatattgtttgcgttgatgaagttaattctttagatctcttaatagctccaactgca 1775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255  caaaatattgtttgcgttgatgaagttaattctttagatctcttaatagctccaactgca 196


Query: 1776 gtgtttgccattttattaactggacttggtattactggtatcttaggaagtaagagattt 1835
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195  gtgtttgccattttattaactggacttggtattactggtatcttaggaagtaagagattt 136


Query: 1836 aattccaaataccgtgtaaagggaagtagatcagcttaattccttgattatcaagttttt 1895
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135  aattccaaataccgtgtaaagggaagtagatcagcttaattccttgattatcaagttttt 76


Query: 1896 a 1896
            |
Sbjct: 75   a 75

 Score = 42.1 bits (21), Expect(3) = 0.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus


Query: 1916 caaaatcgactgttaaatatt 1936
            |||||||||||||||||||||
Sbjct: 55   caaaatcgactgttaaatatt 35

 Score = 38.2 bits (19), Expect(3) = 0.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus


Query: 1942 aacttaaataaagtttatt 1960
            |||||||||||||||||||
Sbjct: 30   aacttaaataaagtttatt 12

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,035,092,082
Number of extensions: 128539260
Number of successful extensions: 10149291
Number of sequences better than 10.0: 84
Length of query: 1982
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1958
Effective length of database: 96,409,374,237
Effective search space: 188769554756046
Effective search space used: 188769554756046
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U15621-1 (Contig-U15621-1Q) /CSM_Contig/Contig-U15621-1Q.Seq.d
         (1982 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB861715_1(FB861715|pid:none) Sequence 80988 from Patent WO20080...    60   3e-07
FB861745_1(FB861745|pid:none) Sequence 81018 from Patent WO20080...    58   1e-06
AK064917_1(AK064917|pid:none) Oryza sativa Japonica Group cDNA c...    54   2e-05
EF085853_1(EF085853|pid:none) Picea sitchensis clone WS02812_M21...    54   3e-05
AC152347_9(AC152347|pid:none) Medicago truncatula clone mth2-28c...    43   0.037
AF062395_1(AF062395|pid:none) Borrelia turicatae 91E135 repeat m...    40   0.32
CP000685_241(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    40   0.41
CP001217_105(CP001217|pid:none) Helicobacter pylori P12, complet...    39   0.54
CP001173_88(CP001173|pid:none) Helicobacter pylori G27, complete...    39   0.54
AE000511_101(AE000511|pid:none) Helicobacter pylori 26695, compl...    39   0.70
AE017198_900(AE017198|pid:none) Lactobacillus johnsonii NCC 533,...    39   0.70
CP001072_96(CP001072|pid:none) Helicobacter pylori Shi470, compl...    39   0.70
CP000241_104(CP000241|pid:none) Helicobacter pylori HPAG1, compl...    39   0.92
AF143458_1(AF143458|pid:none) Borrelia hermsii strain HS1 BdrA2 ...    39   0.92
AF311901_8(AF311901|pid:none) Citrobacter rodentium strain DBS10...    38   1.2
AP011115_4739(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...    38   1.6
CP000575_992(CP000575|pid:none) Staphylothermus marinus F1, comp...    37   2.0
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 37   2.7
T16405(T16405)hypothetical protein F48E3.6 - Caenorhabditis eleg...    37   2.7
CP001110_1099(CP001110|pid:none) Pelodictyon phaeoclathratiforme...    37   2.7
AP006841_3070(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    37   2.7
U28735_7(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, c...    37   2.7
CP000879_833(CP000879|pid:none) Petrotoga mobilis SJ95, complete...    37   2.7
CR626927_2823(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...    37   2.7
CP001034_2413(CP001034|pid:none) Natranaerobius thermophilus JW/...    37   3.5
Z66562_4(Z66562|pid:none) Caenorhabditis elegans Cosmid F42E11, ...    37   3.5
(Q20332) RecName: Full=Protein tweety homolog;  &T22091(T22091) ...    37   3.5
(Q9Z2Y3) RecName: Full=Homer protein homolog 1; AltName: Full=VA...    36   4.6
AK076543_1(AK076543|pid:none) Mus musculus 0 day neonate head cD...    36   4.6
EF420156_54(EF420156|pid:none) Tanapox virus isolate TPV-Kenya, ...    36   4.6
AF022236_10(AF022236|pid:none) Escherichia coli strain E2348/69 ...    36   4.6
A86048(A86048) escT [imported] - Escherichia coli (strain O157:H...    36   4.6
(Q9DHR2) RecName: Full=Probable metalloendopeptidase G1-type;   ...    36   4.6
CP000267_2310(CP000267|pid:none) Rhodoferax ferrireducens T118, ...    36   4.6
AB019479_1(AB019479|pid:none) Mus musculus mRNA for Vesl-1L, com...    36   4.6
CP000680_3741(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    36   4.6
AE003852_1512(AE003852|pid:none) Vibrio cholerae O1 biovar eltor...    36   4.6
U57967_1(U57967|pid:none) Staphylothermus marinus surface layer ...    36   6.0
AF451864_1(AF451864|pid:none) Tetrahymena thermophila clone pMBR...    36   6.0
AF451863_3(AF451863|pid:none) Tetrahymena thermophila clone pMBR...    36   6.0
CR954203_132(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    36   6.0
(Q2KJ56) RecName: Full=Homer protein homolog 1;  &BC105509_1(BC1...    36   6.0
AF451862_4(AF451862|pid:none) Tetrahymena thermophila clone pMBR...    35   7.8
AY450534_1(AY450534|pid:none) Human rhinovirus 37 polyprotein mR...    35   7.8
AY386371_43(AY386371|pid:none) Yaba monkey tumor virus, complete...    35   7.8

>FB861715_1(FB861715|pid:none) Sequence 80988 from Patent
            WO2008034648.
          Length = 541

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 81/343 (23%), Positives = 141/343 (41%), Gaps = 15/343 (4%)
 Frame = +3

Query: 519  FRCLCFGGCKPTHGILCPGPKYDPDIGEGYSKGR----VFILKLVTLIMVAGCVAVFITS 686
            F CLC+          CP   Y      GYS+      +  L L TL  + GCV ++
Sbjct: 133  FICLCY--------CCCPREPY------GYSRLAYALSLIFLVLFTLAAIVGCVLLYTAQ 178

Query: 687  LKGNSSVTSGINNLSDTVFNKTSYTLEQLIEISNQLN-------ETKYQQFDQKQEIQSQ 845
             K + S T+ + +L     ++  +T E L  +S+ L+       E  +   D ++ I
Sbjct: 179  GKFHGSTTNTLKSL----VSQADFTAENLRNVSDYLDAAQKIGVEAVFLPADVQKNIDEV 234

Query: 846  LTQLISDGEELESKGEDISSNAKDINNIRTKIIIVGLVFCMVVAGLIGVSALIGLPRISR 1025
              ++ S   +L SK ++ S   KD+ +   + +++     + +A L  + ++ GL  +
Sbjct: 235  QMKINSSAADLSSKTKENSETIKDVIDAMRRDLVIVAAVMLFLAFLGFLFSIFGLQGLVY 294

Query: 1026 AASIALVILIPFMWIVFSVHYPINSVVADICISYDTTGVQQLSNFT--NPIIEQVFEGCQ 1199
               I   IL+   +I+  V   +++VVAD C++ D   VQ  +  T  + I+  V
Sbjct: 295  FLVIVGWILVAGTFILCGVFLFLHNVVADTCVAMD-GWVQNPTAHTALDEILPCVDNATA 353

Query: 1200 NDN--NTISVFEDLQSLVNNLLQNATDTSCDKINDACQLAFPRYPNDNPLSVPYQQNVLD 1373
            ++    T  V   L +LV+N++ N T+ +               P   PL   Y Q+
Sbjct: 354  HETLLRTRDVTHQLVNLVDNIVSNVTNRNLP-------------PAAGPLY--YNQSGPL 398

Query: 1374 CPPTLTCSNTTLSIYLFNTTVHDFNVKCKNAPTCGDLSTCDPS 1502
             PP     N+ L+    N +  D  V   NA       TC+ S
Sbjct: 399  MPPLCNPFNSDLT----NRSCADGEVSLDNAAEVWKNYTCEVS 437

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,645,002,139
Number of extensions: 51247329
Number of successful extensions: 140033
Number of sequences better than 10.0: 45
Number of HSP's gapped: 139833
Number of HSP's successfully gapped: 45
Length of query: 660
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 525
Effective length of database: 614,245,399
Effective search space: 322478834475
Effective search space used: 322478834475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.20  gvh: 0.55  alm: 0.29  top: 0.03  tms: 0.07  mit: 0.46  mip: 0.00
 nuc: 0.74  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.32  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: Golgi
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U15621-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 1
SL (DIR, L) 1
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1